ID ACNB_HELPY Reviewed; 852 AA. AC P56418; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-NOV-2015, entry version 106. DE RecName: Full=Aconitate hydratase B {ECO:0000250|UniProtKB:P36683}; DE Short=ACN {ECO:0000250|UniProtKB:P36683}; DE Short=Aconitase {ECO:0000250|UniProtKB:P36683}; DE EC=4.2.1.3 {ECO:0000250|UniProtKB:P36683}; DE AltName: Full=(2R,3S)-2-methylisocitrate dehydratase {ECO:0000250|UniProtKB:P36683}; DE AltName: Full=(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase {ECO:0000250|UniProtKB:P36683}; DE AltName: Full=2-methyl-cis-aconitate hydratase {ECO:0000250|UniProtKB:P36683}; DE EC=4.2.1.99 {ECO:0000250|UniProtKB:P36683}; DE AltName: Full=Iron-responsive protein-like {ECO:0000250|UniProtKB:P36683}; DE Short=IRP-like {ECO:0000250|UniProtKB:P36683}; DE AltName: Full=RNA-binding protein {ECO:0000250|UniProtKB:P36683}; GN Name=acnB; OrderedLocusNames=HP_0779; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the catabolism of short chain fatty acids CC (SCFA) via the tricarboxylic acid (TCA)(acetyl degradation route) CC and probably via the 2-methylcitrate cycle I (propionate CC degradation route). Catalyzes the reversible isomerization of CC citrate to isocitrate via cis-aconitate. Catalyzes the hydration CC of 2-methyl-cis-aconitate to yield (2R,3S)-2-methylisocitrate. The CC apo form of AcnB functions as a RNA-binding regulatory protein. CC {ECO:0000250|UniProtKB:P36683}. CC -!- CATALYTIC ACTIVITY: Citrate = isocitrate. CC {ECO:0000250|UniProtKB:P36683}. CC -!- CATALYTIC ACTIVITY: (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = CC (Z)-but-2-ene-1,2,3-tricarboxylate + H(2)O. CC {ECO:0000250|UniProtKB:P36683}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000250|UniProtKB:P36683}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. CC {ECO:0000250|UniProtKB:P36683}; CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; CC isocitrate from oxaloacetate: step 2/2. CC {ECO:0000250|UniProtKB:P36683}. CC -!- PATHWAY: Organic acid metabolism; propanoate degradation. CC {ECO:0000250|UniProtKB:P36683}. CC -!- SUBUNIT: Monomer. {ECO:0000250|UniProtKB:P36683}. CC -!- SIMILARITY: Belongs to the aconitase/IPM isomerase family. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07828.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07828.1; ALT_INIT; Genomic_DNA. DR PIR; C64617; C64617. DR RefSeq; NP_207572.1; NC_000915.1. DR RefSeq; WP_000974032.1; NC_000915.1. DR RefSeq; WP_001863439.1; NC_018939.1. DR ProteinModelPortal; P56418; -. DR SMR; P56418; 5-850. DR DIP; DIP-3210N; -. DR IntAct; P56418; 5. DR MINT; MINT-175591; -. DR STRING; 85962.HP0779; -. DR PaxDb; P56418; -. DR PRIDE; P56418; -. DR EnsemblBacteria; AAD07828; AAD07828; HP_0779. DR GeneID; 900338; -. DR KEGG; heo:C694_04000; -. DR KEGG; hpy:HP0779; -. DR PATRIC; 20592847; VBIHelPyl33062_0812. DR eggNOG; ENOG4107QIJ; Bacteria. DR eggNOG; COG1049; LUCA. DR KO; K01682; -. DR OMA; HATTRPD; -. DR OrthoDB; EOG6N944W; -. DR UniPathway; UPA00223; UER00718. DR UniPathway; UPA00946; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005829; C:cytosol; IEA:InterPro. DR GO; GO:0047456; F:2-methylisocitrate dehydratase activity; ISS:UniProtKB. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; ISS:UniProtKB. DR GO; GO:0003994; F:aconitate hydratase activity; ISS:UniProtKB. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB. DR GO; GO:0003729; F:mRNA binding; ISS:UniProtKB. DR GO; GO:0019629; P:propionate catabolic process, 2-methylcitrate cycle; ISS:UniProtKB. DR GO; GO:0006099; P:tricarboxylic acid cycle; ISS:UniProtKB. DR Gene3D; 3.20.19.10; -; 1. DR Gene3D; 3.30.499.10; -; 2. DR Gene3D; 3.40.1060.10; -; 1. DR InterPro; IPR015931; Acnase/IPM_dHydase_lsu_aba_1/3. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR001030; Acoase/IPM_deHydtase_lsu_aba. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR015932; Aconitase/IPMdHydase_lsu_aba_2. DR InterPro; IPR018136; Aconitase_4Fe-4S_BS. DR InterPro; IPR004406; Aconitase_B. DR InterPro; IPR015933; Aconitase_B_HEAT-like_dom. DR InterPro; IPR015929; Aconitase_B_N. DR PANTHER; PTHR11670; PTHR11670; 1. DR Pfam; PF00330; Aconitase; 1. DR Pfam; PF06434; Aconitase_2_N; 1. DR Pfam; PF11791; Aconitase_B_N; 1. DR PIRSF; PIRSF036687; AcnB; 1. DR SUPFAM; SSF52016; SSF52016; 1. DR SUPFAM; SSF53732; SSF53732; 1. DR SUPFAM; SSF74778; SSF74778; 1. DR TIGRFAMs; TIGR00117; acnB; 1. DR PROSITE; PS00450; ACONITASE_1; 1. DR PROSITE; PS01244; ACONITASE_2; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Lyase; Metal-binding; KW Reference proteome; RNA-binding; Tricarboxylic acid cycle. FT CHAIN 1 852 Aconitate hydratase B. FT /FTId=PRO_0000076676. FT REGION 237 239 Substrate binding. FT {ECO:0000250|UniProtKB:P36683}. FT REGION 405 407 Substrate binding. FT {ECO:0000250|UniProtKB:P36683}. FT METAL 708 708 Iron-sulfur (4Fe-4S). FT {ECO:0000250|UniProtKB:P36683}. FT METAL 766 766 Iron-sulfur (4Fe-4S). FT {ECO:0000250|UniProtKB:P36683}. FT METAL 769 769 Iron-sulfur (4Fe-4S). FT {ECO:0000250|UniProtKB:P36683}. FT BINDING 194 194 Substrate. FT {ECO:0000250|UniProtKB:P36683}. FT BINDING 489 489 Substrate. FT {ECO:0000250|UniProtKB:P36683}. FT BINDING 788 788 Substrate. FT {ECO:0000250|UniProtKB:P36683}. FT BINDING 793 793 Substrate. FT {ECO:0000250|UniProtKB:P36683}. SQ SEQUENCE 852 AA; 92663 MW; 7051382D8A0D0AB3 CRC64; MKDFLEDYKK SVSERGSEGI PPLPLNAKQV QAVVEILTKD PTNAAFAKEL LIHRVSPGVD EGAKVKAEFL AKLSQKKLEC VHISALEATT LLGTMLGGYN VEPLIMGLES QDKNIAKESA KALKTTLLVY GSFDKIAAMS KTNALAKEVL ESWANAEWFL NKEPLNECIE ACVFKIDGET NTDDLSPASD AFTRSDIPLH AKAMLKNRIE NYEQRIKAIK TKGVPVAYVG DVVGTGSSRK SATNSIMWHF GKDIPFVPNK RSGGIVIGGV IAPIFFATCE DSGALPIVAD VKDLKEGDLI KIYPYKGEIT LNDKVVSTFK LEPETLLDEV RASGRIPLII GRGLTNKARK FLGLGESEAF KKPSAPKSDA KGYTLAQKIV GHACGVKGIL PGTYCEPKVT TVGSQDTTGA MTRDEVKELA SLKFDAPFVL QSFCHTAAYP KPSDVSLHAT LPGFITQRGG VALHPGDGVI HTWLNRMGLP DTLGTGGDSH TRFPLGISFP AGSGLVAFAA VTGTMPLNMP ESVLVRFKGE MNPGITLRDL VNAIPYYAIK KGLLTVEKKG KINVFNGRIL EIEGLPDIKM EQAFELSDAS AERSAAACVV RLNKEPMIEY LKSNIKLIDE MIASGYEDKE TLKKRRDAMQ AWVDNPVLLE PDSNAQYAAV IEIDVAEITE PILACPNDPD DVATLSEVLA DTTGKRPHAI DEVFIGSCMT NIGHFRAFGE IVKNAPPSQA RLWVVPPSKM DEQELINEGY YAIFGAAGAR TEVPGCSLCM GNQARVRDNA VVFSTSTRNF DNRMGRGAKV YLGSAELGAA CALLGRIPTK EEYMNLVSEK LESQKDKIYR YMNFNLMENF RL // ID 6PGL_HELPY Reviewed; 227 AA. AC O25730; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=6-phosphogluconolactonase; DE Short=6PGL; DE EC=3.1.1.31; GN Name=pgl; Synonyms=devB; OrderedLocusNames=HP_1102; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Hydrolysis of 6-phosphogluconolactone to 6- CC phosphogluconate. CC -!- CATALYTIC ACTIVITY: 6-phospho-D-glucono-1,5-lactone + H(2)O = 6- CC phospho-D-gluconate. CC -!- PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D- CC ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): CC step 2/3. CC -!- SIMILARITY: Belongs to the glucosamine/galactosamine-6-phosphate CC isomerase family. 6-phosphogluconolactonase subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08145.1; -; Genomic_DNA. DR PIR; F64657; F64657. DR RefSeq; NP_207893.1; NC_000915.1. DR RefSeq; WP_000542222.1; NC_018939.1. DR ProteinModelPortal; O25730; -. DR DIP; DIP-3651N; -. DR IntAct; O25730; 3. DR MINT; MINT-159493; -. DR STRING; 85962.HP1102; -. DR PaxDb; O25730; -. DR PRIDE; O25730; -. DR EnsemblBacteria; AAD08145; AAD08145; HP_1102. DR GeneID; 899638; -. DR KEGG; heo:C694_05685; -. DR KEGG; hpy:HP1102; -. DR PATRIC; 20593543; VBIHelPyl33062_1151. DR eggNOG; ENOG4108Q79; Bacteria. DR eggNOG; COG0363; LUCA. DR KO; K01057; -. DR OMA; PESHADS; -. DR OrthoDB; EOG63FW46; -. DR BioCyc; HPY:HP1102-MONOMER; -. DR UniPathway; UPA00115; UER00409. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0017057; F:6-phosphogluconolactonase activity; IEA:UniProtKB-EC. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-UniPathway. DR InterPro; IPR005900; 6-phosphogluconolactonase_DevB. DR InterPro; IPR006148; Glc/Gal-6P_isomerase. DR Pfam; PF01182; Glucosamine_iso; 1. DR TIGRFAMs; TIGR01198; pgl; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Reference proteome. FT CHAIN 1 227 6-phosphogluconolactonase. FT /FTId=PRO_0000090095. SQ SEQUENCE 227 AA; 25728 MW; B2592B35B63971A6 CRC64; MGYQLFEFEN LKDCHKALTE RFKEFFNTAL KKHHQISIAF SGGRSPISLL QKLSVLNLKW HECLISLVDE RIIDTSHDDS NTKLLHDYLL QNNALKASFI PLLPEKISSD TNALFNFANQ HFKQPHLAIL GMGTDGHTAS LFPETSAFLN EEKENIVLTK PINAPYERLS MSVNALENCE KLFLSISGVE KRGVLEKALK ENAPYSLPIA RILHSQKVTT EVFYAKN // ID ACP_HELPY Reviewed; 78 AA. AC P56464; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE RecName: Full=Acyl carrier protein {ECO:0000255|HAMAP-Rule:MF_01217}; DE Short=ACP {ECO:0000255|HAMAP-Rule:MF_01217}; GN Name=acpP {ECO:0000255|HAMAP-Rule:MF_01217}; GN OrderedLocusNames=HP_0559; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Carrier of the growing fatty acid chain in fatty acid CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_01217}. CC -!- PATHWAY: Lipid metabolism; fatty acid biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_01217}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01217}. CC -!- PTM: 4'-phosphopantetheine is transferred from CoA to a specific CC serine of apo-ACP by AcpS. This modification is essential for CC activity because fatty acids are bound in thioester linkage to the CC sulfhydryl of the prosthetic group. {ECO:0000255|HAMAP- CC Rule:MF_01217}. CC -!- SIMILARITY: Contains 1 acyl carrier domain. {ECO:0000255|HAMAP- CC Rule:MF_01217}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07626.1; -; Genomic_DNA. DR PIR; G64589; G64589. DR RefSeq; NP_207354.1; NC_000915.1. DR RefSeq; WP_001163100.1; NC_018939.1. DR ProteinModelPortal; P56464; -. DR SMR; P56464; 2-74. DR IntAct; P56464; 4. DR STRING; 85962.HP0559; -. DR PaxDb; P56464; -. DR PRIDE; P56464; -. DR EnsemblBacteria; AAD07626; AAD07626; HP_0559. DR GeneID; 900011; -. DR KEGG; heo:C694_02890; -. DR KEGG; hpy:HP0559; -. DR PATRIC; 20592393; VBIHelPyl33062_0585. DR eggNOG; ENOG4105VNB; Bacteria. DR eggNOG; COG0236; LUCA. DR KO; K02078; -. DR OMA; CEIPDDQ; -. DR OrthoDB; EOG6MWNJM; -. DR UniPathway; UPA00094; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000036; F:ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1200.10; -; 1. DR HAMAP; MF_01217; Acyl_carrier; 1. DR InterPro; IPR003231; Acyl_carrier. DR InterPro; IPR020806; PKS_PP-bd. DR InterPro; IPR009081; PP-bd_ACP. DR InterPro; IPR006162; Ppantetheine_attach_site. DR Pfam; PF00550; PP-binding; 1. DR ProDom; PD000887; PD000887; 1. DR SMART; SM00823; PKS_PP; 1. DR SUPFAM; SSF47336; SSF47336; 1. DR TIGRFAMs; TIGR00517; acyl_carrier; 1. DR PROSITE; PS50075; ACP_DOMAIN; 1. DR PROSITE; PS00012; PHOSPHOPANTETHEINE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Fatty acid biosynthesis; KW Fatty acid metabolism; Lipid biosynthesis; Lipid metabolism; KW Phosphopantetheine; Phosphoprotein; Reference proteome. FT CHAIN 1 78 Acyl carrier protein. FT /FTId=PRO_0000180144. FT MOD_RES 36 36 O-(pantetheine 4'-phosphoryl)serine. FT {ECO:0000255|HAMAP-Rule:MF_01217}. SQ SEQUENCE 78 AA; 8590 MW; 5DA351914F6DCF09 CRC64; MALFEDIQAV IAEQLNVDAV QVTPEAEFVK DLGADSLDVV ELIMALEEKF GVEIPDEQAE KIINVGDVVK YIEDNKLA // ID ACSA_HELPY Reviewed; 662 AA. AC O25686; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Acetyl-coenzyme A synthetase {ECO:0000255|HAMAP-Rule:MF_01123}; DE Short=AcCoA synthetase {ECO:0000255|HAMAP-Rule:MF_01123}; DE Short=Acs {ECO:0000255|HAMAP-Rule:MF_01123}; DE EC=6.2.1.1 {ECO:0000255|HAMAP-Rule:MF_01123}; DE AltName: Full=Acetate--CoA ligase {ECO:0000255|HAMAP-Rule:MF_01123}; DE AltName: Full=Acyl-activating enzyme {ECO:0000255|HAMAP-Rule:MF_01123}; GN Name=acsA {ECO:0000255|HAMAP-Rule:MF_01123}; Synonyms=acs; GN OrderedLocusNames=HP_1045; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of acetate into acetyl-CoA CC (AcCoA), an essential intermediate at the junction of anabolic and CC catabolic pathways. AcsA undergoes a two-step reaction. In the CC first half reaction, AcsA combines acetate with ATP to form CC acetyl-adenylate (AcAMP) intermediate. In the second half CC reaction, it can then transfer the acetyl group from AcAMP to the CC sulfhydryl group of CoA, forming the product AcCoA. CC {ECO:0000255|HAMAP-Rule:MF_01123}. CC -!- CATALYTIC ACTIVITY: ATP + acetate + CoA = AMP + diphosphate + CC acetyl-CoA. {ECO:0000255|HAMAP-Rule:MF_01123}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01123}; CC -!- PTM: Acetylated. Deacetylation by the SIR2-homolog deacetylase CC activates the enzyme. {ECO:0000255|HAMAP-Rule:MF_01123}. CC -!- MISCELLANEOUS: There is no ortholog for acsA in strain J99. CC -!- SIMILARITY: Belongs to the ATP-dependent AMP-binding enzyme CC family. {ECO:0000255|HAMAP-Rule:MF_01123}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08090.1; -; Genomic_DNA. DR PIR; E64650; E64650. DR RefSeq; NP_207835.1; NC_000915.1. DR RefSeq; WP_001175410.1; NC_018939.1. DR ProteinModelPortal; O25686; -. DR DIP; DIP-3168N; -. DR IntAct; O25686; 7. DR MINT; MINT-164557; -. DR STRING; 85962.HP1045; -. DR PaxDb; O25686; -. DR PRIDE; O25686; -. DR EnsemblBacteria; AAD08090; AAD08090; HP_1045. DR GeneID; 899580; -. DR KEGG; heo:C694_05405; -. DR KEGG; hpy:HP1045; -. DR PATRIC; 20593427; VBIHelPyl33062_1094. DR eggNOG; ENOG4108IQF; Bacteria. DR eggNOG; COG0365; LUCA. DR KO; K01895; -. DR OMA; AISKHEM; -. DR OrthoDB; EOG68WR2H; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003987; F:acetate-CoA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016208; F:AMP binding; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0019427; P:acetyl-CoA biosynthetic process from acetate; IEA:InterPro. DR HAMAP; MF_01123; Ac_CoA_synth; 1. DR InterPro; IPR011904; Ac_CoA_lig. DR InterPro; IPR032387; ACAS_N. DR InterPro; IPR025110; AMP-bd_C. DR InterPro; IPR020845; AMP-binding_CS. DR InterPro; IPR000873; AMP-dep_Synth/Lig. DR Pfam; PF16177; ACAS_N; 1. DR Pfam; PF00501; AMP-binding; 1. DR Pfam; PF13193; AMP-binding_C; 1. DR TIGRFAMs; TIGR02188; Ac_CoA_lig_AcsA; 1. DR PROSITE; PS00455; AMP_BINDING; 1. PE 3: Inferred from homology; KW Acetylation; ATP-binding; Complete proteome; Ligase; Magnesium; KW Metal-binding; Nucleotide-binding; Reference proteome. FT CHAIN 1 662 Acetyl-coenzyme A synthetase. FT /FTId=PRO_0000208365. FT NP_BIND 393 395 ATP. {ECO:0000255|HAMAP-Rule:MF_01123}. FT NP_BIND 417 422 ATP. {ECO:0000255|HAMAP-Rule:MF_01123}. FT REGION 197 200 Coenzyme A binding. {ECO:0000255|HAMAP- FT Rule:MF_01123}. FT METAL 549 549 Magnesium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01123}. FT METAL 552 552 Magnesium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01123}. FT BINDING 317 317 Coenzyme A. {ECO:0000255|HAMAP- FT Rule:MF_01123}. FT BINDING 510 510 ATP. {ECO:0000255|HAMAP-Rule:MF_01123}. FT BINDING 525 525 ATP. {ECO:0000255|HAMAP-Rule:MF_01123}. FT BINDING 533 533 Coenzyme A; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01123}. FT BINDING 536 536 ATP. {ECO:0000255|HAMAP-Rule:MF_01123}. FT MOD_RES 623 623 N6-acetyllysine. {ECO:0000255|HAMAP- FT Rule:MF_01123}. SQ SEQUENCE 662 AA; 74948 MW; A83E0F9A34F021F3 CRC64; MQLDEDLEFA KKIFNPNRAF AKQARIKNMC EYKDLVHEAN EDYEHFWGDL AKQKLTWFKP FDKVLNSDNA PFFKWFENGK INVSYNCIDR HLKDKKNKVA IIFEGEMGDY NVITYRKLHS EVNKTANLLK NEFNVKKGDR VIIYMPMIVE SVYMMLACTR IGAIHSIVFA GFSPEALRDR INDAQAKLVI TADGTFRKGK PYMLKPALDK ALENNACPSV EKALIVIRNA KEIDYVRGRD FVYNEMVNYQ SDKCEPEMMD SEDPLFLLYT SGSTGKPKGV QHSSAGYLLW AQMTMEWVFD IRDNDNFWCT ADIGWITGHT YVVYGPLACG ATTLILEGTM SYPDYGRWWR MIEEYRVDKF YTSPTAIRML HAKGENEPSK YNLESLKVLG TVGEPINPTA WKWFYEKIGN SKCSIVDTWW QTETGGHIIS PLPGATPIRA SCATLPLPGI HAEVLNEDGT KTKPGEQGFL CITKPWPSMI RNIWGDEKRY IDSYFSQIKL NGEYVYLSGD GAIVDENGYI TIIGRTDDIV NVSGHRIGTA EVESAISKHE MVAECAVVGI PDAIKGEGLF AFVVLCDGAK CNLGESLELL KEMNHILSIE IGKIAKLDNV MYVPGLPKTR SGKIMRRLLK SIAKKEPITQ DLSTLEDVNV VKEIMSIAQM EE // ID ACCA_HELPY Reviewed; 312 AA. AC O25283; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; DE Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; DE Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; DE EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823}; GN Name=accA {ECO:0000255|HAMAP-Rule:MF_00823}; GN OrderedLocusNames=HP_0557; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Component of the acetyl coenzyme A carboxylase (ACC) CC complex. First, biotin carboxylase catalyzes the carboxylation of CC biotin on its carrier protein (BCCP) and then the CO(2) group is CC transferred by the carboxyltransferase to acetyl-CoA to form CC malonyl-CoA. {ECO:0000255|HAMAP-Rule:MF_00823}. CC -!- CATALYTIC ACTIVITY: ATP + acetyl-CoA + HCO(3)(-) = ADP + phosphate CC + malonyl-CoA. {ECO:0000255|HAMAP-Rule:MF_00823}. CC -!- PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA CC from acetyl-CoA: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00823}. CC -!- SUBUNIT: Acetyl-CoA carboxylase is a heterohexamer composed of CC biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) CC and two subunits each of ACCase subunit alpha (AccA) and ACCase CC subunit beta (AccD). {ECO:0000255|HAMAP-Rule:MF_00823}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00823}. CC -!- SIMILARITY: Belongs to the AccA family. {ECO:0000255|HAMAP- CC Rule:MF_00823}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07624.1; -; Genomic_DNA. DR PIR; E64589; E64589. DR RefSeq; NP_207352.1; NC_000915.1. DR RefSeq; WP_000312027.1; NC_018939.1. DR ProteinModelPortal; O25283; -. DR IntAct; O25283; 2. DR STRING; 85962.HP0557; -. DR PaxDb; O25283; -. DR PRIDE; O25283; -. DR EnsemblBacteria; AAD07624; AAD07624; HP_0557. DR GeneID; 900037; -. DR KEGG; heo:C694_02875; -. DR KEGG; hpy:HP0557; -. DR PATRIC; 20592389; VBIHelPyl33062_0583. DR eggNOG; ENOG4107QM9; Bacteria. DR eggNOG; COG0825; LUCA. DR KO; K01962; -. DR OMA; HSVYTVA; -. DR OrthoDB; EOG6HQSSF; -. DR BioCyc; HPY:HP0557-MONOMER; -. DR UniPathway; UPA00655; UER00711. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009317; C:acetyl-CoA carboxylase complex; IEA:InterPro. DR GO; GO:0003989; F:acetyl-CoA carboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:2001295; P:malonyl-CoA biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.90.226.10; -; 1. DR HAMAP; MF_00823; AcetylCoA_CT_alpha; 1. DR InterPro; IPR001095; Acetyl_CoA_COase_a_su. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR011763; COA_CT_C. DR Pfam; PF03255; ACCA; 1. DR PRINTS; PR01069; ACCCTRFRASEA. DR SUPFAM; SSF52096; SSF52096; 1. DR TIGRFAMs; TIGR00513; accA; 1. DR PROSITE; PS50989; COA_CT_CTER; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Fatty acid biosynthesis; KW Fatty acid metabolism; Ligase; Lipid biosynthesis; Lipid metabolism; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 312 Acetyl-coenzyme A carboxylase carboxyl FT transferase subunit alpha. FT /FTId=PRO_0000146780. SQ SEQUENCE 312 AA; 34881 MW; 6089E65E4B7F88C9 CRC64; MAVYLDFENH IKEIQNEIEL ALIRGDEDAK EILEKRLDKE VKSIYSNLTD FQKLQLARHP DRPYAMDYID LILKDKYEVF GDRHYNDDKA IVCFVGKIDN VPVVVIGEEK GRGTKNKLLR NFGMPNPCGY RKALKMAKFA EKFNLPILML VDTAGAYPGI GAEERGQSEA IAKNLQEFAS LKVPTISVII GEGGSGGALA IAVADKLAMM EYSIFSVISP EGCAAILWDD PSKTEVAIKA MKITPRDLKE AGLIDDIILE PSKGAHRDKF SAANTIKEYF LDALRTIQQD PHFLDNRYQK LMSLGSFVES MN // ID ACPS_HELPY Reviewed; 119 AA. AC O25488; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=Holo-[acyl-carrier-protein] synthase {ECO:0000255|HAMAP-Rule:MF_00101}; DE Short=Holo-ACP synthase {ECO:0000255|HAMAP-Rule:MF_00101}; DE EC=2.7.8.7 {ECO:0000255|HAMAP-Rule:MF_00101}; DE AltName: Full=4'-phosphopantetheinyl transferase AcpS {ECO:0000255|HAMAP-Rule:MF_00101}; GN Name=acpS {ECO:0000255|HAMAP-Rule:MF_00101}; GN OrderedLocusNames=HP_0808; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transfers the 4'-phosphopantetheine moiety from coenzyme CC A to a Ser of acyl-carrier-protein. {ECO:0000255|HAMAP- CC Rule:MF_00101}. CC -!- CATALYTIC ACTIVITY: CoA-(4'-phosphopantetheine) + apo-[acyl- CC carrier-protein] = adenosine 3',5'-bisphosphate + holo-[acyl- CC carrier-protein]. {ECO:0000255|HAMAP-Rule:MF_00101}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00101}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00101}. CC -!- SIMILARITY: Belongs to the P-Pant transferase superfamily. AcpS CC family. {ECO:0000255|HAMAP-Rule:MF_00101}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07855.1; -; Genomic_DNA. DR PIR; H64620; H64620. DR RefSeq; NP_207601.1; NC_000915.1. DR RefSeq; WP_000579175.1; NC_018939.1. DR ProteinModelPortal; O25488; -. DR IntAct; O25488; 12. DR STRING; 85962.HP0808; -. DR PaxDb; O25488; -. DR PRIDE; O25488; -. DR EnsemblBacteria; AAD07855; AAD07855; HP_0808. DR GeneID; 899353; -. DR KEGG; heo:C694_04140; -. DR KEGG; hpy:HP0808; -. DR PATRIC; 20592903; VBIHelPyl33062_0840. DR eggNOG; ENOG410829W; Bacteria. DR eggNOG; COG0736; LUCA. DR KO; K00997; -. DR OMA; RFKMRFL; -. DR OrthoDB; EOG6384R9; -. DR BioCyc; HPY:HP0808-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008897; F:holo-[acyl-carrier-protein] synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.470.20; -; 1. DR HAMAP; MF_00101; AcpS; 1. DR InterPro; IPR008278; 4-PPantetheinyl_Trfase_SF. DR InterPro; IPR002582; ACPS. DR InterPro; IPR004568; Ppantetheine-prot_Trfase_dom. DR Pfam; PF01648; ACPS; 1. DR ProDom; PD004282; PPantethiene-prot_Trfase; 1. DR SUPFAM; SSF56214; SSF56214; 1. DR TIGRFAMs; TIGR00516; acpS; 1. DR TIGRFAMs; TIGR00556; pantethn_trn; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Fatty acid biosynthesis; KW Fatty acid metabolism; Lipid biosynthesis; Lipid metabolism; KW Magnesium; Metal-binding; Reference proteome; Transferase. FT CHAIN 1 119 Holo-[acyl-carrier-protein] synthase. FT /FTId=PRO_0000175653. FT METAL 5 5 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00101}. FT METAL 51 51 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00101}. SQ SEQUENCE 119 AA; 13004 MW; F6763F8C8554883C CRC64; MIGIDIVSIA RIEKCVKRFK MKFLERFLSP SEIVLCKDKS SSIAGFFALK EACSKALQVG IGKELSFLDI KISKSPKNAP LITLSKEKMD YFNIQSLSAS ISHDAGFAIA VVVVSSSNE // ID ADDE_HELPY Reviewed; 409 AA. AC O25046; DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 76. DE RecName: Full=Adenosine deaminase; DE EC=3.5.4.4; GN OrderedLocusNames=HP_0267, C694_01350; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, CATALYTIC ACTIVITY, RP SUBSTRATE SPECIFICITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Catalyzes the deamination of adenosine into inosine. Is CC also able to deaminate adenine, but with considerably less CC efficiency. Is not active toward 6-chloroadenine. CC {ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: Adenosine + H(2)O = inosine + NH(3). CC {ECO:0000269|PubMed:23825549}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.32 mM for adenosine {ECO:0000269|PubMed:23825549}; CC KM=2.04 mM for adenine {ECO:0000269|PubMed:23825549}; CC Note=kcat is 1101 min(-1) and 0.47 min(-1) with adenosine and CC adenine as substrate, respectively.; CC pH dependence: CC Optimum pH is about 7.5. Retains > 70% maximum activity at pH CC 9.0, but displays only 6% activity at pH 4.5. CC {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is about 45 degrees Celsius. CC {ECO:0000269|PubMed:23825549}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07333.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41491.1; -; Genomic_DNA. DR PIR; C64553; C64553. DR RefSeq; NP_207065.1; NC_000915.1. DR RefSeq; WP_001155847.1; NC_018939.1. DR ProteinModelPortal; O25046; -. DR DIP; DIP-3371N; -. DR IntAct; O25046; 1. DR MINT; MINT-174318; -. DR STRING; 85962.HP0267; -. DR PaxDb; O25046; -. DR PRIDE; O25046; -. DR EnsemblBacteria; AAD07333; AAD07333; HP_0267. DR EnsemblBacteria; AFV41491; AFV41491; C694_01350. DR GeneID; 900187; -. DR KEGG; heo:C694_01350; -. DR KEGG; hpy:HP0267; -. DR PATRIC; 20591761; VBIHelPyl33062_0278. DR eggNOG; ENOG4107SYB; Bacteria. DR eggNOG; COG0402; LUCA. DR OMA; LENCQGA; -. DR OrthoDB; EOG65QWFB; -. DR BioCyc; HPY:HP0267-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004000; F:adenosine deaminase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 2.30.40.10; -; 1. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR Pfam; PF01979; Amidohydro_1; 1. DR SUPFAM; SSF51338; SSF51338; 1. DR SUPFAM; SSF51556; SSF51556; 1. PE 1: Evidence at protein level; KW Complete proteome; Hydrolase; Metal-binding; Reference proteome; Zinc. FT CHAIN 1 409 Adenosine deaminase. FT /FTId=PRO_0000424561. FT METAL 65 65 Zinc; via tele nitrogen. {ECO:0000250}. FT METAL 67 67 Zinc; via tele nitrogen. {ECO:0000250}. FT METAL 207 207 Zinc; via tele nitrogen. {ECO:0000250}. FT METAL 314 314 Zinc. {ECO:0000250}. SQ SEQUENCE 409 AA; 45541 MW; 211A4736AAB1527F CRC64; MQEIIGASLV FLCNEKCEVL EDYGVVFDEK IVEIGDYQSL TLKYPHLKAQ FFENSVLLPA FINAHTHFEF SNNKASFDYG SFSGWLGSVL NNGGAILENC QGAIQNAIST QLKSGVGSVG AISNHLIEVN LLKESPLNAV VFLEFLGSSY SLEKLKAFEA KFKELKDLED KKLKAALAVH APYSVQKDMA LSVIQLAKDS QSLLSTHFLE SLEELEWVEN SKGWFENFYQ HFLKESHFKS LYKGANDYID MFKDTHTLFV HNQFASLEAL KRIKSQVKNA FLITCPFSNR LLSGQALDLE RTKEAGLSVS VATDGLSSNI SLSLLDELRA FLLTHNMPLL ELAKIALLGA TRHGAKALAL NNGEIEANKR ADLSVFGFNE KFTKEQAILQ FLLHAKEVEC LFLGGKRVI // ID ALF_HELPY Reviewed; 307 AA. AC P56109; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 99. DE RecName: Full=Fructose-bisphosphate aldolase; DE Short=FBP aldolase; DE Short=FBPA; DE EC=4.1.2.13; DE AltName: Full=Fructose-1,6-bisphosphate aldolase; GN Name=fba; OrderedLocusNames=HP_0176; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the aldol condensation of dihydroxyacetone CC phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3- CC phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in CC gluconeogenesis and the reverse reaction in glycolysis. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: D-fructose 1,6-bisphosphate = glycerone CC phosphate + D-glyceraldehyde 3-phosphate. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 2 Zn(2+) ions per subunit. One is catalytic and the CC other provides a structural contribution. {ECO:0000250}; CC -!- PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3- CC phosphate and glycerone phosphate from D-glucose: step 4/4. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class II fructose-bisphosphate aldolase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07246.1; -; Genomic_DNA. DR PIR; H64541; H64541. DR RefSeq; NP_206975.1; NC_000915.1. DR RefSeq; WP_000960471.1; NC_018939.1. DR PDB; 3C4U; X-ray; 1.83 A; A/B=1-307. DR PDB; 3C52; X-ray; 2.30 A; A/B=1-307. DR PDB; 3C56; X-ray; 2.30 A; A/B=1-307. DR PDBsum; 3C4U; -. DR PDBsum; 3C52; -. DR PDBsum; 3C56; -. DR ProteinModelPortal; P56109; -. DR STRING; 85962.HP0176; -. DR BindingDB; P56109; -. DR ChEMBL; CHEMBL1287618; -. DR PaxDb; P56109; -. DR PRIDE; P56109; -. DR EnsemblBacteria; AAD07246; AAD07246; HP_0176. DR GeneID; 900140; -. DR KEGG; heo:C694_00875; -. DR KEGG; hpy:HP0176; -. DR PATRIC; 20591573; VBIHelPyl33062_0186. DR eggNOG; ENOG4105D2N; Bacteria. DR eggNOG; COG0191; LUCA. DR KO; K01624; -. DR OMA; VNTREMF; -. DR OrthoDB; EOG6HXJ7B; -. DR BRENDA; 4.1.2.13; 2604. DR UniPathway; UPA00109; UER00183. DR EvolutionaryTrace; P56109; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004332; F:fructose-bisphosphate aldolase activity; IEA:UniProtKB-EC. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0030388; P:fructose 1,6-bisphosphate metabolic process; IEA:InterPro. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR011289; Fruc_bis_ald_class-2. DR InterPro; IPR000771; Ketose_bisP_aldolase_II. DR Pfam; PF01116; F_bP_aldolase; 1. DR PIRSF; PIRSF001359; F_bP_aldolase_II; 1. DR TIGRFAMs; TIGR00167; cbbA; 1. DR TIGRFAMs; TIGR01859; fruc_bis_ald_; 1. DR PROSITE; PS00602; ALDOLASE_CLASS_II_1; 1. DR PROSITE; PS00806; ALDOLASE_CLASS_II_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Glycolysis; Lyase; Metal-binding; KW Reference proteome; Zinc. FT CHAIN 1 307 Fructose-bisphosphate aldolase. FT /FTId=PRO_0000178717. FT REGION 211 213 Dihydroxyacetone phosphate binding. FT {ECO:0000250}. FT REGION 253 256 Dihydroxyacetone phosphate binding. FT {ECO:0000250}. FT ACT_SITE 82 82 Proton donor. {ECO:0000250}. FT METAL 83 83 Zinc 1; catalytic. {ECO:0000250}. FT METAL 104 104 Zinc 2. {ECO:0000250}. FT METAL 134 134 Zinc 2. {ECO:0000250}. FT METAL 180 180 Zinc 1; catalytic. {ECO:0000250}. FT METAL 210 210 Zinc 1; catalytic. {ECO:0000250}. FT BINDING 49 49 Glyceraldehyde 3-phosphate. FT {ECO:0000250}. FT BINDING 181 181 Dihydroxyacetone phosphate; via amide FT nitrogen. {ECO:0000250}. FT HELIX 5 15 {ECO:0000244|PDB:3C4U}. FT STRAND 19 23 {ECO:0000244|PDB:3C4U}. FT HELIX 27 40 {ECO:0000244|PDB:3C4U}. FT STRAND 44 49 {ECO:0000244|PDB:3C4U}. FT HELIX 50 56 {ECO:0000244|PDB:3C4U}. FT HELIX 58 71 {ECO:0000244|PDB:3C4U}. FT STRAND 77 84 {ECO:0000244|PDB:3C4U}. FT HELIX 87 96 {ECO:0000244|PDB:3C4U}. FT STRAND 99 103 {ECO:0000244|PDB:3C4U}. FT HELIX 110 126 {ECO:0000244|PDB:3C4U}. FT STRAND 130 135 {ECO:0000244|PDB:3C4U}. FT HELIX 157 167 {ECO:0000244|PDB:3C4U}. FT STRAND 170 174 {ECO:0000244|PDB:3C4U}. FT HELIX 181 183 {ECO:0000244|PDB:3C4U}. FT STRAND 186 188 {ECO:0000244|PDB:3C52}. FT HELIX 193 203 {ECO:0000244|PDB:3C4U}. FT STRAND 207 209 {ECO:0000244|PDB:3C4U}. FT HELIX 217 225 {ECO:0000244|PDB:3C4U}. FT HELIX 238 247 {ECO:0000244|PDB:3C4U}. FT STRAND 249 254 {ECO:0000244|PDB:3C4U}. FT HELIX 256 272 {ECO:0000244|PDB:3C4U}. FT HELIX 279 301 {ECO:0000244|PDB:3C4U}. SQ SEQUENCE 307 AA; 33773 MW; ADC5696C67C69A45 CRC64; MLVKGNEILL KAHKEGYGVG AFNFVNFEML NAIFEAGNEE NSPLFIQTSE GAIKYMGIDM AVGMVKTMCE RYPHIPVALH LDHGTTFESC EKAVKAGFTS VMIDASHHAF EENLELTSKV VKMAHNAGVS VEAELGRLMG IEDNISVDEK DAVLVNPKEA EQFVKESQVD YLAPAIGTSH GAFKFKGEPK LDFERLQEVK RLTNIPLVLH GASAIPDNVR KSYLDAGGDL KGSKGVPFEF LQESVKGGIN KVNTDTDLRI AFIAEVRKVA NEDKSQFDLR KFFSPAQLAL KNVVKERMKL LGSANKI // ID AMPEP_HELPY Reviewed; 357 AA. AC O25681; DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Aminopeptidase HP_1037; DE EC=3.4.11.-; GN OrderedLocusNames=HP_1037, C694_05365; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, CATALYTIC ACTIVITY, RP SUBSTRATE SPECIFICITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Hydrolyzes the N-terminal amino acid residue from a CC polypeptide chain, with a preference for substrates containing CC multiple alanine residues. {ECO:0000269|PubMed:23825549}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence={ECO:0000250}; CC Note=Binds 2 cobalt ions per subunit. {ECO:0000250}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=1.38 mM for N-succinyl-Ala-Ala-Ala-Pro-Phe-p-nitroanilide CC {ECO:0000269|PubMed:23825549}; CC KM=7.56 mM for pyroglutamyl-Pro-Arg-p-nitroanilide CC {ECO:0000269|PubMed:23825549}; CC KM=1.12 mM for N-succinyl-Ala-Ala-Ala-p-nitroanilide CC {ECO:0000269|PubMed:23825549}; CC KM=7.43 mM for Phe-Arg-methylcoumarine amide CC {ECO:0000269|PubMed:23825549}; CC KM=4.06 mM for N-succinyl-Leu-Leu-Val-Tyr-methylcoumarine amide CC {ECO:0000269|PubMed:23825549}; CC Note=kcat is 1145 min(-1) and 122 min(-1) with N-succinyl-Ala- CC Ala-Ala-Pro-Phe-p-nitroanilide and N-succinyl-Ala-Ala-Ala-p- CC nitroanilide as substrate, respectively.; CC pH dependence: CC Optimum pH is 4.0-5.0. {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is about 40 degrees Celsius. CC {ECO:0000269|PubMed:23825549}; CC -!- SIMILARITY: Belongs to the peptidase M24B family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08080.1; -; Genomic_DNA. DR EMBL; CP003904; AFV42250.1; -; Genomic_DNA. DR PIR; E64649; E64649. DR RefSeq; NP_207827.1; NC_000915.1. DR RefSeq; WP_000677174.1; NC_018939.1. DR ProteinModelPortal; O25681; -. DR DIP; DIP-3255N; -. DR IntAct; O25681; 5. DR MINT; MINT-177228; -. DR STRING; 85962.HP1037; -. DR PaxDb; O25681; -. DR PRIDE; O25681; -. DR EnsemblBacteria; AAD08080; AAD08080; HP_1037. DR EnsemblBacteria; AFV42250; AFV42250; C694_05365. DR GeneID; 899572; -. DR KEGG; heo:C694_05365; -. DR KEGG; hpy:HP1037; -. DR PATRIC; 20593411; VBIHelPyl33062_1086. DR eggNOG; ENOG4105DC7; Bacteria. DR eggNOG; COG0006; LUCA. DR KO; K01262; -. DR OMA; HELPYIS; -. DR OrthoDB; EOG618QTW; -. DR BioCyc; HPY:HP1037-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.350.10; -; 1. DR Gene3D; 3.90.230.10; -; 1. DR InterPro; IPR029149; Creatin/AminoP/Spt16_NTD. DR InterPro; IPR028980; Creatinase/Aminopeptidase_P_N. DR InterPro; IPR000587; Creatinase_N. DR InterPro; IPR000994; Pept_M24_structural-domain. DR InterPro; IPR001131; Peptidase_M24B_aminopep-P_CS. DR Pfam; PF01321; Creatinase_N; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR SUPFAM; SSF53092; SSF53092; 1. DR SUPFAM; SSF55920; SSF55920; 1. DR PROSITE; PS00491; PROLINE_PEPTIDASE; 1. PE 1: Evidence at protein level; KW Aminopeptidase; Cobalt; Complete proteome; Hydrolase; Metal-binding; KW Metalloprotease; Protease; Reference proteome. FT CHAIN 1 357 Aminopeptidase HP_1037. FT /FTId=PRO_0000424562. FT METAL 215 215 Cobalt 2. {ECO:0000250}. FT METAL 226 226 Cobalt 1. {ECO:0000250}. FT METAL 226 226 Cobalt 2. {ECO:0000250}. FT METAL 301 301 Cobalt 1. {ECO:0000250}. FT METAL 330 330 Cobalt 1. {ECO:0000250}. FT METAL 344 344 Cobalt 1. {ECO:0000250}. FT METAL 344 344 Cobalt 2. {ECO:0000250}. SQ SEQUENCE 357 AA; 40796 MW; 91BBA1FB30983E3B CRC64; MKGLERESHF TLNENAMFFE CAYSCDNALF LQLDDRSFFI TDSRYTQEAK ESVQPKNGVL AEVVESSDLV QSAIDLIVKS SVKKLFFDPN QVNLQTYKRL NSALGDKVAL EGVPSYHRQK RIIKNEHEIQ LLKKSQALNV EAFENFAEYV KKIFDEKESL SERYLQHKVK DFLTREGVYD LSFEPILALN ANASKPHALP SAKDFLKAEH SILLDMGIKY ERYCSDRTRT AFFDPKDFVF KREQSFKDKE RQKIYDIVKE AQEKAISGIR AGMTGKEADS LARGVISDYG YGQYFTHSTG HGIGLDIHEL PYISSRSETI LEEGMVFSVE PGIYIPGFFG VRIEDLVVIK NSRSELL // ID ALR_HELPY Reviewed; 377 AA. AC O25595; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 108. DE RecName: Full=Alanine racemase {ECO:0000255|HAMAP-Rule:MF_01201}; DE EC=5.1.1.1 {ECO:0000255|HAMAP-Rule:MF_01201}; GN Name=alr; OrderedLocusNames=HP_0941; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the interconversion of L-alanine and D- CC alanine. May also act on other amino acids. {ECO:0000255|HAMAP- CC Rule:MF_01201}. CC -!- CATALYTIC ACTIVITY: L-alanine = D-alanine. {ECO:0000255|HAMAP- CC Rule:MF_01201}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01201}; CC -!- PATHWAY: Amino-acid biosynthesis; D-alanine biosynthesis; D- CC alanine from L-alanine: step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_01201}. CC -!- SIMILARITY: Belongs to the alanine racemase family. CC {ECO:0000255|HAMAP-Rule:MF_01201}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07986.1; -; Genomic_DNA. DR PIR; E64637; E64637. DR RefSeq; NP_207733.1; NC_000915.1. DR RefSeq; WP_000917915.1; NC_000915.1. DR ProteinModelPortal; O25595; -. DR IntAct; O25595; 2. DR MINT; MINT-4059337; -. DR STRING; 85962.HP0941; -. DR PaxDb; O25595; -. DR PRIDE; O25595; -. DR EnsemblBacteria; AAD07986; AAD07986; HP_0941. DR GeneID; 899470; -. DR KEGG; hpy:HP0941; -. DR PATRIC; 20593185; VBIHelPyl33062_0978. DR eggNOG; ENOG4105CJ4; Bacteria. DR eggNOG; COG0787; LUCA. DR KO; K01775; -. DR OMA; CIDEALT; -. DR OrthoDB; EOG6PP9NJ; -. DR BioCyc; HPY:HP0941-MONOMER; -. DR UniPathway; UPA00042; UER00497. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008784; F:alanine racemase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030632; P:D-alanine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 2.40.37.10; -; 1. DR Gene3D; 3.20.20.10; -; 1. DR HAMAP; MF_01201; Ala_racemase; 1. DR InterPro; IPR000821; Ala_racemase. DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C. DR InterPro; IPR011079; Ala_racemase_C. DR InterPro; IPR001608; Ala_racemase_N. DR InterPro; IPR020622; Ala_racemase_pyridoxalP-BS. DR InterPro; IPR029066; PLP-binding_barrel. DR Pfam; PF00842; Ala_racemase_C; 1. DR Pfam; PF01168; Ala_racemase_N; 1. DR PRINTS; PR00992; ALARACEMASE. DR SMART; SM01005; Ala_racemase_C; 1. DR SUPFAM; SSF50621; SSF50621; 1. DR SUPFAM; SSF51419; SSF51419; 1. DR TIGRFAMs; TIGR00492; alr; 1. DR PROSITE; PS00395; ALANINE_RACEMASE; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Pyridoxal phosphate; Reference proteome. FT CHAIN 1 377 Alanine racemase. FT /FTId=PRO_0000114523. FT ACT_SITE 37 37 Proton acceptor; specific for D-alanine. FT {ECO:0000255|HAMAP-Rule:MF_01201}. FT ACT_SITE 271 271 Proton acceptor; specific for L-alanine. FT {ECO:0000255|HAMAP-Rule:MF_01201}. FT BINDING 135 135 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01201}. FT BINDING 319 319 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01201}. FT MOD_RES 37 37 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_01201}. SQ SEQUENCE 377 AA; 41729 MW; 2810E4A2982802FB CRC64; MLKRASFVEV DTASLRHNFS AVKSIVPKDA CVMAVVKANA YGAGAIKASE IFLQEGANYL GVATLDEALE LRSHFSKTPI LILGYSPNAN ASMLVDNDLS AMIFSLEQAE VFSQMALKSQ KRLKVHIKID TGMHRLGLEP NFKSIETIKK IRALKGLEIE GIFTHLSNAD AKIKTHAKNQ MKAFNAFLEQ LLDQKIEFQY RHAYNSAGIL SLCNGNENRL LNLYRPGIML YGFYPSNGMK ESCPTILKNV ISLKAQIVQI RSVKKGEFIG YGEHFYTNEE TLVGVLALGY ADGLMRALGN RIQVAINNQL APLIGKVCMD QCFVKLNNIQ AKEGDEVILF GDKSAKANDA SEIXALLNTI AYETISTLSK RLERVYI // ID AN36_HELPY Reviewed; 329 AA. AC P94851; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-MAY-2016, entry version 90. DE RecName: Full=36 kDa antigen; GN OrderedLocusNames=HP_1488; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=Hp921023; RA Hocking D., Rothel L., Doidge C., Radcliff F., Lee A., Webb E.; RL Submitted (FEB-1997) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane CC protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the membrane fusion protein (MFP) CC (TC 8.A.1) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08523.1; -; Genomic_DNA. DR EMBL; U86610; AAB81283.1; -; Genomic_DNA. DR PIR; H64705; H64705. DR RefSeq; NP_208279.1; NC_000915.1. DR RefSeq; WP_000071821.1; NC_000915.1. DR ProteinModelPortal; P94851; -. DR DIP; DIP-3275N; -. DR IntAct; P94851; 4. DR MINT; MINT-166003; -. DR STRING; 85962.HP1488; -. DR PaxDb; P94851; -. DR PRIDE; P94851; -. DR EnsemblBacteria; AAD08523; AAD08523; HP_1488. DR GeneID; 899804; -. DR KEGG; heo:C694_07705; -. DR KEGG; hpy:HP1488; -. DR PATRIC; 20594387; VBIHelPyl33062_1562. DR eggNOG; ENOG4107V40; Bacteria. DR eggNOG; COG0845; LUCA. DR KO; K01993; -. DR KO; K02005; -. DR OMA; SARDIWQ; -. DR OrthoDB; EOG6H7FK5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032317; HlyD_D23. DR Pfam; PF16576; HlyD_D23; 1. PE 3: Inferred from homology; KW Complete proteome; Membrane; Reference proteome; Transmembrane; KW Transmembrane helix. FT CHAIN 1 329 36 kDa antigen. FT /FTId=PRO_0000201861. FT TRANSMEM 11 31 Helical. {ECO:0000255}. FT VARIANT 67 67 H -> R (in strain: Hp921023). FT VARIANT 256 256 E -> D (in strain: Hp921023). FT VARIANT 272 272 K -> R (in strain: Hp921023). FT VARIANT 274 274 T -> A (in strain: Hp921023). SQ SEQUENCE 329 AA; 36199 MW; B33A75727056DF87 CRC64; MSNSMLDKNK AILTGGGALL LGLIVLFYLA YRPKAEVLQG FLEAREYSVS SKVPGRIEKV FVKKGDHIKK GDLVFSISSP ELEAKLAQAE AGHKAAKALS DEVKRGSRDE TINSARDVWQ AAKSQATLAK ETYKRVQDLY DNGVASLQKR DEAYAAYEST KYNESAAYQK YKMALGGASS ESKIAAKAKE SAALGQVNEV ESYLKDVKAT APIDGEVSNV LLSGGELSPK GFPVVLMIDL KDSWLKISVP EKYLNEFKVG KEFEGYIPAL KKSTKFRVKY LSVMGDFATW KATNNSNTYD MKSYEVEAIP LEELENFRVG MSVLVTIKP // ID AK_HELPY Reviewed; 405 AA. AC O25827; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Aspartokinase; DE EC=2.7.2.4; DE AltName: Full=Aspartate kinase; GN Name=lysC; OrderedLocusNames=HP_1229; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-aspartate = ADP + 4-phospho-L- CC aspartate. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4. CC -!- PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de CC novo pathway; L-homoserine from L-aspartate: step 1/3. CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 1/5. CC -!- SIMILARITY: Belongs to the aspartokinase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 2 ACT domains. {ECO:0000255|PROSITE- CC ProRule:PRU01007}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08274.1; -; Genomic_DNA. DR PIR; E64673; E64673. DR RefSeq; NP_208021.1; NC_000915.1. DR RefSeq; WP_000909679.1; NC_018939.1. DR ProteinModelPortal; O25827; -. DR STRING; 85962.HP1229; -. DR PaxDb; O25827; -. DR PRIDE; O25827; -. DR EnsemblBacteria; AAD08274; AAD08274; HP_1229. DR GeneID; 899013; -. DR KEGG; heo:C694_06345; -. DR KEGG; hpy:HP1229; -. DR PATRIC; 20593829; VBIHelPyl33062_1285. DR eggNOG; ENOG4105CFH; Bacteria. DR eggNOG; COG0527; LUCA. DR KO; K00928; -. DR OMA; INIMMIS; -. DR OrthoDB; EOG6NSGHC; -. DR BioCyc; HPY:HP1229-MONOMER; -. DR UniPathway; UPA00034; UER00015. DR UniPathway; UPA00050; UER00461. DR UniPathway; UPA00051; UER00462. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004072; F:aspartate kinase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-UniPathway. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1160.10; -; 1. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR InterPro; IPR005260; Asp_kin_monofn. DR InterPro; IPR001341; Asp_kinase_dom. DR InterPro; IPR018042; Aspartate_kinase_CS. DR InterPro; IPR027795; GATS-like_ACT_dom. DR Pfam; PF00696; AA_kinase; 1. DR Pfam; PF01842; ACT; 1. DR Pfam; PF13840; ACT_7; 1. DR PIRSF; PIRSF000726; Asp_kin; 1. DR SUPFAM; SSF53633; SSF53633; 1. DR TIGRFAMs; TIGR00656; asp_kin_monofn; 1. DR TIGRFAMs; TIGR00657; asp_kinases; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS00324; ASPARTOKINASE; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; ATP-binding; Complete proteome; KW Diaminopimelate biosynthesis; Kinase; Lysine biosynthesis; KW Nucleotide-binding; Reference proteome; Repeat; Transferase. FT CHAIN 1 405 Aspartokinase. FT /FTId=PRO_0000066677. FT DOMAIN 267 344 ACT 1. {ECO:0000255|PROSITE- FT ProRule:PRU01007}. FT DOMAIN 345 405 ACT 2. {ECO:0000255|PROSITE- FT ProRule:PRU01007}. SQ SEQUENCE 405 AA; 44134 MW; 74723D671FF49395 CRC64; MLIVQKYGGT SMGSIERIHN VAQRVLESVT LGHQVVVVVS AMSGETDRLL EFGKNFSHNP NKREMDRIVS VGELVSSAAL SMALERYGHR AISLSGKEAG ILTSSHFQNA VIQSIDTKRI TELLEKNYIV VIAGFQGADI QGETTTLGRG GSDLSAVALA GALKAHLCEI YTDVDGVYTT DPRIEEKAQK IAQISYDEML ELASMGAKVL LNRSVELAKK LSVKLVTRNS FNHSEGTLIV AEKDFKGERM ETPIVSGIAL DKNQARVSME GVEDRPGIAA EIFGALAEYR INVDMIVQTI GRDGKTDLDF TIVKTQIEET KQALKPFLAQ MDSIDYDENI AKVSIVGVGM KSHSGVASIA FKALAKDNIN IMMISTSEIK ISVLIDIKYA ELAVRTLHAV YQLDQ // ID AMIE_HELPY Reviewed; 339 AA. AC O25067; O32644; DT 30-MAY-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Aliphatic amidase; DE EC=3.5.1.4; DE AltName: Full=Acylamide amidohydrolase; GN Name=amiE; OrderedLocusNames=HP_0294; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 96-106 AND RP 160-174, FUNCTION, AND CATALYTIC ACTIVITY. RC STRAIN=85P; RX PubMed=9364923; DOI=10.1111/j.1365-2958.1997.mmi536.x; RA Skouloubris S., Labigne A., De Reuse H.; RT "Identification and characterization of an aliphatic amidase in RT Helicobacter pylori."; RL Mol. Microbiol. 25:989-998(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP FUNCTION, CATALYTIC ACTIVITY, ENZYME REGULATION, BIOPHYSICOCHEMICAL RP PROPERTIES, SUBUNIT, AND MUTAGENESIS OF CYS-165 AND ASP-167. RX PubMed=11359566; DOI=10.1046/j.1365-2958.2001.02400.x; RA Skouloubris S., Labigne A., De Reuse H.; RT "The AmiE aliphatic amidase and AmiF formamidase of Helicobacter RT pylori: natural evolution of two enzyme paralogues."; RL Mol. Microbiol. 40:596-609(2001). RN [4] RP TRANSCRIPTIONAL REGULATION. RX PubMed=12499381; DOI=10.1074/jbc.M207542200; RA van Vliet A.H.M., Stoof J., Poppelaars S.W., Bereswill S., Homuth G., RA Kist M., Kuipers E.J., Kusters J.G.; RT "Differential regulation of amidase- and formamidase-mediated ammonia RT production by the Helicobacter pylori fur repressor."; RL J. Biol. Chem. 278:9052-9057(2003). CC -!- FUNCTION: Catalyzes the hydrolysis of short-chain aliphatic amides CC to their corresponding organic acids with release of ammonia. CC Hydrolyzes propionamide, acetamide and acrylamide, but has no CC activity with formamide or urea. The natural substrates of AmiE in CC its gastric environment are not known. Probably functions to CC ensure nitrogen supply to the bacteria. CC -!- FUNCTION: Also exhibits in vitro acyl transferase activity, CC transferring the acyl moiety of short-chain amides to CC hydroxylamine to form hydroxamates. The highest level of acyl CC transfer activity is observed with acetamide. CC -!- CATALYTIC ACTIVITY: A monocarboxylic acid amide + H(2)O = a CC monocarboxylate + NH(3). {ECO:0000269|PubMed:11359566, CC ECO:0000269|PubMed:9364923}. CC -!- ENZYME REGULATION: Inhibited by iodoacetate. CC {ECO:0000269|PubMed:11359566}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC pH dependence: CC Optimum pH is 7. {ECO:0000269|PubMed:11359566}; CC Temperature dependence: CC Optimum temperature is 55 degrees Celsius. CC {ECO:0000269|PubMed:11359566}; CC -!- SUBUNIT: Homotetramer. {ECO:0000269|PubMed:11359566}. CC -!- INDUCTION: Repressed by iron via the binding of the Fur protein to CC the amiE promoter. {ECO:0000269|PubMed:12499381}. CC -!- MISCELLANEOUS: Asp-167 is probably not involved in the catalytic CC mechanism, but is probably involved instead in maintenance of the CC structural integrity of the amidase. CC {ECO:0000305|PubMed:11359566}. CC -!- MISCELLANEOUS: Expression of the amiE gene is stimulated in a CC mutant deficient in urease activity, suggesting that production of CC this enzyme is regulated to maintain intracellular nitrogen CC balance in H.pylori. {ECO:0000305|PubMed:9364923}. CC -!- SIMILARITY: Belongs to the carbon-nitrogen hydrolase superfamily. CC Aliphatic amidase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 CN hydrolase domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; Y12252; CAA72932.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07363.1; -; Genomic_DNA. DR PIR; F64556; F64556. DR RefSeq; NP_207092.1; NC_000915.1. DR RefSeq; WP_001215729.1; NC_018939.1. DR ProteinModelPortal; O25067; -. DR SMR; O25067; 1-339. DR IntAct; O25067; 7. DR MINT; MINT-171290; -. DR STRING; 85962.HP0294; -. DR PaxDb; O25067; -. DR PRIDE; O25067; -. DR EnsemblBacteria; AAD07363; AAD07363; HP_0294. DR GeneID; 900109; -. DR KEGG; heo:C694_01485; -. DR KEGG; hpy:HP0294; -. DR PATRIC; 20591815; VBIHelPyl33062_0305. DR eggNOG; ENOG4105DCY; Bacteria. DR eggNOG; COG0388; LUCA. DR KO; K01426; -. DR OMA; KIMPWVP; -. DR OrthoDB; EOG6C5RKP; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004040; F:amidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IMP:CACAO. DR Gene3D; 3.60.110.10; -; 1. DR HAMAP; MF_01242; Aliphatic_amidase; 1. DR InterPro; IPR023719; Aliphatic_amidase. DR InterPro; IPR003010; C-N_Hydrolase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. PE 1: Evidence at protein level; KW Complete proteome; Direct protein sequencing; Hydrolase; KW Reference proteome. FT CHAIN 1 339 Aliphatic amidase. FT /FTId=PRO_0000204058. FT DOMAIN 13 277 CN hydrolase. FT ACT_SITE 59 59 Proton acceptor. {ECO:0000250}. FT ACT_SITE 133 133 Proton donor. {ECO:0000250}. FT ACT_SITE 165 165 Nucleophile. {ECO:0000250}. FT MUTAGEN 165 165 C->S,A: Loss of activity. FT {ECO:0000269|PubMed:11359566}. FT MUTAGEN 167 167 D->A: Loss of activity. FT {ECO:0000269|PubMed:11359566}. FT CONFLICT 29 30 NE -> EQ (in Ref. 1; CAA72932). FT {ECO:0000305}. FT CONFLICT 329 329 A -> D (in Ref. 1; CAA72932). FT {ECO:0000305}. SQ SEQUENCE 339 AA; 37713 MW; 7F70580FC7B50A92 CRC64; MRHGDISSSP DTVGVAVVNY KMPRLHTKNE VLENCRNIAK VIGGVKQGLP GLDLIIFPEY STHGIMYDRQ EMFDTAASVP GEETAIFAEA CKKNKVWGVF SLTGEKHEQA KKNPYNTLIL VNDKGEIVQK YRKILPWCPI ECWYPGDKTY VVDGPKGLKV SLIICDDGNY PEIWRDCAMR GAELIVRCQG YMYPAKEQQI AIVKAMAWAN QCYVAVANAT GFDGVYSYFG HSSIIGFDGH TLGECGEEEN GLQYAQLSVQ QIRDARKYDQ SQNQLFKLLH RGYSGVFASG DGDKGVAECP FEFYKTWVND PKKAQENVEK ITRPSVGVAA CPVGDLPTK // ID AMIF_HELPY Reviewed; 334 AA. AC O25836; DT 30-MAY-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Formamidase; DE EC=3.5.1.49; DE AltName: Full=Formamide amidohydrolase; GN Name=amiF; OrderedLocusNames=HP_1238; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, CATALYTIC ACTIVITY, ENZYME REGULATION, BIOPHYSICOCHEMICAL RP PROPERTIES, SUBUNIT, AND MUTAGENESIS OF CYS-166 AND ASP-168. RX PubMed=11359566; DOI=10.1046/j.1365-2958.2001.02400.x; RA Skouloubris S., Labigne A., De Reuse H.; RT "The AmiE aliphatic amidase and AmiF formamidase of Helicobacter RT pylori: natural evolution of two enzyme paralogues."; RL Mol. Microbiol. 40:596-609(2001). RN [3] RP ENZYME REGULATION, AND INDUCTION. RX PubMed=12499381; DOI=10.1074/jbc.M207542200; RA van Vliet A.H.M., Stoof J., Poppelaars S.W., Bereswill S., Homuth G., RA Kist M., Kuipers E.J., Kusters J.G.; RT "Differential regulation of amidase- and formamidase-mediated ammonia RT production by the Helicobacter pylori fur repressor."; RL J. Biol. Chem. 278:9052-9057(2003). CC -!- FUNCTION: Is an aliphatic amidase with a restricted substrate CC specificity, as it only hydrolyzes formamide. Probably involved in CC the nitrogen metabolism of H.pylori. CC {ECO:0000269|PubMed:11359566}. CC -!- CATALYTIC ACTIVITY: Formamide + H(2)O = formate + NH(3). CC {ECO:0000269|PubMed:11359566}. CC -!- ENZYME REGULATION: Inhibited by iodoacetate. Appears to be CC regulated by the fur protein, but this effect is not mediated at CC the transcriptional level. {ECO:0000269|PubMed:11359566, CC ECO:0000269|PubMed:12499381}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC pH dependence: CC Optimum pH is 6. {ECO:0000269|PubMed:11359566}; CC Temperature dependence: CC Optimum temperature is 45 degrees Celsius. CC {ECO:0000269|PubMed:11359566}; CC -!- SUBUNIT: Homotetramer. {ECO:0000269|PubMed:11359566}. CC -!- INDUCTION: Contrary to the other amidase AmiE, expression of amiF CC is not repressed by iron. {ECO:0000269|PubMed:12499381}. CC -!- MISCELLANEOUS: Asp-168 is probably not involved in the catalytic CC mechanism, but is probably involved instead in maintenance of the CC structural integrity of the amidase. CC {ECO:0000305|PubMed:11359566}. CC -!- MISCELLANEOUS: Expression of the amiF gene is stimulated in a CC mutant deficient in arginase activity, suggesting that production CC of this enzyme is regulated to maintain intracellular nitrogen CC balance in H.pylori. CC -!- SIMILARITY: Belongs to the carbon-nitrogen hydrolase superfamily. CC Aliphatic amidase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 CN hydrolase domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08283.1; -; Genomic_DNA. DR PIR; F64674; F64674. DR RefSeq; NP_208030.1; NC_000915.1. DR RefSeq; WP_000534771.1; NC_018939.1. DR PDB; 2DYU; X-ray; 1.75 A; A/B=1-334. DR PDB; 2DYV; X-ray; 2.00 A; A/B=1-334. DR PDB; 2E2K; X-ray; 2.50 A; A/B/C/D/E/F=1-334. DR PDB; 2E2L; X-ray; 2.29 A; A/B/C/D/E/F=1-334. DR PDBsum; 2DYU; -. DR PDBsum; 2DYV; -. DR PDBsum; 2E2K; -. DR PDBsum; 2E2L; -. DR ProteinModelPortal; O25836; -. DR SMR; O25836; 13-334. DR IntAct; O25836; 3. DR MINT; MINT-164907; -. DR STRING; 85962.HP1238; -. DR PaxDb; O25836; -. DR PRIDE; O25836; -. DR EnsemblBacteria; AAD08283; AAD08283; HP_1238. DR GeneID; 900367; -. DR KEGG; heo:C694_06390; -. DR KEGG; hpy:HP1238; -. DR PATRIC; 20593847; VBIHelPyl33062_1294. DR eggNOG; ENOG4105DCY; Bacteria. DR eggNOG; COG0388; LUCA. DR KO; K01455; -. DR OMA; VENNIYQ; -. DR OrthoDB; EOG6C5RKP; -. DR BRENDA; 3.5.1.49; 2604. DR EvolutionaryTrace; O25836; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004328; F:formamidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR HAMAP; MF_01243; Formamidase; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR InterPro; IPR022843; Formamidase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Hydrolase; Reference proteome. FT CHAIN 1 334 Formamidase. FT /FTId=PRO_0000204065. FT DOMAIN 14 287 CN hydrolase. FT ACT_SITE 60 60 Proton acceptor. {ECO:0000250}. FT ACT_SITE 133 133 Proton donor. {ECO:0000250}. FT ACT_SITE 166 166 Nucleophile. {ECO:0000250}. FT MUTAGEN 166 166 C->S,A: Loss of activity. FT {ECO:0000269|PubMed:11359566}. FT MUTAGEN 168 168 D->A: Loss of activity. FT {ECO:0000269|PubMed:11359566}. FT STRAND 14 19 {ECO:0000244|PDB:2DYU}. FT HELIX 29 49 {ECO:0000244|PDB:2DYU}. FT STRAND 53 57 {ECO:0000244|PDB:2DYU}. FT TURN 60 64 {ECO:0000244|PDB:2DYU}. FT TURN 68 72 {ECO:0000244|PDB:2DYU}. FT HELIX 74 76 {ECO:0000244|PDB:2DYU}. FT STRAND 80 82 {ECO:0000244|PDB:2DYU}. FT HELIX 83 95 {ECO:0000244|PDB:2DYU}. FT STRAND 98 105 {ECO:0000244|PDB:2DYU}. FT STRAND 115 121 {ECO:0000244|PDB:2DYU}. FT STRAND 127 132 {ECO:0000244|PDB:2DYU}. FT TURN 138 140 {ECO:0000244|PDB:2DYU}. FT HELIX 156 158 {ECO:0000244|PDB:2DYU}. FT STRAND 160 165 {ECO:0000244|PDB:2DYU}. FT HELIX 166 170 {ECO:0000244|PDB:2DYU}. FT HELIX 172 180 {ECO:0000244|PDB:2DYU}. FT STRAND 184 192 {ECO:0000244|PDB:2DYU}. FT STRAND 194 196 {ECO:0000244|PDB:2E2L}. FT HELIX 197 211 {ECO:0000244|PDB:2DYU}. FT STRAND 214 219 {ECO:0000244|PDB:2DYU}. FT STRAND 221 226 {ECO:0000244|PDB:2DYU}. FT STRAND 232 236 {ECO:0000244|PDB:2DYU}. FT STRAND 242 245 {ECO:0000244|PDB:2DYU}. FT STRAND 253 258 {ECO:0000244|PDB:2DYU}. FT HELIX 260 269 {ECO:0000244|PDB:2DYU}. FT HELIX 275 278 {ECO:0000244|PDB:2DYU}. FT TURN 284 288 {ECO:0000244|PDB:2DYU}. FT HELIX 297 303 {ECO:0000244|PDB:2DYU}. FT HELIX 312 314 {ECO:0000244|PDB:2DYU}. FT STRAND 318 320 {ECO:0000244|PDB:2DYU}. FT HELIX 321 323 {ECO:0000244|PDB:2DYU}. SQ SEQUENCE 334 AA; 37291 MW; B2845E0902A40420 CRC64; MGSIGSMGKP IEGFLVAAIQ FPVPIVNSRK DIDHNIESII RTLHATKAGY PGVELIIFPE YSTQGLNTAK WLSEEFLLDV PGKETELYAK ACKEAKVYGV FSIMERNPDS NKNPYNTAII IDPQGEIILK YRKLFPWNPI EPWYPGDLGM PVCEGPGGSK LAVCICHDGM IPELAREAAY KGCNVYIRIS GYSTQVNDQW ILTNRSNAWH NLMYTVSVNL AGYDNVFYYF GEGQICNFDG TTLVQGHRNP WEIVTGEIYP KMADNARLSW GLENNIYNLG HRGYVAKPGG EHDAGLTYIK DLAAGKYKLP WEDHMKIKDG SIYGYPTTGG RFGK // ID AMPA_HELPY Reviewed; 496 AA. AC O25294; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 105. DE RecName: Full=Cytosol aminopeptidase; DE EC=3.4.11.1; DE AltName: Full=Leucine aminopeptidase; DE Short=LAP; DE EC=3.4.11.10; DE AltName: Full=Leucyl aminopeptidase; GN Name=pepA; OrderedLocusNames=HP_0570; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Presumably involved in the processing and regular CC turnover of intracellular proteins. Catalyzes the removal of CC unsubstituted N-terminal amino acids from various peptides (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Release of an N-terminal amino acid, Xaa-|- CC Yaa-, in which Xaa is preferably Leu, but may be other amino acids CC including Pro although not Arg or Lys, and Yaa may be Pro. Amino CC acid amides and methyl esters are also readily hydrolyzed, but CC rates on arylamides are exceedingly low. CC -!- CATALYTIC ACTIVITY: Release of an N-terminal amino acid, CC preferentially leucine, but not glutamic or aspartic acids. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 2 manganese ions per subunit. {ECO:0000250}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the peptidase M17 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07638.1; -; Genomic_DNA. DR PIR; B64591; B64591. DR RefSeq; NP_207365.1; NC_000915.1. DR RefSeq; WP_000912892.1; NC_018939.1. DR PDB; 4ZI6; X-ray; 2.00 A; A/B/C/D/E/F=1-496. DR PDB; 4ZLA; X-ray; 1.90 A; A/B/C/D/E/F=1-496. DR PDBsum; 4ZI6; -. DR PDBsum; 4ZLA; -. DR ProteinModelPortal; O25294; -. DR DIP; DIP-3140N; -. DR IntAct; O25294; 2. DR MINT; MINT-181777; -. DR STRING; 85962.HP0570; -. DR PaxDb; O25294; -. DR PRIDE; O25294; -. DR EnsemblBacteria; AAD07638; AAD07638; HP_0570. DR GeneID; 899023; -. DR KEGG; heo:C694_02940; -. DR KEGG; hpy:HP0570; -. DR PATRIC; 20592413; VBIHelPyl33062_0595. DR eggNOG; ENOG4105BZ6; Bacteria. DR eggNOG; COG0260; LUCA. DR KO; K01255; -. DR OMA; NTPPMIG; -. DR OrthoDB; EOG6FV8B3; -. DR BioCyc; HPY:HP0570-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008235; F:metalloexopeptidase activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00181; Cytosol_peptidase_M17; 1. DR InterPro; IPR011356; Leucine_aapep/pepB. DR InterPro; IPR000819; Peptidase_M17_C. DR InterPro; IPR023042; Peptidase_M17_leu_NH2_pept. DR InterPro; IPR008283; Peptidase_M17_N. DR Pfam; PF00883; Peptidase_M17; 1. DR Pfam; PF02789; Peptidase_M17_N; 1. DR PRINTS; PR00481; LAMNOPPTDASE. DR PROSITE; PS00631; CYTOSOL_AP; 1. PE 1: Evidence at protein level; KW 3D-structure; Aminopeptidase; Complete proteome; Cytoplasm; Hydrolase; KW Manganese; Metal-binding; Protease; Reference proteome. FT CHAIN 1 496 Cytosol aminopeptidase. FT /FTId=PRO_0000165760. FT ACT_SITE 270 270 {ECO:0000255}. FT ACT_SITE 344 344 {ECO:0000255}. FT METAL 258 258 Manganese 2. {ECO:0000250}. FT METAL 263 263 Manganese 1. {ECO:0000250}. FT METAL 263 263 Manganese 2. {ECO:0000250}. FT METAL 281 281 Manganese 2. {ECO:0000250}. FT METAL 340 340 Manganese 1. {ECO:0000250}. FT METAL 342 342 Manganese 1. {ECO:0000250}. FT METAL 342 342 Manganese 2. {ECO:0000250}. FT STRAND 3 9 {ECO:0000244|PDB:4ZLA}. FT TURN 11 13 {ECO:0000244|PDB:4ZLA}. FT STRAND 17 24 {ECO:0000244|PDB:4ZLA}. FT HELIX 36 41 {ECO:0000244|PDB:4ZLA}. FT STRAND 46 52 {ECO:0000244|PDB:4ZLA}. FT TURN 53 56 {ECO:0000244|PDB:4ZLA}. FT STRAND 57 66 {ECO:0000244|PDB:4ZLA}. FT HELIX 67 82 {ECO:0000244|PDB:4ZLA}. FT STRAND 87 93 {ECO:0000244|PDB:4ZLA}. FT HELIX 104 118 {ECO:0000244|PDB:4ZLA}. FT STRAND 137 144 {ECO:0000244|PDB:4ZLA}. FT HELIX 156 182 {ECO:0000244|PDB:4ZLA}. FT TURN 185 187 {ECO:0000244|PDB:4ZLA}. FT HELIX 190 204 {ECO:0000244|PDB:4ZLA}. FT STRAND 207 211 {ECO:0000244|PDB:4ZLA}. FT HELIX 213 218 {ECO:0000244|PDB:4ZLA}. FT HELIX 222 228 {ECO:0000244|PDB:4ZLA}. FT TURN 229 234 {ECO:0000244|PDB:4ZLA}. FT STRAND 238 244 {ECO:0000244|PDB:4ZLA}. FT STRAND 252 263 {ECO:0000244|PDB:4ZLA}. FT HELIX 272 275 {ECO:0000244|PDB:4ZLA}. FT HELIX 278 282 {ECO:0000244|PDB:4ZLA}. FT HELIX 283 298 {ECO:0000244|PDB:4ZLA}. FT STRAND 301 313 {ECO:0000244|PDB:4ZLA}. FT STRAND 325 327 {ECO:0000244|PDB:4ZLA}. FT STRAND 333 335 {ECO:0000244|PDB:4ZLA}. FT HELIX 343 355 {ECO:0000244|PDB:4ZLA}. FT STRAND 360 366 {ECO:0000244|PDB:4ZLA}. FT HELIX 370 376 {ECO:0000244|PDB:4ZLA}. FT STRAND 380 386 {ECO:0000244|PDB:4ZLA}. FT HELIX 388 401 {ECO:0000244|PDB:4ZLA}. FT STRAND 404 407 {ECO:0000244|PDB:4ZLA}. FT HELIX 412 415 {ECO:0000244|PDB:4ZLA}. FT HELIX 416 418 {ECO:0000244|PDB:4ZLA}. FT STRAND 421 428 {ECO:0000244|PDB:4ZLA}. FT STRAND 430 433 {ECO:0000244|PDB:4ZLA}. FT HELIX 435 444 {ECO:0000244|PDB:4ZLA}. FT HELIX 449 454 {ECO:0000244|PDB:4ZLA}. FT STRAND 455 459 {ECO:0000244|PDB:4ZLA}. FT TURN 461 464 {ECO:0000244|PDB:4ZLA}. FT STRAND 465 468 {ECO:0000244|PDB:4ZLA}. FT STRAND 475 477 {ECO:0000244|PDB:4ZLA}. FT HELIX 482 494 {ECO:0000244|PDB:4ZLA}. SQ SEQUENCE 496 AA; 54433 MW; 565A0DBCA825FCC7 CRC64; MLKIKLEKTT FENAKAECSL VFIINKDFSH AWVKNKELLE TFKYEGEGVF LDQENKILYA GVKEDDVHLL RESACLAVRT LKKLAFKSVK VGVYTCGAHS KDNALLENLK ALFLGLKLGL YEYDTFKSNK KESVLKEAIV ALELHKPCEK TCANSLEKSA KEALKYAEIM TESLNIVKDL VNTPPMIGTP VYMAEVAQKV AKENHLEIHV HDEKFLEEKK MNAFLAVNKA SLSVNPPRLI HLVYKPKKAK KKIALVGKGL TYDCGGLSLK PADYMVTMKA DKGGGSAVIG LLNALAKLGV EAEVHGIIGA TENMIGPAAY KPDDILISKE GKSIEVRNTD AEGRLVLADC LSYAQDLNPD VIVDFATLTG ACVVGLGEFT SAIMGHNEEL KNLFETSGLE SGELLAKLPF NRHLKKLIES KIADVCNISS SRYGGAITAG LFLNEFIRDE FKDKWLHIDI AGPAYVEKEW DVNSFGASGA GVRACTAFVE ELLKKA // ID APBC_HELPY Reviewed; 368 AA. AC O24999; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 11-JAN-2001, sequence version 2. DT 16-MAR-2016, entry version 91. DE RecName: Full=Iron-sulfur cluster carrier protein {ECO:0000255|HAMAP-Rule:MF_02040}; GN Name=mrp; OrderedLocusNames=HP_0207; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds and transfers iron-sulfur (Fe-S) clusters to CC target apoproteins. Can hydrolyze ATP. {ECO:0000255|HAMAP- CC Rule:MF_02040}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_02040}. CC -!- SIMILARITY: In the N-terminal section; belongs to the MIP18 CC family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the Mrp/NBP35 CC ATP-binding proteins family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07271.1; -; Genomic_DNA. DR PIR; G64545; G64545. DR RefSeq; NP_207006.1; NC_000915.1. DR RefSeq; WP_000249737.1; NC_000915.1. DR RefSeq; WP_001862852.1; NC_018939.1. DR ProteinModelPortal; O24999; -. DR STRING; 85962.HP0207; -. DR PaxDb; O24999; -. DR EnsemblBacteria; AAD07271; AAD07271; HP_0207. DR GeneID; 899161; -. DR KEGG; heo:C694_01035; -. DR KEGG; hpy:HP0207; -. DR PATRIC; 20591635; VBIHelPyl33062_0217. DR eggNOG; ENOG4105D1F; Bacteria. DR eggNOG; COG0489; LUCA. DR KO; K03593; -. DR OMA; TMPFVWL; -. DR OrthoDB; EOG64XXQJ; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_02040; Mrp_NBP35; 1. DR InterPro; IPR002744; DUF59. DR InterPro; IPR019591; Mrp/NBP35_ATP-bd. DR InterPro; IPR000808; Mrp_CS. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR23264; PTHR23264; 1. DR Pfam; PF01883; DUF59; 1. DR Pfam; PF10609; ParA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS01215; MRP; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Hydrolase; Iron; Iron-sulfur; KW Metal-binding; Nucleotide-binding; Reference proteome. FT CHAIN 1 368 Iron-sulfur cluster carrier protein. FT /FTId=PRO_0000184935. FT NP_BIND 105 112 ATP. {ECO:0000255|HAMAP-Rule:MF_02040}. SQ SEQUENCE 368 AA; 40028 MW; 369E6804B2C48066 CRC64; MLTQEDVLNA LKTIIYPNFE KDIVSFGFVK NITLHDDQLG LLIEIPSSSE ETSAILRENI SKAMQEKGVK ALNLDIKTPP KPQAPKPTTK NLAKNIKHVV MISSGKGGVG KSTTSVNLSI ALANLNQKVG LLDADVYGPN IPRMMGLQSA DVIMDPSGKK LIPLKAFGVS VMSMGLLYDE GQSLIWRGPM LMRAIEQMLS DIIWGDLDVL VVDMPPGTGD AQLTLAQAVP LSAGITVTTP QIVSLDDAKR SLDMFKKLHI PIAGIVENMG SFVCEHCKKE SEIFGSNSMS ELLEAYHTQI LAKLPLEPKV RLGGDRGEPI VISHPNSVSA KIFEKMAQDL SAFLERVKKE KLADNKDIQP TQTHACSH // ID AROA_HELPY Reviewed; 429 AA. AC P56197; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; DE EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210}; DE AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; DE Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210}; DE Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210}; GN Name=aroA {ECO:0000255|HAMAP-Rule:MF_00210}; GN OrderedLocusNames=HP_0401; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the transfer of the enolpyruvyl moiety of CC phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- CC phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and CC inorganic phosphate. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- CATALYTIC ACTIVITY: Phosphoenolpyruvate + 3-phosphoshikimate = CC phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. CC {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 6/7. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SIMILARITY: Belongs to the EPSP synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00210, ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07470.1; -; Genomic_DNA. DR PIR; A64570; A64570. DR RefSeq; NP_207199.1; NC_000915.1. DR RefSeq; WP_000570922.1; NC_018939.1. DR ProteinModelPortal; P56197; -. DR DIP; DIP-3563N; -. DR IntAct; P56197; 2. DR MINT; MINT-183001; -. DR STRING; 85962.HP0401; -. DR PaxDb; P56197; -. DR PRIDE; P56197; -. DR EnsemblBacteria; AAD07470; AAD07470; HP_0401. DR GeneID; 900233; -. DR KEGG; heo:C694_02035; -. DR KEGG; hpy:HP0401; -. DR PATRIC; 20592041; VBIHelPyl33062_0414. DR eggNOG; ENOG4105CMY; Bacteria. DR eggNOG; COG0128; LUCA. DR KO; K00800; -. DR OMA; HTEIMLK; -. DR OrthoDB; EOG6Z6FZ4; -. DR BioCyc; HPY:HP0401-MONOMER; -. DR UniPathway; UPA00053; UER00089. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003866; F:3-phosphoshikimate 1-carboxyvinyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.65.10.10; -; 2. DR HAMAP; MF_00210; EPSP_synth; 1. DR InterPro; IPR001986; Enolpyruvate_Tfrase_dom. DR InterPro; IPR006264; EPSP_synthase. DR InterPro; IPR023193; EPSP_synthase_CS. DR InterPro; IPR013792; RNA3'P_cycl/enolpyr_Trfase_a/b. DR Pfam; PF00275; EPSP_synthase; 1. DR PIRSF; PIRSF000505; EPSPS; 1. DR SUPFAM; SSF55205; SSF55205; 1. DR TIGRFAMs; TIGR01356; aroA; 1. DR PROSITE; PS00104; EPSP_SYNTHASE_1; 1. DR PROSITE; PS00885; EPSP_SYNTHASE_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Cytoplasm; Reference proteome; Transferase. FT CHAIN 1 429 3-phosphoshikimate 1- FT carboxyvinyltransferase. FT /FTId=PRO_0000088260. FT REGION 11 12 Shikimate-3-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT REGION 80 83 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT ACT_SITE 302 302 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT ACT_SITE 330 330 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 16 16 Shikimate-3-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT BINDING 110 110 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 329 329 Shikimate-3-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT BINDING 333 333 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 385 385 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. SQ SEQUENCE 429 AA; 47241 MW; 19545753E081FDAE CRC64; MIELDINASD KSLSHRAVIF SLLAQKPCFV RNFLMGEDCL SSLEIAQNLG AKVENTAKNS FKITPPTTIK EPNKILNCNN SGTTMRLYSG LLSAQKGLFV LSGDNSLNAR PMKRIIEPLK AFGAKILGRE DNHFAPLVIL GSPLKACHYE SPIASAQVKS AFILSALQAQ GASTYKESEL SRNHTEIMLK SLGADIHNQD GVLKISPLEK PLEAFDFTIA NDPSSAFFFA LACAITPKSR LLLKNVLLNP TRIEAFEVLK KMGASIEYAI QSKDLEMIGD IYVEHAPLKA INIDQNIASL IDEIPALSIA MLFAKGKSMV KNAKDLRAKE SDRIKAVVSN FKALGIECEE FEDGFYVEGL EDISPLKQRF SRIKPPLIKS FNDHRIAMSF AVLTLALPLE IDNLECANIS FPQFKHLLNQ FKKGSLNGN // ID AROE_HELPY Reviewed; 263 AA. AC P56119; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 107. DE RecName: Full=Shikimate dehydrogenase (NADP(+)) {ECO:0000255|HAMAP-Rule:MF_00222}; DE Short=SDH {ECO:0000255|HAMAP-Rule:MF_00222}; DE EC=1.1.1.25 {ECO:0000255|HAMAP-Rule:MF_00222}; GN Name=aroE {ECO:0000255|HAMAP-Rule:MF_00222}; GN OrderedLocusNames=HP_1249; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.42 ANGSTROMS) IN COMPLEX WITH SHIKIMATE AND RP NADP, AND SUBUNIT. RA Cheng W.C., Lin S.C., Wang W.C.; RT "Crystal structure of the shikimate 5-dehydrogenase (aroE) from RT Helicobacter pylori in complex with shikimate and NADPH."; RL Submitted (NOV-2011) to the PDB data bank. RN [3] RP X-RAY CRYSTALLOGRAPHY (1.72 ANGSTROMS) IN COMPLEX WITH SHIKIMATE, AND RP SUBUNIT. RA Cheng W.C., Lin S.C., Wang W.C.; RT "Crystal structure of shikimate dehydrogenase (aroE) mutants from RT Helicobacter pylori in complex with shikimate."; RL Submitted (DEC-2012) to the PDB data bank. RN [4] RP X-RAY CRYSTALLOGRAPHY (2.85 ANGSTROMS) IN COMPLEX WITH SHIKIMATE. RA Cheng W.C., Chen T.J., Wang W.C.; RT "Crystal structure of shikimate dehydrogenase (aroE) clinical v2356 RT from Helicobacter pylori in complex with shikimate."; RL Submitted (JAN-2013) to the PDB data bank. CC -!- FUNCTION: Involved in the biosynthesis of the chorismate, which CC leads to the biosynthesis of aromatic amino acids. Catalyzes the CC reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to CC yield shikimate (SA). {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- CATALYTIC ACTIVITY: Shikimate + NADP(+) = 3-dehydroshikimate + CC NADPH. {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 4/7. {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00222, CC ECO:0000269|Ref.2, ECO:0000269|Ref.3}. CC -!- SIMILARITY: Belongs to the shikimate dehydrogenase family. CC {ECO:0000255|HAMAP-Rule:MF_00222}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08294.1; -; Genomic_DNA. DR PIR; A64676; A64676. DR RefSeq; NP_208041.1; NC_000915.1. DR RefSeq; WP_000769617.1; NC_018939.1. DR PDB; 3PHG; X-ray; 1.57 A; A/B=1-263. DR PDB; 3PHH; X-ray; 1.42 A; A=1-263. DR PDB; 3PHI; X-ray; 2.04 A; A/B=1-263. DR PDB; 3PHJ; X-ray; 2.30 A; A/B=1-263. DR PDB; 4FOO; X-ray; 2.55 A; A/B=1-263. DR PDB; 4FOS; X-ray; 1.72 A; A=1-263. DR PDB; 4FPX; X-ray; 2.40 A; A/B=1-263. DR PDB; 4FQ8; X-ray; 2.07 A; A/B=1-263. DR PDB; 4FR5; X-ray; 2.20 A; A/B=1-263. DR PDB; 4FSH; X-ray; 2.85 A; A/B=1-263. DR PDBsum; 3PHG; -. DR PDBsum; 3PHH; -. DR PDBsum; 3PHI; -. DR PDBsum; 3PHJ; -. DR PDBsum; 4FOO; -. DR PDBsum; 4FOS; -. DR PDBsum; 4FPX; -. DR PDBsum; 4FQ8; -. DR PDBsum; 4FR5; -. DR PDBsum; 4FSH; -. DR ProteinModelPortal; P56119; -. DR IntAct; P56119; 1. DR STRING; 85962.HP1249; -. DR PaxDb; P56119; -. DR PRIDE; P56119; -. DR EnsemblBacteria; AAD08294; AAD08294; HP_1249. DR GeneID; 898819; -. DR KEGG; heo:C694_06455; -. DR KEGG; hpy:HP1249; -. DR PATRIC; 20593875; VBIHelPyl33062_1308. DR eggNOG; ENOG4105E2X; Bacteria. DR eggNOG; COG0169; LUCA. DR KO; K00014; -. DR OMA; FGNPIKH; -. DR OrthoDB; EOG64R67G; -. DR BioCyc; HPY:HP1249-MONOMER; -. DR UniPathway; UPA00053; UER00087. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0004764; F:shikimate 3-dehydrogenase (NADP+) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019632; P:shikimate metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00222; Shikimate_DH_AroE; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR011342; Shikimate_DH. DR InterPro; IPR013708; Shikimate_DH-bd_N. DR InterPro; IPR022893; Shikimate_DH_fam. DR Pfam; PF08501; Shikimate_dh_N; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00507; aroE; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; KW Aromatic amino acid biosynthesis; Complete proteome; NADP; KW Oxidoreductase; Reference proteome. FT CHAIN 1 263 Shikimate dehydrogenase (NADP(+)). FT /FTId=PRO_0000136007. FT NP_BIND 125 129 NADP. {ECO:0000255|HAMAP-Rule:MF_00222, FT ECO:0000269|Ref.2}. FT REGION 16 18 Shikimate binding. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.3, ECO:0000269|Ref.4}. FT ACT_SITE 69 69 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000305|Ref.2, FT ECO:0000305|Ref.3}. FT BINDING 65 65 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.3, ECO:0000269|Ref.4}. FT BINDING 90 90 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.3}. FT BINDING 105 105 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.3}. FT BINDING 181 181 NADP; via amide nitrogen. FT {ECO:0000269|Ref.2}. FT BINDING 208 208 NADP; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00222}. FT BINDING 210 210 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.4}. FT BINDING 230 230 NADP; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00222, FT ECO:0000269|Ref.2}. FT BINDING 237 237 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222, ECO:0000269|Ref.2, FT ECO:0000269|Ref.3, ECO:0000269|Ref.4}. FT STRAND 3 12 {ECO:0000244|PDB:3PHH}. FT HELIX 18 33 {ECO:0000244|PDB:3PHH}. FT STRAND 34 43 {ECO:0000244|PDB:3PHH}. FT STRAND 46 48 {ECO:0000244|PDB:3PHH}. FT HELIX 50 56 {ECO:0000244|PDB:3PHH}. FT STRAND 59 64 {ECO:0000244|PDB:3PHH}. FT HELIX 69 75 {ECO:0000244|PDB:3PHH}. FT STRAND 76 79 {ECO:0000244|PDB:3PHH}. FT HELIX 81 85 {ECO:0000244|PDB:3PHH}. FT STRAND 91 95 {ECO:0000244|PDB:3PHH}. FT STRAND 98 102 {ECO:0000244|PDB:3PHH}. FT HELIX 105 112 {ECO:0000244|PDB:3PHH}. FT STRAND 120 124 {ECO:0000244|PDB:3PHH}. FT HELIX 128 139 {ECO:0000244|PDB:3PHH}. FT STRAND 143 147 {ECO:0000244|PDB:3PHH}. FT STRAND 149 151 {ECO:0000244|PDB:3PHG}. FT HELIX 154 160 {ECO:0000244|PDB:3PHH}. FT STRAND 163 167 {ECO:0000244|PDB:3PHH}. FT STRAND 174 178 {ECO:0000244|PDB:3PHH}. FT HELIX 183 185 {ECO:0000244|PDB:3PHG}. FT HELIX 192 201 {ECO:0000244|PDB:3PHH}. FT STRAND 203 208 {ECO:0000244|PDB:3PHH}. FT HELIX 215 222 {ECO:0000244|PDB:3PHH}. FT HELIX 231 245 {ECO:0000244|PDB:3PHH}. FT TURN 246 248 {ECO:0000244|PDB:3PHH}. FT HELIX 252 262 {ECO:0000244|PDB:3PHH}. SQ SEQUENCE 263 AA; 29273 MW; A34E5BD3E54C4937 CRC64; MKLKSFGVFG NPIKHSKSPL IHNACFLTFQ KELRFLGHYH PILLPLESHI KSEFLHLGLS GANVTLPFKE RAFQVCDKIK GIALECGAVN TLVLENDELV GYNTDALGFY LSLKQKNYQN ALILGAGGSA KALACELKKQ GLQVSVLNRS SRGLDFFQRL GCDCFMEPPK SAFDLIINAT SASLHNELPL NKEVLKGYFK EGKLAYDLAY GFLTPFLSLA KELKTPFQDG KDMLIYQAAL SFEKFSASQI PYSKAFEVMR SVF // ID APT_HELPY Reviewed; 179 AA. AC O25296; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; DE Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004}; DE EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004}; GN Name=apt {ECO:0000255|HAMAP-Rule:MF_00004}; OrderedLocusNames=HP_0572; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes a salvage reaction resulting in the formation CC of AMP, that is energically less costly than de novo synthesis. CC {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- CATALYTIC ACTIVITY: AMP + diphosphate = adenine + 5-phospho-alpha- CC D-ribose 1-diphosphate. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; CC AMP from adenine: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SIMILARITY: Belongs to the purine/pyrimidine CC phosphoribosyltransferase family. {ECO:0000255|HAMAP- CC Rule:MF_00004}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07640.1; -; Genomic_DNA. DR PIR; D64591; D64591. DR RefSeq; NP_207367.1; NC_000915.1. DR RefSeq; WP_001006135.1; NC_018939.1. DR ProteinModelPortal; O25296; -. DR IntAct; O25296; 2. DR STRING; 85962.HP0572; -. DR PaxDb; O25296; -. DR PRIDE; O25296; -. DR EnsemblBacteria; AAD07640; AAD07640; HP_0572. DR GeneID; 899280; -. DR KEGG; heo:C694_02950; -. DR KEGG; hpy:HP0572; -. DR PATRIC; 20592417; VBIHelPyl33062_0597. DR eggNOG; ENOG4109003; Bacteria. DR eggNOG; COG0503; LUCA. DR KO; K00759; -. DR OMA; ATVEIHA; -. DR OrthoDB; EOG6T4S55; -. DR BioCyc; HPY:HP0572-MONOMER; -. DR UniPathway; UPA00588; UER00646. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003999; F:adenine phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006168; P:adenine salvage; IEA:UniProtKB-HAMAP. DR GO; GO:0044209; P:AMP salvage; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.2020; -; 1. DR HAMAP; MF_00004; Aden_phosphoribosyltr; 1. DR InterPro; IPR005764; Ade_phspho_trans. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF00156; Pribosyltran; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR01090; apt; 1. DR PROSITE; PS00103; PUR_PYR_PR_TRANSFER; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Glycosyltransferase; Purine salvage; KW Reference proteome; Transferase. FT CHAIN 1 179 Adenine phosphoribosyltransferase. FT /FTId=PRO_0000149394. SQ SEQUENCE 179 AA; 19845 MW; A9EF879DDBA6F9AA CRC64; MNETLKEELL QSIREVKDYP KKGILFKDIT TLLNYPKLFN KLIDTLKKRY LALNIDFIVG IEARGFILGS ALAYALGVGF VPVRKKGKLP AHTLSQSYSL EYGSDSIEIH SDAFRGIKGV RVVLIDDLLA TGGTALASLE LIKALQAECI EACFLIGLKE LPGIQLLEER VKTFCLLEC // ID AROK_HELPY Reviewed; 162 AA. AC P56073; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=Shikimate kinase; DE Short=SK; DE EC=2.7.1.71; GN Name=aroK; OrderedLocusNames=HP_0157; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP INHIBITORS. RX PubMed=17098431; DOI=10.1016/j.bmc.2006.10.058; RA Han C., Zhang J., Chen L., Chen K., Shen X., Jiang H.; RT "Discovery of Helicobacter pylori shikimate kinase inhibitors: RT bioassay and molecular modeling."; RL Bioorg. Med. Chem. 15:656-662(2007). RN [3] RP X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) OF APOENYZME AND IN COMPLEX WITH RP SHIKIMATE, FUNCTION, CATALYTIC ACTIVITY, AND KINETIC PARAMETERS. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16291688; DOI=10.1128/JB.187.23.8156-8163.2005; RA Cheng W.-C., Chang Y.-N., Wang W.-C.; RT "Structural basis for shikimate-binding specificity of Helicobacter RT pylori shikimate kinase."; RL J. Bacteriol. 187:8156-8163(2005). CC -!- FUNCTION: Catalyzes the specific phosphorylation of the 3-hydroxyl CC group of shikimic acid using ATP as a cosubstrate. CC {ECO:0000269|PubMed:16291688}. CC -!- CATALYTIC ACTIVITY: ATP + shikimate = ADP + shikimate 3-phosphate. CC {ECO:0000269|PubMed:16291688}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000250}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=60 uM for shikimate {ECO:0000269|PubMed:16291688}; CC KM=101 uM for MgATP {ECO:0000269|PubMed:16291688}; CC Vmax=22 umol/min/mg enzyme toward shikimate CC {ECO:0000269|PubMed:16291688}; CC Vmax=26 umol/min/mg enzyme toward MgATP CC {ECO:0000269|PubMed:16291688}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 5/7. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the shikimate kinase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07220.1; -; Genomic_DNA. DR PIR; E64539; E64539. DR RefSeq; NP_206956.1; NC_000915.1. DR RefSeq; WP_001164290.1; NC_018939.1. DR PDB; 1ZUH; X-ray; 1.80 A; A=1-162. DR PDB; 1ZUI; X-ray; 2.30 A; A=1-162. DR PDB; 3HR7; X-ray; 1.80 A; A/B=1-162. DR PDB; 3MRS; X-ray; 2.40 A; A=1-162. DR PDB; 3MUF; X-ray; 2.30 A; A=1-162. DR PDB; 3N2E; X-ray; 2.53 A; A/B/C=1-162. DR PDBsum; 1ZUH; -. DR PDBsum; 1ZUI; -. DR PDBsum; 3HR7; -. DR PDBsum; 3MRS; -. DR PDBsum; 3MUF; -. DR PDBsum; 3N2E; -. DR ProteinModelPortal; P56073; -. DR SMR; P56073; 2-161. DR STRING; 85962.HP0157; -. DR BindingDB; P56073; -. DR ChEMBL; CHEMBL1075089; -. DR PaxDb; P56073; -. DR PRIDE; P56073; -. DR EnsemblBacteria; AAD07220; AAD07220; HP_0157. DR GeneID; 898985; -. DR KEGG; heo:C694_00785; -. DR KEGG; hpy:HP0157; -. DR PATRIC; 20591535; VBIHelPyl33062_0167. DR eggNOG; ENOG4105KHV; Bacteria. DR eggNOG; COG0703; LUCA. DR KO; K00891; -. DR OMA; LKTPHII; -. DR OrthoDB; EOG6SJJGD; -. DR BioCyc; HPY:HP0157-MONOMER; -. DR BRENDA; 2.7.1.71; 2604. DR SABIO-RK; P56073; -. DR UniPathway; UPA00053; UER00088. DR EvolutionaryTrace; P56073; -. DR PRO; PR:P56073; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004765; F:shikimate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00109; Shikimate_kinase; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR031322; Shikimate/glucono_kinase. DR InterPro; IPR000623; Shikimate_kinase/TSH1. DR InterPro; IPR023000; Shikimate_kinase_CS. DR Pfam; PF01202; SKI; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS01128; SHIKIMATE_KINASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; KW Aromatic amino acid biosynthesis; ATP-binding; Complete proteome; KW Cytoplasm; Kinase; Magnesium; Metal-binding; Nucleotide-binding; KW Reference proteome; Transferase. FT CHAIN 1 162 Shikimate kinase. FT /FTId=PRO_0000192387. FT NP_BIND 11 16 ATP. {ECO:0000250}. FT REGION 109 123 LID domain. FT METAL 15 15 Magnesium. {ECO:0000250}. FT BINDING 33 33 Substrate. FT BINDING 57 57 Substrate. FT BINDING 80 80 Substrate; via amide nitrogen. FT BINDING 116 116 ATP. {ECO:0000250}. FT BINDING 132 132 Substrate. FT STRAND 3 8 {ECO:0000244|PDB:1ZUH}. FT HELIX 14 25 {ECO:0000244|PDB:1ZUH}. FT STRAND 29 31 {ECO:0000244|PDB:1ZUH}. FT HELIX 32 40 {ECO:0000244|PDB:1ZUH}. FT HELIX 44 50 {ECO:0000244|PDB:1ZUH}. FT HELIX 53 68 {ECO:0000244|PDB:1ZUH}. FT STRAND 75 77 {ECO:0000244|PDB:1ZUH}. FT HELIX 80 84 {ECO:0000244|PDB:1ZUH}. FT HELIX 86 88 {ECO:0000244|PDB:1ZUH}. FT STRAND 91 98 {ECO:0000244|PDB:1ZUH}. FT HELIX 101 108 {ECO:0000244|PDB:1ZUH}. FT HELIX 110 114 {ECO:0000244|PDB:3MUF}. FT HELIX 117 120 {ECO:0000244|PDB:1ZUI}. FT HELIX 123 138 {ECO:0000244|PDB:1ZUH}. FT STRAND 141 145 {ECO:0000244|PDB:1ZUH}. FT HELIX 146 148 {ECO:0000244|PDB:1ZUH}. FT HELIX 150 159 {ECO:0000244|PDB:1ZUH}. SQ SEQUENCE 162 AA; 18411 MW; 3D4B5F74E1C958FE CRC64; MQHLVLIGFM GSGKSSLAQE LGLALKLEVL DTDMIISERV GLSVREIFEE LGEDNFRMFE KNLIDELKTL KTPHVISTGG GIVMHENLKG LGTTFYLKMD FETLIKRLNQ KEREKRPLLN NLTQAKELFE KRQALYEKNA SFIIDARGGL NNSLKQVLQF IA // ID AROB_HELPY Reviewed; 343 AA. AC P56081; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=3-dehydroquinate synthase; DE EC=4.2.3.4; GN Name=aroB; OrderedLocusNames=HP_0283; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate CC = 3-dehydroquinate + phosphate. CC -!- COFACTOR: CC Name=NAD(+); Xref=ChEBI:CHEBI:57540; Evidence={ECO:0000250}; CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence={ECO:0000250}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 divalent metal cation per subunit. Can use either CC Co(2+) or Zn(2+). {ECO:0000250}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 2/7. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the dehydroquinate synthase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07351.1; -; Genomic_DNA. DR PIR; C64555; C64555. DR RefSeq; NP_207081.1; NC_000915.1. DR RefSeq; WP_001156090.1; NC_018939.1. DR PDB; 3CLH; X-ray; 2.40 A; A/B=1-343. DR PDBsum; 3CLH; -. DR ProteinModelPortal; P56081; -. DR IntAct; P56081; 1. DR STRING; 85962.HP0283; -. DR PaxDb; P56081; -. DR PRIDE; P56081; -. DR EnsemblBacteria; AAD07351; AAD07351; HP_0283. DR GeneID; 900113; -. DR KEGG; heo:C694_01430; -. DR KEGG; hpy:HP0283; -. DR PATRIC; 20591793; VBIHelPyl33062_0294. DR eggNOG; ENOG4105D49; Bacteria. DR eggNOG; COG0337; LUCA. DR KO; K01735; -. DR OMA; VAIGMNM; -. DR OrthoDB; EOG6SJJGD; -. DR BioCyc; HPY:HP0283-MONOMER; -. DR BRENDA; 4.2.3.4; 2604. DR UniPathway; UPA00053; UER00085. DR EvolutionaryTrace; P56081; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003856; F:3-dehydroquinate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00110; DHQ_synthase; 1. DR InterPro; IPR016037; DHQ_synth_AroB. DR InterPro; IPR030963; DHQ_synth_fam. DR InterPro; IPR030960; DHQS/DOIS. DR Pfam; PF01761; DHQ_synthase; 1. DR PIRSF; PIRSF001455; DHQ_synth; 1. DR TIGRFAMs; TIGR01357; aroB; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; KW Aromatic amino acid biosynthesis; Cobalt; Complete proteome; KW Cytoplasm; Lyase; NAD; Reference proteome; Zinc. FT CHAIN 1 343 3-dehydroquinate synthase. FT /FTId=PRO_0000140745. FT STRAND 10 12 {ECO:0000244|PDB:3CLH}. FT STRAND 14 19 {ECO:0000244|PDB:3CLH}. FT STRAND 29 34 {ECO:0000244|PDB:3CLH}. FT HELIX 35 38 {ECO:0000244|PDB:3CLH}. FT HELIX 42 46 {ECO:0000244|PDB:3CLH}. FT STRAND 54 59 {ECO:0000244|PDB:3CLH}. FT HELIX 63 65 {ECO:0000244|PDB:3CLH}. FT HELIX 68 80 {ECO:0000244|PDB:3CLH}. FT STRAND 88 94 {ECO:0000244|PDB:3CLH}. FT HELIX 95 107 {ECO:0000244|PDB:3CLH}. FT STRAND 113 118 {ECO:0000244|PDB:3CLH}. FT HELIX 121 125 {ECO:0000244|PDB:3CLH}. FT STRAND 128 130 {ECO:0000244|PDB:3CLH}. FT STRAND 132 137 {ECO:0000244|PDB:3CLH}. FT STRAND 140 147 {ECO:0000244|PDB:3CLH}. FT STRAND 151 155 {ECO:0000244|PDB:3CLH}. FT HELIX 160 162 {ECO:0000244|PDB:3CLH}. FT HELIX 165 182 {ECO:0000244|PDB:3CLH}. FT HELIX 184 192 {ECO:0000244|PDB:3CLH}. FT TURN 195 197 {ECO:0000244|PDB:3CLH}. FT HELIX 199 213 {ECO:0000244|PDB:3CLH}. FT TURN 225 230 {ECO:0000244|PDB:3CLH}. FT HELIX 231 240 {ECO:0000244|PDB:3CLH}. FT TURN 241 243 {ECO:0000244|PDB:3CLH}. FT HELIX 248 265 {ECO:0000244|PDB:3CLH}. FT HELIX 271 283 {ECO:0000244|PDB:3CLH}. FT STRAND 320 322 {ECO:0000244|PDB:3CLH}. FT HELIX 332 338 {ECO:0000244|PDB:3CLH}. SQ SEQUENCE 343 AA; 39120 MW; 5AEAC2F4DE816D13 CRC64; MQEILIPLKE KNYKVFLGEL PEIKLKQKAL IISDSIVAGL HLPYLLERLK ALEVRVCVIE SGEKYKNFHS LERILNNAFE MQLNRHSLMI ALGGGVISDM VGFASSIYFR GIDFINIPTT LLAQVDASVG GKTGINTPYG KNLIGSFHQP KAVYMDLAFL KTLEKREFQA GVAEIIKMAV CFDKNLVERL ETKDLKDCLE EVIFQSVNIK AQVVVQDEKE QNIRAGLNYG HTFGHAIEKE TDYERFLHGE AIAIGMRMAN DLALSLGMLT LKEYERIENL LKKFDLIFHY KILDLQKFYE RLFLDKKSEN KTIKFILPKG VGAFEVASHI PKETIIKVLE KWH // ID ASPA_HELPY Reviewed; 468 AA. AC P56149; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Aspartate ammonia-lyase; DE Short=Aspartase; DE EC=4.3.1.1; GN Name=aspA; OrderedLocusNames=HP_0649; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: L-aspartate = fumarate + NH(3). CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II fumarase/aspartase family. CC Aspartase subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07709.1; -; Genomic_DNA. DR PIR; A64601; A64601. DR RefSeq; NP_207443.1; NC_000915.1. DR RefSeq; WP_001217520.1; NC_018939.1. DR ProteinModelPortal; P56149; -. DR SMR; P56149; 1-453. DR DIP; DIP-3567N; -. DR IntAct; P56149; 2. DR MINT; MINT-188059; -. DR STRING; 85962.HP0649; -. DR PaxDb; P56149; -. DR PRIDE; P56149; -. DR EnsemblBacteria; AAD07709; AAD07709; HP_0649. DR GeneID; 900208; -. DR KEGG; heo:C694_03355; -. DR KEGG; hpy:HP0649; -. DR PATRIC; 20592583; VBIHelPyl33062_0680. DR eggNOG; ENOG4108IJ0; Bacteria. DR eggNOG; COG1027; LUCA. DR KO; K01744; -. DR OMA; EICENYV; -. DR OrthoDB; EOG6V1M4M; -. DR BioCyc; HPY:HP0649-MONOMER; -. DR BioCyc; RETL1328306-WGS:GSTH-6215-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008797; F:aspartate ammonia-lyase activity; IEA:UniProtKB-EC. DR GO; GO:0006531; P:aspartate metabolic process; IEA:InterPro. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:InterPro. DR Gene3D; 1.10.275.10; -; 1. DR InterPro; IPR004708; ApsA. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR018951; Fumarase_C_C. DR InterPro; IPR020557; Fumarate_lyase_CS. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR PANTHER; PTHR11444; PTHR11444; 1. DR Pfam; PF10415; FumaraseC_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SUPFAM; SSF48557; SSF48557; 1. DR TIGRFAMs; TIGR00839; aspA; 1. DR PROSITE; PS00163; FUMARATE_LYASES; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Reference proteome. FT CHAIN 1 468 Aspartate ammonia-lyase. FT /FTId=PRO_0000161342. FT REGION 138 140 Substrate binding. {ECO:0000250}. FT BINDING 99 99 Substrate. {ECO:0000250}. SQ SEQUENCE 468 AA; 51981 MW; 60111E869302836A CRC64; MRIEHDFIGQ MEISDEVYYG IQTLRASENF FITNDKLCSY PVFIKSFAQV KKAATLANVQ LGLIDEKLKI AICHACDLLI DGKYHDQFIV DMIQGGAGTS TNMNMNEVIA NLALEYMGHQ KGEYQFCHPN DHVNRSQSTN DAYPSALKIA IYERLSNLVA PMKALRDAFA QKAKEFAHVI KMGRTQLQDA VPMTLGQEFE TYALMVDRDI EQVLDARNWV RELNLGGTAI GTGINSHPDY RSLIEKKIQE VTGRPFVMAN NLIEATQSTG AYVQVSGVLK RIAVKLSKVC NDLRLLSSGP RAGLNEINLP KMQPGSSIMP GKVNPVIPEV VNQVCFAVIG NDLSVALAAE GGQLQLNVFE PVIAYKLFHS FVILGRAIET LTTKCVEGIT ANEKICHDYV FNSIGIVTAL NPHIGYEKSA MIAKEALKSD RSIYDIALEK KILTKEQLDD IFKPENMLSP HAFKKHKD // ID AROC_HELPY Reviewed; 365 AA. AC P56122; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 106. DE RecName: Full=Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300, ECO:0000303|PubMed:15095868}; DE Short=CS {ECO:0000255|HAMAP-Rule:MF_00300}; DE EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300}; DE AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; GN Name=aroC {ECO:0000255|HAMAP-Rule:MF_00300}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS) IN COMPLEX WITH FMN, COFACTOR, RP AND SUBUNIT. RX PubMed=15095868; DOI=10.1016/j.jmb.2003.12.072; RA Ahn H.J., Yoon H.J., Lee B., Suh S.W.; RT "Crystal structure of chorismate synthase: a novel FMN-binding protein RT fold and functional insights."; RL J. Mol. Biol. 336:903-915(2004). CC -!- FUNCTION: Catalyzes the anti-1,4-elimination of the C-3 phosphate CC and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate CC (EPSP) to yield chorismate, which is the branch point compound CC that serves as the starting substrate for the three terminal CC pathways of aromatic amino acid biosynthesis. This reaction CC introduces a second double bond into the aromatic ring system. CC {ECO:0000255|HAMAP-Rule:MF_00300}. CC -!- CATALYTIC ACTIVITY: 5-O-(1-carboxyvinyl)-3-phosphoshikimate = CC chorismate + phosphate. {ECO:0000255|HAMAP-Rule:MF_00300}. CC -!- COFACTOR: CC Name=FMNH2; Xref=ChEBI:CHEBI:57618; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00300, CC ECO:0000269|PubMed:15095868}; CC Note=Reduced FMN (FMNH(2)). {ECO:0000255|HAMAP-Rule:MF_00300, CC ECO:0000269|PubMed:15095868}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 7/7. {ECO:0000255|HAMAP-Rule:MF_00300}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_00300, CC ECO:0000269|PubMed:15095868}. CC -!- SIMILARITY: Belongs to the chorismate synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00300}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07726.1; -; Genomic_DNA. DR PIR; G64602; G64602. DR RefSeq; NP_207457.1; NC_000915.1. DR RefSeq; WP_001094036.1; NC_018939.1. DR PDB; 1UM0; X-ray; 1.95 A; A/B/C/D=1-365. DR PDB; 1UMF; X-ray; 2.25 A; A/B/C/D=1-365. DR PDBsum; 1UM0; -. DR PDBsum; 1UMF; -. DR ProteinModelPortal; P56122; -. DR SMR; P56122; 1-365. DR IntAct; P56122; 7. DR MINT; MINT-176132; -. DR STRING; 85962.HP0663; -. DR PaxDb; P56122; -. DR PRIDE; P56122; -. DR EnsemblBacteria; AAD07726; AAD07726; HP_0663. DR GeneID; 898986; -. DR KEGG; heo:C694_03430; -. DR KEGG; hpy:HP0663; -. DR PATRIC; 20592611; VBIHelPyl33062_0694. DR eggNOG; ENOG4105D10; Bacteria. DR eggNOG; COG0082; LUCA. DR KO; K01736; -. DR OMA; CIVQRAV; -. DR OrthoDB; EOG6WDSHT; -. DR BioCyc; HPY:HP0663-MONOMER; -. DR BRENDA; 4.2.3.5; 2604. DR UniPathway; UPA00053; UER00090. DR EvolutionaryTrace; P56122; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004107; F:chorismate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0010181; F:FMN binding; IDA:UniProtKB. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.60.150.10; -; 1. DR HAMAP; MF_00300; Chorismate_synth; 1. DR InterPro; IPR000453; Chorismate_synth. DR InterPro; IPR020541; Chorismate_synthase_CS. DR PANTHER; PTHR21085; PTHR21085; 1. DR Pfam; PF01264; Chorismate_synt; 1. DR PIRSF; PIRSF001456; Chorismate_synth; 1. DR SUPFAM; SSF103263; SSF103263; 1. DR TIGRFAMs; TIGR00033; aroC; 1. DR PROSITE; PS00787; CHORISMATE_SYNTHASE_1; 1. DR PROSITE; PS00788; CHORISMATE_SYNTHASE_2; 1. DR PROSITE; PS00789; CHORISMATE_SYNTHASE_3; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; KW Aromatic amino acid biosynthesis; Complete proteome; FAD; KW Flavoprotein; FMN; Lyase; NADP; Reference proteome. FT CHAIN 1 365 Chorismate synthase. FT /FTId=PRO_0000140596. FT NP_BIND 123 125 FMN. {ECO:0000255|HAMAP-Rule:MF_00300, FT ECO:0000269|PubMed:15095868}. FT NP_BIND 241 242 FMN. {ECO:0000255|HAMAP-Rule:MF_00300}. FT NP_BIND 296 300 FMN. {ECO:0000255|HAMAP-Rule:MF_00300, FT ECO:0000269|PubMed:15095868}. FT BINDING 46 46 NADP. {ECO:0000255|HAMAP-Rule:MF_00300}. FT BINDING 281 281 FMN; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00300}. FT BINDING 322 322 FMN. {ECO:0000255|HAMAP-Rule:MF_00300}. FT STRAND 6 12 {ECO:0000244|PDB:1UM0}. FT STRAND 18 26 {ECO:0000244|PDB:1UM0}. FT HELIX 36 46 {ECO:0000244|PDB:1UM0}. FT HELIX 56 59 {ECO:0000244|PDB:1UM0}. FT STRAND 62 65 {ECO:0000244|PDB:1UM0}. FT STRAND 67 70 {ECO:0000244|PDB:1UM0}. FT STRAND 79 84 {ECO:0000244|PDB:1UM0}. FT HELIX 106 113 {ECO:0000244|PDB:1UM0}. FT HELIX 126 145 {ECO:0000244|PDB:1UM0}. FT STRAND 148 157 {ECO:0000244|PDB:1UM0}. FT HELIX 167 172 {ECO:0000244|PDB:1UM0}. FT HELIX 180 195 {ECO:0000244|PDB:1UM0}. FT STRAND 202 212 {ECO:0000244|PDB:1UM0}. FT TURN 224 226 {ECO:0000244|PDB:1UM0}. FT HELIX 229 238 {ECO:0000244|PDB:1UM0}. FT STRAND 243 248 {ECO:0000244|PDB:1UM0}. FT HELIX 251 256 {ECO:0000244|PDB:1UM0}. FT HELIX 259 262 {ECO:0000244|PDB:1UM0}. FT STRAND 270 272 {ECO:0000244|PDB:1UM0}. FT TURN 275 278 {ECO:0000244|PDB:1UM0}. FT STRAND 289 295 {ECO:0000244|PDB:1UM0}. FT STRAND 305 309 {ECO:0000244|PDB:1UM0}. FT STRAND 314 317 {ECO:0000244|PDB:1UM0}. FT HELIX 328 349 {ECO:0000244|PDB:1UM0}. FT HELIX 350 352 {ECO:0000244|PDB:1UM0}. FT HELIX 355 362 {ECO:0000244|PDB:1UM0}. SQ SEQUENCE 365 AA; 40100 MW; 98ABC708E1909561 CRC64; MNTLGRFLRL TTFGESHGDV IGGVLDGMPS GIKIDYALLE NEMKRRQGGR NVFITPRKED DKVEITSGVF EDFSTGTPIG FLIHNQRARS KDYDNIKNLF RPSHADFTYF HKYGIRDFRG GGRSSARESA IRVAAGAFAK MLLREIGIVC ESGIIEIGGI KAKNYDFNHA LKSEIFALDE EQEEAQKTAI QNAIKNHDSI GGVALIRARS IKTNQKLPIG LGQGLYAKLD AKIAEAMMGL NGVKAVEIGK GVESSLLKGS EYNDLMDQKG FLSNRSGGVL GGMSNGEEII VRVHFKPTPS IFQPQRTIDI NGNECECLLK GRHDPCIAIR GSVVCESLLA LVLADMVLLN LTSKIEYLKT IYNEN // ID ASPG_HELPY Reviewed; 330 AA. AC O25424; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Probable L-asparaginase; DE Short=L-ASNase; DE EC=3.5.1.1; DE AltName: Full=L-asparagine amidohydrolase; GN Name=ansA; Synonyms=asn; OrderedLocusNames=HP_0723; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: L-asparagine + H(2)O = L-aspartate + NH(3). CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the asparaginase 1 family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 asparaginase/glutaminase domain. CC {ECO:0000255|PROSITE-ProRule:PRU01068}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07772.1; -; Genomic_DNA. DR PIR; C64610; C64610. DR RefSeq; NP_207517.1; NC_000915.1. DR RefSeq; WP_000068360.1; NC_000915.1. DR ProteinModelPortal; O25424; -. DR SMR; O25424; 6-330. DR DIP; DIP-3115N; -. DR IntAct; O25424; 1. DR MINT; MINT-186645; -. DR STRING; 85962.HP0723; -. DR PaxDb; O25424; -. DR PRIDE; O25424; -. DR EnsemblBacteria; AAD07772; AAD07772; HP_0723. DR GeneID; 898763; -. DR KEGG; heo:C694_03720; -. DR KEGG; hpy:HP0723; -. DR PATRIC; 20592733; VBIHelPyl33062_0755. DR eggNOG; ENOG4105HDK; Bacteria. DR eggNOG; COG0252; LUCA. DR KO; K01424; -. DR OMA; DKYDWIV; -. DR OrthoDB; EOG6VTK47; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004067; F:asparaginase activity; IEA:UniProtKB-EC. DR GO; GO:0006528; P:asparagine metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1170; -; 1. DR Gene3D; 3.40.50.40; -; 1. DR InterPro; IPR004550; AsnASE_II. DR InterPro; IPR006034; Asparaginase/glutaminase. DR InterPro; IPR020827; Asparaginase/glutaminase_AS1. DR InterPro; IPR027475; Asparaginase/glutaminase_AS2. DR InterPro; IPR027473; L-asparaginase_C. DR InterPro; IPR027474; L-asparaginase_N. DR Pfam; PF00710; Asparaginase; 1. DR PIRSF; PIRSF001220; L-ASNase_gatD; 1. DR PRINTS; PR00139; ASNGLNASE. DR SMART; SM00870; Asparaginase; 1. DR SUPFAM; SSF53774; SSF53774; 1. DR TIGRFAMs; TIGR00520; asnASE_II; 1. DR PROSITE; PS00144; ASN_GLN_ASE_1; 1. DR PROSITE; PS00917; ASN_GLN_ASE_2; 1. DR PROSITE; PS51732; ASN_GLN_ASE_3; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Hydrolase; Reference proteome. FT CHAIN 1 330 Probable L-asparaginase. FT /FTId=PRO_0000171081. FT DOMAIN 6 330 Asparaginase/glutaminase. FT {ECO:0000255|PROSITE-ProRule:PRU01068}. FT REGION 95 96 Substrate binding. {ECO:0000250}. FT ACT_SITE 16 16 O-isoaspartyl threonine intermediate. FT {ECO:0000255|PROSITE-ProRule:PRU10099, FT ECO:0000255|PROSITE-ProRule:PRU10100}. FT BINDING 62 62 Substrate. {ECO:0000250}. SQ SEQUENCE 330 AA; 35539 MW; 9A2BB6DC7ED9D7DB CRC64; MAQNLPTIAL LATGGTIAGS GASASLGSYK SGELGIKELL KAIPSLNRLA RIQGEQISNI GSQDMNEEVW FKLAKRAQEL LDDSRIQGVV ITHGTDTLEE SAYFLNLVLR STKPVVLVGA MRNAASLSAD GALNLYNAVS VALNEKSANK GVLVVMDDNI FSAREVIKTH TTHTSTFKAL NSGAIGSVYY GKTRYYMQPL RKHTTESEFS LSQLKTPLPK VDIIYTHAGM TPDLFQASLN SHAKGVVIAG VGNGNVSAGF LKAMQEASQM GVVIVRSSRV NSGEITSGEI DDKAFITSDN LNPQKARVLL QLALTKTNNK EKIQEMFEEY // ID AROQ_HELPY Reviewed; 167 AA. AC Q48255; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 09-DEC-2015, entry version 114. DE RecName: Full=3-dehydroquinate dehydratase; DE Short=3-dehydroquinase; DE EC=4.2.1.10; DE AltName: Full=Type II DHQase; GN Name=aroQ; OrderedLocusNames=HP_1038; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PARTIAL PROTEIN SEQUENCE. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=8912695; RA Bottomley J.R., Clayton C.L., Chalk P.A., Kleanthous C.; RT "Cloning, sequencing, expression, purification and preliminary RT characterization of a type II dehydroquinase from Helicobacter RT pylori."; RL Biochem. J. 319:559-565(1996). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 10-167 IN COMPLEX WITH RP SUBSTRATE, AND SUBUNIT. RX PubMed=12784220; DOI=10.1002/prot.10415; RA Lee B.I., Kwak J.E., Suh S.W.; RT "Crystal structure of the type II 3-dehydroquinase from Helicobacter RT pylori."; RL Proteins 51:616-617(2003). RN [4] RP X-RAY CRYSTALLOGRAPHY (1.5 ANGSTROMS) IN COMPLEXES WITH SUBSTRATE RP ANALOGS, AND SUBUNIT. RX PubMed=16480265; DOI=10.1021/jm0505361; RA Robinson D.A., Stewart K.A., Price N.C., Chalk P.A., Coggins J.R., RA Lapthorn A.J.; RT "Crystal structures of Helicobacter pylori type II dehydroquinase RT inhibitor complexes: new directions for inhibitor design."; RL J. Med. Chem. 49:1282-1290(2006). CC -!- FUNCTION: Catalyzes a trans-dehydration via an enolate CC intermediate. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 3-dehydroquinate = 3-dehydroshikimate + H(2)O. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 3/7. CC -!- SUBUNIT: Homododecamer. {ECO:0000269|PubMed:12784220, CC ECO:0000269|PubMed:16480265}. CC -!- SIMILARITY: Belongs to the type-II 3-dehydroquinase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08081.1; -; Genomic_DNA. DR EMBL; X98878; CAA67380.1; -; Genomic_DNA. DR PIR; S72447; S72447. DR RefSeq; NP_207828.1; NC_000915.1. DR RefSeq; WP_000699284.1; NC_018939.1. DR PDB; 1J2Y; X-ray; 2.60 A; A=1-167. DR PDB; 2C4V; X-ray; 2.50 A; A=1-167. DR PDB; 2C4W; X-ray; 1.55 A; A=1-167. DR PDB; 2C57; X-ray; 3.10 A; A/B/C/D/E/F/G/H/I/J/K/L=1-167. DR PDB; 2WKS; X-ray; 2.95 A; A/B/C/D/E/F=1-167. DR PDB; 2XB9; X-ray; 2.75 A; A/B/C=1-167. DR PDB; 2XD9; X-ray; 1.95 A; A/B/C=1-167. DR PDB; 2XDA; X-ray; 1.85 A; A=1-167. DR PDB; 4B6R; X-ray; 2.00 A; A/B/C=1-167. DR PDB; 4B6S; X-ray; 1.90 A; A/B/C=1-167. DR PDBsum; 1J2Y; -. DR PDBsum; 2C4V; -. DR PDBsum; 2C4W; -. DR PDBsum; 2C57; -. DR PDBsum; 2WKS; -. DR PDBsum; 2XB9; -. DR PDBsum; 2XD9; -. DR PDBsum; 2XDA; -. DR PDBsum; 4B6R; -. DR PDBsum; 4B6S; -. DR ProteinModelPortal; Q48255; -. DR SMR; Q48255; 1-158. DR DIP; DIP-3328N; -. DR IntAct; Q48255; 2. DR MINT; MINT-180311; -. DR STRING; 85962.HP1038; -. DR BindingDB; Q48255; -. DR ChEMBL; CHEMBL4680; -. DR PaxDb; Q48255; -. DR PRIDE; Q48255; -. DR EnsemblBacteria; AAD08081; AAD08081; HP_1038. DR GeneID; 899573; -. DR KEGG; heo:C694_05370; -. DR KEGG; hpy:HP1038; -. DR PATRIC; 20593413; VBIHelPyl33062_1087. DR eggNOG; ENOG4108Z38; Bacteria. DR eggNOG; COG0757; LUCA. DR KO; K03786; -. DR OMA; IPTIEVH; -. DR OrthoDB; EOG66MQVT; -. DR BioCyc; HPY:HP1038-MONOMER; -. DR BRENDA; 4.2.1.10; 2604. DR UniPathway; UPA00053; UER00086. DR EvolutionaryTrace; Q48255; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003855; F:3-dehydroquinate dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.9100; -; 1. DR HAMAP; MF_00169; AroQ; 1. DR InterPro; IPR001874; DHquinase_II. DR InterPro; IPR018509; DHquinase_II_CS. DR PANTHER; PTHR21272; PTHR21272; 1. DR Pfam; PF01220; DHquinase_II; 1. DR PIRSF; PIRSF001399; DHquinase_II; 1. DR ProDom; PD004527; DHquinase_II; 1. DR SUPFAM; SSF52304; SSF52304; 1. DR TIGRFAMs; TIGR01088; aroQ; 1. DR PROSITE; PS01029; DEHYDROQUINASE_II; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; KW Aromatic amino acid biosynthesis; Complete proteome; KW Direct protein sequencing; Lyase; Reference proteome. FT CHAIN 1 167 3-dehydroquinate dehydratase. FT /FTId=PRO_0000159905. FT REGION 103 104 Substrate binding. FT ACT_SITE 22 22 Proton acceptor. FT ACT_SITE 102 102 Proton donor. FT BINDING 76 76 Substrate. {ECO:0000269|PubMed:12784220}. FT BINDING 82 82 Substrate. {ECO:0000269|PubMed:12784220}. FT BINDING 89 89 Substrate. {ECO:0000269|PubMed:12784220}. FT BINDING 113 113 Substrate. {ECO:0000269|PubMed:12784220}. FT SITE 17 17 Transition state stabilizer. FT CONFLICT 156 156 K -> Q (in Ref. 1; CAA67380). FT {ECO:0000305}. FT STRAND 1 7 {ECO:0000244|PDB:2C4W}. FT HELIX 11 13 {ECO:0000244|PDB:2C4W}. FT TURN 14 16 {ECO:0000244|PDB:2C4W}. FT HELIX 20 22 {ECO:0000244|PDB:2C4W}. FT HELIX 27 40 {ECO:0000244|PDB:2C4W}. FT STRAND 45 51 {ECO:0000244|PDB:2C4W}. FT HELIX 55 66 {ECO:0000244|PDB:2C4W}. FT STRAND 67 69 {ECO:0000244|PDB:2C4W}. FT STRAND 72 76 {ECO:0000244|PDB:2C4W}. FT HELIX 78 82 {ECO:0000244|PDB:2C4W}. FT HELIX 85 92 {ECO:0000244|PDB:2C4W}. FT STRAND 94 96 {ECO:0000244|PDB:2C4W}. FT STRAND 98 104 {ECO:0000244|PDB:2C4W}. FT HELIX 106 108 {ECO:0000244|PDB:2C4W}. FT HELIX 111 113 {ECO:0000244|PDB:2C4W}. FT HELIX 117 121 {ECO:0000244|PDB:2C4W}. FT STRAND 122 129 {ECO:0000244|PDB:2C4W}. FT HELIX 132 152 {ECO:0000244|PDB:2C4W}. FT TURN 153 156 {ECO:0000244|PDB:2C4W}. SQ SEQUENCE 167 AA; 18483 MW; 1AEC60B924987F07 CRC64; MKILVIQGPN LNMLGHRDPR LYGMVTLDQI HEIMQTFVKQ GNLDVELEFF QTNFEGEIID KIQESVGSDY EGIIINPGAF SHTSIAIADA IMLAGKPVIE VHLTNIQARE EFRKNSYTGA ACGGVIMGFG PLGYNMALMA MVNILAEMKA FQEAQKNNPN NPINNQK // ID ATPF_HELPY Reviewed; 171 AA. AC P56086; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=ATP synthase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; DE AltName: Full=ATP synthase F(0) sector subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; DE AltName: Full=ATPase subunit I {ECO:0000255|HAMAP-Rule:MF_01398}; DE AltName: Full=F-type ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; DE Short=F-ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; GN Name=atpF {ECO:0000255|HAMAP-Rule:MF_01398}; GN OrderedLocusNames=HP_1136; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the CC presence of a proton or sodium gradient. F-type ATPases consist of CC two structural domains, F(1) containing the extramembraneous CC catalytic core and F(0) containing the membrane proton channel, CC linked together by a central stalk and a peripheral stalk. During CC catalysis, ATP synthesis in the catalytic domain of F(1) is CC coupled via a rotary mechanism of the central stalk subunits to CC proton translocation. {ECO:0000255|HAMAP-Rule:MF_01398}. CC -!- FUNCTION: Component of the F(0) channel, it forms part of the CC peripheral stalk, linking F(1) to F(0). {ECO:0000255|HAMAP- CC Rule:MF_01398}. CC -!- SUBUNIT: F-type ATPases have 2 components, F(1) - the catalytic CC core - and F(0) - the membrane proton channel. F(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) CC has three main subunits: a(1), b(2) and c(10-14). The alpha and CC beta chains form an alternating ring which encloses part of the CC gamma chain. F(1) is attached to F(0) by a central stalk formed by CC the gamma and epsilon chains, while a peripheral stalk is formed CC by the delta and b chains. {ECO:0000255|HAMAP-Rule:MF_01398}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01398}; Single-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01398}. CC -!- SIMILARITY: Belongs to the ATPase B chain family. CC {ECO:0000255|HAMAP-Rule:MF_01398}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08178.1; -; Genomic_DNA. DR PIR; H64661; H64661. DR RefSeq; NP_207927.1; NC_000915.1. DR RefSeq; WP_000498446.1; NC_018939.1. DR ProteinModelPortal; P56086; -. DR STRING; 85962.HP1136; -. DR PaxDb; P56086; -. DR PRIDE; P56086; -. DR EnsemblBacteria; AAD08178; AAD08178; HP_1136. DR GeneID; 899673; -. DR KEGG; heo:C694_05860; -. DR KEGG; hpy:HP1136; -. DR PATRIC; 20593617; VBIHelPyl33062_1188. DR eggNOG; ENOG4105YF2; Bacteria. DR eggNOG; COG0711; LUCA. DR KO; K02109; -. DR OMA; VGILWYF; -. DR OrthoDB; EOG6XQ3N3; -. DR BioCyc; HPY:HP1136-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01398; ATP_synth_b_bact; 1. DR InterPro; IPR028987; ATPase_B-like_membr. DR InterPro; IPR002146; ATPase_F0-cplx_b/b'su_bac. DR Pfam; PF00430; ATP-synt_B; 1. DR SUPFAM; SSF81573; SSF81573; 1. PE 3: Inferred from homology; KW ATP synthesis; Cell inner membrane; Cell membrane; CF(0); KW Complete proteome; Hydrogen ion transport; Ion transport; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 171 ATP synthase subunit b. FT /FTId=PRO_0000082376. FT TRANSMEM 2 22 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01398}. SQ SEQUENCE 171 AA; 19861 MW; CBDBE6C8591329B2 CRC64; MFVVKMVLGF LILLSPLCAT GLDISQTDII ERSLNFLLFV GILWYFSAKK LRSFLRSKSL EISKRLEEIQ AQLKVSKENK KKLLKELEQA KEKAELIVSD ANKEAYMITQ KYELQTKMDV ENLIKNSKAL MDLEVKKIKR ELVESVFKDL RESKKVSFNA QDCVNILKQR L // ID ATP6_HELPY Reviewed; 226 AA. AC P56085; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 113. DE RecName: Full=ATP synthase subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; DE AltName: Full=ATP synthase F0 sector subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; DE AltName: Full=F-ATPase subunit 6 {ECO:0000255|HAMAP-Rule:MF_01393}; GN Name=atpB {ECO:0000255|HAMAP-Rule:MF_01393}; GN OrderedLocusNames=HP_0828; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Key component of the proton channel; it plays a direct CC role in the translocation of protons across the membrane. CC {ECO:0000255|HAMAP-Rule:MF_01393}. CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic CC core - and CF(0) - the membrane proton channel. CF(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) CC has three main subunits: a(1), b(2) and c(9-12). The alpha and CC beta chains form an alternating ring which encloses part of the CC gamma chain. CF(1) is attached to CF(0) by a central stalk formed CC by the gamma and epsilon chains, while a peripheral stalk is CC formed by the delta and b chains. {ECO:0000255|HAMAP- CC Rule:MF_01393}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01393}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01393}. CC -!- SIMILARITY: Belongs to the ATPase A chain family. CC {ECO:0000255|HAMAP-Rule:MF_01393}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07878.1; -; Genomic_DNA. DR PIR; D64623; D64623. DR RefSeq; NP_207621.1; NC_000915.1. DR RefSeq; WP_000401225.1; NC_018939.1. DR ProteinModelPortal; P56085; -. DR STRING; 85962.HP0828; -. DR PaxDb; P56085; -. DR PRIDE; P56085; -. DR EnsemblBacteria; AAD07878; AAD07878; HP_0828. DR GeneID; 899042; -. DR KEGG; heo:C694_04245; -. DR KEGG; hpy:HP0828; -. DR PATRIC; 20592947; VBIHelPyl33062_0862. DR eggNOG; ENOG4107WJT; Bacteria. DR eggNOG; COG0356; LUCA. DR KO; K02108; -. DR OMA; TIMELIY; -. DR OrthoDB; EOG6K4054; -. DR BioCyc; HPY:HP0828-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 1.20.120.220; -; 1. DR HAMAP; MF_01393; ATP_synth_a_bact; 1. DR InterPro; IPR000568; ATPase_F0-cplx_asu. DR InterPro; IPR023011; ATPase_F0-cplx_asu_AS. DR PANTHER; PTHR11410; PTHR11410; 1. DR Pfam; PF00119; ATP-synt_A; 1. DR PRINTS; PR00123; ATPASEA. DR SUPFAM; SSF81336; SSF81336; 1. DR TIGRFAMs; TIGR01131; ATP_synt_6_or_A; 1. DR PROSITE; PS00449; ATPASE_A; 1. PE 3: Inferred from homology; KW ATP synthesis; Cell inner membrane; Cell membrane; CF(0); KW Complete proteome; Hydrogen ion transport; Ion transport; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 226 ATP synthase subunit a. FT /FTId=PRO_0000082057. FT TRANSMEM 18 38 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. FT TRANSMEM 79 99 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. FT TRANSMEM 105 125 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. FT TRANSMEM 134 154 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. FT TRANSMEM 179 199 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. FT TRANSMEM 201 221 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01393}. SQ SEQUENCE 226 AA; 25615 MW; D2D4DE0FBF640509 CRC64; MEHRVFTIAN FFSSNHDFIT GFFVVLTAVL MFLISLGASR KMQMVPMGLQ NVYESIISAI LSVAKDIIGE ELARKYFPLA GTIALYVFFS NMIGIIPGFE SPTASWSFTL VLALIVFFYY HFEGIRVQGF FKYFAHFAGP VKWLAPFMFP IEIISHFSRI VSLSFRLFGN IKGDDMFLLI MLLLVPWAVP VAPFMVLFFM GILQAFVFMI LTYVYLAGAV LTDEGH // ID ATPL_HELPY Reviewed; 105 AA. AC P56087; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 109. DE RecName: Full=ATP synthase subunit c {ECO:0000255|HAMAP-Rule:MF_01396}; DE AltName: Full=ATP synthase F(0) sector subunit c {ECO:0000255|HAMAP-Rule:MF_01396}; DE AltName: Full=F-type ATPase subunit c {ECO:0000255|HAMAP-Rule:MF_01396}; DE Short=F-ATPase subunit c {ECO:0000255|HAMAP-Rule:MF_01396}; DE AltName: Full=Lipid-binding protein {ECO:0000255|HAMAP-Rule:MF_01396}; GN Name=atpE {ECO:0000255|HAMAP-Rule:MF_01396}; GN OrderedLocusNames=HP_1212; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: F(1)F(0) ATP synthase produces ATP from ADP in the CC presence of a proton or sodium gradient. F-type ATPases consist of CC two structural domains, F(1) containing the extramembraneous CC catalytic core and F(0) containing the membrane proton channel, CC linked together by a central stalk and a peripheral stalk. During CC catalysis, ATP synthesis in the catalytic domain of F(1) is CC coupled via a rotary mechanism of the central stalk subunits to CC proton translocation. {ECO:0000255|HAMAP-Rule:MF_01396}. CC -!- FUNCTION: Key component of the F(0) channel; it plays a direct CC role in translocation across the membrane. A homomeric c-ring of CC between 10-14 subunits forms the central stalk rotor element with CC the F(1) delta and epsilon subunits. {ECO:0000255|HAMAP- CC Rule:MF_01396}. CC -!- SUBUNIT: F-type ATPases have 2 components, F(1) - the catalytic CC core - and F(0) - the membrane proton channel. F(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) CC has three main subunits: a(1), b(2) and c(10-14). The alpha and CC beta chains form an alternating ring which encloses part of the CC gamma chain. F(1) is attached to F(0) by a central stalk formed by CC the gamma and epsilon chains, while a peripheral stalk is formed CC by the delta and b chains. {ECO:0000255|HAMAP-Rule:MF_01396}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01396}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01396}. CC -!- MISCELLANEOUS: Dicyclohexylcarbodiimide (DCDD) binding to the CC active glutamate residue inhibits ATPase in vitro. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ATPase C chain family. CC {ECO:0000255|HAMAP-Rule:MF_01396}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08257.1; -; Genomic_DNA. DR PIR; D64671; D64671. DR RefSeq; NP_208004.1; NC_000915.1. DR RefSeq; WP_000669967.1; NC_018939.1. DR ProteinModelPortal; P56087; -. DR DIP; DIP-3478N; -. DR IntAct; P56087; 1. DR MINT; MINT-181700; -. DR STRING; 85962.HP1212; -. DR PaxDb; P56087; -. DR PRIDE; P56087; -. DR EnsemblBacteria; AAD08257; AAD08257; HP_1212. DR GeneID; 898904; -. DR KEGG; heo:C694_06270; -. DR KEGG; hpy:HP1212; -. DR PATRIC; 20593797; VBIHelPyl33062_1269. DR eggNOG; ENOG41084IH; Bacteria. DR eggNOG; COG0636; LUCA. DR KO; K02110; -. DR OMA; YANPFLG; -. DR OrthoDB; EOG68H8G3; -. DR BioCyc; HPY:HP1212-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW. DR GO; GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0008289; F:lipid binding; IEA:UniProtKB-KW. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro. DR Gene3D; 1.20.20.10; -; 1. DR HAMAP; MF_01396; ATP_synth_c_bact; 1. DR InterPro; IPR000454; ATPase_F0-cplx_csu. DR InterPro; IPR020537; ATPase_F0-cplx_csu_DDCD_BS. DR InterPro; IPR002379; ATPase_proteolipid_c-like_dom. DR Pfam; PF00137; ATP-synt_C; 1. DR PRINTS; PR00124; ATPASEC. DR SUPFAM; SSF81333; SSF81333; 1. DR PROSITE; PS00605; ATPASE_C; 1. PE 3: Inferred from homology; KW ATP synthesis; Cell inner membrane; Cell membrane; CF(0); KW Complete proteome; Hydrogen ion transport; Ion transport; KW Lipid-binding; Membrane; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 105 ATP synthase subunit c. FT /FTId=PRO_0000112149. FT TRANSMEM 32 52 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01396}. FT TRANSMEM 78 98 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01396}. FT SITE 84 84 Reversibly protonated during proton FT transport. {ECO:0000255|HAMAP- FT Rule:MF_01396}. SQ SEQUENCE 105 AA; 10686 MW; BA728D06144105A9 CRC64; MKFLALFFLA LVGVAFAHDG GMGGMDMIKS YSILGAMIGL GIAAFGGAIG MGNAAAATIT GTARNPGVGG KLLTTMFVAM AMIEAQVIYT LVFAIIAIYS NPFLS // ID ATGTP_HELPY Reviewed; 370 AA. AC O25711; DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=ATP/GTP phosphatase; DE Short=ATPase/GTPase; DE EC=3.6.1.-; DE EC=3.6.1.3; GN OrderedLocusNames=HP_1079, C694_05575; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, CATALYTIC ACTIVITY, RP SUBSTRATE SPECIFICITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Has nucleotide phosphatase activity toward ATP and GTP, CC but not toward CTP, TTP and ADP. {ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: GTP + H(2)O = GDP + phosphate. CC {ECO:0000269|PubMed:23825549}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=1.02 mM for ATP {ECO:0000269|PubMed:23825549}; CC KM=0.58 mM for GTP {ECO:0000269|PubMed:23825549}; CC Note=kcat is 9.3 min(-1) and 0.57 min(-1) with ATP and GTP as CC substrate, respectively.; CC pH dependence: CC Optimum pH is 6.0. {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is 45 degrees Celsius. CC {ECO:0000269|PubMed:23825549}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08125.1; -; Genomic_DNA. DR EMBL; CP003904; AFV42292.1; -; Genomic_DNA. DR PIR; G64654; G64654. DR RefSeq; NP_207870.1; NC_000915.1. DR RefSeq; WP_000616490.1; NC_018939.1. DR ProteinModelPortal; O25711; -. DR DIP; DIP-3250N; -. DR IntAct; O25711; 1. DR MINT; MINT-183500; -. DR STRING; 85962.HP1079; -. DR PaxDb; O25711; -. DR PRIDE; O25711; -. DR DNASU; 899615; -. DR EnsemblBacteria; AAD08125; AAD08125; HP_1079. DR EnsemblBacteria; AFV42292; AFV42292; C694_05575. DR GeneID; 899615; -. DR KEGG; heo:C694_05575; -. DR KEGG; hpy:HP1079; -. DR PATRIC; 20593497; VBIHelPyl33062_1128. DR eggNOG; ENOG41090JH; Bacteria. DR eggNOG; COG1106; LUCA. DR KO; K06926; -. DR OMA; NFPPIPN; -. DR OrthoDB; EOG64N9TC; -. DR BioCyc; HPY:HP1079-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-EC. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13304; AAA_21; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 1: Evidence at protein level; KW ATP-binding; Complete proteome; GTP-binding; Hydrolase; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 370 ATP/GTP phosphatase. FT /FTId=PRO_0000424563. SQ SEQUENCE 370 AA; 42920 MW; 7A8B5E5C839DDEDB CRC64; MIQSVRIKNF KNFKNTKIDG FTKLNIITGQ NNAGKSNLLE ALYYLVGKSM HPCTNVLEIY DNIRKEPLTS ESKSLMFYGL DTKEEIQIVT TLDNNQTLDL QIKFIASENQ KVIESQIIPT AEQTQMSSQL NFTLKKNNEE IYNDHLNIAK VPNFPPIPNQ SGYNRQFKNF DSNQLQKLLP FESAVIIPSD VVYRQAHMIQ AVSKICSNNQ LEEELNKHLN QFDNNIQAIS FNTNNQLKLK VKDIKEKVPL SVFGDGLKKY LHIVSAFMAD NAKTIYIDEV ENGLHFSRMR LLLKNTIDFI NNNKDGNLQV FMTTHSQEFI EILDQVIREK DFAHQTKLFC LKQDDQYVIP RTYYGENLEY YFENEENLFG // ID ATPG_HELPY Reviewed; 301 AA. AC P56082; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=ATP synthase gamma chain {ECO:0000255|HAMAP-Rule:MF_00815}; DE AltName: Full=ATP synthase F1 sector gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; DE AltName: Full=F-ATPase gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; GN Name=atpG {ECO:0000255|HAMAP-Rule:MF_00815}; GN OrderedLocusNames=HP_1133; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. The gamma chain is believed to be CC important in regulating ATPase activity and the flow of protons CC through the CF(0) complex. {ECO:0000255|HAMAP-Rule:MF_00815}. CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic CC core - and CF(0) - the membrane proton channel. CF(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) CC has three main subunits: a, b and c. {ECO:0000255|HAMAP- CC Rule:MF_00815}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00815}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00815}. CC -!- SIMILARITY: Belongs to the ATPase gamma chain family. CC {ECO:0000255|HAMAP-Rule:MF_00815}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08175.1; -; Genomic_DNA. DR PIR; E64661; E64661. DR RefSeq; NP_207924.1; NC_000915.1. DR RefSeq; WP_000002194.1; NC_018939.1. DR ProteinModelPortal; P56082; -. DR DIP; DIP-3116N; -. DR IntAct; P56082; 3. DR MINT; MINT-159836; -. DR STRING; 85962.HP1133; -. DR PaxDb; P56082; -. DR PRIDE; P56082; -. DR EnsemblBacteria; AAD08175; AAD08175; HP_1133. DR GeneID; 899670; -. DR KEGG; heo:C694_05845; -. DR KEGG; hpy:HP1133; -. DR PATRIC; 20593611; VBIHelPyl33062_1185. DR eggNOG; ENOG4105J80; Bacteria. DR eggNOG; COG0224; LUCA. DR KO; K02115; -. DR OMA; FLYTAQN; -. DR OrthoDB; EOG6R5C97; -. DR BioCyc; HPY:HP1133-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045261; C:proton-transporting ATP synthase complex, catalytic core F(1); IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00815; ATP_synth_gamma_bact; 1. DR InterPro; IPR000131; ATPase_F1-cplx_gsu. DR InterPro; IPR023633; ATPase_F1_gsu_dom. DR PANTHER; PTHR11693; PTHR11693; 1. DR Pfam; PF00231; ATP-synt; 1. DR PRINTS; PR00126; ATPASEGAMMA. DR SUPFAM; SSF52943; SSF52943; 1. DR TIGRFAMs; TIGR01146; ATPsyn_F1gamma; 1. PE 3: Inferred from homology; KW ATP synthesis; Cell inner membrane; Cell membrane; CF(1); KW Complete proteome; Hydrogen ion transport; Ion transport; Membrane; KW Reference proteome; Transport. FT CHAIN 1 301 ATP synthase gamma chain. FT /FTId=PRO_0000073295. SQ SEQUENCE 301 AA; 34128 MW; A6F49A2E50376F85 CRC64; MANLRDIRKK IGSVKNTQKI THAMKLVSTS KLRKAEEVAR NSRAYALKLD AVFDDVLSKM KNQGIEDIQS KYFRELERLE IKKVDIIFIT ADKGLCGGFN TNTIKKVLAC TNEYKEKDIK VRLRGIGKKG NEYFSFNGIE VLDKINNLSS MPNYERVQEF MKKVVEDYLS GKTDKVIIIH NGFKNMITQE IRVKTILPIG YKIIHQNPQP SETQETITSE PSGSEDEILD SLAEKYVEYS LYYALIDSLA AEHSARMQAM DTATNNAKDL VKTLTISYNK ARQEAITTEL VEINAGVEAL K // ID ATPB_HELPY Reviewed; 469 AA. AC P55988; O07676; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 118. DE RecName: Full=ATP synthase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; DE EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347}; DE AltName: Full=ATP synthase F1 sector subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; DE AltName: Full=F-ATPase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; GN Name=atpD {ECO:0000255|HAMAP-Rule:MF_01347}; GN OrderedLocusNames=HP_1132; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9199431; RA McGowan C.C., Cover T.L., Blaser M.J.; RT "Analysis of F1F0-ATPase from Helicobacter pylori."; RL Infect. Immun. 65:2640-2647(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. The catalytic sites are hosted CC primarily by the beta subunits. {ECO:0000255|HAMAP-Rule:MF_01347}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate + CC H(+)(Out). {ECO:0000255|HAMAP-Rule:MF_01347}. CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic CC core - and CF(0) - the membrane proton channel. CF(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) CC has three main subunits: a(1), b(2) and c(9-12). The alpha and CC beta chains form an alternating ring which encloses part of the CC gamma chain. CF(1) is attached to CF(0) by a central stalk formed CC by the gamma and epsilon chains, while a peripheral stalk is CC formed by the delta and b chains. {ECO:0000255|HAMAP- CC Rule:MF_01347}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01347}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01347}. CC -!- SIMILARITY: Belongs to the ATPase alpha/beta chains family. CC {ECO:0000255|HAMAP-Rule:MF_01347}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF004014; AAB61298.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08174.1; -; Genomic_DNA. DR PIR; D64661; D64661. DR RefSeq; NP_207923.1; NC_000915.1. DR RefSeq; WP_000646366.1; NC_000915.1. DR ProteinModelPortal; P55988; -. DR SMR; P55988; 5-466. DR DIP; DIP-3361N; -. DR IntAct; P55988; 2. DR MINT; MINT-162973; -. DR STRING; 85962.HP1132; -. DR PaxDb; P55988; -. DR PRIDE; P55988; -. DR EnsemblBacteria; AAD08174; AAD08174; HP_1132. DR GeneID; 899669; -. DR KEGG; hpy:HP1132; -. DR PATRIC; 20593609; VBIHelPyl33062_1184. DR eggNOG; ENOG4105C4J; Bacteria. DR eggNOG; COG0055; LUCA. DR KO; K02112; -. DR OMA; AEFGIYP; -. DR OrthoDB; EOG6HQSP3; -. DR BioCyc; HPY:HP1132-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045261; C:proton-transporting ATP synthase complex, catalytic core F(1); IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1140.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01347; ATP_synth_beta_bact; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR020003; ATPase_a/bsu_AS. DR InterPro; IPR005722; ATPase_F1-cplx_bsu. DR InterPro; IPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR004100; ATPase_F1_a/bsu_N. DR InterPro; IPR024034; ATPase_F1_bsu/V1_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00006; ATP-synt_ab; 1. DR Pfam; PF02874; ATP-synt_ab_N; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF47917; SSF47917; 1. DR SUPFAM; SSF50615; SSF50615; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01039; atpD; 1. DR PROSITE; PS00152; ATPASE_ALPHA_BETA; 1. PE 3: Inferred from homology; KW ATP synthesis; ATP-binding; Cell inner membrane; Cell membrane; CF(1); KW Complete proteome; Hydrogen ion transport; Hydrolase; Ion transport; KW Membrane; Nucleotide-binding; Reference proteome; Transport. FT CHAIN 1 469 ATP synthase subunit beta. FT /FTId=PRO_0000144444. FT NP_BIND 155 162 ATP. {ECO:0000255|HAMAP-Rule:MF_01347}. FT VARIANT 73 74 VI -> AV (in strain: CCUG 17874 / NCTC FT 11638). FT VARIANT 363 363 V -> I (in strain: CCUG 17874 / NCTC FT 11638). SQ SEQUENCE 469 AA; 51478 MW; CEF654B885738181 CRC64; MKAMEGKIIQ VLGPVVDVEF ESYLPAIFEA LDINFEVNGV QKSLVLEVAA HLGGNRVRAI AMDMTEGLVR NQVIKARGKM IEVPVGEEVL GRIFNVVGES IDNLEPLKPS LTWPIHRKAP SFEQQSTKTE MFETGIKVID LLAPYSKGGK VGLFGGAGVG KTVIIMELIH NVAYKHNGYS VFAGVGERTR EGNDLYFEMK EGGVLDKVAL CYGQMNEPPG ARNRIAFTGL TMAEYFRDEK GLDVLMFIDN IFRYAQSGAE MSALLGRIPS AVGYQPTLAG EMGKLQERIA STKNGSITSV QAVYVPADDL TDPAPASVFA HLDATTVLNR KIAEKGIYPA VDPLDSTSRI LSPQMIGEKH YEVATGIQQV LQKYKDLQDI IAILGLDELS EEDKKTVERA RKIEKFLSQP FFVAEVFTGS PGKYVTLQET LEGFGGILEG KYDHIPENAF YMVGSIQEVL EKAKNMKNS // ID ATPE_HELPY Reviewed; 123 AA. AC P56084; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-NOV-2015, entry version 106. DE RecName: Full=ATP synthase epsilon chain; DE AltName: Full=ATP synthase F1 sector epsilon subunit; DE AltName: Full=F-ATPase epsilon subunit; GN Name=atpC; OrderedLocusNames=HP_1131; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. {ECO:0000250}. CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic CC core - and CF(0) - the membrane proton channel. CF(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) CC has three main subunits: a, b and c. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; CC Peripheral membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ATPase epsilon chain family. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08173.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08173.1; ALT_INIT; Genomic_DNA. DR PIR; C64661; C64661. DR RefSeq; NP_207922.1; NC_000915.1. DR RefSeq; WP_000968112.1; NC_000915.1. DR RefSeq; WP_001863093.1; NC_018939.1. DR ProteinModelPortal; P56084; -. DR IntAct; P56084; 1. DR STRING; 85962.HP1131; -. DR PaxDb; P56084; -. DR EnsemblBacteria; AAD08173; AAD08173; HP_1131. DR GeneID; 899668; -. DR KEGG; heo:C694_05835; -. DR KEGG; hpy:HP1131; -. DR PATRIC; 20593607; VBIHelPyl33062_1183. DR eggNOG; ENOG41082MC; Bacteria. DR eggNOG; COG0355; LUCA. DR KO; K02114; -. DR OMA; EAVAINW; -. DR OrthoDB; EOG690MN9; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045261; C:proton-transporting ATP synthase complex, catalytic core F(1); IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 2.60.15.10; -; 1. DR HAMAP; MF_00530; ATP_synth_epsil_bac; 1. DR InterPro; IPR001469; ATPase_F1-cplx_dsu/esu. DR InterPro; IPR020546; ATPase_F1-cplx_dsu/esu_N. DR PANTHER; PTHR13822; PTHR13822; 1. DR Pfam; PF02823; ATP-synt_DE_N; 1. DR ProDom; PD000944; ATPase_F1-cplx_dsu/esu; 1. DR SUPFAM; SSF51344; SSF51344; 1. DR TIGRFAMs; TIGR01216; ATP_synt_epsi; 1. PE 3: Inferred from homology; KW ATP synthesis; Cell inner membrane; Cell membrane; CF(1); KW Complete proteome; Hydrogen ion transport; Ion transport; Membrane; KW Reference proteome; Transport. FT CHAIN 1 123 ATP synthase epsilon chain. FT /FTId=PRO_0000188144. SQ SEQUENCE 123 AA; 13357 MW; 19EDDA4D2B3A5461 CRC64; MALLKISVVV PEGEVYTGEV KSVVLPGVEG EFGVLYGHSN MITLLQAGVI EIETENQKEH IAINWGYAEV TNERVDILAD GAVFIKKESD DRDDAISRAK KLLEDASSDR LAVSSVLAKI ESL // ID ATPA_HELPY Reviewed; 503 AA. AC P55987; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 121. DE RecName: Full=ATP synthase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; DE EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01346}; DE AltName: Full=ATP synthase F1 sector subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; DE AltName: Full=F-ATPase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; GN Name=atpA {ECO:0000255|HAMAP-Rule:MF_01346}; GN OrderedLocusNames=HP_1134; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. The alpha chain is a regulatory CC subunit. {ECO:0000255|HAMAP-Rule:MF_01346}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate + CC H(+)(Out). {ECO:0000255|HAMAP-Rule:MF_01346}. CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic CC core - and CF(0) - the membrane proton channel. CF(1) has five CC subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) CC has three main subunits: a(1), b(2) and c(9-12). The alpha and CC beta chains form an alternating ring which encloses part of the CC gamma chain. CF(1) is attached to CF(0) by a central stalk formed CC by the gamma and epsilon chains, while a peripheral stalk is CC formed by the delta and b chains. {ECO:0000255|HAMAP- CC Rule:MF_01346}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01346}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01346}. CC -!- SIMILARITY: Belongs to the ATPase alpha/beta chains family. CC {ECO:0000255|HAMAP-Rule:MF_01346}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08176.1; -; Genomic_DNA. DR PIR; F64661; F64661. DR RefSeq; NP_207925.1; NC_000915.1. DR RefSeq; WP_000080506.1; NC_018939.1. DR ProteinModelPortal; P55987; -. DR SMR; P55987; 28-502. DR STRING; 85962.HP1134; -. DR PaxDb; P55987; -. DR PRIDE; P55987; -. DR EnsemblBacteria; AAD08176; AAD08176; HP_1134. DR GeneID; 899671; -. DR KEGG; heo:C694_05850; -. DR KEGG; hpy:HP1134; -. DR PATRIC; 20593613; VBIHelPyl33062_1186. DR eggNOG; ENOG4105CDG; Bacteria. DR eggNOG; COG0056; LUCA. DR KO; K02111; -. DR OMA; PVFCIYV; -. DR OrthoDB; EOG67X1S1; -. DR BioCyc; HPY:HP1134-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0045261; C:proton-transporting ATP synthase complex, catalytic core F(1); IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.30.20; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01346; ATP_synth_alpha_bact; 1. DR InterPro; IPR020003; ATPase_a/bsu_AS. DR InterPro; IPR023366; ATPase_asu-like. DR InterPro; IPR005294; ATPase_F1-cplx_asu. DR InterPro; IPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR004100; ATPase_F1_a/bsu_N. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR15184:SF3; PTHR15184:SF3; 1. DR Pfam; PF00006; ATP-synt_ab; 1. DR Pfam; PF00306; ATP-synt_ab_C; 1. DR Pfam; PF02874; ATP-synt_ab_N; 1. DR PIRSF; PIRSF039088; F_ATPase_subunit_alpha; 1. DR SUPFAM; SSF47917; SSF47917; 1. DR SUPFAM; SSF50615; SSF50615; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00962; atpA; 1. DR PROSITE; PS00152; ATPASE_ALPHA_BETA; 1. PE 3: Inferred from homology; KW ATP synthesis; ATP-binding; Cell inner membrane; Cell membrane; CF(1); KW Complete proteome; Hydrogen ion transport; Hydrolase; Ion transport; KW Membrane; Nucleotide-binding; Reference proteome; Transport. FT CHAIN 1 503 ATP synthase subunit alpha. FT /FTId=PRO_0000144330. FT NP_BIND 170 177 ATP. {ECO:0000255|HAMAP-Rule:MF_01346}. FT SITE 363 363 Required for activity. FT {ECO:0000255|HAMAP-Rule:MF_01346}. SQ SEQUENCE 503 AA; 55143 MW; 2A4F3508860AAA75 CRC64; MSQLKLEEIS SVIEEKIKNF ELDCDMAEVG KVVSYADGVA KVYGLNGVMS YEVLEFETGD KGVAANLEED SVGVIVFGFG NNIKEGTSVK RTKSLMKVPV GDAVVGRVLN ALGEPIDGKG EIETNEFSLI EQKAPGIMDR KSVHEPLQTG IKAIDALVPI GRGQRELIIG DKQTGKTTVA IDAIINQKGQ NVICIYVAIG QKESTVAQVV RKLEEYGAME YSVVINASAS DSAAMQYLAP YSGVAMGEYF RDHARHALII YDDLSKHAVA YREISLILRR PPGREAFPGD VFYIHSRLLE RAAKLCDEKG AGSLTALPIV ETQAGDVSAY IPTNIISITD GQIFLETDLF YSGIRPAINV GLSVSRVGGA AQIKATKQVS GTLRLDLAQY RELQAFTQFA SDLDEASKKQ LERGQRMVEV LKQAPYSPLP IEKQVVIIYA GAKGFLDSVS VKKVVDFEEQ LHPFLEAKYP QVLEEIHTKK ALDKDLEAML RKVLEEFKLT YSE // ID BAMA_HELPY Reviewed; 916 AA. AC O25369; DT 13-JUN-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 74. DE RecName: Full=Outer membrane protein assembly factor BamA {ECO:0000255|HAMAP-Rule:MF_01430}; DE Flags: Precursor; GN Name=bamA {ECO:0000255|HAMAP-Rule:MF_01430}; GN OrderedLocusNames=HP_0655; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the outer membrane protein assembly complex, CC which is involved in assembly and insertion of beta-barrel CC proteins into the outer membrane. {ECO:0000255|HAMAP- CC Rule:MF_01430}. CC -!- SUBUNIT: Part of the Bam complex. {ECO:0000255|HAMAP- CC Rule:MF_01430}. CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP- CC Rule:MF_01430}. CC -!- SIMILARITY: Belongs to the BamA family. {ECO:0000255|HAMAP- CC Rule:MF_01430}. CC -!- SIMILARITY: Contains 5 POTRA domains. {ECO:0000255|PROSITE- CC ProRule:PRU01115}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07720.1; -; Genomic_DNA. DR PIR; G64601; G64601. DR RefSeq; NP_207449.1; NC_000915.1. DR RefSeq; WP_010875513.1; NC_000915.1. DR ProteinModelPortal; O25369; -. DR IntAct; O25369; 13. DR MINT; MINT-164812; -. DR STRING; 85962.HP0655; -. DR PaxDb; O25369; -. DR PRIDE; O25369; -. DR EnsemblBacteria; AAD07720; AAD07720; HP_0655. DR GeneID; 899018; -. DR KEGG; hpy:HP0655; -. DR PATRIC; 20592595; VBIHelPyl33062_0686. DR eggNOG; ENOG4105E1Z; Bacteria. DR eggNOG; COG4775; LUCA. DR KO; K07277; -. DR OMA; TRGSFFY; -. DR OrthoDB; EOG6F81K6; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0051205; P:protein insertion into membrane; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01430; OM_assembly_BamA; 1. DR InterPro; IPR000184; Bac_surfAg_D15. DR InterPro; IPR023707; OM_assembly_BamA. DR InterPro; IPR010827; Surface_Ag_variable_number. DR Pfam; PF01103; Bac_surface_Ag; 1. DR Pfam; PF07244; POTRA; 4. DR PIRSF; PIRSF006076; OM_assembly_OMP85; 1. DR TIGRFAMs; TIGR03303; OM_YaeT; 1. DR PROSITE; PS51779; POTRA; 5. PE 3: Inferred from homology; KW Cell outer membrane; Complete proteome; Membrane; Reference proteome; KW Repeat; Signal; Transmembrane; Transmembrane beta strand. FT SIGNAL 1 20 {ECO:0000255|HAMAP-Rule:MF_01430}. FT CHAIN 21 916 Outer membrane protein assembly factor FT BamA. FT /FTId=PRO_0000417615. FT DOMAIN 70 137 POTRA 1. {ECO:0000255|PROSITE- FT ProRule:PRU01115}. FT DOMAIN 138 214 POTRA 2. {ECO:0000255|PROSITE- FT ProRule:PRU01115}. FT DOMAIN 219 309 POTRA 3. {ECO:0000255|PROSITE- FT ProRule:PRU01115}. FT DOMAIN 312 391 POTRA 4. {ECO:0000255|PROSITE- FT ProRule:PRU01115}. FT DOMAIN 394 466 POTRA 5. {ECO:0000255|PROSITE- FT ProRule:PRU01115}. SQ SEQUENCE 916 AA; 102672 MW; 186D8E301CD9408A CRC64; MKKLILSSLV FACINTSVEA LENDGSKPND LTSPKEASQE SQKNEAPKNE VQRNEAQKET PQSNQTPKEM KVKSISYVGL SYMSDMLANE IVKIRVGDIV DSKKIDTAVL ALFNQGYFKD VYATFEGGIL EFHFDEKARI AGVEIKGYGT EKEKDGLKSQ MGIKKGDTFD EQKLEHAKTA LKTALEGQGY YGSVVEVRTE KVSEGALLIV FDVNRGDSIY IKQSIYEGSA KLKRRMIESL SANKQRDFMG WMWGLNDGKL RLDQLEYDSM RIQDVYMRRG YLDAHISSPF LKTDFSTHDA KLHYKVKEGI QYRISDILIE IDNPVVPLKT LEKALKVKRK DVFNIEHLRA DAQILKTEIA DKGYAFAVVK PDLDKDEKNG LVKVIYRIEV GDMVYINDVI ISGNQRTSDR IIRRELLLGP KDKYNLTKLR NSENSLRRLG FFSKVKIEEK RVNSSLMDLL VSVEEGRTGQ LQFGLGYGSY GGLMLNGSVS ERNLFGTGQS MSLYANIATG GGRSYPGMPK GAGRMFAGNL SLTNPRIFDS WYSSTINLYA DYRISYQYIQ QGGGFGVNVG RMLGNRTHVS LGYNLNVTKL LGFSSPLYNR YYSSVNEVVS PRQCSTPASV IINRLSGGKT PLQPESCSSP GAITTSPEIR GIWDRDYHTP ITSSFTLDVS YDNTDDYYFP RNGVIFSSYA TMSGLPSSGT LNSWNGLGGN VRNTKVYGKF AAYHHLQKYL LIDLIARFKT QGGYIFRYNT DDYLPLNSTF YMGGVTTVRG FRNGSVTPKD EFGLWLGGDG IFTASTELSY GVLKAAKMRL AWFFDFGFLT FKTPTRGSFF YNAPVTTANF KDYGVIGAGF ERATWRASTG LQIEWISPMG PLVLIFPIAF FNQWGDGNGK KCKGLCFNPN MDDYTQHFEF SMGTRF // ID BIOB_HELPY Reviewed; 282 AA. AC O25956; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 113. DE RecName: Full=Biotin synthase {ECO:0000255|HAMAP-Rule:MF_01694}; DE EC=2.8.1.6 {ECO:0000255|HAMAP-Rule:MF_01694}; GN Name=bioB {ECO:0000255|HAMAP-Rule:MF_01694}; GN OrderedLocusNames=HP_1406; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of dethiobiotin (DTB) to biotin CC by the insertion of a sulfur atom into dethiobiotin via a radical- CC based mechanism. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- CATALYTIC ACTIVITY: Dethiobiotin + sulfur-(sulfur carrier) + 2 S- CC adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + CC (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 CC oxidized [2Fe-2S] ferredoxin. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01694}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01694}; CC -!- COFACTOR: CC Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01694}; CC Note=Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 CC cysteines and 1 arginine. {ECO:0000255|HAMAP-Rule:MF_01694}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from CC 7,8-diaminononanoate: step 2/2. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. Biotin CC synthase family. {ECO:0000255|HAMAP-Rule:MF_01694}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08448.1; -; Genomic_DNA. DR PIR; F64695; F64695. DR RefSeq; NP_208197.1; NC_000915.1. DR RefSeq; WP_001155649.1; NC_018939.1. DR ProteinModelPortal; O25956; -. DR DIP; DIP-3241N; -. DR IntAct; O25956; 4. DR MINT; MINT-177734; -. DR STRING; 85962.HP1406; -. DR PaxDb; O25956; -. DR PRIDE; O25956; -. DR EnsemblBacteria; AAD08448; AAD08448; HP_1406. DR GeneID; 899890; -. DR KEGG; heo:C694_07270; -. DR KEGG; hpy:HP1406; -. DR PATRIC; 20594201; VBIHelPyl33062_1471. DR eggNOG; ENOG4105CZF; Bacteria. DR eggNOG; COG0502; LUCA. DR KO; K01012; -. DR OMA; TCENTLR; -. DR OrthoDB; EOG622PMP; -. DR BioCyc; HPY:HP1406-MONOMER; -. DR UniPathway; UPA00078; UER00162. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0004076; F:biotin synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01694; BioB; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR010722; BATS_dom. DR InterPro; IPR002684; Biotin_synth/BioAB. DR InterPro; IPR024177; Biotin_synthase. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR007197; rSAM. DR Pfam; PF06968; BATS; 1. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF001619; Biotin_synth; 1. DR SMART; SM00876; BATS; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00433; bioB; 1. PE 3: Inferred from homology; KW 2Fe-2S; 4Fe-4S; Biotin biosynthesis; Complete proteome; Iron; KW Iron-sulfur; Metal-binding; Reference proteome; KW S-adenosyl-L-methionine; Transferase. FT CHAIN 1 282 Biotin synthase. FT /FTId=PRO_0000185555. FT METAL 17 17 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 21 21 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 24 24 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 61 61 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 96 96 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 154 154 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 221 221 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. SQ SEQUENCE 282 AA; 31475 MW; 8EAD8B801DF151EE CRC64; MQEIFLCSIS NVRSGDCKED CAYCTQSSHH QGAIKRYKFK DEKVVLQEAR ALRQLGALGF CLVTSGRELD DEKCEYIAKL AKAINQEELG LHLIACCGRA DLEQLEFLRD AGIHSYNHNL ETSQNFFPKI CSTHTWEERF ITCENALRAG LGLCSGGIFG LNESWEDRIE MLRALASLSP HTTPINFFIK NPVLPIDAET LSADEALECV LLAKEFLPNA RLMVAGGREV VFKDNDKKEA KLFEYGINAV VLGDYLTTKG KAPKKDIEKL LSYGLTMATS CH // ID BIOD_HELPY Reviewed; 218 AA. AC O24872; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=ATP-dependent dethiobiotin synthetase BioD; DE EC=6.3.3.3; DE AltName: Full=DTB synthetase; DE Short=DTBS; DE AltName: Full=Dethiobiotin synthase; GN Name=bioD; OrderedLocusNames=HP_0029; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.47 ANGSTROMS). RG Midwest center for structural genomics (MCSG); RT "Crystal structure of dethiobiotin synthetase (biod) from Helicobacter RT pylori."; RL Submitted (MAR-2009) to the PDB data bank. RN [3] RP X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) IN COMPLEX WITH SUBSTRATE RP ANALOGS, ATP AND MAGNESIUM IONS, AND SUBUNIT. RG Midwest center for structural genomics (MCSG); RT "Crystal structure of dethiobiotin synthetase (biod) from Helicobacter RT pylori cocrystallized with ATP."; RL Submitted (MAY-2010) to the PDB data bank. CC -!- FUNCTION: Catalyzes a mechanistically unusual reaction, the ATP- CC dependent insertion of CO2 between the N7 and N8 nitrogen atoms of CC 7,8-diaminopelargonic acid (DAPA) to form an ureido ring. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + 7,8-diaminononanoate + CO(2) = ADP + CC phosphate + dethiobiotin. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from CC 7,8-diaminononanoate: step 1/2. CC -!- SUBUNIT: Homodimer. {ECO:0000269|Ref.3}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the dethiobiotin synthetase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07100.1; -; Genomic_DNA. DR PIR; E64523; E64523. DR RefSeq; NP_206831.1; NC_000915.1. DR RefSeq; WP_000897490.1; NC_018939.1. DR PDB; 2QMO; X-ray; 1.47 A; A=1-218. DR PDB; 3MLE; X-ray; 2.80 A; A/B/C/D/E/F=1-218. DR PDB; 3QXC; X-ray; 1.34 A; A=1-218. DR PDB; 3QXH; X-ray; 1.36 A; A=1-218. DR PDB; 3QXJ; X-ray; 1.38 A; A=1-218. DR PDB; 3QXS; X-ray; 1.35 A; A=1-218. DR PDB; 3QXX; X-ray; 1.36 A; A=1-218. DR PDB; 3QY0; X-ray; 1.60 A; A=1-218. DR PDBsum; 2QMO; -. DR PDBsum; 3MLE; -. DR PDBsum; 3QXC; -. DR PDBsum; 3QXH; -. DR PDBsum; 3QXJ; -. DR PDBsum; 3QXS; -. DR PDBsum; 3QXX; -. DR PDBsum; 3QY0; -. DR ProteinModelPortal; O24872; -. DR SMR; O24872; 1-218. DR MINT; MINT-8303355; -. DR STRING; 85962.HP0029; -. DR PaxDb; O24872; -. DR PRIDE; O24872; -. DR EnsemblBacteria; AAD07100; AAD07100; HP_0029. DR GeneID; 899125; -. DR KEGG; heo:C694_00135; -. DR KEGG; hpy:HP0029; -. DR PATRIC; 20591257; VBIHelPyl33062_0030. DR eggNOG; ENOG4105E78; Bacteria. DR eggNOG; COG0132; LUCA. DR KO; K01935; -. DR OMA; TNTNAGK; -. DR OrthoDB; EOG66B3XT; -. DR BioCyc; HPY:HP0029-MONOMER; -. DR UniPathway; UPA00078; UER00161. DR EvolutionaryTrace; O24872; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004141; F:dethiobiotin synthase activity; ISS:UniProtKB. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00336; BioD; 1. DR InterPro; IPR004472; DTB_synth_BioD. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00347; bioD; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Biotin biosynthesis; Complete proteome; KW Cytoplasm; Ligase; Magnesium; Metal-binding; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 218 ATP-dependent dethiobiotin synthetase FT BioD. FT /FTId=PRO_0000187971. FT NP_BIND 9 15 ATP. FT NP_BIND 116 119 ATP. FT NP_BIND 151 154 Substrate. FT METAL 10 10 Magnesium 1. {ECO:0000250}. FT METAL 14 14 Magnesium 2. FT METAL 50 50 Magnesium 2. FT METAL 116 116 Magnesium 2. FT BINDING 35 35 ATP. FT BINDING 39 39 Substrate. FT BINDING 50 50 ATP. FT BINDING 63 63 ATP. FT BINDING 175 175 ATP. FT STRAND 1 8 {ECO:0000244|PDB:3QXC}. FT HELIX 13 26 {ECO:0000244|PDB:3QXC}. FT STRAND 31 34 {ECO:0000244|PDB:3QXC}. FT STRAND 37 40 {ECO:0000244|PDB:3MLE}. FT TURN 43 45 {ECO:0000244|PDB:3QXC}. FT HELIX 50 59 {ECO:0000244|PDB:3QXC}. FT HELIX 67 70 {ECO:0000244|PDB:3QXC}. FT STRAND 76 79 {ECO:0000244|PDB:3QXC}. FT HELIX 81 88 {ECO:0000244|PDB:3QXC}. FT HELIX 96 105 {ECO:0000244|PDB:3QXC}. FT HELIX 106 108 {ECO:0000244|PDB:3QXC}. FT STRAND 111 116 {ECO:0000244|PDB:3QXC}. FT STRAND 118 120 {ECO:0000244|PDB:3QXH}. FT STRAND 124 128 {ECO:0000244|PDB:3QXC}. FT HELIX 131 138 {ECO:0000244|PDB:3QXC}. FT STRAND 141 146 {ECO:0000244|PDB:3QXC}. FT HELIX 152 164 {ECO:0000244|PDB:3QXC}. FT STRAND 166 168 {ECO:0000244|PDB:3QXC}. FT STRAND 170 174 {ECO:0000244|PDB:3QXC}. FT HELIX 182 186 {ECO:0000244|PDB:3QXC}. FT HELIX 188 197 {ECO:0000244|PDB:3QXC}. FT HELIX 205 207 {ECO:0000244|PDB:3QXC}. FT HELIX 209 217 {ECO:0000244|PDB:3QXC}. SQ SEQUENCE 218 AA; 24407 MW; C818F3D3A88C6015 CRC64; MLFISATNTN AGKTTCARLL AQYCNACGVK TILLKPIETG VNDAINHSSD AHLFLQDNRL LDRSLTLKDI SFYRYHKVSA PLIAQQEEDP NAPIDTDNLT QRLHNFTKTY DLVIVEGAGG LCVPITLEEN MLDFALKLKA KMLLISHDNL GLINDCLLND FLLKSHQLDY KIAINLKGNN TAFHSISLPY IELFNTRSNN PIVIFQQSLK VLMSFALK // ID BAMD_HELPY Reviewed; 220 AA. AC O25930; DT 13-JUN-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 74. DE RecName: Full=Outer membrane protein assembly factor BamD {ECO:0000255|HAMAP-Rule:MF_00922}; DE Flags: Precursor; GN Name=bamD {ECO:0000255|HAMAP-Rule:MF_00922}; GN OrderedLocusNames=HP_1378; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the outer membrane protein assembly complex, CC which is involved in assembly and insertion of beta-barrel CC proteins into the outer membrane. {ECO:0000255|HAMAP- CC Rule:MF_00922}. CC -!- SUBUNIT: Part of the Bam complex. {ECO:0000255|HAMAP- CC Rule:MF_00922}. CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP- CC Rule:MF_00922}; Lipid-anchor {ECO:0000255|HAMAP-Rule:MF_00922}. CC -!- SIMILARITY: Belongs to the BamD family. {ECO:0000255|HAMAP- CC Rule:MF_00922}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08420.1; -; Genomic_DNA. DR PIR; B64692; B64692. DR RefSeq; NP_208169.1; NC_000915.1. DR RefSeq; WP_001237316.1; NC_018939.1. DR ProteinModelPortal; O25930; -. DR DIP; DIP-3517N; -. DR IntAct; O25930; 2. DR MINT; MINT-173287; -. DR STRING; 85962.HP1378; -. DR PaxDb; O25930; -. DR PRIDE; O25930; -. DR EnsemblBacteria; AAD08420; AAD08420; HP_1378. DR GeneID; 900305; -. DR KEGG; heo:C694_07115; -. DR KEGG; hpy:HP1378; -. DR PATRIC; 20594145; VBIHelPyl33062_1443. DR eggNOG; ENOG410901F; Bacteria. DR eggNOG; COG4105; LUCA. DR KO; K05807; -. DR OMA; PNRNQKL; -. DR OrthoDB; EOG6WMHZM; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0051205; P:protein insertion into membrane; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00922; OM_assembly_BamD; 1. DR InterPro; IPR017689; BamD. DR TIGRFAMs; TIGR03302; OM_YfiO; 1. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 3: Inferred from homology; KW Cell outer membrane; Complete proteome; Lipoprotein; Membrane; KW Palmitate; Reference proteome; Signal. FT SIGNAL 1 22 {ECO:0000255|HAMAP-Rule:MF_00922}. FT CHAIN 23 220 Outer membrane protein assembly factor FT BamD. FT /FTId=PRO_0000417618. FT LIPID 23 23 N-palmitoyl cysteine. {ECO:0000255|HAMAP- FT Rule:MF_00922}. FT LIPID 23 23 S-diacylglycerol cysteine. FT {ECO:0000255|HAMAP-Rule:MF_00922}. SQ SEQUENCE 220 AA; 26256 MW; A50744335E9E7DC6 CRC64; MRLKHFKTFL FITMAIIVIG TGCANKKKKK DEYNKPAIFW YQGILREILF ANLETADNYY SSLQSEHINS PLVPEAMLAL GQAHMKKKEY VLASFYFDEY IKRFGTKDNV DYLTFLKLQS HYYAFKNHSK DQEFISNSIV SLGEFIEKYP NSRYRPYVEY MQIKFILGQN ELNRAIANVY KKRHKPEGVK RYLERIDETL EKETKPKPSH MPWYVLIFDW // ID BCP_HELPY Reviewed; 152 AA. AC P55979; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Putative peroxiredoxin bcp; DE EC=1.11.1.15; DE AltName: Full=Bacterioferritin comigratory protein homolog; DE AltName: Full=Thioredoxin reductase; GN Name=bcp; OrderedLocusNames=HP_0136; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 2 R'-SH + ROOH = R'-S-S-R' + H(2)O + ROH. CC -!- SIMILARITY: Belongs to the AhpC/TSA family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 thioredoxin domain. {ECO:0000255|PROSITE- CC ProRule:PRU00691}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07205.1; -; Genomic_DNA. DR PIR; H64536; H64536. DR RefSeq; NP_206936.1; NC_000915.1. DR RefSeq; WP_000412947.1; NC_018939.1. DR ProteinModelPortal; P55979; -. DR DIP; DIP-3201N; -. DR IntAct; P55979; 21. DR MINT; MINT-162046; -. DR STRING; 85962.HP0136; -. DR PaxDb; P55979; -. DR PRIDE; P55979; -. DR EnsemblBacteria; AAD07205; AAD07205; HP_0136. DR GeneID; 900152; -. DR KEGG; heo:C694_00670; -. DR KEGG; hpy:HP0136; -. DR PATRIC; 20591489; VBIHelPyl33062_0144. DR eggNOG; ENOG4108YXY; Bacteria. DR eggNOG; COG1225; LUCA. DR KO; K03564; -. DR OMA; HHEIVLE; -. DR OrthoDB; EOG6ZH2P1; -. DR BioCyc; HPY:HP0136-MONOMER; -. DR BioCyc; RETL1328306-WGS:GSTH-2271-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004601; F:peroxidase activity; IEA:UniProtKB-KW. DR GO; GO:0051920; F:peroxiredoxin activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR024706; Peroxiredoxin_AhpC-typ. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR PIRSF; PIRSF000239; AHPC; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 3: Inferred from homology; KW Complete proteome; Oxidoreductase; Peroxidase; Redox-active center; KW Reference proteome. FT CHAIN 1 152 Putative peroxiredoxin bcp. FT /FTId=PRO_0000135138. FT DOMAIN 4 152 Thioredoxin. {ECO:0000255|PROSITE- FT ProRule:PRU00691}. FT ACT_SITE 46 46 {ECO:0000250}. SQ SEQUENCE 152 AA; 17116 MW; 40D71F05CC19D671 CRC64; MEKLEVGQLA PDFRLKNSDG VEISLKDLLH KKVVLYFYPK DNTPGCTLEA KDFSALFSEF EKKNAVVVGI SPDNAQSHQK FISQCSLNVI LLCDEDKKAA NLYKAYGKRM LYGKEHLGII RSTFIINTQG VLEKCFYNVK AKGHAQKVLE SL // ID BIOA_HELPY Reviewed; 436 AA. AC O25627; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000255|HAMAP-Rule:MF_00834}; DE EC=2.6.1.62 {ECO:0000255|HAMAP-Rule:MF_00834}; DE AltName: Full=7,8-diamino-pelargonic acid aminotransferase {ECO:0000255|HAMAP-Rule:MF_00834}; DE Short=DAPA AT {ECO:0000255|HAMAP-Rule:MF_00834}; DE Short=DAPA aminotransferase {ECO:0000255|HAMAP-Rule:MF_00834}; DE AltName: Full=7,8-diaminononanoate synthase {ECO:0000255|HAMAP-Rule:MF_00834}; DE Short=DANS {ECO:0000255|HAMAP-Rule:MF_00834}; DE AltName: Full=Diaminopelargonic acid synthase {ECO:0000255|HAMAP-Rule:MF_00834}; GN Name=bioA {ECO:0000255|HAMAP-Rule:MF_00834}; GN OrderedLocusNames=HP_0976; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the transfer of the alpha-amino group from S- CC adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid CC (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only CC animotransferase known to utilize SAM as an amino donor. CC {ECO:0000255|HAMAP-Rule:MF_00834}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + 8-amino-7- CC oxononanoate = S-adenosyl-4-methylthio-2-oxobutanoate + 7,8- CC diaminononanoate. {ECO:0000255|HAMAP-Rule:MF_00834}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00834}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis; 7,8- CC diaminononanoate from 8-amino-7-oxononanoate (SAM route): step CC 1/1. {ECO:0000255|HAMAP-Rule:MF_00834}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00834}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00834}. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. BioA subfamily. {ECO:0000255|HAMAP- CC Rule:MF_00834}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08022.1; -; Genomic_DNA. DR PIR; H64641; H64641. DR RefSeq; NP_207767.1; NC_000915.1. DR RefSeq; WP_001010809.1; NC_000915.1. DR ProteinModelPortal; O25627; -. DR DIP; DIP-3676N; -. DR IntAct; O25627; 1. DR MINT; MINT-186094; -. DR STRING; 85962.HP0976; -. DR PaxDb; O25627; -. DR PRIDE; O25627; -. DR EnsemblBacteria; AAD08022; AAD08022; HP_0976. DR GeneID; 899508; -. DR KEGG; heo:C694_05025; -. DR KEGG; hpy:HP0976; -. DR PATRIC; 20593267; VBIHelPyl33062_1015. DR eggNOG; ENOG4108JPX; Bacteria. DR eggNOG; COG0161; LUCA. DR KO; K00833; -. DR OMA; MAFEYCK; -. DR OrthoDB; EOG6QVRHN; -. DR BioCyc; HPY:HP0976-MONOMER; -. DR UniPathway; UPA00078; UER00160. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004015; F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR HAMAP; MF_00834; BioA; 1. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR005815; BioA. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR PIRSF; PIRSF000521; Transaminase_4ab_Lys_Orn; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00508; bioA; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Aminotransferase; Biotin biosynthesis; Complete proteome; Cytoplasm; KW Pyridoxal phosphate; Reference proteome; S-adenosyl-L-methionine; KW Transferase. FT CHAIN 1 436 Adenosylmethionine-8-amino-7-oxononanoate FT aminotransferase. FT /FTId=PRO_0000120370. FT REGION 114 115 Pyridoxal phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00834}. FT BINDING 56 56 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00834}. FT BINDING 148 148 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00834}. FT BINDING 245 245 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00834}. FT BINDING 274 274 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00834}. FT BINDING 309 309 Substrate; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00834}. FT BINDING 400 400 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00834}. FT SITE 19 19 Participates in the substrate recognition FT with KAPA and in a stacking interaction FT with the adenine ring of SAM. FT {ECO:0000255|HAMAP-Rule:MF_00834}. FT MOD_RES 274 274 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00834}. SQ SEQUENCE 436 AA; 49769 MW; D529E437BB482786 CRC64; MNFQENLAAL DLEYLWHPCS QMQEHQNFPI IPIKKAQGIY LYDFNDNAYM DLISSWWVNL FGHNNAYISQ QLKNQIDDLE HVLLASFSHK PIITLSQRLC QLTHMDKCFY ADNGSSCVEI ALKMSYHAHF LKNQTRRKKL FLSLSNSYHG ETLGALSVGD VKLYKDTYTP LLLKNLTTPV PKNDHEIENS LNALKRLLDK HSEEICAFIA EPLLQCAGNM HIYSARYLKQ AVLLCKQKNI HIIFDEIATG FGRTGSMFAY EQCEIKPDFL CLSKGISGGY LPLSALLTHN EIYNQFYAPY EENKAFLHSH SYTGNALACA CANATLDIFE KENVIEKNKA LSGFIFNTLQ NALKPLMEQQ VVSDLRHLGM VFAFEVFIQT KERLSLAVFK KTLKKGLLLR PLNNTIYLMP PYIITHEEVK KAVAGLVEIL DELRKG // ID CAGS_HELPY Reviewed; 196 AA. AC P97227; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 79. DE RecName: Full=CAG pathogenicity island protein 13; GN Name=cagS; Synonyms=cag13; OrderedLocusNames=HP_0534; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8962108; DOI=10.1073/pnas.93.25.14648; RA Censini S., Lange C., Xiang Z., Crabtree J., Ghiara P., Borodovsky M., RA Rappuoli R., Covacci A.; RT "cag, a pathogenicity island of Helicobacter pylori, encodes type I- RT specific and disease-associated virulence factors."; RL Proc. Natl. Acad. Sci. U.S.A. 93:14648-14653(1996). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=9593295; DOI=10.1046/j.1365-2958.1998.00770.x; RA Akopyants N.S., Clifton S.W., Kersulyte D., Crabtree J.E., RA Youree B.E., Reece C.A., Bukanov N.O., Drazek E.S., Roe B.A., RA Berg D.E.; RT "Analyses of the cag pathogenicity island of Helicobacter pylori."; RL Mol. Microbiol. 28:37-53(1998). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF282852; AAF80204.1; -; Genomic_DNA. DR EMBL; AC000108; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AE000511; AAD07600.1; -; Genomic_DNA. DR PIR; F64586; F64586. DR RefSeq; NP_207330.1; NC_000915.1. DR RefSeq; WP_000069596.1; NC_018939.1. DR PDB; 2G3V; X-ray; 2.30 A; A/B/C/D=1-196. DR PDBsum; 2G3V; -. DR ProteinModelPortal; P97227; -. DR SMR; P97227; 21-181. DR STRING; 85962.HP0534; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; P97227; -. DR PRIDE; P97227; -. DR EnsemblBacteria; AAD07600; AAD07600; HP_0534. DR GeneID; 899270; -. DR KEGG; heo:C694_02755; -. DR KEGG; hpy:HP0534; -. DR PATRIC; 20592341; VBIHelPyl33062_0559. DR KO; K12098; -. DR OMA; MSIREMD; -. DR OrthoDB; EOG6XM773; -. DR BioCyc; HPY:HP0534-MONOMER; -. DR EvolutionaryTrace; P97227; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032020; CagS. DR Pfam; PF16707; CagS; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome. FT CHAIN 1 196 CAG pathogenicity island protein 13. FT /FTId=PRO_0000089283. FT VARIANT 2 2 S -> G (in strain: NCTC 11638). FT VARIANT 14 14 D -> N (in strain: NCTC 11638). FT VARIANT 33 33 S -> N (in strain: NCTC 11638). FT VARIANT 192 192 K -> E (in strain: NCTC 11638). FT VARIANT 196 196 V -> VQNA (in strain: NCTC 11638). FT HELIX 25 27 {ECO:0000244|PDB:2G3V}. FT HELIX 34 56 {ECO:0000244|PDB:2G3V}. FT HELIX 58 68 {ECO:0000244|PDB:2G3V}. FT HELIX 72 78 {ECO:0000244|PDB:2G3V}. FT HELIX 81 104 {ECO:0000244|PDB:2G3V}. FT HELIX 112 120 {ECO:0000244|PDB:2G3V}. FT HELIX 122 124 {ECO:0000244|PDB:2G3V}. FT HELIX 127 132 {ECO:0000244|PDB:2G3V}. FT HELIX 135 148 {ECO:0000244|PDB:2G3V}. FT TURN 149 152 {ECO:0000244|PDB:2G3V}. FT HELIX 159 167 {ECO:0000244|PDB:2G3V}. FT HELIX 171 179 {ECO:0000244|PDB:2G3V}. SQ SEQUENCE 196 AA; 23379 MW; 6048A03CF2227E08 CRC64; MSNNMRKLFS MIADSKDKKE KLIESLQENE LLSTDEKKKI IDQIKTMHDF FKQMHTNKGA LDKVLRNYMK DYRAVIKSIG VDKFKKVYRL LESETMELLH AIAENPNFLF SKFDRSILGI FLPFFSKPIM FKMSIREMDS QIELYGTKLP LLKLFVMTDE EMNFYANLKT IEQYNDYVRD LLMKFDLEKY MKEKGV // ID BIOF_HELPY Reviewed; 373 AA. AC O25320; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=8-amino-7-oxononanoate synthase; DE Short=AONS; DE EC=2.3.1.47; DE AltName: Full=7-keto-8-amino-pelargonic acid synthase; DE Short=7-KAP synthase; DE Short=KAPA synthase; DE AltName: Full=8-amino-7-ketopelargonate synthase; DE AltName: Full=Alpha-oxoamine synthase; GN OrderedLocusNames=HP_0598; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the decarboxylative condensation of pimeloyl- CC [acyl-carrier protein] and L-alanine to produce 8-amino-7- CC oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Pimeloyl-[acyl-carrier protein] + L-alanine = CC 8-amino-7-oxononanoate + CO(2) + holo-[acyl-carrier protein]. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II pyridoxal-phosphate-dependent CC aminotransferase family. BioF subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07661.1; -; Genomic_DNA. DR PIR; F64594; F64594. DR RefSeq; NP_207393.1; NC_000915.1. DR RefSeq; WP_000491853.1; NC_018939.1. DR ProteinModelPortal; O25320; -. DR STRING; 85962.HP0598; -. DR PaxDb; O25320; -. DR PRIDE; O25320; -. DR DNASU; 899287; -. DR EnsemblBacteria; AAD07661; AAD07661; HP_0598. DR GeneID; 899287; -. DR KEGG; heo:C694_03090; -. DR KEGG; hpy:HP0598; -. DR PATRIC; 20592475; VBIHelPyl33062_0626. DR eggNOG; ENOG4107EEK; Bacteria. DR eggNOG; COG0156; LUCA. DR KO; K00652; -. DR OMA; RDGARKH; -. DR OrthoDB; EOG6Q8HZD; -. DR UniPathway; UPA00078; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008710; F:8-amino-7-oxononanoate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.640.10; -; 1. DR InterPro; IPR001917; Aminotrans_II_pyridoxalP_BS. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00599; AA_TRANSFER_CLASS_2; 1. PE 3: Inferred from homology; KW Acyltransferase; Biotin biosynthesis; Complete proteome; KW Pyridoxal phosphate; Reference proteome; Transferase. FT CHAIN 1 373 8-amino-7-oxononanoate synthase. FT /FTId=PRO_0000163814. FT REGION 93 94 Pyridoxal phosphate binding. FT {ECO:0000250}. FT REGION 190 193 Pyridoxal phosphate binding. FT {ECO:0000250}. FT REGION 222 225 Pyridoxal phosphate binding. FT {ECO:0000250}. FT BINDING 16 16 Substrate. {ECO:0000250}. FT BINDING 118 118 Substrate. {ECO:0000250}. FT BINDING 165 165 Pyridoxal phosphate. {ECO:0000250}. FT BINDING 334 334 Substrate. {ECO:0000250}. FT MOD_RES 225 225 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 373 AA; 41939 MW; 8CD5B72EEC704B0C CRC64; MFSKSLEALH HAKRYRKREL FDPLLKDYAS NDYLGLSVKK DLLQNAFNKL QSFVSHSPKA SMLVNGYHPL HAELEERLAN LLGFESALLV GSGFLGNLAL IDTLLVKNAL LFMDAHYHAS GIFSTKIKPN QVIFFSHNDI KDLKQKLFNA PKNKIKFIAI EGVYSMDASV APYDFYAIIQ EIPNAFLIVD EAHSFGTIGE NLLGFLEYYR IKEKDKIIKL STFSKALASY GACILAPLQT IEFLTNRAKS VIYTTALSLL DTALTLAHLE YFIVQKQELK NELSKHQQII FETLGIRTLA GFFTLEFESN PALLNAHHFL KEKGFLVGAI RPPTVSKPLL RVSLSLKNSL EDTKELANTL LNYSKIQSSF KSG // ID CAGE_HELPY Reviewed; 983 AA. AC Q48252; P94836; Q9JMX3; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 86. DE RecName: Full=CAG pathogenicity island protein 23; DE AltName: Full=Protein PicB; GN Name=cagE; Synonyms=cag23, picB; OrderedLocusNames=HP_0544; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 53726 / 84-183; RX PubMed=8825091; DOI=10.1111/j.1365-2958.1995.18050867.x; RA Tummuru M.K.R., Sharma S.A., Blaser M.J.; RT "Helicobacter pylori picB, a homologue of the Bordetella pertussis RT toxin secretion protein, is required for induction of IL-8 in gastric RT epithelial cells."; RL Mol. Microbiol. 18:867-876(1995). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8962108; DOI=10.1073/pnas.93.25.14648; RA Censini S., Lange C., Xiang Z., Crabtree J., Ghiara P., Borodovsky M., RA Rappuoli R., Covacci A.; RT "cag, a pathogenicity island of Helicobacter pylori, encodes type I- RT specific and disease-associated virulence factors."; RL Proc. Natl. Acad. Sci. U.S.A. 93:14648-14653(1996). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in DNA transfer. Required for induction of IL-8 CC in gastric epithelial cells. CC -!- SIMILARITY: To A.tumefaciens virB4. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF80209.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U28133; AAB63389.1; -; Genomic_DNA. DR EMBL; AF282853; AAF80209.1; ALT_INIT; Genomic_DNA. DR EMBL; AE000511; AAD07610.1; -; Genomic_DNA. DR PIR; H64587; H64587. DR RefSeq; NP_207340.1; NC_000915.1. DR RefSeq; WP_000495985.1; NC_018939.1. DR ProteinModelPortal; Q48252; -. DR DIP; DIP-3373N; -. DR IntAct; Q48252; 1. DR MINT; MINT-187650; -. DR STRING; 85962.HP0544; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; Q48252; -. DR PRIDE; Q48252; -. DR EnsemblBacteria; AAD07610; AAD07610; HP_0544. DR GeneID; 900243; -. DR KEGG; heo:C694_02805; -. DR KEGG; hpy:HP0544; -. DR PATRIC; 20592359; VBIHelPyl33062_0568. DR eggNOG; ENOG4105EJX; Bacteria. DR eggNOG; COG3451; LUCA. DR KO; K12108; -. DR OMA; ECEDEHH; -. DR OrthoDB; EOG6HMX9P; -. DR BioCyc; HPY:HP0544-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 3. DR InterPro; IPR004346; CagE_TrbE_VirB. DR InterPro; IPR018145; CagE_TrbE_VirB_cntrl_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF03135; CagE_TrbE_VirB; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00929; VirB4_CagE; 1. PE 4: Predicted; KW ATP-binding; Complete proteome; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 983 CAG pathogenicity island protein 23. FT /FTId=PRO_0000089281. FT NP_BIND 597 604 ATP. {ECO:0000255}. FT CONFLICT 15 15 V -> I (in Ref. 2; AAF80209). FT {ECO:0000305}. FT CONFLICT 26 26 K -> Q (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 33 33 A -> T (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 39 39 V -> I (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 228 228 V -> I (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 242 242 S -> G (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 268 268 Y -> F (in Ref. 2; AAF80209). FT {ECO:0000305}. FT CONFLICT 325 325 I -> T (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 335 335 V -> I (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 357 357 C -> S (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 556 556 E -> D (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 618 631 VHNFPANVSKDKQK -> AIIFLLMSAKTNKS (in Ref. FT 1). {ECO:0000305}. FT CONFLICT 618 619 VH -> AY (in Ref. 2; AAF80209). FT {ECO:0000305}. FT CONFLICT 678 678 N -> D (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 712 712 I -> V (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 733 733 D -> N (in Ref. 2; AAF80209). FT {ECO:0000305}. FT CONFLICT 837 837 G -> S (in Ref. 1; AAB63389). FT {ECO:0000305}. FT CONFLICT 855 983 RNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNL FT SDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNL FT RGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMY FT QQIKEY -> ETLLLDLQPKASLIFWLALLLIRLENNALQR FT FF (in Ref. 1; AAB63389). {ECO:0000305}. FT CONFLICT 981 981 K -> E (in Ref. 2; AAF80209). FT {ECO:0000305}. SQ SEQUENCE 983 AA; 112021 MW; 844D8A653DFFE8E5 CRC64; MFVASKQADE QKKLVIEQEV QKRQFKKIEE LKADMQKGVN PFFKVLFDGG NRLFGFPETF IYSSIFILFV TIVLSVILFQ AYEPVLIVAI VIVLVALGFK KDYRLYQRME RAMKFKKPFL FKGVKNKAFM SIFSMKPSKE MANDIHLNPN REDRLVSAAN SYLANNYECF LDDGVILTNN YSLLGTIKLG GIDFLTTSKK DLIELHASIY SVFRNFVTPE FKFYFHTVKK KIVIDETNRD YSLIFSNDFM RAYNEKQKRE SFYDISFYLT IEQDLLDTLN EPVMNKKHFA DNNFEEFQRI IRAKLENFKD RIELIEELLS KYHPIRLKEY TKDGVIYSKQ CEFYNFLVGM NEAPFICNRK DLYLKEKMHG GVKEVYFANK HGKILNDDLS EKYFSAIEIS EYAPKSQSDL FDKINALDSE FIFMHAYSPK NSQVLKDKLA FTSRRIIISG GSKEQGMTLG CLSELVGNGD ITLGSYGNSL VLFADSFEKM KQSVKECVSS LNAKGFLANA ATFSMENYFF AKHCSFITLP FIFDVTSNNF ADFIAMRAMS FDGNQENNAW GNSVMTLKSE INSPFYLNFH MPTDFGSASA GHTLILGSTG SGKTVFMSMT LNAMGQFVHN FPANVSKDKQ KLTMVYMDKD YGAYGNIVAM GGEYVKIELG TDTGLNPFAW AACVQKTNAT MEQKQTAISV VKELVKNLAT KSDEKDENGN SISFSLADSN TLAAAVTNLI TGDMNLDYPI TQLINAFGKD HNDPNGLVAR LAPFCKSTNG EFQWLFDNKA TDRLDFSKTI IGVDGSSFLD NNDVSPFICF YLFARIQEAM DGRRFVLDID EAWKYLGDPK VAYFVRDMLK TARKRNAIVR LATQSITDLL ACPIADTIRE QCPTKIFLRN DGGNLSDYQR LANVTEKEFE IITKGLDRKI LYKQDGSPSV IASFNLRGIP KEYLKILSTD TVFVKEIDKI IQNHSIIDKY QALRQMYQQI KEY // ID CARA_HELPY Reviewed; 375 AA. AC O25835; DT 11-JUL-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=Carbamoyl-phosphate synthase small chain {ECO:0000255|HAMAP-Rule:MF_01209}; DE EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01209}; DE AltName: Full=Carbamoyl-phosphate synthetase glutamine chain {ECO:0000255|HAMAP-Rule:MF_01209}; GN Name=carA {ECO:0000255|HAMAP-Rule:MF_01209}; GN OrderedLocusNames=HP_1237; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 2 ATP + L-glutamine + HCO(3)(-) + H(2)O = 2 CC ADP + phosphate + L-glutamate + carbamoyl phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01209}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; CC carbamoyl phosphate from bicarbonate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01209}. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 1/3. CC {ECO:0000255|HAMAP-Rule:MF_01209}. CC -!- SUBUNIT: Composed of two chains; the small (or glutamine) chain CC promotes the hydrolysis of glutamine to ammonia, which is used by CC the large (or ammonia) chain to synthesize carbamoyl phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01209}. CC -!- SIMILARITY: Belongs to the CarA family. {ECO:0000255|HAMAP- CC Rule:MF_01209}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000255|HAMAP-Rule:MF_01209}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08282.1; -; Genomic_DNA. DR PIR; E64674; E64674. DR RefSeq; NP_208029.1; NC_000915.1. DR RefSeq; WP_000254171.1; NC_018939.1. DR ProteinModelPortal; O25835; -. DR DIP; DIP-3716N; -. DR IntAct; O25835; 2. DR MINT; MINT-179287; -. DR STRING; 85962.HP1237; -. DR PaxDb; O25835; -. DR PRIDE; O25835; -. DR EnsemblBacteria; AAD08282; AAD08282; HP_1237. DR GeneID; 899987; -. DR KEGG; heo:C694_06385; -. DR KEGG; hpy:HP1237; -. DR PATRIC; 20593845; VBIHelPyl33062_1293. DR eggNOG; ENOG4105C1M; Bacteria. DR eggNOG; COG0505; LUCA. DR KO; K01956; -. DR OMA; VDTRYIT; -. DR OrthoDB; EOG61ZTH6; -. DR UniPathway; UPA00068; UER00171. DR UniPathway; UPA00070; UER00115. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004088; F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.880; -; 1. DR Gene3D; 3.50.30.20; -; 1. DR HAMAP; MF_01209; CPSase_S_chain; 1. DR InterPro; IPR006274; CarbamoylP_synth_ssu. DR InterPro; IPR002474; CarbamoylP_synth_ssu_N. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR Pfam; PF00988; CPSase_sm_chain; 1. DR Pfam; PF00117; GATase; 1. DR SMART; SM01097; CPSase_sm_chain; 1. DR SUPFAM; SSF52021; SSF52021; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR01368; CPSaseIIsmall; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Arginine biosynthesis; ATP-binding; KW Complete proteome; Glutamine amidotransferase; Ligase; KW Nucleotide-binding; Pyrimidine biosynthesis; Reference proteome. FT CHAIN 1 375 Carbamoyl-phosphate synthase small chain. FT /FTId=PRO_0000112282. FT DOMAIN 188 375 Glutamine amidotransferase type-1. FT {ECO:0000255|HAMAP-Rule:MF_01209}. FT REGION 1 184 CPSase. FT ACT_SITE 268 268 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_01209}. FT ACT_SITE 351 351 {ECO:0000255|HAMAP-Rule:MF_01209}. FT ACT_SITE 353 353 {ECO:0000255|HAMAP-Rule:MF_01209}. SQ SEQUENCE 375 AA; 41636 MW; D7146CA079AB7C1F CRC64; MVSLYLENGL FLQAQSFGAS GTQAGELVFN TSMSGYQEVI SDPSYKGQFV VFSMPEIGVV GANSKDDESF FSCAGVLARH YNEFFSNSRA DFSLSAYLKE RGVLGVCGVD TRSLIKTLRH HGCLMMVAST IEHDKNKLEE ILKNAPKISH SPLVSSVSTP KITTHQRATF DFKTLDYKPF DEKTSHKIIA VLDFGAKGNI LNELQNVGLK ALIYPHHTKA SELIKAYEKK EISGIFLSNG PGDPLSLQQE IGEIKQLINA KIPMLGICLG HQLLSIAQGY PTYKLKFGHH GSNHPVKNLK TNAVEITAQN HNYCVPEDIE EIAIITHRNL FDNTIEGVRY KNAPIISVQH HPESSPGPKE SHYIFKEFVE LLKDF // ID CAGA_HELPY Reviewed; 1186 AA. AC P55980; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Cytotoxicity-associated immunodominant antigen; DE AltName: Full=120 kDa protein; DE AltName: Full=CAG pathogenicity island protein 26; GN Name=cagA; Synonyms=cag26, cai; OrderedLocusNames=HP_0547; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: May be necessary for the transcription, folding, export, CC or function of the cytotoxin. CC -!- INTERACTION: CC P94842:ybgC; NbExp=2; IntAct=EBI-528104, EBI-528090; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07614.1; -; Genomic_DNA. DR PIR; C64588; C64588. DR RefSeq; NP_207343.1; NC_000915.1. DR RefSeq; WP_000180747.1; NC_018939.1. DR PDB; 3IEC; X-ray; 2.20 A; E/F/G/H=885-1005. DR PDB; 4DVY; X-ray; 3.30 A; P=1-876. DR PDB; 4DVZ; X-ray; 3.19 A; A=261-829. DR PDB; 4G0H; X-ray; 3.60 A; A=1-884. DR PDB; 4IRV; X-ray; 2.04 A; A/B/C/D=19-235. DR PDBsum; 3IEC; -. DR PDBsum; 4DVY; -. DR PDBsum; 4DVZ; -. DR PDBsum; 4G0H; -. DR PDBsum; 4IRV; -. DR ProteinModelPortal; P55980; -. DR DIP; DIP-3093N; -. DR IntAct; P55980; 16. DR MINT; MINT-160479; -. DR STRING; 85962.HP0547; -. DR PaxDb; P55980; -. DR PRIDE; P55980; -. DR EnsemblBacteria; AAD07614; AAD07614; HP_0547. DR GeneID; 898777; -. DR KEGG; heo:C694_02825; -. DR KEGG; hpy:HP0547; -. DR PATRIC; 20592367; VBIHelPyl33062_0572. DR KO; K15842; -. DR OMA; PNYKFNQ; -. DR OrthoDB; EOG689HMM; -. DR BioCyc; HPY:HP0547-MONOMER; -. DR EvolutionaryTrace; P55980; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0019534; F:toxin transporter activity; IEA:InterPro. DR InterPro; IPR005169; CagA. DR InterPro; IPR004355; IVSec_CagA. DR Pfam; PF03507; CagA; 1. DR PRINTS; PR01553; TYPE4SSCAGA. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome. FT CHAIN 1 1186 Cytotoxicity-associated immunodominant FT antigen. FT /FTId=PRO_0000089279. FT COMPBIAS 247 250 Poly-Thr. FT COMPBIAS 883 889 Poly-Asn. FT HELIX 25 44 {ECO:0000244|PDB:4IRV}. FT HELIX 46 48 {ECO:0000244|PDB:4IRV}. FT HELIX 49 79 {ECO:0000244|PDB:4IRV}. FT HELIX 81 83 {ECO:0000244|PDB:4IRV}. FT HELIX 84 101 {ECO:0000244|PDB:4IRV}. FT HELIX 107 117 {ECO:0000244|PDB:4IRV}. FT HELIX 119 130 {ECO:0000244|PDB:4IRV}. FT HELIX 135 137 {ECO:0000244|PDB:4IRV}. FT HELIX 140 149 {ECO:0000244|PDB:4IRV}. FT STRAND 151 153 {ECO:0000244|PDB:4IRV}. FT HELIX 158 182 {ECO:0000244|PDB:4IRV}. FT HELIX 185 190 {ECO:0000244|PDB:4IRV}. FT HELIX 192 201 {ECO:0000244|PDB:4IRV}. FT HELIX 212 217 {ECO:0000244|PDB:4IRV}. FT STRAND 310 313 {ECO:0000244|PDB:4DVZ}. FT STRAND 320 324 {ECO:0000244|PDB:4DVZ}. FT STRAND 336 343 {ECO:0000244|PDB:4DVZ}. FT STRAND 350 358 {ECO:0000244|PDB:4DVZ}. FT STRAND 363 367 {ECO:0000244|PDB:4DVZ}. FT HELIX 376 379 {ECO:0000244|PDB:4DVZ}. FT STRAND 381 383 {ECO:0000244|PDB:4DVZ}. FT TURN 385 387 {ECO:0000244|PDB:4DVZ}. FT STRAND 390 392 {ECO:0000244|PDB:4DVZ}. FT HELIX 395 410 {ECO:0000244|PDB:4DVZ}. FT TURN 411 413 {ECO:0000244|PDB:4DVZ}. FT HELIX 420 425 {ECO:0000244|PDB:4DVZ}. FT HELIX 427 435 {ECO:0000244|PDB:4DVZ}. FT HELIX 437 446 {ECO:0000244|PDB:4DVZ}. FT STRAND 447 452 {ECO:0000244|PDB:4DVZ}. FT STRAND 459 469 {ECO:0000244|PDB:4DVZ}. FT STRAND 471 477 {ECO:0000244|PDB:4DVZ}. FT STRAND 492 496 {ECO:0000244|PDB:4DVZ}. FT HELIX 498 501 {ECO:0000244|PDB:4DVZ}. FT STRAND 502 508 {ECO:0000244|PDB:4DVZ}. FT STRAND 538 543 {ECO:0000244|PDB:4DVZ}. FT TURN 550 554 {ECO:0000244|PDB:4DVZ}. FT HELIX 556 567 {ECO:0000244|PDB:4DVZ}. FT HELIX 572 606 {ECO:0000244|PDB:4DVZ}. FT HELIX 610 638 {ECO:0000244|PDB:4DVZ}. FT HELIX 651 710 {ECO:0000244|PDB:4DVZ}. FT HELIX 720 734 {ECO:0000244|PDB:4DVZ}. FT HELIX 738 755 {ECO:0000244|PDB:4DVZ}. FT HELIX 763 802 {ECO:0000244|PDB:4DVZ}. FT HELIX 806 826 {ECO:0000244|PDB:4DVZ}. SQ SEQUENCE 1186 AA; 132387 MW; B05C3F2CCC4444F4 CRC64; MTNETIDQTR TPDQTQSQTA FDPQQFINNL QVAFIKVDNV VASFDPDQKP IVDKNDRDNR QAFDGISQLR EEYSNKAIKN PTKKNQYFSD FIDKSNDLIN KDNLIDVESS TKSFQKFGDQ RYQIFTSWVS HQKDPSKINT RSIRNFMENI IQPPIPDDKE KAEFLKSAKQ SFAGIIIGNQ IRTDQKFMGV FDESLKERQE AEKNGGPTGG DWLDIFLSFI FNKKQSSDVK EAINQEPVPH VQPDIATTTT DIQGLPPEAR DLLDERGNFS KFTLGDMEML DVEGVADIDP NYKFNQLLIH NNALSSVLMG SHNGIEPEKV SLLYAGNGGF GDKHDWNATV GYKDQQGNNV ATLINVHMKN GSGLVIAGGE KGINNPSFYL YKEDQLTGSQ RALSQEEIRN KVDFMEFLAQ NNTKLDNLSE KEKEKFQNEI EDFQKDSKAY LDALGNDRIA FVSKKDTKHS ALITEFNNGD LSYTLKDYGK KADKALDREK NVTLQGSLKH DGVMFVDYSN FKYTNASKNP NKGVGATNGV SHLEAGFNKV AVFNLPDLNN LAITSFVRRN LENKLTAKGL SLQEANKLIK DFLSSNKELA GKALNFNKAV AEAKSTGNYD EVKKAQKDLE KSLRKREHLE KEVEKKLESK SGNKNKMEAK AQANSQKDEI FALINKEANR DARAIAYTQN LKGIKRELSD KLEKISKDLK DFSKSFDEFK NGKNKDFSKA EETLKALKGS VKDLGINPEW ISKVENLNAA LNEFKNGKNK DFSKVTQAKS DLENSVKDVI INQKVTDKVD NLNQAVSVAK AMGDFSRVEQ VLADLKNFSK EQLAQQAQKN EDFNTGKNSE LYQSVKNSVN KTLVGNGLSG IEATALAKNF SDIKKELNEK FKNFNNNNNG LKNSTEPIYA KVNKKKTGQV ASPEEPIYTQ VAKKVNAKID RLNQIASGLG GVGQAAGFPL KRHDKVDDLS KVGLSASPEP IYATIDDLGG PFPLKRHDKV DDLSKVGRSR NQELAQKIDN LNQAVSEAKA GFFGNLEQTI DKLKDSTKKN VMNLYVESAK KVPASLSAKL DNYAINSHTR INSNIQNGAI NEKATGMLTQ KNPEWLKLVN DKIVAHNVGS VSLSEYDKIG FNQKNMKDYS DSFKFSTKLN NAVKDIKSGF THFLANAFST GYYCLARENA EHGIKNVNTK GGFQKS // ID CARB_HELPY Reviewed; 1085 AA. AC O25577; DT 02-AUG-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 112. DE RecName: Full=Carbamoyl-phosphate synthase large chain {ECO:0000255|HAMAP-Rule:MF_01210}; DE EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01210}; DE AltName: Full=Carbamoyl-phosphate synthetase ammonia chain {ECO:0000255|HAMAP-Rule:MF_01210}; GN Name=carB {ECO:0000255|HAMAP-Rule:MF_01210}; GN OrderedLocusNames=HP_0919; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 2 ATP + L-glutamine + HCO(3)(-) + H(2)O = 2 CC ADP + phosphate + L-glutamate + carbamoyl phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01210}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 4 Mg(2+) or Mn(2+) ions per subunit. {ECO:0000250}; CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; CC carbamoyl phosphate from bicarbonate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01210}. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 1/3. CC {ECO:0000255|HAMAP-Rule:MF_01210}. CC -!- SUBUNIT: Composed of two chains; the small (or glutamine) chain CC promotes the hydrolysis of glutamine to ammonia, which is used by CC the large (or ammonia) chain to synthesize carbamoyl phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01210}. CC -!- SIMILARITY: Belongs to the CarB family. {ECO:0000255|HAMAP- CC Rule:MF_01210}. CC -!- SIMILARITY: Contains 2 ATP-grasp domains. {ECO:0000255|HAMAP- CC Rule:MF_01210}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07963.1; -; Genomic_DNA. DR PIR; G64634; G64634. DR RefSeq; NP_207711.1; NC_000915.1. DR RefSeq; WP_001126584.1; NC_018939.1. DR ProteinModelPortal; O25577; -. DR DIP; DIP-3181N; -. DR IntAct; O25577; 6. DR MINT; MINT-187278; -. DR STRING; 85962.HP0919; -. DR PaxDb; O25577; -. DR PRIDE; O25577; -. DR EnsemblBacteria; AAD07963; AAD07963; HP_0919. DR GeneID; 899448; -. DR KEGG; heo:C694_04730; -. DR KEGG; hpy:HP0919; -. DR PATRIC; 20593139; VBIHelPyl33062_0955. DR eggNOG; ENOG4105CU6; Bacteria. DR eggNOG; COG0458; LUCA. DR KO; K01955; -. DR OMA; AVFPFNK; -. DR OrthoDB; EOG6J1DC6; -. DR UniPathway; UPA00068; UER00171. DR UniPathway; UPA00070; UER00115. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004088; F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1030.10; -; 1. DR Gene3D; 3.30.1490.20; -; 2. DR Gene3D; 3.30.470.20; -; 2. DR Gene3D; 3.40.50.1380; -; 1. DR Gene3D; 3.40.50.20; -; 2. DR HAMAP; MF_01210_B; CPSase_L_chain_B; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR006275; CarbamoylP_synth_lsu. DR InterPro; IPR005480; CarbamoylP_synth_lsu_oligo. DR InterPro; IPR005479; CbamoylP_synth_lsu-like_ATP-bd. DR InterPro; IPR005483; CbamoylP_synth_lsu_CPSase_dom. DR InterPro; IPR011607; MGS-like_dom. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF02786; CPSase_L_D2; 2. DR Pfam; PF02787; CPSase_L_D3; 1. DR Pfam; PF02142; MGS; 1. DR PRINTS; PR00098; CPSASE. DR SMART; SM01096; CPSase_L_D3; 1. DR SMART; SM00851; MGS; 1. DR SUPFAM; SSF48108; SSF48108; 1. DR SUPFAM; SSF52335; SSF52335; 1. DR SUPFAM; SSF52440; SSF52440; 2. DR TIGRFAMs; TIGR01369; CPSaseII_lrg; 1. DR PROSITE; PS50975; ATP_GRASP; 2. DR PROSITE; PS00867; CPSASE_2; 2. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Arginine biosynthesis; ATP-binding; KW Complete proteome; Ligase; Magnesium; Manganese; Metal-binding; KW Nucleotide-binding; Pyrimidine biosynthesis; Reference proteome; KW Repeat. FT CHAIN 1 1085 Carbamoyl-phosphate synthase large chain. FT /FTId=PRO_0000145010. FT DOMAIN 131 326 ATP-grasp 1. {ECO:0000255|HAMAP- FT Rule:MF_01210}. FT DOMAIN 678 871 ATP-grasp 2. {ECO:0000255|HAMAP- FT Rule:MF_01210}. FT NP_BIND 157 214 ATP. {ECO:0000255|HAMAP-Rule:MF_01210}. FT NP_BIND 704 764 ATP. {ECO:0000255|HAMAP-Rule:MF_01210}. FT REGION 1 399 Carboxyphosphate synthetic domain. FT REGION 400 552 Oligomerization domain. FT REGION 553 951 Carbamoyl phosphate synthetic domain. FT REGION 952 1085 Allosteric domain. FT METAL 283 283 Magnesium or manganese 1. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 297 297 Magnesium or manganese 1. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 297 297 Magnesium or manganese 2. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 299 299 Magnesium or manganese 2. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 830 830 Magnesium or manganese 3. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 842 842 Magnesium or manganese 3. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 842 842 Magnesium or manganese 4. FT {ECO:0000255|HAMAP-Rule:MF_01210}. FT METAL 844 844 Magnesium or manganese 4. FT {ECO:0000255|HAMAP-Rule:MF_01210}. SQ SEQUENCE 1085 AA; 120074 MW; 696E124A50DB34C1 CRC64; MPKRTDISNI LLIGSGPIVI GQACEFDYSG TQSCKTLKSL GYRVILINSN PATVMTDPEF SHQTYIQPIT PENIATIIEK EKIDAILPTM GGQTALNAVM QMHQKGMLEG VELLGAKIEA IKKGEDRQAF KEAMLKIGMD LPKGRYAYTE LEALEAINEI GFPAIIRASF TLAGGGSGVA YNIEEFQELA KNALDASPIN EILIEESLLG WKEYEMEVIR DSKDNCIIVC CIENIDPMGV HTGDSITIAP SLTLTDKEYQ RMRDASFAIL REIGVDTGGS NVQFAIHPET LRMVVIEMNP RVSRSSALAS KATGFPIAKV ATMLAVGFSL DEIQNDITNT PASFEPSLDY IVVKIPRFAF EKFAGVSSTL GTSMKSIGEV MAIGGNFLEA LQKALCSLEN NWLGFESLSK DLEAIKKEIR RPNPKRLLYI ADAFRLGVCV DEVFELCQID RWFLSQIQKL VEVEESINSS VLTDAKKLRG LKNLGFSDAR IAAKIKENEN LEVSPFEVEL ARSNLQIVPN FEEVDTCAAE FLSLTPYLYS TYAPNPLPPI ENKQEKKEKK ILIIGSGPNR IGQGIEFDYC CVHASLALKD LNIKSVMFNC NPETVSTDYD TSDTLYFEPI HFECVKSIIQ RERVDGIIVH FGGQTPLKLA KDLAKMQAPI IGTPFKVIDI AEDREKFSLF LKELDIKQPK NGMAKSVDEA YSIANVIGFP IIVRPSYVLG GQHMQILENI EELRHYLESV THALEISPKN PLLIDKFLEK AVELDVDAIC DKKEVYIAGI LQHIEEAGIH SGDSACFIPS TLSPEILDEI ERVSAKIALH LGVVGLLNIQ FAVHQNSLYL IEVNPRASRT VPFLSKALGV PLAKVATRVM VLEDLKEALK FYDKKNIVGY SKGVYKPKMP HFVALKEAVF PFNKLYGSDL ILGPEMKSTG EVMGIARSLG LAFFKAQTAC FNPIKNKGLI FVSIKDKDKE EACVLMKRLV QLGFELCATE GTHKALEKAG VKSLKVLKIS EGRPNIMDLM MNGEISMAIN TSDHKSQDDA KLIRASVLKN HVSYFTTLST IEVLLLALEE SSKEDELLAL QDYLK // ID CAGT_HELPY Reviewed; 280 AA. AC P97245; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 89. DE RecName: Full=CAG pathogenicity island protein 12; DE Flags: Precursor; GN Name=cagT; Synonyms=cag12; OrderedLocusNames=HP_0532; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8962108; DOI=10.1073/pnas.93.25.14648; RA Censini S., Lange C., Xiang Z., Crabtree J., Ghiara P., Borodovsky M., RA Rappuoli R., Covacci A.; RT "cag, a pathogenicity island of Helicobacter pylori, encodes type I- RT specific and disease-associated virulence factors."; RL Proc. Natl. Acad. Sci. U.S.A. 93:14648-14653(1996). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=9593295; DOI=10.1046/j.1365-2958.1998.00770.x; RA Akopyants N.S., Clifton S.W., Kersulyte D., Crabtree J.E., RA Youree B.E., Reece C.A., Bukanov N.O., Drazek E.S., Roe B.A., RA Berg D.E.; RT "Analyses of the cag pathogenicity island of Helicobacter pylori."; RL Mol. Microbiol. 28:37-53(1998). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25258:HP_0522; NbExp=3; IntAct=EBI-2585196, EBI-2506871; CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF282852; AAF80203.1; -; Genomic_DNA. DR EMBL; AC000108; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AE000511; AAD07599.1; -; Genomic_DNA. DR PIR; D64586; D64586. DR RefSeq; NP_207328.1; NC_000915.1. DR RefSeq; WP_000776464.1; NC_000915.1. DR ProteinModelPortal; P97245; -. DR DIP; DIP-3589N; -. DR IntAct; P97245; 2. DR MINT; MINT-181727; -. DR STRING; 85962.HP0532; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; P97245; -. DR PRIDE; P97245; -. DR EnsemblBacteria; AAD07599; AAD07599; HP_0532. DR GeneID; 898927; -. DR KEGG; hpy:HP0532; -. DR PATRIC; 20592339; VBIHelPyl33062_0558. DR KO; K12097; -. DR OMA; MKMRASV; -. DR OrthoDB; EOG6677P5; -. DR BioCyc; HPY:HP0532-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0019867; C:outer membrane; IDA:CACAO. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0009306; P:protein secretion; IMP:CACAO. DR InterPro; IPR025264; Cag12. DR Pfam; PF13117; Cag12; 1. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 1: Evidence at protein level; KW Cell membrane; Complete proteome; Lipoprotein; Membrane; Palmitate; KW Reference proteome; Signal. FT SIGNAL 1 20 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 21 280 CAG pathogenicity island protein 12. FT /FTId=PRO_0000020841. FT LIPID 21 21 N-palmitoyl cysteine. FT {ECO:0000255|PROSITE-ProRule:PRU00303}. FT LIPID 21 21 S-diacylglycerol cysteine. FT {ECO:0000255|PROSITE-ProRule:PRU00303}. FT VARIANT 3 3 L -> V (in strain: NCTC 11638). FT VARIANT 9 9 I -> T (in strain: NCTC 11638). FT VARIANT 144 144 S -> N (in strain: NCTC 11638). SQ SEQUENCE 280 AA; 32374 MW; C05AD6F8626C8464 CRC64; MKLRASVLIG ATILCLILSA CSNYAKKVVK QKNHVYTPVY NELIEKYSEI PLNDKLKDTP FMVQVKLPNY KDYLLDNKQV VLTFKLVHHS KKITLIGDAN KILQYKNYFQ ANGARSDIDF YLQPTLNQKG VVMIASNYND NPNSKEKPQT FDVLQGSQPM LGANTKNLHG YDVSGANNKQ VINEVAREKA QLEKINQYYK TLLQDKEQEY TTRKNNQREI LETLSNRAGY QMRQNVISSE IFKNGNLNMQ AKEEEVREKL QEERENEYLR NQIRSLLSGK // ID CCOP_HELPY Reviewed; 286 AA. AC O24958; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 96. DE RecName: Full=Cbb3-type cytochrome c oxidase subunit CcoP {ECO:0000250|UniProtKB:D5ARP7}; DE Short=Cbb3-Cox subunit CcoP {ECO:0000250|UniProtKB:D5ARP7}; DE AltName: Full=C-type cytochrome CcoP {ECO:0000250|UniProtKB:Q52689}; DE Short=Cyt c(P) {ECO:0000250|UniProtKB:D5ARP7}; DE AltName: Full=Cytochrome c oxidase subunit III {ECO:0000250|UniProtKB:D5ARP7}; GN Name=ccoP {ECO:0000250|UniProtKB:O87196}; OrderedLocusNames=HP_0147; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: C-type cytochrome. Part of the cbb3-type cytochrome c CC oxidase complex. CcoP subunit is required for transferring CC electrons from donor cytochrome c via its heme groups to CcoO CC subunit. From there, electrons are shuttled to the catalytic CC binuclear center of CcoN subunit where oxygen reduction takes CC place. The complex also functions as a proton pump (By CC similarity). {ECO:0000250|UniProtKB:D5ARP7, CC ECO:0000250|UniProtKB:D9IA45, ECO:0000250|UniProtKB:Q3J015}. CC -!- COFACTOR: CC Name=heme c; Xref=ChEBI:CHEBI:61717; CC Evidence={ECO:0000250|UniProtKB:D9IA45}; CC Note=Binds 2 heme C groups per subunit. CC {ECO:0000250|UniProtKB:D9IA45}; CC -!- PATHWAY: Energy metabolism; oxidative phosphorylation. CC {ECO:0000250|UniProtKB:D5ARP7}. CC -!- SUBUNIT: Component of the cbb3-type cytochrome c oxidase at least CC composed of CcoN, CcoO, CcoQ and CcoP. CC {ECO:0000250|UniProtKB:D5ARP7}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000250|UniProtKB:Q8KS19, ECO:0000255}; Multi-pass membrane CC protein {ECO:0000250|UniProtKB:Q8KS19, ECO:0000255}. CC -!- SIMILARITY: Belongs to the CcoP / FixP family. {ECO:0000305}. CC -!- SIMILARITY: Contains 2 cytochrome c domains. {ECO:0000255|PROSITE- CC ProRule:PRU00433}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07216.1; -; Genomic_DNA. DR PIR; C64538; C64538. DR RefSeq; NP_206946.1; NC_000915.1. DR RefSeq; WP_010875445.1; NC_018939.1. DR ProteinModelPortal; O24958; -. DR STRING; 85962.HP0147; -. DR PaxDb; O24958; -. DR PRIDE; O24958; -. DR EnsemblBacteria; AAD07216; AAD07216; HP_0147. DR GeneID; 899135; -. DR KEGG; heo:C694_00730; -. DR KEGG; hpy:HP0147; -. DR PATRIC; 20591513; VBIHelPyl33062_0156. DR eggNOG; ENOG4107UIK; Bacteria. DR eggNOG; COG2010; LUCA. DR KO; K00406; -. DR OMA; AKWKNLG; -. DR OrthoDB; EOG6H4K86; -. DR UniPathway; UPA00705; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0070469; C:respiratory chain; IEA:UniProtKB-KW. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0006119; P:oxidative phosphorylation; IEA:UniProtKB-UniPathway. DR GO; GO:0015992; P:proton transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.760.10; -; 2. DR InterPro; IPR032858; CcoP_N. DR InterPro; IPR009056; Cyt_c-like_dom. DR InterPro; IPR004678; Cyt_c_oxidase_cbb3_su3. DR Pfam; PF13442; Cytochrome_CBB3; 2. DR Pfam; PF14715; FixP_N; 1. DR PIRSF; PIRSF000006; Cbb3-Cox_fixP; 1. DR SUPFAM; SSF46626; SSF46626; 2. DR TIGRFAMs; TIGR00782; ccoP; 1. DR PROSITE; PS51007; CYTC; 2. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; KW Electron transport; Heme; Hydrogen ion transport; Ion transport; Iron; KW Membrane; Metal-binding; Oxidoreductase; Reference proteome; Repeat; KW Respiratory chain; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 286 Cbb3-type cytochrome c oxidase subunit FT CcoP. FT /FTId=PRO_0000412285. FT TRANSMEM 11 31 Helical. {ECO:0000255}. FT TRANSMEM 62 82 Helical. {ECO:0000255}. FT DOMAIN 116 195 Cytochrome c 1. {ECO:0000255|PROSITE- FT ProRule:PRU00433}. FT DOMAIN 205 286 Cytochrome c 2. {ECO:0000255|PROSITE- FT ProRule:PRU00433}. FT METAL 133 133 Iron (heme C 1 axial ligand). FT {ECO:0000250|UniProtKB:D9IA45}. FT METAL 174 174 Iron (heme C 2 axial ligand). FT {ECO:0000250|UniProtKB:D9IA45}. FT METAL 223 223 Iron (heme C 2 axial ligand). FT {ECO:0000250|UniProtKB:D9IA45}. FT METAL 264 264 Iron (heme C 1 axial ligand). FT {ECO:0000250|UniProtKB:D9IA45}. FT BINDING 129 129 Heme C 1 (covalent). FT {ECO:0000250|UniProtKB:D9IA45}. FT BINDING 132 132 Heme C 1 (covalent). FT {ECO:0000250|UniProtKB:D9IA45}. FT BINDING 219 219 Heme C 2 (covalent). FT {ECO:0000250|UniProtKB:D9IA45}. FT BINDING 222 222 Heme C 2 (covalent). FT {ECO:0000250|UniProtKB:D9IA45}. SQ SEQUENCE 286 AA; 31866 MW; 91C569BC60C1D602 CRC64; MDFLNDHINV FGLIAALVIL VLTIYESSSL IKEMRDSKSQ GELVENGHLI DGIGEFANNV PVGWIASFMC TIVWAFWYFF FGYPLNSFSQ IGQYNEEVKA HNQKFEAKWK HLGQKELVDM GQGIFLVHCS QCHGITAEGL HGSAQNLVRW GKEEGIMDTI KHGSKGMDYL AGEMPAMELD EKDAKAIASY VMAELSSVKK TKNPQLIDKG KELFESMGCT GCHGNDGKGL QENQVFAADL TAYGTENFLR NILTHGKKGN IGHMPSFKYK NFSDLQVKAL LNLSNR // ID CATA_HELPY Reviewed; 505 AA. AC P77872; P94823; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 113. DE RecName: Full=Catalase; DE EC=1.11.1.6; GN Name=katA; OrderedLocusNames=HP_0875; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=RU1; RX PubMed=9546115; DOI=10.1046/j.1523-5378.1998.08030.x; RA Manos J., Kolesnikow T., Hazell S.L.; RT "An investigation of the molecular basis of the spontaneous occurrence RT of a catalase-negative phenotype in Helicobacter pylori."; RL Helicobacter 3:28-38(1998). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=P1; RX PubMed=8955320; RA Odenbreit S., Wieland B., Haas R.; RT "Cloning and genetic characterization of Helicobacter pylori catalase RT and construction of a catalase-deficient mutant strain."; RL J. Bacteriol. 178:6960-6967(1996). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Decomposes hydrogen peroxide into water and oxygen; CC serves to protect cells from the toxic effects of hydrogen CC peroxide. CC -!- CATALYTIC ACTIVITY: 2 H(2)O(2) = O(2) + 2 H(2)O. CC {ECO:0000255|PROSITE-ProRule:PRU10013}. CC -!- COFACTOR: CC Name=heme; Xref=ChEBI:CHEBI:30413; CC -!- INTERACTION: CC O25542:HP_0874; NbExp=3; IntAct=EBI-7585674, EBI-7585664; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the catalase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U67458; AAC16068.1; -; Genomic_DNA. DR EMBL; Z70679; CAA94567.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07923.1; -; Genomic_DNA. DR PIR; C64629; C64629. DR RefSeq; NP_207669.1; NC_000915.1. DR RefSeq; WP_000247370.1; NC_018939.1. DR PDB; 1QWL; X-ray; 1.60 A; A/B=1-505. DR PDB; 1QWM; X-ray; 1.60 A; A/B=1-505. DR PDB; 2A9E; X-ray; 1.76 A; A/B=1-505. DR PDB; 2IQF; X-ray; 1.86 A; A/B=1-505. DR PDBsum; 1QWL; -. DR PDBsum; 1QWM; -. DR PDBsum; 2A9E; -. DR PDBsum; 2IQF; -. DR ProteinModelPortal; P77872; -. DR SMR; P77872; 1-491. DR DIP; DIP-3559N; -. DR IntAct; P77872; 2. DR MINT; MINT-165967; -. DR STRING; 85962.HP0875; -. DR PaxDb; P77872; -. DR PRIDE; P77872; -. DR EnsemblBacteria; AAD07923; AAD07923; HP_0875. DR GeneID; 899404; -. DR KEGG; heo:C694_04480; -. DR KEGG; hpy:HP0875; -. DR PATRIC; 20593039; VBIHelPyl33062_0907. DR eggNOG; ENOG4105CH6; Bacteria. DR eggNOG; COG0753; LUCA. DR KO; K03781; -. DR OMA; WDYRADD; -. DR OrthoDB; EOG6P5Z9F; -. DR SABIO-RK; P77872; -. DR EvolutionaryTrace; P77872; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004096; F:catalase activity; IEA:UniProtKB-EC. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0042744; P:hydrogen peroxide catabolic process; IMP:CACAO. DR GO; GO:0006979; P:response to oxidative stress; IEA:InterPro. DR Gene3D; 2.40.180.10; -; 1. DR InterPro; IPR018028; Catalase. DR InterPro; IPR020835; Catalase-like_dom. DR InterPro; IPR024708; Catalase_AS. DR InterPro; IPR024711; Catalase_clade1/3. DR InterPro; IPR011614; Catalase_core. DR InterPro; IPR002226; Catalase_haem_BS. DR InterPro; IPR010582; Catalase_immune_responsive. DR PANTHER; PTHR11465; PTHR11465; 1. DR Pfam; PF00199; Catalase; 1. DR Pfam; PF06628; Catalase-rel; 1. DR PIRSF; PIRSF038928; Catalase_clade1-3; 1. DR PRINTS; PR00067; CATALASE. DR SMART; SM01060; Catalase; 1. DR SUPFAM; SSF56634; SSF56634; 1. DR PROSITE; PS00437; CATALASE_1; 1. DR PROSITE; PS00438; CATALASE_2; 1. DR PROSITE; PS51402; CATALASE_3; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Heme; Hydrogen peroxide; KW Iron; Metal-binding; Oxidoreductase; Peroxidase; Reference proteome. FT CHAIN 1 505 Catalase. FT /FTId=PRO_0000084987. FT ACT_SITE 56 56 {ECO:0000255|PROSITE-ProRule:PRU10013}. FT ACT_SITE 129 129 {ECO:0000255|PROSITE-ProRule:PRU10013}. FT METAL 339 339 Iron (heme axial ligand). {ECO:0000250}. FT CONFLICT 82 82 S -> F (in Ref. 1; AAC16068). FT {ECO:0000305}. FT CONFLICT 234 234 V -> I (in Ref. 2; CAA94567). FT {ECO:0000305}. FT CONFLICT 237 237 Y -> H (in Ref. 2; CAA94567). FT {ECO:0000305}. FT CONFLICT 248 248 N -> D (in Ref. 2; CAA94567). FT {ECO:0000305}. FT CONFLICT 255 255 F -> Y (in Ref. 2; CAA94567). FT {ECO:0000305}. FT CONFLICT 286 286 L -> T (in Ref. 2; CAA94567). FT {ECO:0000305}. FT CONFLICT 313 313 A -> V (in Ref. 1; AAC16068). FT {ECO:0000305}. FT CONFLICT 316 316 S -> T (in Ref. 1; AAC16068 and 2; FT CAA94567). {ECO:0000305}. FT STRAND 24 26 {ECO:0000244|PDB:1QWL}. FT HELIX 36 45 {ECO:0000244|PDB:1QWL}. FT STRAND 58 68 {ECO:0000244|PDB:1QWL}. FT TURN 73 75 {ECO:0000244|PDB:1QWL}. FT HELIX 79 81 {ECO:0000244|PDB:1QWL}. FT STRAND 87 95 {ECO:0000244|PDB:1QWL}. FT STRAND 105 109 {ECO:0000244|PDB:1QWL}. FT STRAND 112 119 {ECO:0000244|PDB:1QWL}. FT STRAND 122 132 {ECO:0000244|PDB:1QWL}. FT HELIX 139 141 {ECO:0000244|PDB:1QWL}. FT HELIX 142 149 {ECO:0000244|PDB:1QWL}. FT TURN 153 155 {ECO:0000244|PDB:1QWL}. FT HELIX 160 169 {ECO:0000244|PDB:1QWL}. FT HELIX 171 173 {ECO:0000244|PDB:1QWL}. FT HELIX 174 181 {ECO:0000244|PDB:1QWL}. FT HELIX 183 185 {ECO:0000244|PDB:1QWL}. FT STRAND 186 189 {ECO:0000244|PDB:1QWL}. FT HELIX 190 192 {ECO:0000244|PDB:1QWL}. FT STRAND 201 204 {ECO:0000244|PDB:1QWL}. FT STRAND 210 219 {ECO:0000244|PDB:1QWL}. FT HELIX 228 235 {ECO:0000244|PDB:1QWL}. FT HELIX 241 251 {ECO:0000244|PDB:1QWL}. FT STRAND 257 266 {ECO:0000244|PDB:1QWL}. FT HELIX 267 269 {ECO:0000244|PDB:1QWL}. FT TURN 270 272 {ECO:0000244|PDB:1QWL}. FT TURN 286 288 {ECO:0000244|PDB:1QWL}. FT STRAND 292 301 {ECO:0000244|PDB:1QWL}. FT HELIX 306 309 {ECO:0000244|PDB:1QWL}. FT TURN 310 312 {ECO:0000244|PDB:1QWL}. FT HELIX 330 347 {ECO:0000244|PDB:1QWL}. FT HELIX 351 353 {ECO:0000244|PDB:1QWL}. FT HELIX 355 357 {ECO:0000244|PDB:1QWL}. FT TURN 376 379 {ECO:0000244|PDB:1QWL}. FT STRAND 387 389 {ECO:0000244|PDB:1QWL}. FT HELIX 395 397 {ECO:0000244|PDB:1QWL}. FT HELIX 404 406 {ECO:0000244|PDB:1QWL}. FT HELIX 418 421 {ECO:0000244|PDB:1QWL}. FT HELIX 427 435 {ECO:0000244|PDB:1QWL}. FT HELIX 438 452 {ECO:0000244|PDB:1QWL}. FT HELIX 458 471 {ECO:0000244|PDB:1QWL}. FT HELIX 473 489 {ECO:0000244|PDB:1QWL}. SQ SEQUENCE 505 AA; 58629 MW; 9F029B55B73C26EA CRC64; MVNKDVKQTT AFGAPVWDDN NVITAGPRGP VLLQSTWFLE KLAAFDRERI PERVVHAKGS GAYGTFTVTK DITKYTKAKI FSKVGKKTEC FFRFSTVAGE RGSADAVRDP RGFAMKYYTE EGNWDLVGNN TPVFFIRDAI KFPDFIHTQK RDPQTNLPNH DMVWDFWSNV PESLYQVTWV MSDRGIPKSF RHMDGFGSHT FSLINAKGER FWVKFHFHTM QGVKHLTNEE AAEVRKYDPD SNQRDLFNAI ARGDFPKWKL SIQVMPEEDA KKYRFHPFDV TKIWYLQDYP LMEVGIVELN KNPENYFAEV EQAAFSPANV VPGIGYSPDR MLQGRLFSYG DTHRYRLGVN YPQIPVNKPR CPFHSSSRDG YMQNGYYGSL QNYTPSSLPG YKEDKSARDP KFNLAHIEKE FEVWNWDYRA DDSDYYTQPG DYYRSLPADE KERLHDTIGE SLAHVTHKEI VDKQLEHFKK ADPKYAEGVK KALEKHQKMM KDMHGKDMHH TKKKK // ID CH10_HELPY Reviewed; 118 AA. AC P0A0R3; P48225; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 17-FEB-2016, entry version 69. DE RecName: Full=10 kDa chaperonin; DE AltName: Full=GroES protein; DE AltName: Full=Heat shock protein 10; DE AltName: Full=Protein Cpn10; GN Name=groS; Synonyms=groES, hsp10, hspA, mopB; GN OrderedLocusNames=HP_0011; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=7715457; DOI=10.1111/j.1365-2958.1994.tb01331.x; RA Suerbaum S., Thiberge J.-M., Kansau I., Ferrero R.L., Labigne A.; RT "Helicobacter pylori hspA-hspB heat-shock gene cluster: nucleotide RT sequence, expression, putative function and immunogenicity."; RL Mol. Microbiol. 14:959-974(1994). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds to Cpn60 in the presence of Mg-ATP and suppresses CC the ATPase activity of the latter. CC -!- SUBUNIT: Heptamer of 7 subunits arranged in a ring. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GroES chaperonin family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; L23798; AAC41440.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07081.1; -; Genomic_DNA. DR PIR; S61396; S61396. DR RefSeq; NP_206813.1; NC_000915.1. DR RefSeq; WP_000671934.1; NC_018939.1. DR ProteinModelPortal; P0A0R3; -. DR IntAct; P0A0R3; 4. DR MINT; MINT-173683; -. DR STRING; 85962.HP0011; -. DR PaxDb; P0A0R3; -. DR PRIDE; P0A0R3; -. DR EnsemblBacteria; AAD07081; AAD07081; HP_0011. DR GeneID; 899090; -. DR KEGG; heo:C694_00050; -. DR KEGG; hpy:HP0011; -. DR PATRIC; 20591215; VBIHelPyl33062_0009. DR eggNOG; ENOG4105K5Y; Bacteria. DR eggNOG; COG0234; LUCA. DR KO; K04078; -. DR OMA; EHESCCH; -. DR OrthoDB; EOG6GFGSD; -. DR BioCyc; HPY:HP0011-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.33.40; -; 1. DR HAMAP; MF_00580; CH10; 1. DR InterPro; IPR020818; Chaperonin_GroES. DR InterPro; IPR018369; Chaprnonin_Cpn10_CS. DR InterPro; IPR011032; GroES-like. DR PANTHER; PTHR10772; PTHR10772; 1. DR Pfam; PF00166; Cpn10; 1. DR PRINTS; PR00297; CHAPERONIN10. DR SMART; SM00883; Cpn10; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR PROSITE; PS00681; CHAPERONINS_CPN10; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Cytoplasm; Reference proteome; KW Stress response. FT CHAIN 1 118 10 kDa chaperonin. FT /FTId=PRO_0000174764. FT VARIANT 75 75 T -> V (in strain: 85P). SQ SEQUENCE 118 AA; 12991 MW; 5A965CD4C2FF014A CRC64; MKFQPLGERV LVERLEEENK TSSGIIIPDN AKEKPLMGVV KAVSHKISEG CKCVKEGDVI AFGKYKGAEI VLDGTEYMVL ELEDILGIVG SGSCCHTGNH DHKHAKEHEA CCHDHKKH // ID CDH_HELPY Reviewed; 244 AA. AC Q48248; DT 21-FEB-2001, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1998, sequence version 2. DT 11-NOV-2015, entry version 96. DE RecName: Full=CDP-diacylglycerol pyrophosphatase; DE EC=3.6.1.26; DE AltName: Full=CDP-diacylglycerol phosphatidylhydrolase; DE AltName: Full=CDP-diglyceride hydrolase; GN Name=cdh; OrderedLocusNames=HP_0871; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 210-244. RC STRAIN=951, and DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=7891557; DOI=10.1111/j.1365-2958.1994.tb01307.x; RA O'Toole P.W., Kostrzynska M., Trust T.J.; RT "Non-motile mutants of Helicobacter pylori and Helicobacter mustelae RT defective in flagellar hook production."; RL Mol. Microbiol. 14:691-703(1994). CC -!- CATALYTIC ACTIVITY: CDP-diacylglycerol + H(2)O = CMP + CC phosphatidate. CC -!- PATHWAY: Phospholipid metabolism; CDP-diacylglycerol degradation; CC phosphatidate from CDP-diacylglycerol: step 1/1. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Single- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the Cdh family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07921.1; -; Genomic_DNA. DR EMBL; U09549; AAA92802.1; -; Genomic_DNA. DR PIR; G64628; G64628. DR RefSeq; NP_207665.1; NC_000915.1. DR RefSeq; WP_000708956.1; NC_018939.1. DR ProteinModelPortal; Q48248; -. DR SMR; Q48248; 25-243. DR STRING; 85962.HP0871; -. DR PaxDb; Q48248; -. DR PRIDE; Q48248; -. DR EnsemblBacteria; AAD07921; AAD07921; HP_0871. DR GeneID; 899400; -. DR KEGG; heo:C694_04460; -. DR KEGG; hpy:HP0871; -. DR PATRIC; 20593031; VBIHelPyl33062_0903. DR eggNOG; ENOG4105EAF; Bacteria. DR eggNOG; COG2134; LUCA. DR KO; K01521; -. DR OMA; RWSPLSG; -. DR OrthoDB; EOG6FV82N; -. DR BioCyc; HPY:HP0871-MONOMER; -. DR UniPathway; UPA00609; UER00664. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008715; F:CDP-diacylglycerol diphosphatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046342; P:CDP-diacylglycerol catabolic process; IEA:UniProtKB-UniPathway. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00319; Cdh; 1. DR InterPro; IPR003763; CDP-diacylglyc_Pase. DR InterPro; IPR015993; CDP-diacylglyc_Pase_proteobac. DR InterPro; IPR011146; HIT-like. DR Pfam; PF02611; CDH; 1. DR PIRSF; PIRSF001273; CDH; 1. DR SUPFAM; SSF54197; SSF54197; 1. DR TIGRFAMs; TIGR00672; cdh; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Hydrolase; KW Lipid biosynthesis; Lipid metabolism; Membrane; KW Phospholipid biosynthesis; Phospholipid metabolism; KW Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 244 CDP-diacylglycerol pyrophosphatase. FT /FTId=PRO_0000198577. FT TRANSMEM 7 23 Helical. {ECO:0000255}. SQ SEQUENCE 244 AA; 27516 MW; 0930D0B9B1377C1A CRC64; MKKAGFLFLA VMAIVVMSLN AKDPNVLRKI VFEKCLPNYE KNQNPSPCIE VKPDAGYVVL KDINGPLQYL LMPTTHISGI ESPLLLDPST PNFFYLSWQA RDFMSKKYGQ PIPDYAISLT INSSKGRSQN HFHIHISCIS LEARKQLDNN LKKINSRWSP LPGGLNGHKY LARRVTESEL VQKSPFVMLN KEVPNAYKRM GDYGLAVVQQ SDNSFVLLAT QFNPLTLNRA SAEEIQDHEC AILH // ID CDSA_HELPY Reviewed; 266 AA. AC O25004; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Phosphatidate cytidylyltransferase; DE EC=2.7.7.41; DE AltName: Full=CDP-DAG synthase; DE AltName: Full=CDP-DG synthase; DE AltName: Full=CDP-diacylglycerol synthase; DE Short=CDS; DE AltName: Full=CDP-diglyceride pyrophosphorylase; DE AltName: Full=CDP-diglyceride synthase; DE AltName: Full=CTP:phosphatidate cytidylyltransferase; GN Name=cdsA; OrderedLocusNames=HP_0215; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: CTP + phosphatidate = diphosphate + CDP- CC diacylglycerol. CC -!- PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CC CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the CDS family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07283.1; -; Genomic_DNA. DR PIR; G64546; G64546. DR RefSeq; NP_207013.1; NC_000915.1. DR RefSeq; WP_000656886.1; NC_018939.1. DR ProteinModelPortal; O25004; -. DR STRING; 85962.HP0215; -. DR PaxDb; O25004; -. DR PRIDE; O25004; -. DR EnsemblBacteria; AAD07283; AAD07283; HP_0215. DR GeneID; 899163; -. DR KEGG; heo:C694_01085; -. DR KEGG; hpy:HP0215; -. DR PATRIC; 20591653; VBIHelPyl33062_0226. DR eggNOG; ENOG4105KNE; Bacteria. DR eggNOG; COG0575; LUCA. DR KO; K00981; -. DR OMA; PVECALI; -. DR OrthoDB; EOG6TBHJT; -. DR BioCyc; HPY:HP0215-MONOMER; -. DR UniPathway; UPA00557; UER00614. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004605; F:phosphatidate cytidylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0016024; P:CDP-diacylglycerol biosynthetic process; IEA:UniProtKB-UniPathway. DR InterPro; IPR000374; PC_trans. DR PROSITE; PS01315; CDS; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; KW Lipid biosynthesis; Lipid metabolism; Membrane; KW Nucleotidyltransferase; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 266 Phosphatidate cytidylyltransferase. FT /FTId=PRO_0000090737. FT TRANSMEM 16 36 Helical. {ECO:0000255}. FT TRANSMEM 52 72 Helical. {ECO:0000255}. FT TRANSMEM 78 98 Helical. {ECO:0000255}. FT TRANSMEM 101 121 Helical. {ECO:0000255}. FT TRANSMEM 125 145 Helical. {ECO:0000255}. FT TRANSMEM 164 184 Helical. {ECO:0000255}. FT TRANSMEM 186 206 Helical. {ECO:0000255}. FT TRANSMEM 237 257 Helical. {ECO:0000255}. SQ SEQUENCE 266 AA; 28899 MW; 4995F8D1B92904F4 CRC64; MKEELFKEKS RYITGFVLII VADLILYADN LLLFWAVLGG IYAVGFSEAL RLFQVKASFS LYLILVLSWV AAYFNGRPIE CALISAMVMA SVIAYQKAHH SEAILPFLYP GVGFFALFGV YKDFGAVAII WLLVVVVASD VGAFFGGKLL GKTPFTPTSP NKTLEGALIG VVLASVLGSF VGMGKLSGGF FMALFFSFLI ALVAVFGDLY ESYLKRKVGI KDSGKILPGH GGVLDRLDSM LFGALGLHAL LYFLEIWKET AVFLGD // ID CH60_HELPY Reviewed; 546 AA. AC P42383; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 107. DE RecName: Full=60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; DE AltName: Full=GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; DE AltName: Full=Heat shock protein 60; DE AltName: Full=Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; GN Name=groL {ECO:0000255|HAMAP-Rule:MF_00600}; GN Synonyms=groEL {ECO:0000255|HAMAP-Rule:MF_00600}, hsp60, hspB, mopA; GN OrderedLocusNames=HP_0010; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8105364; DOI=10.1111/j.1365-2958.1993.tb01724.x; RA Macchia G., Massone A., Burroni D., Covacci A., Censini S., RA Rappuoli R.; RT "The Hsp60 protein of Helicobacter pylori: structure and immune RT response in patients with gastroduodenal diseases."; RL Mol. Microbiol. 9:645-652(1993). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=7715457; DOI=10.1111/j.1365-2958.1994.tb01331.x; RA Suerbaum S., Thiberge J.-M., Kansau I., Ferrero R.L., Labigne A.; RT "Helicobacter pylori hspA-hspB heat-shock gene cluster: nucleotide RT sequence, expression, putative function and immunogenicity."; RL Mol. Microbiol. 14:959-974(1994). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Prevents misfolding and promotes the refolding and CC proper assembly of unfolded polypeptides generated under stress CC conditions. {ECO:0000255|HAMAP-Rule:MF_00600}. CC -!- SUBUNIT: Oligomer of 14 subunits composed of two stacked rings of CC 7 subunits. {ECO:0000255|HAMAP-Rule:MF_00600}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00600}. CC -!- SIMILARITY: Belongs to the chaperonin (HSP60) family. CC {ECO:0000255|HAMAP-Rule:MF_00600}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; X73840; CAA52062.1; -; Genomic_DNA. DR EMBL; L23798; AAC41441.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07080.1; -; Genomic_DNA. DR PIR; B64521; S36237. DR RefSeq; NP_206812.1; NC_000915.1. DR RefSeq; WP_001040293.1; NC_018939.1. DR ProteinModelPortal; P42383; -. DR SMR; P42383; 2-521. DR DIP; DIP-3069N; -. DR IntAct; P42383; 11. DR MINT; MINT-164875; -. DR STRING; 85962.HP0010; -. DR PaxDb; P42383; -. DR PRIDE; P42383; -. DR EnsemblBacteria; AAD07080; AAD07080; HP_0010. DR GeneID; 899089; -. DR KEGG; heo:C694_00045; -. DR KEGG; hpy:HP0010; -. DR PATRIC; 20591213; VBIHelPyl33062_0008. DR eggNOG; ENOG4105CJ9; Bacteria. DR eggNOG; COG0459; LUCA. DR KO; K04077; -. DR OMA; IHQGKIS; -. DR OrthoDB; EOG6JDWBZ; -. DR BioCyc; HPY:HP0010-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042026; P:protein refolding; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.560.10; -; 2. DR Gene3D; 3.50.7.10; -; 1. DR HAMAP; MF_00600; CH60; 1. DR InterPro; IPR018370; Chaperonin_Cpn60_CS. DR InterPro; IPR001844; Chaprnin_Cpn60. DR InterPro; IPR002423; Cpn60/TCP-1. DR InterPro; IPR027409; GroEL-like_apical_dom. DR InterPro; IPR027413; GROEL-like_equatorial. DR Pfam; PF00118; Cpn60_TCP1; 1. DR PRINTS; PR00298; CHAPERONIN60. DR SUPFAM; SSF52029; SSF52029; 1. DR TIGRFAMs; TIGR02348; GroEL; 1. DR PROSITE; PS00296; CHAPERONINS_CPN60; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Complete proteome; Cytoplasm; KW Nucleotide-binding; Reference proteome; Stress response. FT CHAIN 1 546 60 kDa chaperonin. FT /FTId=PRO_0000063389. FT VARIANT 76 76 V -> D (in strain: 85P). FT VARIANT 123 123 A -> P (in strain: 85P). FT VARIANT 293 293 I -> V (in strain: 85P). FT VARIANT 320 321 GR -> K (in strain: 85P). FT CONFLICT 339 339 H -> D (in Ref. 1; CAA52062). FT {ECO:0000305}. FT CONFLICT 527 527 A -> T (in Ref. 1; CAA52062). FT {ECO:0000305}. SQ SEQUENCE 546 AA; 58264 MW; 00E5DB7FAAC82282 CRC64; MAKEIKFSDS ARNLLFEGVR QLHDAVKVTM GPRGRNVLIQ KSYGAPSITK DGVSVAKEIE LSCPVANMGA QLVKEVASKT ADAAGDGTTT ATVLAYSIFK EGLRNITAGA NPIEVKRGMD KAAEAIINEL KKASKKVGGK EEITQVATIS ANSDHNIGKL IADAMEKVGK DGVITVEEAK GIEDELDVVE GMQFDRGYLS PYFVTNAEKM TAQLDNAYIL LTDKKISSMK DILPLLEKTM KEGKPLLIIA EDIEGEALTT LVVNKLRGVL NIAAVKAPGF GDRRKEMLKD IAILTGGQVI SEELGLSLEN AEVEFLGKAG RIVIDKDNTT IVDGKGHSHD VKDRVAQIKT QIASTTSDYD KEKLQERLAK LSGGVAVIKV GAASEVEMKE KKDRVDDALS ATKAAVEEGI VIGGGAALIR AAQKVHLNLH DDEKVGYEII MRAIKAPLAQ IAINAGYDGG VVVNEVEKHE GHFGFNASNG KYVDMFKEGI IDPLKVERIA LQNAVSVSSL LLTTEATVHE IKEEKAAPAM PDMGGMGGMG GMGGMM // ID CHEY_HELPY Reviewed; 124 AA. AC P71403; O07677; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 107. DE RecName: Full=Chemotaxis protein CheY homolog; GN Name=cheY; OrderedLocusNames=HP_1067; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RA Wren B.W.; RL Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RA Jackson C.J., Pittman M.S., Clayton C.L., McColm A.A., Bagshaw J.A., RA Kelly D.J.; RT "Chemotaxis is essential for virulence in Helicobacter pylori: RT identification of a novel signal transduction protein (CheF) with both RT CheA and CheY domains."; RL Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the transmission of sensory signals from the CC chemoreceptors to the flagellar motors. CheY seems to regulate the CC clockwise (CW) rotation (By similarity). {ECO:0000250}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000250}; CC -!- INTERACTION: CC O25153:HP_0392; NbExp=3; IntAct=EBI-6409045, EBI-6410665; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Contains 1 response regulatory domain. CC {ECO:0000255|PROSITE-ProRule:PRU00169}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA57487.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; X81897; CAA57487.1; ALT_INIT; Genomic_DNA. DR EMBL; U97567; AAB66375.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08113.1; -; Genomic_DNA. DR EMBL; AF021090; AAD01682.1; -; Genomic_DNA. DR PIR; C64653; C64653. DR RefSeq; NP_207858.1; NC_000915.1. DR RefSeq; WP_000772151.1; NC_018939.1. DR PDB; 3GWG; X-ray; 1.80 A; A=1-124. DR PDB; 3H1E; X-ray; 2.40 A; A=1-124. DR PDB; 3H1F; X-ray; 2.20 A; A=1-124. DR PDB; 3H1G; X-ray; 1.70 A; A=1-124. DR PDBsum; 3GWG; -. DR PDBsum; 3H1E; -. DR PDBsum; 3H1F; -. DR PDBsum; 3H1G; -. DR ProteinModelPortal; P71403; -. DR DIP; DIP-3256N; -. DR IntAct; P71403; 4. DR MINT; MINT-160671; -. DR STRING; 85962.HP1067; -. DR PaxDb; P71403; -. DR PRIDE; P71403; -. DR EnsemblBacteria; AAD08113; AAD08113; HP_1067. DR GeneID; 899603; -. DR KEGG; heo:C694_05515; -. DR KEGG; hpy:HP1067; -. DR PATRIC; 20593473; VBIHelPyl33062_1116. DR eggNOG; ENOG4108VYJ; Bacteria. DR eggNOG; COG0784; LUCA. DR KO; K03413; -. DR OMA; TNTHEAD; -. DR OrthoDB; EOG6PKFC7; -. DR BioCyc; HPY:HP1067-MONOMER; -. DR EvolutionaryTrace; P71403; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0097588; P:archaeal or bacterial-type flagellum-dependent cell motility; IEA:UniProtKB-KW. DR GO; GO:0006935; P:chemotaxis; IEA:UniProtKB-KW. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 1: Evidence at protein level; KW 3D-structure; Chemotaxis; Complete proteome; Cytoplasm; KW Flagellar rotation; Magnesium; Metal-binding; Phosphoprotein; KW Reference proteome; Two-component regulatory system. FT CHAIN 1 124 Chemotaxis protein CheY homolog. FT /FTId=PRO_0000081050. FT DOMAIN 2 120 Response regulatory. FT {ECO:0000255|PROSITE-ProRule:PRU00169}. FT METAL 7 7 Magnesium. {ECO:0000250}. FT METAL 8 8 Magnesium. {ECO:0000250}. FT METAL 53 53 Magnesium. {ECO:0000250}. FT METAL 55 55 Magnesium; via carbonyl oxygen. FT {ECO:0000250}. FT MOD_RES 53 53 4-aspartylphosphate. FT {ECO:0000255|PROSITE-ProRule:PRU00169}. FT VARIANT 122 122 T -> A (in strain: NCTC 11637 and NCTC FT 11638). FT STRAND 3 6 {ECO:0000244|PDB:3H1G}. FT HELIX 10 22 {ECO:0000244|PDB:3H1G}. FT STRAND 28 33 {ECO:0000244|PDB:3H1G}. FT HELIX 34 43 {ECO:0000244|PDB:3H1G}. FT STRAND 49 52 {ECO:0000244|PDB:3H1G}. FT STRAND 57 59 {ECO:0000244|PDB:3H1G}. FT HELIX 61 69 {ECO:0000244|PDB:3H1G}. FT STRAND 74 76 {ECO:0000244|PDB:3H1E}. FT STRAND 79 84 {ECO:0000244|PDB:3H1G}. FT HELIX 88 97 {ECO:0000244|PDB:3H1G}. FT STRAND 101 105 {ECO:0000244|PDB:3H1G}. FT HELIX 109 120 {ECO:0000244|PDB:3H1G}. SQ SEQUENCE 124 AA; 13915 MW; F2B40BC0C04FCBFA CRC64; MKLLVVDDSS TMRRIIKNTL SRLGYEDVLE AEHGVEAWEK LDANADTKVL ITDWNMPEMN GLDLVKKVRS DSRFKEIPII MITTEGGKAE VITALKAGVN NYIVKPFTPQ VLKEKLEVVL GTND // ID CLPP_HELPY Reviewed; 196 AA. AC P56156; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 16-MAR-2016, entry version 100. DE RecName: Full=ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}; DE EC=3.4.21.92 {ECO:0000255|HAMAP-Rule:MF_00444}; DE AltName: Full=Endopeptidase Clp {ECO:0000255|HAMAP-Rule:MF_00444}; GN Name=clpP {ECO:0000255|HAMAP-Rule:MF_00444}; GN OrderedLocusNames=HP_0794; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cleaves peptides in various proteins in a process that CC requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a CC major role in the degradation of misfolded proteins. CC {ECO:0000255|HAMAP-Rule:MF_00444}. CC -!- CATALYTIC ACTIVITY: Hydrolysis of proteins to small peptides in CC the presence of ATP and magnesium. Alpha-casein is the usual test CC substrate. In the absence of ATP, only oligopeptides shorter than CC five residues are hydrolyzed (such as succinyl-Leu-Tyr-|-NHMec; CC and Leu-Tyr-Leu-|-Tyr-Trp, in which cleavage of the -Tyr-|-Leu- CC and -Tyr-|-Trp bonds also occurs). {ECO:0000255|HAMAP- CC Rule:MF_00444}. CC -!- SUBUNIT: Fourteen ClpP subunits assemble into 2 heptameric rings CC which stack back to back to give a disk-like structure with a CC central cavity, resembling the structure of eukaryotic CC proteasomes. {ECO:0000255|HAMAP-Rule:MF_00444}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00444}. CC -!- SIMILARITY: Belongs to the peptidase S14 family. CC {ECO:0000255|HAMAP-Rule:MF_00444}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07842.1; -; Genomic_DNA. DR PIR; B64619; B64619. DR RefSeq; NP_207587.1; NC_000915.1. DR RefSeq; WP_001853304.1; NC_000915.1. DR PDB; 2ZL0; X-ray; 2.60 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N=1-196. DR PDB; 2ZL2; X-ray; 2.50 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N=1-196. DR PDB; 2ZL3; X-ray; 2.81 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N=1-196. DR PDB; 2ZL4; X-ray; 2.50 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N=1-196. DR PDBsum; 2ZL0; -. DR PDBsum; 2ZL2; -. DR PDBsum; 2ZL3; -. DR PDBsum; 2ZL4; -. DR ProteinModelPortal; P56156; -. DR SMR; P56156; 20-193. DR DIP; DIP-3357N; -. DR IntAct; P56156; 1. DR MINT; MINT-179817; -. DR STRING; 85962.HP0794; -. DR MEROPS; S14.001; -. DR PaxDb; P56156; -. DR PRIDE; P56156; -. DR EnsemblBacteria; AAD07842; AAD07842; HP_0794. DR GeneID; 898920; -. DR KEGG; hpy:HP0794; -. DR PATRIC; 20592875; VBIHelPyl33062_0826. DR eggNOG; ENOG4105CCQ; Bacteria. DR eggNOG; COG0740; LUCA. DR KO; K01358; -. DR OMA; ARMNELM; -. DR OrthoDB; EOG6Z3KQ0; -. DR BioCyc; HPY:HP0794-MONOMER; -. DR EvolutionaryTrace; P56156; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.226.10; -; 1. DR HAMAP; MF_00444; ClpP; 1. DR InterPro; IPR001907; ClpP. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR023562; ClpP/TepA. DR InterPro; IPR033135; ClpP_His_AS. DR InterPro; IPR018215; ClpP_Ser_AS. DR PANTHER; PTHR10381; PTHR10381; 1. DR Pfam; PF00574; CLP_protease; 1. DR PRINTS; PR00127; CLPPROTEASEP. DR SUPFAM; SSF52096; SSF52096; 1. DR TIGRFAMs; TIGR00493; clpP; 1. DR PROSITE; PS00382; CLP_PROTEASE_HIS; 1. DR PROSITE; PS00381; CLP_PROTEASE_SER; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Hydrolase; Protease; KW Reference proteome; Serine protease. FT CHAIN 1 196 ATP-dependent Clp protease proteolytic FT subunit. FT /FTId=PRO_0000179568. FT ACT_SITE 99 99 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_00444}. FT ACT_SITE 124 124 {ECO:0000255|HAMAP-Rule:MF_00444}. FT HELIX 21 26 {ECO:0000244|PDB:2ZL2}. FT TURN 27 29 {ECO:0000244|PDB:2ZL2}. FT STRAND 30 35 {ECO:0000244|PDB:2ZL2}. FT HELIX 39 55 {ECO:0000244|PDB:2ZL2}. FT STRAND 57 59 {ECO:0000244|PDB:2ZL2}. FT STRAND 61 67 {ECO:0000244|PDB:2ZL2}. FT HELIX 72 84 {ECO:0000244|PDB:2ZL2}. FT STRAND 85 87 {ECO:0000244|PDB:2ZL2}. FT STRAND 89 98 {ECO:0000244|PDB:2ZL2}. FT HELIX 100 105 {ECO:0000244|PDB:2ZL2}. FT STRAND 113 115 {ECO:0000244|PDB:2ZL2}. FT STRAND 120 123 {ECO:0000244|PDB:2ZL2}. FT STRAND 127 133 {ECO:0000244|PDB:2ZL2}. FT HELIX 134 159 {ECO:0000244|PDB:2ZL2}. FT HELIX 163 169 {ECO:0000244|PDB:2ZL2}. FT STRAND 174 177 {ECO:0000244|PDB:2ZL2}. FT HELIX 178 183 {ECO:0000244|PDB:2ZL2}. FT STRAND 188 190 {ECO:0000244|PDB:2ZL2}. SQ SEQUENCE 196 AA; 21526 MW; 4E19BE5FE44656B0 CRC64; MMGYIPYVIE NTDRGERSYD IYSRLLKDRI VLLSGEINDS VASSIVAQLL FLEAEDPEKD IGLYINSPGG VITSGLSIYD TMNFIRPDVS TICIGQAASM GAFLLSCGAK GKRFSLPHSR IMIHQPLGGA QGQASDIEII SNEILRLKGL MNSILAQNSG QSLEQIAKDT DRDFYMSAKE AKEYGLIDKV LQKNVK // ID CLPX_HELPY Reviewed; 446 AA. AC O25926; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 110. DE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; GN Name=clpX {ECO:0000255|HAMAP-Rule:MF_00175}; GN OrderedLocusNames=HP_1374; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 431-446. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RA Perez-Casal J.F., O'Toole P.W., Trust T.J.; RL Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases. RN [3] RP X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 71-446 IN COMPLEX WITH ADP, RP AND SUBUNIT. RX PubMed=14514695; DOI=10.1074/jbc.M305882200; RA Kim D.Y., Kim K.K.; RT "Crystal structure of ClpX molecular chaperone from Helicobacter RT pylori."; RL J. Biol. Chem. 278:50664-50670(2003). CC -!- FUNCTION: ATP-dependent specificity component of the Clp protease. CC It directs the protease to specific substrates. Can perform CC chaperone functions in the absence of ClpP. {ECO:0000255|HAMAP- CC Rule:MF_00175}. CC -!- SUBUNIT: Component of the ClpX-ClpP complex. Forms a hexameric CC ring that, in the presence of ATP, binds to fourteen ClpP subunits CC assembled into a disk-like structure with a central cavity, CC resembling the structure of eukaryotic proteasomes. CC {ECO:0000255|HAMAP-Rule:MF_00175, ECO:0000269|PubMed:14514695}. CC -!- SIMILARITY: Belongs to the ClpX chaperone family. CC {ECO:0000255|HAMAP-Rule:MF_00175}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08417.1; -; Genomic_DNA. DR EMBL; U95641; AAC04557.1; -; Genomic_DNA. DR PIR; F64691; F64691. DR RefSeq; NP_208165.1; NC_000915.1. DR RefSeq; WP_001006287.1; NC_018939.1. DR PDB; 1UM8; X-ray; 2.60 A; A=71-446. DR PDBsum; 1UM8; -. DR ProteinModelPortal; O25926; -. DR SMR; O25926; 75-438. DR DIP; DIP-3286N; -. DR IntAct; O25926; 4. DR MINT; MINT-176903; -. DR STRING; 85962.HP1374; -. DR PaxDb; O25926; -. DR PRIDE; O25926; -. DR EnsemblBacteria; AAD08417; AAD08417; HP_1374. DR GeneID; 900311; -. DR KEGG; heo:C694_07090; -. DR KEGG; hpy:HP1374; -. DR PATRIC; 20594137; VBIHelPyl33062_1439. DR eggNOG; ENOG4105CHN; Bacteria. DR eggNOG; COG1219; LUCA. DR KO; K03544; -. DR OMA; HYKRVQA; -. DR OrthoDB; EOG625JZK; -. DR BioCyc; HPY:HP1374-MONOMER; -. DR EvolutionaryTrace; O25926; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00175; ClpX; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR019489; Clp_ATPase_C. DR InterPro; IPR004487; Clp_protease_ATP-bd_su_ClpX. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR010603; Znf_CppX_C4. DR Pfam; PF07724; AAA_2; 1. DR Pfam; PF10431; ClpB_D2-small; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM01086; ClpB_D2-small; 1. DR SMART; SM00994; zf-C4_ClpX; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00382; clpX; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Chaperone; Complete proteome; KW Metal-binding; Nucleotide-binding; Reference proteome; Zinc; KW Zinc-finger. FT CHAIN 1 446 ATP-dependent Clp protease ATP-binding FT subunit ClpX. FT /FTId=PRO_0000160365. FT ZN_FING 7 39 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00175}. FT NP_BIND 150 157 ATP. FT HELIX 82 90 {ECO:0000244|PDB:1UM8}. FT HELIX 97 123 {ECO:0000244|PDB:1UM8}. FT HELIX 126 137 {ECO:0000244|PDB:1UM8}. FT STRAND 145 148 {ECO:0000244|PDB:1UM8}. FT HELIX 155 165 {ECO:0000244|PDB:1UM8}. FT STRAND 170 174 {ECO:0000244|PDB:1UM8}. FT HELIX 175 177 {ECO:0000244|PDB:1UM8}. FT HELIX 190 198 {ECO:0000244|PDB:1UM8}. FT TURN 199 201 {ECO:0000244|PDB:1UM8}. FT HELIX 203 206 {ECO:0000244|PDB:1UM8}. FT STRAND 209 214 {ECO:0000244|PDB:1UM8}. FT HELIX 216 218 {ECO:0000244|PDB:1UM8}. FT HELIX 235 246 {ECO:0000244|PDB:1UM8}. FT STRAND 274 279 {ECO:0000244|PDB:1UM8}. FT HELIX 284 287 {ECO:0000244|PDB:1UM8}. FT TURN 288 290 {ECO:0000244|PDB:1UM8}. FT TURN 306 311 {ECO:0000244|PDB:1UM8}. FT HELIX 313 315 {ECO:0000244|PDB:1UM8}. FT HELIX 318 323 {ECO:0000244|PDB:1UM8}. FT HELIX 328 331 {ECO:0000244|PDB:1UM8}. FT STRAND 336 339 {ECO:0000244|PDB:1UM8}. FT HELIX 345 353 {ECO:0000244|PDB:1UM8}. FT HELIX 359 368 {ECO:0000244|PDB:1UM8}. FT TURN 369 371 {ECO:0000244|PDB:1UM8}. FT STRAND 373 376 {ECO:0000244|PDB:1UM8}. FT HELIX 378 390 {ECO:0000244|PDB:1UM8}. FT HELIX 395 397 {ECO:0000244|PDB:1UM8}. FT HELIX 398 411 {ECO:0000244|PDB:1UM8}. FT HELIX 413 416 {ECO:0000244|PDB:1UM8}. FT STRAND 419 423 {ECO:0000244|PDB:1UM8}. FT HELIX 425 428 {ECO:0000244|PDB:1UM8}. FT STRAND 435 437 {ECO:0000244|PDB:1UM8}. SQ SEQUENCE 446 AA; 50353 MW; F0C6E623F6A17633 CRC64; MNETLYCSFC KKPESRDPKK RRIIFASNLN KDVCVCEYCI DVMHGELHKY DNSLLALKRD RLRRMESSAY EEEFLLSYIP APKELKAVLD NYVIGQEQAK KVFSVAVYNH YKRLSFKEKL KKQDNQDSNV ELEHLEEVEL SKSNILLIGP TGSGKTLMAQ TLAKHLDIPI AISDATSLTE AGYVGEDVEN ILTRLLQASD WNVQKAQKGI VFIDEIDKIS RLSENRSITR DVSGEGVQQA LLKIVEGSLV NIPPKGGRKH PEGNFIQIDT SDILFICAGA FDGLAEIIKK RTTQNVLGFT QEKMSKKEQE AILHLVQTHD LVTYGLIPEL IGRLPVLSTL DSISLEAMVD ILQKPKNALI KQYQQLFKMD EVDLIFEEEA IKEIAQLALE RKTGARGLRA IIEDFCLDIM FDLPKLKGSE VRITKDCVLK QAEPLIIAKT HSKILP // ID CLPB_HELPY Reviewed; 856 AA. AC P71404; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 20-JAN-2016, entry version 101. DE RecName: Full=Chaperone protein ClpB; GN Name=clpB; OrderedLocusNames=HP_0264; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=9440536; RA Allan E., Mullany P., Tabaqchali S.; RT "Construction and characterization of a Helicobacter pylori clpB RT mutant and role of the gene in the stress response."; RL J. Bacteriol. 180:426-429(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of a stress-induced multi-chaperone system, it is CC involved in the recovery of the cell from heat-induced damage, in CC cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the CC processing of protein aggregates. Protein binding stimulates the CC ATPase activity; ATP hydrolysis unfolds the denatured protein CC aggregates, which probably helps expose new hydrophobic binding CC sites on the surface of ClpB-bound aggregates, contributing to the CC solubilization and refolding of denatured protein aggregates by CC DnaK (By similarity). Necessary for surviving high-temperature CC stress. {ECO:0000250}. CC -!- SUBUNIT: Homohexamer. The oligomerization is ATP-dependent (By CC similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- DOMAIN: The N-terminal domain probably functions as a substrate- CC discriminating domain, recruiting aggregated proteins to the ClpB CC hexamer and/or stabilizing bound proteins. The NBD2 domain is CC responsible for oligomerization, whereas the NBD1 domain CC stabilizes the hexamer probably in an ATP-dependent manner. The CC movement of the coiled-coil domain is essential for ClpB ability CC to rescue proteins from an aggregated state, probably by pulling CC apart large aggregated proteins, which are bound between the CC coiled-coils motifs of adjacent ClpB subunits in the functional CC hexamer (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ClpA/ClpB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; Y08238; CAA69406.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07330.1; -; Genomic_DNA. DR PIR; H64552; H64552. DR RefSeq; NP_207062.1; NC_000915.1. DR RefSeq; WP_001048043.1; NC_018939.1. DR ProteinModelPortal; P71404; -. DR SMR; P71404; 155-348. DR DIP; DIP-3665N; -. DR IntAct; P71404; 1. DR MINT; MINT-167754; -. DR STRING; 85962.HP0264; -. DR PaxDb; P71404; -. DR PRIDE; P71404; -. DR EnsemblBacteria; AAD07330; AAD07330; HP_0264. DR GeneID; 899187; -. DR KEGG; heo:C694_01335; -. DR KEGG; hpy:HP0264; -. DR PATRIC; 20591755; VBIHelPyl33062_0275. DR eggNOG; ENOG4105C2Z; Bacteria. DR eggNOG; COG0542; LUCA. DR KO; K03695; -. DR OMA; YVGFNIQ; -. DR OrthoDB; EOG65F8SM; -. DR BioCyc; HPY:HP0264-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0019538; P:protein metabolic process; IEA:InterPro. DR Gene3D; 1.10.1780.10; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR019489; Clp_ATPase_C. DR InterPro; IPR004176; Clp_N. DR InterPro; IPR001270; ClpA/B. DR InterPro; IPR018368; ClpA/B_CS1. DR InterPro; IPR028299; ClpA/B_CS2. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 1. DR Pfam; PF07724; AAA_2; 1. DR Pfam; PF02861; Clp_N; 2. DR Pfam; PF10431; ClpB_D2-small; 1. DR PRINTS; PR00300; CLPPROTEASEA. DR SMART; SM00382; AAA; 2. DR SMART; SM01086; ClpB_D2-small; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF81923; SSF81923; 1. DR PROSITE; PS00870; CLPAB_1; 1. DR PROSITE; PS00871; CLPAB_2; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Coiled coil; Complete proteome; Cytoplasm; KW Nucleotide-binding; Reference proteome; Repeat; Stress response. FT CHAIN 1 856 Chaperone protein ClpB. FT /FTId=PRO_0000191130. FT NP_BIND 204 211 ATP 1. {ECO:0000250}. FT NP_BIND 605 612 ATP 2. {ECO:0000250}. FT REGION 1 141 N-terminal. {ECO:0000250}. FT REGION 157 337 NBD1. {ECO:0000250}. FT REGION 338 545 Linker. {ECO:0000250}. FT REGION 555 763 NBD2. {ECO:0000250}. FT REGION 764 856 C-terminal. {ECO:0000250}. FT COILED 388 522 {ECO:0000250}. FT CONFLICT 14 14 T -> A (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 33 33 M -> L (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 59 59 Q -> E (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 62 62 R -> K (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 79 79 S -> N (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 103 103 R -> T (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 119 119 G -> S (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 131 131 A -> T (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 145 145 R -> A (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 149 149 D -> G (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 222 222 M -> V (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 435 435 A -> H (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 465 465 V -> A (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 643 644 MS -> IT (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 649 649 A -> P (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 734 734 E -> D (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 765 765 D -> G (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 836 836 V -> I (in Ref. 1; CAA69406). FT {ECO:0000305}. FT CONFLICT 840 840 D -> G (in Ref. 1; CAA69406). FT {ECO:0000305}. SQ SEQUENCE 856 AA; 96684 MW; E3902C7D989496AD CRC64; MNLFEKMTDQ LHETLDSALA LALHHKNAEV TPMHMLFAML NNSQGILIQA LQKMPVDIQA LRLSVQSELN KFAKVSQISK QNIQLNQALI QSLENAQGLM AKRGDSFIAT DVYLLANMGL FESVLKPYLD AKELQKTLES LRKGRTIQDK NDDSNLESLE KFGIDLTQKA LENKLDPVIG RDEEIIRMMQ ILIRKTKNNP ILLGEPGVGK TAVVEGLAQR IMNKEVPKTL LNKRVIALDL SLLVAGAKYR GEFEERLKKV IEEVKKSANV ILFIDEIHTI VGAGASEGGM DAANILKPAL ARGELHTIGA TTLKEYRKYF EKDMALQRRF QPILLNEPSI NEALQILRGL KETLETHHNI TINDSALIAS AKLSSRYITD RFLPDKAIDL IDEGAAQLKM QMESEPAKLS SVKRSIQRLE MEKQALEMEK KESNAKRMQE ILKELSDLKE EKIQLEAQFE NEKEVFKEIS RLKMEMESLK KEAERFKRNG DYQQAGEIEY SKIPENKKKE EELQRKWEAM QQNGALLQNA LTENNIAEIV SQWTHIPVQK MLQSEKNRVL NIESELQKRV VGQEKAIKAI AKAIKRNKAG LSDSNKPIGS FLFLGPTGVG KTESAKALAQ FLFDSDKNLI RIDMSEYLEK HAMSRLIGAA PGYVGYEEGG QLTEAVRRKP YSVVLLDEVE KAHPDVFNLL LQVLDEGHLT DSKGVRVDFK NTILILTSNV ASGALLEENL SEAEKQKAIK ESLRQFFKPE FLNRLDEIIS FNALDSHAVI NIVGILFENI QKKALERGIN ITLDEEAKEL IAEAGFDRFY GARPLKRALY EMVEDKLAEL ILEDKVKEND SVAFVVENNE IVPKIK // ID CNPDE_HELPY Reviewed; 348 AA. AC O25683; DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 70. DE RecName: Full=3',5'-cyclic-nucleotide phosphodiesterase; DE EC=3.1.4.17; DE AltName: Full=cAMP/cGMP phosphodiesterase; GN OrderedLocusNames=HP_1042; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, CATALYTIC ACTIVITY, RP COFACTOR, SUBSTRATE SPECIFICITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Hydrolyzes cAMP to 5'-AMP and cGMP to 5'-GMP. Does not CC show phosphohydrolase activity toward various phosphatidylcholine CC and phosphorylated sugars. {ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: Nucleoside 3',5'-cyclic phosphate + H(2)O = CC nucleoside 5'-phosphate. {ECO:0000269|PubMed:23825549}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000269|PubMed:23825549}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.88 mM for cAMP {ECO:0000269|PubMed:23825549}; CC KM=0.82 mM for cGMP {ECO:0000269|PubMed:23825549}; CC KM=0.53 mM for bis-p-nitrophenylphosphate CC {ECO:0000269|PubMed:23825549}; CC Note=kcat is 2008 min(-1) and 957 min(-1) with cAMP and cGMP as CC substrate, respectively.; CC pH dependence: CC Optimum pH is 4.0-4.5. {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is 30-40 degrees Celsius. CC {ECO:0000269|PubMed:23825549}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08096.1; -; Genomic_DNA. DR PIR; B64650; B64650. DR RefSeq; NP_207832.1; NC_000915.1. DR RefSeq; WP_000984056.1; NC_000915.1. DR ProteinModelPortal; O25683; -. DR STRING; 85962.HP1042; -. DR PaxDb; O25683; -. DR PRIDE; O25683; -. DR EnsemblBacteria; AAD08096; AAD08096; HP_1042. DR GeneID; 899577; -. DR KEGG; hpy:HP1042; -. DR PATRIC; 20593421; VBIHelPyl33062_1091. DR eggNOG; ENOG4108KA0; Bacteria. DR eggNOG; COG2404; LUCA. DR KO; K07097; -. DR OMA; NANYGRE; -. DR OrthoDB; EOG6130BH; -. DR BioCyc; HPY:HP1042-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004114; F:3',5'-cyclic-nucleotide phosphodiesterase activity; IEA:UniProtKB-EC. DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW. PE 1: Evidence at protein level; KW cAMP; cGMP; Complete proteome; Hydrolase; Manganese; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 348 3',5'-cyclic-nucleotide FT phosphodiesterase. FT /FTId=PRO_0000424564. SQ SEQUENCE 348 AA; 40223 MW; BE5DD03EA971AEAB CRC64; MMQVYHLSHI DLDGYACQLV SKQFFKNIQC YNANYGREVS ARIYEILNAI AQSKESEFLI LVSDLNLNLN EAEYLQDKIQ EHRLQNKNIQ IQLLDHHISG KEVAESFHWY FLDINRCATK IVYEFLKKHY AILEPKNTTW LEPLVEMVNS VDIWDTQGYG FELGKVCMRM INQSSELNRF MFDDENRNYK LKLLEEVKNY LFLENAPVAY DNDLFKLKKI ALGGDPDAET MDNISSNAQT HLLSLKKHDC SVYYQDKKGF LSYSMGGISV LANLFLTQNP DFDFYMDVNA KGNVSLRANG NCDVCELSQM CFNGGGHRNA SGGKIDGFRE SFNYRDIKEQ IEEIFNNA // ID CISY_HELPY Reviewed; 426 AA. AC P56062; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Citrate synthase; DE EC=2.3.3.16; GN Name=gltA; OrderedLocusNames=HP_0026; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + H(2)O + oxaloacetate = citrate + CC CoA. {ECO:0000255|PROSITE-ProRule:PRU10117}. CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; CC isocitrate from oxaloacetate: step 1/2. CC -!- MISCELLANEOUS: Citrate synthase is found in nearly all cells CC capable of oxidative metabolism. CC -!- SIMILARITY: Belongs to the citrate synthase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07097.1; -; Genomic_DNA. DR PIR; B64523; B64523. DR RefSeq; NP_206828.1; NC_000915.1. DR RefSeq; WP_000117507.1; NC_018939.1. DR ProteinModelPortal; P56062; -. DR DIP; DIP-3680N; -. DR IntAct; P56062; 2. DR MINT; MINT-170268; -. DR STRING; 85962.HP0026; -. DR PaxDb; P56062; -. DR PRIDE; P56062; -. DR EnsemblBacteria; AAD07097; AAD07097; HP_0026. DR GeneID; 899115; -. DR KEGG; heo:C694_00120; -. DR KEGG; hpy:HP0026; -. DR PATRIC; 20591249; VBIHelPyl33062_0026. DR eggNOG; ENOG4105BZN; Bacteria. DR eggNOG; COG0372; LUCA. DR KO; K01647; -. DR OMA; NKEDGVR; -. DR OrthoDB; EOG6P8TP4; -. DR BioCyc; HPY:HP0026-MONOMER; -. DR UniPathway; UPA00223; UER00717. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046912; F:transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; IEA:InterPro. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniPathway. DR Gene3D; 1.10.230.10; -; 1. DR Gene3D; 1.10.580.10; -; 1. DR InterPro; IPR016142; Citrate_synth-like_lrg_a-sub. DR InterPro; IPR016143; Citrate_synth-like_sm_a-sub. DR InterPro; IPR002020; Citrate_synthase. DR InterPro; IPR019810; Citrate_synthase_AS. DR InterPro; IPR024176; Citrate_synthase_bac-typ. DR PANTHER; PTHR11739; PTHR11739; 1. DR Pfam; PF00285; Citrate_synt; 1. DR PIRSF; PIRSF001369; Citrate_synth; 1. DR PRINTS; PR00143; CITRTSNTHASE. DR SUPFAM; SSF48256; SSF48256; 1. DR PROSITE; PS00480; CITRATE_SYNTHASE; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Transferase; KW Tricarboxylic acid cycle. FT CHAIN 1 426 Citrate synthase. FT /FTId=PRO_0000169946. FT ACT_SITE 314 314 {ECO:0000255|PROSITE-ProRule:PRU10117}. FT ACT_SITE 372 372 {ECO:0000255|PROSITE-ProRule:PRU10117}. SQ SEQUENCE 426 AA; 48350 MW; 7777B67DA74C7C1A CRC64; MSVTLVNNEN NERYEFETIE STRGPKAVDF SKLFETTGFF SYDPGYSSTA GCQSKISYVN GKKGELYYRG HRIEDLVAKY KYVDVCKLLL TGELPKNQDE SLEFELELRH RSFVHESLLN MFSAFPSNAH PMAKLSSGVS ILSTLYSTHQ NMHTEEDYQT MARRIVAKIP TLAAICYRNE VGAPIIYPDI ARSYVENILF MLRGYPYSRL KHTTQGEVEI TPLEVEAFDK ILTLHADHSQ NASSTTVRNV ASTGVHPYAA ISAGISALWG HLHGGANEKV LLQLEEIGDV KNVDKYIARV KDKNDNFKLM GFGHRVYKSY DPRAKILKGL KDELHQKGVK MDERLSEIAA KVEEIALKDE YFIERNLYPN VDFYSGTILR ALKIPVRFFT PVFVIGRTVG WCAQLLEHVK SPQARITRPR QVYVGD // ID CMOB_HELPY Reviewed; 261 AA. AC O25173; DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE RecName: Full=tRNA U34 carboxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_01590}; DE EC=2.5.1.- {ECO:0000255|HAMAP-Rule:MF_01590}; GN Name=cmoB {ECO:0000255|HAMAP-Rule:MF_01590}; GN OrderedLocusNames=HP_0419; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes carboxymethyl transfer from carboxy-S- CC adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form CC 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. CC {ECO:0000255|HAMAP-Rule:MF_01590}. CC -!- CATALYTIC ACTIVITY: 5-hydroxyuridine(34) in tRNA + carboxy-S- CC adenosyl-L-methionine = 5-carboxymethoxyuridine(34) in tRNA + S- CC adenosyl-L-homocysteine. {ECO:0000255|HAMAP-Rule:MF_01590}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01590}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. CmoB family. {ECO:0000255|HAMAP- CC Rule:MF_01590}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07484.1; -; Genomic_DNA. DR PIR; C64572; C64572. DR RefSeq; NP_207217.1; NC_000915.1. DR RefSeq; WP_000903912.1; NC_018939.1. DR ProteinModelPortal; O25173; -. DR DIP; DIP-3114N; -. DR IntAct; O25173; 3. DR MINT; MINT-161290; -. DR STRING; 85962.HP0419; -. DR PaxDb; O25173; -. DR PRIDE; O25173; -. DR EnsemblBacteria; AAD07484; AAD07484; HP_0419. DR GeneID; 898739; -. DR KEGG; heo:C694_02135; -. DR KEGG; hpy:HP0419; -. DR PATRIC; 20592089; VBIHelPyl33062_0434. DR eggNOG; ENOG4105PFA; Bacteria. DR eggNOG; COG0500; LUCA. DR KO; K15257; -. DR OMA; CEWRSDF; -. DR OrthoDB; EOG6PZX8S; -. DR BioCyc; HPY:HP0419-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016300; F:tRNA (uracil) methyltransferase activity; IEA:InterPro. DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_01590; tRNA_carboxymethyltr_CmoB; 1. DR InterPro; IPR027555; mo5U34_MeTrfas-like. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR010017; tRNA_mo5U34_MeTrfase. DR Pfam; PF08003; Methyltransf_9; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00452; TIGR00452; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Transferase; tRNA processing. FT CHAIN 1 261 tRNA U34 carboxymethyltransferase. FT /FTId=PRO_0000313929. FT REGION 114 115 Carboxy-S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01590}. FT BINDING 25 25 Carboxy-S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01590}. FT BINDING 39 39 Carboxy-S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01590}. FT BINDING 44 44 Carboxy-S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01590}. FT BINDING 63 63 Carboxy-S-adenosyl-L-methionine; via FT carbonyl oxygen. {ECO:0000255|HAMAP- FT Rule:MF_01590}. FT BINDING 135 135 Carboxy-S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01590}. FT BINDING 250 250 Carboxy-S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01590}. SQ SEQUENCE 261 AA; 29920 MW; AA67C6A80AC5AE73 CRC64; MLICNDKSNP KTLLEEIMAL RPWRKGPFEI SQIKIDSEWD SSIKWDLVKN ATPLKDKVVA DVGCNNGYYL FKMLEHGPKS LVGFDPGVLV KKQFEFLAPF FDKEKKIIYE SLGVEDLHEK YPNAFDVIFC LGVLYHRKSP LEALKALYHA LKIKGELVLD TLIIDSPLDI ALCPKKTYAK MKNVYFIPSV SALKGWCERV GFENFEILSV LKTTPKEQRK TDFILGQSLE DFLDKTDPSK TLEGYDAPLR GYFKMLKPSK R // ID COAX_HELPY Reviewed; 223 AA. AC O25533; DT 12-DEC-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Type III pantothenate kinase; DE EC=2.7.1.33; DE AltName: Full=PanK-III; DE AltName: Full=Pantothenic acid kinase; GN Name=coaX; Synonyms=coaA; OrderedLocusNames=HP_0862; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, CHARACTERIZATION, ENZYME REGULATION, AND KINETIC PARAMETERS. RC STRAIN=ATCC 700392 / 26695; RX PubMed=15795230; DOI=10.1074/jbc.C500044200; RA Brand L.A., Strauss E.; RT "Characterization of a new pantothenate kinase isoform from RT Helicobacter pylori."; RL J. Biol. Chem. 280:20185-20188(2005). RN [3] RP MUTAGENESIS OF ASP-17; ASP-87 AND ASP-102. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16855243; DOI=10.1128/JB.00469-06; RA Yang K., Eyobo Y., Brand L.A., Martynowski D., Tomchick D., RA Strauss E., Zhang H.; RT "Crystal structure of a type III pantothenate kinase: insight into the RT mechanism of an essential coenzyme A biosynthetic enzyme universally RT distributed in bacteria."; RL J. Bacteriol. 188:5532-5540(2006). RN [4] RP FUNCTION, AND COFACTOR. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16905099; DOI=10.1016/j.str.2006.06.008; RA Hong B.S., Yun M.K., Zhang Y.-M., Chohnan S., Rock C.O., White S.W., RA Jackowski S., Park H.-W., Leonardi R.; RT "Prokaryotic type II and type III pantothenate kinases: the same RT monomer fold creates dimers with distinct catalytic properties."; RL Structure 14:1251-1261(2006). CC -!- FUNCTION: Catalyzes the phosphorylation of pantothenate (Pan), the CC first step in CoA biosynthesis. Can also utilize CTP or GTP CC instead of ATP as a phosphoryl donor, albeit to a lesser extent. CC {ECO:0000269|PubMed:15795230, ECO:0000269|PubMed:16905099}. CC -!- CATALYTIC ACTIVITY: ATP + (R)-pantothenate = ADP + (R)-4'- CC phosphopantothenate. CC -!- COFACTOR: CC Name=NH4(+); Xref=ChEBI:CHEBI:28938; CC Evidence={ECO:0000269|PubMed:16905099}; CC Name=K(+); Xref=ChEBI:CHEBI:29103; CC Evidence={ECO:0000269|PubMed:16905099}; CC Note=Monovalent cations. Ammonium or potassium. CC {ECO:0000269|PubMed:16905099}; CC -!- ENZYME REGULATION: Not regulated by feedback inhibition by CoA and CC its thioesters as described for many other pantothenate kinases. CC Not inhibited by N-pentylpantothenamide (N5-Pan), and this CC compound can not act as a substrate either. CC {ECO:0000269|PubMed:15795230}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=101 uM for pantothenate {ECO:0000269|PubMed:15795230}; CC KM=9.6 mM for ATP {ECO:0000269|PubMed:15795230}; CC -!- PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from CC (R)-pantothenate: step 1/5. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- INTERACTION: CC O26009:tmk; NbExp=2; IntAct=EBI-528040, EBI-528054; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the type III pantothenate kinase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07916.1; -; Genomic_DNA. DR PIR; F64627; F64627. DR RefSeq; NP_207656.1; NC_000915.1. DR RefSeq; WP_001111589.1; NC_018939.1. DR ProteinModelPortal; O25533; -. DR DIP; DIP-3271N; -. DR IntAct; O25533; 13. DR MINT; MINT-175160; -. DR STRING; 85962.HP0862; -. DR PaxDb; O25533; -. DR PRIDE; O25533; -. DR DNASU; 899391; -. DR EnsemblBacteria; AAD07916; AAD07916; HP_0862. DR GeneID; 899391; -. DR KEGG; heo:C694_04415; -. DR KEGG; hpy:HP0862; -. DR PATRIC; 20593013; VBIHelPyl33062_0894. DR eggNOG; ENOG4108VHG; Bacteria. DR eggNOG; COG1521; LUCA. DR KO; K03525; -. DR OMA; FHLETDY; -. DR OrthoDB; EOG6DVJQ3; -. DR BioCyc; HPY:HP0862-MONOMER; -. DR SABIO-RK; O25533; -. DR UniPathway; UPA00241; UER00352. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004594; F:pantothenate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0015937; P:coenzyme A biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01274; Pantothen_kinase_3; 1. DR InterPro; IPR004619; Type_III_PanK. DR Pfam; PF03309; Pan_kinase; 1. DR TIGRFAMs; TIGR00671; baf; 1. PE 1: Evidence at protein level; KW ATP-binding; Coenzyme A biosynthesis; Complete proteome; Cytoplasm; KW Kinase; Metal-binding; Nucleotide-binding; Potassium; KW Reference proteome; Transferase. FT CHAIN 1 223 Type III pantothenate kinase. FT /FTId=PRO_0000267545. FT NP_BIND 17 24 ATP. {ECO:0000250}. FT REGION 85 88 Substrate binding. {ECO:0000250}. FT ACT_SITE 87 87 Proton acceptor. {ECO:0000255}. FT METAL 102 102 Monovalent cation. {ECO:0000255}. FT BINDING 81 81 Substrate. {ECO:0000250}. FT BINDING 105 105 ATP. {ECO:0000255}. FT BINDING 157 157 Substrate. {ECO:0000250}. FT MUTAGEN 17 17 D->N: 5% of wild-type activity. FT {ECO:0000269|PubMed:16855243}. FT MUTAGEN 87 87 D->E: 3% of wild-type activity. FT {ECO:0000269|PubMed:16855243}. FT MUTAGEN 87 87 D->N: 3% of wild-type activity. FT {ECO:0000269|PubMed:16855243}. FT MUTAGEN 102 102 D->N,E: 3% of wild-type activity. FT {ECO:0000269|PubMed:16855243}. SQ SEQUENCE 223 AA; 24655 MW; C1D13E8BEC1EB9AF CRC64; MPARQSFTDL KNLVLCDIGN TRIHFAQNYQ LFSSAKEDLK RLGIQKEIFY ISVNEENEKA LLNCYPNAKN IAGFFHLETD YVGLGIDRQM ACLAVNNGVV VDAGSAITID LIKEGKHLGG CILPGLAQYI HAYKKSAKIL EQPFKALDSL EVLPKSTRDA VNYGMVLSVI ACIQHLAKNQ KIYLCGGDAK YLSAFLPHSV CKERLVFDGM EIALKKAGIL ECK // ID COPA_HELPY Reviewed; 745 AA. AC P55989; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 13-APR-2016, entry version 122. DE RecName: Full=Copper-transporting ATPase; DE EC=3.6.3.4; GN Name=copA; OrderedLocusNames=HP_1072; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Probably involved in copper export. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + Cu(2+)(Side 1) = ADP + phosphate CC + Cu(2+)(Side 2). CC -!- SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. CC -!- SIMILARITY: Belongs to the cation transport ATPase (P-type) CC (TC 3.A.3) family. Type IB subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 HMA domain. {ECO:0000255|PROSITE- CC ProRule:PRU00280}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08117.1; -; Genomic_DNA. DR PIR; H64653; H64653. DR RefSeq; NP_207863.1; NC_000915.1. DR RefSeq; WP_000664941.1; NC_018939.1. DR ProteinModelPortal; P55989; -. DR DIP; DIP-3096N; -. DR IntAct; P55989; 14. DR MINT; MINT-159462; -. DR STRING; 85962.HP1072; -. DR PaxDb; P55989; -. DR PRIDE; P55989; -. DR EnsemblBacteria; AAD08117; AAD08117; HP_1072. DR GeneID; 899608; -. DR KEGG; heo:C694_05540; -. DR KEGG; hpy:HP1072; -. DR PATRIC; 20593483; VBIHelPyl33062_1121. DR eggNOG; ENOG4105C59; Bacteria. DR eggNOG; COG2217; LUCA. DR KO; K17686; -. DR OMA; IVEMIHN; -. DR OrthoDB; EOG6742RM; -. DR BioCyc; HPY:HP1072-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004008; F:copper-exporting ATPase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 2.70.150.10; -; 1. DR Gene3D; 3.40.1110.10; -; 1. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR023299; ATPase_P-typ_cyto_domN. DR InterPro; IPR018303; ATPase_P-typ_P_site. DR InterPro; IPR008250; ATPase_P-typ_transduc_dom_A. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR017969; Heavy-metal-associated_CS. DR InterPro; IPR006121; HMA_dom. DR InterPro; IPR027256; P-typ_ATPase_IB. DR InterPro; IPR001757; P_typ_ATPase. DR Pfam; PF00122; E1-E2_ATPase; 1. DR Pfam; PF00403; HMA; 1. DR SUPFAM; SSF55008; SSF55008; 1. DR SUPFAM; SSF56784; SSF56784; 2. DR SUPFAM; SSF81660; SSF81660; 1. DR TIGRFAMs; TIGR01525; ATPase-IB_hvy; 1. DR TIGRFAMs; TIGR01494; ATPase_P-type; 1. DR PROSITE; PS00154; ATPASE_E1_E2; 1. DR PROSITE; PS01047; HMA_1; 1. DR PROSITE; PS50846; HMA_2; 1. PE 3: Inferred from homology; KW ATP-binding; Cell membrane; Complete proteome; Copper; KW Copper transport; Hydrolase; Ion transport; Magnesium; Membrane; KW Metal-binding; Nucleotide-binding; Phosphoprotein; Reference proteome; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 745 Copper-transporting ATPase. FT /FTId=PRO_0000046170. FT TOPO_DOM 1 83 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 84 104 Helical. {ECO:0000255}. FT TOPO_DOM 105 124 Extracellular. {ECO:0000255}. FT TRANSMEM 125 144 Helical. {ECO:0000255}. FT TOPO_DOM 145 151 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 152 172 Helical. {ECO:0000255}. FT TOPO_DOM 173 194 Extracellular. {ECO:0000255}. FT TRANSMEM 195 215 Helical. {ECO:0000255}. FT TOPO_DOM 216 343 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 344 366 Helical. {ECO:0000255}. FT TOPO_DOM 367 379 Extracellular. {ECO:0000255}. FT TRANSMEM 380 397 Helical. {ECO:0000255}. FT TOPO_DOM 398 685 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 686 705 Helical. {ECO:0000255}. FT TOPO_DOM 706 716 Extracellular. {ECO:0000255}. FT TRANSMEM 717 735 Helical. {ECO:0000255}. FT TOPO_DOM 736 745 Cytoplasmic. {ECO:0000255}. FT DOMAIN 2 68 HMA. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT ACT_SITE 435 435 4-aspartylphosphate intermediate. FT {ECO:0000250}. FT METAL 12 12 Copper. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT METAL 15 15 Copper. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT METAL 631 631 Magnesium. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT METAL 635 635 Magnesium. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. SQ SEQUENCE 745 AA; 81853 MW; 855C10A737C072C9 CRC64; MKESFYIEGM TCTACSSGIE RSLGRKSFVK KIEVSLLNKS ANIEFDENQT NLDEIFKLIE KLGYSPKKAL TKEKKEFFSP NVKLALAVIF TLFVVYLSMG AMLSPSLLPE SLLAIDNHSN FLNACLQLIG ALIVMHLGRD FYIQGFKALW HRQPNMSSLI AIGTSAALIS SLWQLYLVYT NHYTDQWSYG HYYFESVCVI LMFVMVGKRI ENVSKDKALD AMQALMKNAP KTALKMQNNQ QIEVLVDSIV VGDILKVLPG SAIAVDGEII EGEGELDESM LSGEALPVYK KVGDKVFSGT FNSHTSFLMK ATQNNKNSTL SQIIEMIYNA QSSKAEISRL ADKVSSVFVP SVIAISILAF VVWLIIAPKP DFWWNFGIAL EVFVSVLVIS CPCALGLATP MSILVANQKA SSLGLFFKDA KSLEKARLVN TIVFDKTGTL TNGKPVVKSV HSKIELLELL SLALSIEKSS EHVIAKGIVE YAKEHNAPLK EMSGVKVKTG FGISAKTDYQ GTKEIIKVGN SEFFNPINTL EIKENGILVF VGRAISEKED ELLGAFVLED LPKKGVKEHI AQIKNLGINT FLLSGDNREN VQKCAFELGI DGYISNAKPQ DKLNKIKELK EKGQIVMMVG DGLNDAPSLA MSDVAVVMAK GSDVSVQAAD IVSFNNDIKS VYSAIKLSQA TIKNIKENLF WAFCYNSVFI PLACGVLYKA NLMLSPAIAG LAMSLSSVSV VLNSQRLRNF KIKDH // ID COPP_HELPY Reviewed; 66 AA. AC Q48271; O07682; Q48257; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 103. DE RecName: Full=COP-associated protein; DE AltName: Full=Copper ion-binding protein; GN Name=copP; OrderedLocusNames=HP_1073; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=A68; RX PubMed=8550601; DOI=10.1074/jbc.271.1.446; RA Melchers K., Weitzenegger T., Buhmann A., Steinhilber W., Sachs G., RA Schaefer K.P.; RT "Cloning and membrane topology of a P type ATPase from Helicobacter RT pylori."; RL J. Biol. Chem. 271:446-457(1996). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=7752900; DOI=10.1111/j.1365-2958.1995.tb02224.x; RA Ge Z., Hiratsuka K., Taylor D.E.; RT "Nucleotide sequence and mutational analysis indicate that two RT Helicobacter pylori genes encode a P-type ATPase and a cation-binding RT protein associated with copper transport."; RL Mol. Microbiol. 15:97-106(1995). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [5] RP STRUCTURE BY NMR IN COMPLEX WITH COPPER IONS, AND DISULFIDE BOND. RX PubMed=18214986; DOI=10.1002/prot.21957; RA Park S.J., Jung Y.-S., Kim J.-S., Seo M.-D., Lee B.J.; RT "Structural insight into the distinct properties of copper transport RT by the Helicobacter pylori CopP protein."; RL Proteins 71:1007-1019(2008). CC -!- FUNCTION: Part of a cation-transporting system which is associated CC with copper export out of the H.pylori cells. CC -!- INTERACTION: CC P56039:rplN; NbExp=3; IntAct=EBI-7497456, EBI-7497678; CC -!- MISCELLANEOUS: Copper (2+) binding can oxidyze the Cys residues at CC the metal-binding site, leading to the formation of a disulfide CC bond. CC -!- SIMILARITY: Contains 1 HMA domain. {ECO:0000255|PROSITE- CC ProRule:PRU00280}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U59625; AAB05476.1; -; Genomic_DNA. DR EMBL; U97567; AAB66381.1; -; Genomic_DNA. DR EMBL; L33259; AAB67321.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08120.1; -; Genomic_DNA. DR PIR; A64654; A64654. DR RefSeq; NP_207864.1; NC_000915.1. DR RefSeq; WP_000648265.1; NC_018939.1. DR PDB; 1YG0; NMR; -; A=1-66. DR PDBsum; 1YG0; -. DR ProteinModelPortal; Q48271; -. DR SMR; Q48271; 1-66. DR DIP; DIP-3638N; -. DR IntAct; Q48271; 4. DR MINT; MINT-161359; -. DR STRING; 85962.HP1073; -. DR PaxDb; Q48271; -. DR PRIDE; Q48271; -. DR EnsemblBacteria; AAD08120; AAD08120; HP_1073. DR GeneID; 899609; -. DR KEGG; heo:C694_05545; -. DR KEGG; hpy:HP1073; -. DR PATRIC; 20593485; VBIHelPyl33062_1122. DR eggNOG; COG2608; LUCA. DR OMA; MKVTFQV; -. DR OrthoDB; EOG6742RM; -. DR BioCyc; HPY:HP1073-MONOMER; -. DR EvolutionaryTrace; Q48271; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0006825; P:copper ion transport; IEA:InterPro. DR InterPro; IPR000428; Cu-bd. DR InterPro; IPR017969; Heavy-metal-associated_CS. DR InterPro; IPR006122; HMA_Cu_ion-bd. DR InterPro; IPR006121; HMA_dom. DR Pfam; PF00403; HMA; 1. DR PRINTS; PR00944; CUEXPORT. DR SUPFAM; SSF55008; SSF55008; 1. DR TIGRFAMs; TIGR00003; TIGR00003; 1. DR PROSITE; PS01047; HMA_1; 1. DR PROSITE; PS50846; HMA_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Copper; Disulfide bond; KW Metal-binding; Reference proteome. FT CHAIN 1 66 COP-associated protein. FT /FTId=PRO_0000079246. FT DOMAIN 2 66 HMA. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT METAL 12 12 Copper. FT METAL 15 15 Copper. FT DISULFID 12 15 Alternate. {ECO:0000269|PubMed:18214986}. FT VARIANT 3 3 A -> V (in strain: A68, NCTC 11638 and FT NCTC 11639). FT VARIANT 13 13 N -> D (in strain: NCTC 11638). FT VARIANT 13 13 N -> S (in strain: NCTC 11639). FT VARIANT 34 34 V -> A (in strain: A68, NCTC 11638 and FT NCTC 11639). FT VARIANT 35 35 S -> N (in strain: NCTC 11639). FT VARIANT 66 66 V -> I (in strain: A68, NCTC 11638 and FT NCTC 11639). FT STRAND 2 5 {ECO:0000244|PDB:1YG0}. FT HELIX 14 23 {ECO:0000244|PDB:1YG0}. FT STRAND 26 35 {ECO:0000244|PDB:1YG0}. FT TURN 36 39 {ECO:0000244|PDB:1YG0}. FT STRAND 40 45 {ECO:0000244|PDB:1YG0}. FT HELIX 51 61 {ECO:0000244|PDB:1YG0}. SQ SEQUENCE 66 AA; 7196 MW; 353E2C3D392816F1 CRC64; MKATFQVPSI TCNHCVDKIE KFVGEIEGVS FIDVSVEKKS VVVEFDAPAT QDLIKEALLD AGQEVV // ID CMOA_HELPY Reviewed; 243 AA. AC O25150; DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE RecName: Full=Carboxy-S-adenosyl-L-methionine synthase {ECO:0000255|HAMAP-Rule:MF_01589}; DE Short=Cx-SAM synthase {ECO:0000255|HAMAP-Rule:MF_01589}; DE EC=2.1.3.- {ECO:0000255|HAMAP-Rule:MF_01589}; GN Name=cmoA {ECO:0000255|HAMAP-Rule:MF_01589}; GN OrderedLocusNames=HP_0388; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of S-adenosyl-L-methionine CC (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). CC {ECO:0000255|HAMAP-Rule:MF_01589}. CC -!- CATALYTIC ACTIVITY: Prephenate + S-adenosyl-L-methionine = CC phenylpyruvate + carboxy-S-adenosyl-L-methionine + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_01589}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01589}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. Cx-SAM synthase family. CC {ECO:0000255|HAMAP-Rule:MF_01589}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07453.1; -; Genomic_DNA. DR PIR; D64568; D64568. DR RefSeq; NP_207186.1; NC_000915.1. DR RefSeq; WP_000655545.1; NC_018939.1. DR ProteinModelPortal; O25150; -. DR STRING; 85962.HP0388; -. DR PaxDb; O25150; -. DR PRIDE; O25150; -. DR EnsemblBacteria; AAD07453; AAD07453; HP_0388. DR GeneID; 898872; -. DR KEGG; heo:C694_01970; -. DR KEGG; hpy:HP0388; -. DR PATRIC; 20592015; VBIHelPyl33062_0401. DR eggNOG; ENOG4105DA6; Bacteria. DR eggNOG; COG0500; LUCA. DR KO; K15256; -. DR OMA; MIELYYL; -. DR OrthoDB; EOG628F44; -. DR BioCyc; HPY:HP0388-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016300; F:tRNA (uracil) methyltransferase activity; IEA:InterPro. DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_01589; Cx_SAM_synthase; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR005271; tRNA_cmo5U34_MeTrfase. DR PIRSF; PIRSF006325; MeTrfase_bac; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00740; TIGR00740; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; S-adenosyl-L-methionine; KW Transferase. FT CHAIN 1 243 Carboxy-S-adenosyl-L-methionine synthase. FT /FTId=PRO_0000314340. FT REGION 68 70 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01589}. FT REGION 92 93 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01589}. FT BINDING 35 35 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01589}. FT BINDING 199 199 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01589}. SQ SEQUENCE 243 AA; 28482 MW; 00EE94F7E3300D98 CRC64; MKDTLFNESL NKRFCFDEKV AHVFDDMLER SIPYYHEMLN LGAYFIAQNL KENIYPKSLP KPLIYDLGCS TGNFFIALNR QIQQEIELVG IDNSMPMLKK AQEKLKDFNN ARFECMDFLE VEFKEASAFS LLFVLQFVRP MQREVLLKKI YNSLALNGVL LVGEKIMSED RILDKQMIEL YYLYKQNQGY SHNEIAFKRE ALENVLVPYS LKENVALLES VGFKHVEALF KWVNFTLLVA RKT // ID COAD_HELPY Reviewed; 157 AA. AC O26010; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=Phosphopantetheine adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; DE EC=2.7.7.3 {ECO:0000255|HAMAP-Rule:MF_00151}; DE AltName: Full=Dephospho-CoA pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00151}; DE AltName: Full=Pantetheine-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; DE Short=PPAT {ECO:0000255|HAMAP-Rule:MF_00151}; GN Name=coaD {ECO:0000255|HAMAP-Rule:MF_00151}; Synonyms=kdtB; GN OrderedLocusNames=HP_1475; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Reversibly transfers an adenylyl group from ATP to 4'- CC phosphopantetheine, yielding dephospho-CoA (dPCoA) and CC pyrophosphate. {ECO:0000255|HAMAP-Rule:MF_00151}. CC -!- CATALYTIC ACTIVITY: ATP + pantetheine 4'-phosphate = diphosphate + CC 3'-dephospho-CoA. {ECO:0000255|HAMAP-Rule:MF_00151}. CC -!- PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from CC (R)-pantothenate: step 4/5. {ECO:0000255|HAMAP-Rule:MF_00151}. CC -!- SUBUNIT: Homohexamer. {ECO:0000255|HAMAP-Rule:MF_00151}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00151}. CC -!- SIMILARITY: Belongs to the bacterial CoaD family. CC {ECO:0000255|HAMAP-Rule:MF_00151}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08514.1; -; Genomic_DNA. DR PIR; C64704; C64704. DR RefSeq; NP_208266.1; NC_000915.1. DR RefSeq; WP_001169234.1; NC_018939.1. DR PDB; 3NV7; X-ray; 1.75 A; A=1-157. DR PDB; 3OTW; X-ray; 1.80 A; A/B/C/D/E/F=1-157. DR PDBsum; 3NV7; -. DR PDBsum; 3OTW; -. DR ProteinModelPortal; O26010; -. DR STRING; 85962.HP1475; -. DR PaxDb; O26010; -. DR PRIDE; O26010; -. DR EnsemblBacteria; AAD08514; AAD08514; HP_1475. DR GeneID; 899817; -. DR KEGG; heo:C694_07635; -. DR KEGG; hpy:HP1475; -. DR PATRIC; 20594361; VBIHelPyl33062_1549. DR eggNOG; ENOG4108ZEF; Bacteria. DR eggNOG; COG0669; LUCA. DR KO; K00954; -. DR OMA; YELQIAH; -. DR OrthoDB; EOG6MH5J7; -. DR BioCyc; HPY:HP1475-MONOMER; -. DR BRENDA; 2.7.7.3; 2604. DR UniPathway; UPA00241; UER00355. DR EvolutionaryTrace; O26010; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004595; F:pantetheine-phosphate adenylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0015937; P:coenzyme A biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00151; PPAT_bact; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR001980; LPS_biosynth. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR PRINTS; PR01020; LPSBIOSNTHSS. DR TIGRFAMs; TIGR01510; coaD_prev_kdtB; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Coenzyme A biosynthesis; Complete proteome; KW Cytoplasm; Nucleotide-binding; Nucleotidyltransferase; KW Reference proteome; Transferase. FT CHAIN 1 157 Phosphopantetheine adenylyltransferase. FT /FTId=PRO_0000156217. FT STRAND 4 9 {ECO:0000244|PDB:3NV7}. FT HELIX 16 26 {ECO:0000244|PDB:3NV7}. FT STRAND 29 37 {ECO:0000244|PDB:3NV7}. FT HELIX 40 42 {ECO:0000244|PDB:3NV7}. FT HELIX 48 59 {ECO:0000244|PDB:3NV7}. FT STRAND 65 70 {ECO:0000244|PDB:3NV7}. FT HELIX 74 80 {ECO:0000244|PDB:3NV7}. FT STRAND 85 89 {ECO:0000244|PDB:3OTW}. FT HELIX 96 108 {ECO:0000244|PDB:3NV7}. FT STRAND 114 118 {ECO:0000244|PDB:3OTW}. FT HELIX 122 125 {ECO:0000244|PDB:3NV7}. FT HELIX 129 137 {ECO:0000244|PDB:3NV7}. FT TURN 143 145 {ECO:0000244|PDB:3NV7}. FT TURN 148 150 {ECO:0000244|PDB:3NV7}. FT HELIX 151 154 {ECO:0000244|PDB:3NV7}. SQ SEQUENCE 157 AA; 17668 MW; 4250742EAB58E097 CRC64; MQKIGIYPGT FDPVTNGHID IIHRSSELFE KLIVAVAHSS AKNPMFSLDE RLKMIQLATK SFKNVECVAF EGLLANLAKE YHCKVLVRGL RVVSDFEYEL QMGYANKSLN HELETLYFMP TLQNAFISSS IVRSIIAHKG DASHLVPKEI YPLISKA // ID CORA_HELPY Reviewed; 318 AA. AC O25901; DT 30-MAY-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 89. DE RecName: Full=Magnesium transport protein CorA; GN Name=corA; OrderedLocusNames=HP_1344; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, AND SUBCELLULAR LOCATION. RC STRAIN=ATCC 700392 / 26695; RX PubMed=12065537; DOI=10.1128/IAI.70.7.3930-3934.2002; RA Pfeiffer J., Guhl J., Waidner B., Kist M., Bereswill S.; RT "Magnesium uptake by CorA is essential for viability of the gastric RT pathogen Helicobacter pylori."; RL Infect. Immun. 70:3930-3934(2002). CC -!- FUNCTION: Mediates influx of magnesium ions. Can also mediate CC cobalt and nickel uptake. Plays a key role in the adaptation to CC the low magnesium conditions predominant in the gastric CC environment (PubMed:12065537). Alternates between open and closed CC states. Activated by low cytoplasmic Mg(2+) levels. Inactive when CC cytoplasmic Mg(2+) levels are high (By similarity). CC {ECO:0000250|UniProtKB:Q9WZ31, ECO:0000269|PubMed:12065537}. CC -!- SUBUNIT: Homopentamer. In the absence of Mg(2+), interactions CC between subunits are weakened, and dimers, trimers and tetramers CC can be observed in vitro (By similarity). CC {ECO:0000250|UniProtKB:Q9WZ31}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000305|PubMed:12065537}; Multi-pass membrane protein CC {ECO:0000250|UniProtKB:Q9WZ31}. CC -!- DOMAIN: The central ion permeation pathway is formed by the first CC transmembrane domain from each of the five subunits. Mg(2+) CC binding strengthens interactions between subunits and leads to the CC formation of a symmetrical homopentamer surrounding a closed ion CC permeation pathway. Co(2+) binding also induces a conformation CC change. Low Mg(2+) concentrations trigger both a conformation CC change within each subunit and a loosening of the interactions CC between subunits. This results in an open ion conduction pathway. CC In addition, this results in a less symmetrical shape of the whole CC complex. {ECO:0000250|UniProtKB:Q9WZ31}. CC -!- SIMILARITY: Belongs to the CorA metal ion transporter (MIT) CC (TC 1.A.35) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08385.1; -; Genomic_DNA. DR PIR; H64687; H64687. DR RefSeq; NP_208136.1; NC_000915.1. DR RefSeq; WP_000248522.1; NC_018939.1. DR ProteinModelPortal; O25901; -. DR IntAct; O25901; 1. DR MINT; MINT-4059380; -. DR STRING; 85962.HP1344; -. DR PaxDb; O25901; -. DR PRIDE; O25901; -. DR EnsemblBacteria; AAD08385; AAD08385; HP_1344. DR GeneID; 900359; -. DR KEGG; heo:C694_06935; -. DR KEGG; hpy:HP1344; -. DR PATRIC; 20594073; VBIHelPyl33062_1407. DR eggNOG; ENOG4105D7N; Bacteria. DR eggNOG; COG0598; LUCA. DR KO; K03284; -. DR OMA; DLYKPDE; -. DR OrthoDB; EOG6MD91T; -. DR BioCyc; HPY:HP1344-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015087; F:cobalt ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015095; F:magnesium ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015693; P:magnesium ion transport; IEA:InterPro. DR InterPro; IPR004488; Mg/Co-transport_prot_CorA. DR InterPro; IPR002523; MgTranspt_CorA/ZnTranspt_ZntB. DR Pfam; PF01544; CorA; 1. DR TIGRFAMs; TIGR00383; corA; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Cobalt; Complete proteome; KW Ion transport; Magnesium; Membrane; Nickel; Reference proteome; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 318 Magnesium transport protein CorA. FT /FTId=PRO_0000239048. FT TRANSMEM 260 280 Helical. {ECO:0000255}. FT TRANSMEM 292 312 Helical. {ECO:0000255}. FT MOTIF 279 281 Probable selectivity filter. FT {ECO:0000250|UniProtKB:Q9WZ31}. FT SITE 255 255 Essential for ion permeation. FT {ECO:0000250|UniProtKB:Q9WZ31}. SQ SEQUENCE 318 AA; 37136 MW; 06CC4966F02C0CC5 CRC64; MVNVFFKQQK FVIKKRFNDF NGFDIEENEV LWFELINPTP NELATLSQEY AIHYNTDHSQ RVSSVTKYWE DSSSVTINAF FTNQDENETF HTEMATFILS NNILFTIYYG TLEIFDSIQK KVLASPKKFE DGFDILTKIF EVYFEKGVEC LEWINKQTSL LRKNIIFKET STHDDILVRL SNLQEFNVTL RDSFFDKRRI ITALLRSNKV DSDTKNNLNI ILTDFSSLVE STTVNLNSLD NIQNLFASQV NVEQNKIIKL FTVATMAMMP PTLIGTIYGM NFKFMPELEW QYGYLFALIV MAISTILPVI YFKKKGWL // ID CLPS_HELPY Reviewed; 91 AA. AC P56066; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=ATP-dependent Clp protease adapter protein ClpS {ECO:0000255|HAMAP-Rule:MF_00302}; GN Name=clpS {ECO:0000255|HAMAP-Rule:MF_00302}; GN OrderedLocusNames=HP_0032; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the modulation of the specificity of the CC ClpAP-mediated ATP-dependent protein degradation. CC {ECO:0000255|HAMAP-Rule:MF_00302}. CC -!- SUBUNIT: Binds to the N-terminal domain of the chaperone ClpA. CC {ECO:0000255|HAMAP-Rule:MF_00302}. CC -!- SIMILARITY: Belongs to the ClpS family. {ECO:0000255|HAMAP- CC Rule:MF_00302}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07101.1; -; Genomic_DNA. DR PIR; H64523; H64523. DR RefSeq; NP_206834.1; NC_000915.1. DR RefSeq; WP_000784920.1; NC_018939.1. DR ProteinModelPortal; P56066; -. DR DIP; DIP-3107N; -. DR IntAct; P56066; 4. DR MINT; MINT-183175; -. DR STRING; 85962.HP0032; -. DR PaxDb; P56066; -. DR PRIDE; P56066; -. DR EnsemblBacteria; AAD07101; AAD07101; HP_0032. DR GeneID; 899136; -. DR KEGG; heo:C694_00150; -. DR KEGG; hpy:HP0032; -. DR PATRIC; 20591263; VBIHelPyl33062_0033. DR eggNOG; ENOG4105KAE; Bacteria. DR eggNOG; COG2127; LUCA. DR KO; K06891; -. DR OMA; HRDGCGV; -. DR OrthoDB; EOG67Q9F2; -. DR BioCyc; HPY:HP0032-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030163; P:protein catabolic process; IEA:InterPro. DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1390.10; -; 1. DR HAMAP; MF_00302; ClpS; 1. DR InterPro; IPR022935; ClpS. DR InterPro; IPR003769; ClpS_core. DR InterPro; IPR014719; Ribosomal_L7/12_C/ClpS-like. DR Pfam; PF02617; ClpS; 1. DR SUPFAM; SSF54736; SSF54736; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 91 ATP-dependent Clp protease adapter FT protein ClpS. FT /FTId=PRO_0000215715. SQ SEQUENCE 91 AA; 10344 MW; E1B40519E36F3C95 CRC64; MKMYNIPTPT MAQVIMVDDP ITTTEFVISA LRDFFDKSLE EAKALTSSIH RDGEGVCGVY PYDIARHRAA WVRDKAKALE FPLKLLVEEI K // ID COAE_HELPY Reviewed; 196 AA. AC O25502; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Dephospho-CoA kinase; DE EC=2.7.1.24; DE AltName: Full=Dephosphocoenzyme A kinase; GN Name=coaE; OrderedLocusNames=HP_0831; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of the 3'-hydroxyl group CC of dephosphocoenzyme A to form coenzyme A. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + 3'-dephospho-CoA = ADP + CoA. CC -!- PATHWAY: Cofactor biosynthesis; coenzyme A biosynthesis; CoA from CC (R)-pantothenate: step 5/5. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the CoaE family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 DPCK (dephospho-CoA kinase) domain. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07881.1; -; Genomic_DNA. DR PIR; G64623; G64623. DR RefSeq; NP_207624.1; NC_000915.1. DR RefSeq; WP_000243282.1; NC_018939.1. DR ProteinModelPortal; O25502; -. DR IntAct; O25502; 1. DR STRING; 85962.HP0831; -. DR PaxDb; O25502; -. DR PRIDE; O25502; -. DR EnsemblBacteria; AAD07881; AAD07881; HP_0831. DR GeneID; 898770; -. DR KEGG; heo:C694_04260; -. DR KEGG; hpy:HP0831; -. DR PATRIC; 20592953; VBIHelPyl33062_0865. DR eggNOG; ENOG4108ZQD; Bacteria. DR eggNOG; COG0237; LUCA. DR KO; K00859; -. DR OMA; DSIPFSF; -. DR OrthoDB; EOG6HTP3H; -. DR BioCyc; HPY:HP0831-MONOMER; -. DR UniPathway; UPA00241; UER00356. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004140; F:dephospho-CoA kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0015937; P:coenzyme A biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00376; Dephospho_CoA_kinase; 1. DR InterPro; IPR001977; Depp_CoAkinase. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01121; CoaE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00152; TIGR00152; 1. DR PROSITE; PS51219; DPCK; 1. PE 3: Inferred from homology; KW ATP-binding; Coenzyme A biosynthesis; Complete proteome; Cytoplasm; KW Kinase; Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 196 Dephospho-CoA kinase. FT /FTId=PRO_0000172949. FT DOMAIN 6 196 DPCK. FT NP_BIND 11 18 ATP. {ECO:0000255}. SQ SEQUENCE 196 AA; 22663 MW; FBA1CD16F8174A9F CRC64; MVLKNAIALT GGIGTGKSTT IKILESQGYK ILDADKIAHQ LLQEHRFKIA QHFGSDILEK DILNRKKLGA IVFQDAHELK WLEDFLHPLI REHMLKKAYE LEKNHQAYFL DIPLFFEVGG KKCYPVSKVV LVYASRALQI ERLLERDKLK EAEILQRLAC QMDIEQKRAM SDYIIDNSSS LKDLNKQVER FLKTLL // ID CRCB_HELPY Reviewed; 130 AA. AC O25823; DT 26-SEP-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; GN Name=crcB {ECO:0000255|HAMAP-Rule:MF_00454}; GN OrderedLocusNames=HP_1225; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Important for reducing fluoride concentration in the CC cell, thus reducing its toxicity. {ECO:0000255|HAMAP- CC Rule:MF_00454}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00454}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00454}. CC -!- SIMILARITY: Belongs to the CrcB (TC 9.B.71) family. CC {ECO:0000255|HAMAP-Rule:MF_00454}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08270.1; -; Genomic_DNA. DR PIR; A64673; A64673. DR RefSeq; NP_208017.1; NC_000915.1. DR RefSeq; WP_001011988.1; NC_018939.1. DR ProteinModelPortal; O25823; -. DR STRING; 85962.HP1225; -. DR PaxDb; O25823; -. DR PRIDE; O25823; -. DR EnsemblBacteria; AAD08270; AAD08270; HP_1225. DR GeneID; 900228; -. DR KEGG; heo:C694_06325; -. DR KEGG; hpy:HP1225; -. DR PATRIC; 20593821; VBIHelPyl33062_1281. DR eggNOG; ENOG4105WMR; Bacteria. DR eggNOG; COG0239; LUCA. DR KO; K06199; -. DR OMA; SLRYFVG; -. DR OrthoDB; EOG6091KP; -. DR BioCyc; HPY:HP1225-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0015103; F:inorganic anion transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00454; CrcB; 1. DR InterPro; IPR003691; CrcB. DR Pfam; PF02537; CRCB; 1. DR TIGRFAMs; TIGR00494; crcB; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 130 Putative fluoride ion transporter CrcB. FT /FTId=PRO_0000110109. FT TRANSMEM 3 23 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. FT TRANSMEM 39 59 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. FT TRANSMEM 67 87 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. FT TRANSMEM 102 122 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. SQ SEQUENCE 130 AA; 14093 MW; E1E6E5457EFA9674 CRC64; MNFVFLWAAL GGAIGSSLRY FVGKMMPSKF LMFESFPLGT FSVNIIGCFV IGFMGHLAVK KVFGDDFGIF FVTGVLGGFT TFSSYGLDTL KLLQKSQYIE AVSYALGTNI LGLTGVAIGW FLAKNFVGIH // ID CSRA_HELPY Reviewed; 76 AA. AC O25983; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 78. DE RecName: Full=Carbon storage regulator homolog; GN Name=csrA; OrderedLocusNames=HP_1442; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Could accelerate the degradation of some genes CC transcripts potentially through selective RNA binding. CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the CsrA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08480.1; -; Genomic_DNA. DR PIR; B64700; B64700. DR RefSeq; NP_208233.1; NC_000915.1. DR RefSeq; WP_000906447.1; NC_018939.1. DR ProteinModelPortal; O25983; -. DR IntAct; O25983; 11. DR STRING; 85962.HP1442; -. DR PaxDb; O25983; -. DR PRIDE; O25983; -. DR DNASU; 899852; -. DR EnsemblBacteria; AAD08480; AAD08480; HP_1442. DR GeneID; 899852; -. DR KEGG; heo:C694_07470; -. DR KEGG; hpy:HP1442; -. DR PATRIC; 20594291; VBIHelPyl33062_1514. DR eggNOG; ENOG41085EF; Bacteria. DR eggNOG; COG1551; LUCA. DR KO; K03563; -. DR OMA; IEKDCVK; -. DR OrthoDB; EOG6DC6PM; -. DR BioCyc; HPY:HP1442-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006109; P:regulation of carbohydrate metabolic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00167; CsrA; 1. DR InterPro; IPR003751; CsrA. DR Pfam; PF02599; CsrA; 1. DR ProDom; PD009007; CsrA; 1. DR TIGRFAMs; TIGR00202; csrA; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; RNA-binding. FT CHAIN 1 76 Carbon storage regulator homolog. FT /FTId=PRO_0000177070. SQ SEQUENCE 76 AA; 8440 MW; D51A74FFD6139321 CRC64; MLILSRKVNE GIVIDDNIHI KVISIDRGSV RLGFEAPEST LILRAELKEA IVSENQKASV CVDESLLENI KKVIKP // ID CY553_HELPY Reviewed; 96 AA. AC O25825; DT 23-JAN-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=Cytochrome c-553; DE AltName: Full=Cytochrome c553; DE Flags: Precursor; GN OrderedLocusNames=HP_1227; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP PROTEIN SEQUENCE OF 20-28, AND CHARACTERIZATION. RX PubMed=10965034; DOI=10.1093/oxfordjournals.jbchem.a022763; RA Koyanagi S., Nagata K., Tamura T., Tsukita S., Sone N.; RT "Purification and characterization of cytochrome c-553 from RT Helicobacter pylori."; RL J. Biochem. 128:371-375(2000). CC -!- FUNCTION: Natural electron acceptor for a formate dehydrogenase. CC -!- SUBCELLULAR LOCATION: Periplasm. CC -!- PTM: Binds 1 heme group per subunit. CC -!- SIMILARITY: Belongs to the cytochrome c family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08272.1; -; Genomic_DNA. DR PIR; C64673; C64673. DR RefSeq; NP_208019.1; NC_000915.1. DR RefSeq; WP_000755879.1; NC_018939.1. DR ProteinModelPortal; O25825; -. DR STRING; 85962.HP1227; -. DR PaxDb; O25825; -. DR PRIDE; O25825; -. DR EnsemblBacteria; AAD08272; AAD08272; HP_1227. DR GeneID; 900183; -. DR KEGG; heo:C694_06335; -. DR KEGG; hpy:HP1227; -. DR PATRIC; 20593825; VBIHelPyl33062_1283. DR eggNOG; COG2863; LUCA. DR OMA; TALKGYK; -. DR OrthoDB; EOG6PGK4H; -. DR BioCyc; HPY:HP1227-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0055114; P:oxidation-reduction process; IEA:UniProtKB-KW. DR Gene3D; 1.10.760.10; -; 1. DR InterPro; IPR009056; Cyt_c-like_dom. DR InterPro; IPR008168; Cyt_C_IC. DR Pfam; PF13442; Cytochrome_CBB3; 1. DR PRINTS; PR00605; CYTCHROMECIC. DR SUPFAM; SSF46626; SSF46626; 1. DR PROSITE; PS51007; CYTC; 1. PE 1: Evidence at protein level; KW Complete proteome; Direct protein sequencing; Electron transport; KW Heme; Iron; Metal-binding; Periplasm; Reference proteome; Signal; KW Transport. FT SIGNAL 1 19 {ECO:0000269|PubMed:10965034}. FT CHAIN 20 96 Cytochrome c-553. FT /FTId=PRO_0000006537. FT METAL 33 33 Iron (heme axial ligand). FT {ECO:0000255|PROSITE-ProRule:PRU00433}. FT METAL 73 73 Iron (heme axial ligand). FT {ECO:0000255|PROSITE-ProRule:PRU00433}. FT BINDING 29 29 Heme (covalent). FT BINDING 32 32 Heme (covalent). SQ SEQUENCE 96 AA; 10346 MW; C6EEFEA2AE5B8428 CRC64; MKKVIMALGV LAFANALMAT DVKALAKSCA ACHGVKFEKK ALGKSKIVNM MSEAEIEKDL MDFKSGANKN PIMSAQAKKL SDEDIKALAK YIPTLK // ID CYNT_HELPY Reviewed; 221 AA. AC O24855; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 90. DE RecName: Full=Carbonic anhydrase; DE EC=4.2.1.1; DE AltName: Full=Carbonate dehydratase; GN Name=cynT; OrderedLocusNames=HP_0004; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: H(2)CO(3) = CO(2) + H(2)O. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- SIMILARITY: Belongs to the beta-class carbonic anhydrase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07077.1; -; Genomic_DNA. DR PIR; D64520; D64520. DR RefSeq; NP_206806.1; NC_000915.1. DR RefSeq; WP_000642977.1; NC_018939.1. DR ProteinModelPortal; O24855; -. DR STRING; 85962.HP0004; -. DR BindingDB; O24855; -. DR ChEMBL; CHEMBL4211; -. DR PaxDb; O24855; -. DR PRIDE; O24855; -. DR EnsemblBacteria; AAD07077; AAD07077; HP_0004. DR GeneID; 898779; -. DR KEGG; heo:C694_00020; -. DR KEGG; hpy:HP0004; -. DR PATRIC; 20591195; VBIHelPyl33062_0004. DR eggNOG; COG0288; LUCA. DR KO; K01673; -. DR OMA; IHDETTK; -. DR OrthoDB; EOG61CKZ9; -. DR BioCyc; HPY:HP0004-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004089; F:carbonate dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0015976; P:carbon utilization; IEA:InterPro. DR Gene3D; 3.40.1050.10; -; 1. DR InterPro; IPR001765; Carbonic_anhydrase. DR InterPro; IPR015892; Carbonic_anhydrase_CS. DR PANTHER; PTHR11002; PTHR11002; 1. DR Pfam; PF00484; Pro_CA; 1. DR SMART; SM00947; Pro_CA; 1. DR SUPFAM; SSF53056; SSF53056; 1. DR PROSITE; PS00705; PROK_CO2_ANHYDRASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Metal-binding; Reference proteome; Zinc. FT CHAIN 1 221 Carbonic anhydrase. FT /FTId=PRO_0000077461. FT METAL 38 38 Zinc. {ECO:0000250}. FT METAL 40 40 Zinc. {ECO:0000250}. FT METAL 99 99 Zinc. {ECO:0000250}. FT METAL 102 102 Zinc. {ECO:0000250}. SQ SEQUENCE 221 AA; 25515 MW; 4CE5E051042C012D CRC64; MKAFLGALEF QENEYEELKE LYESLKTKQK PHTLFISCVD SRVVPNLITG TKPGELYVIC NMGNVNPPKT SYKESLSTIA SIEYAIAHVG VQNLIICGHS DCGACGSVHL IHDETTKAKT PYIANWIQFL EPVKEELKNH PQFSNHFAKR SWLTERLNAR LQLNNLLSYD FIQEKASKNE LKIFGWHYII ETGRIYNYNF ESHFFEPIGE TIKQRKSHEN F // ID DAPB_HELPY Reviewed; 254 AA. AC P94844; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 09-DEC-2015, entry version 108. DE RecName: Full=4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; DE Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102}; DE EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102}; GN Name=dapB {ECO:0000255|HAMAP-Rule:MF_00102}; GN OrderedLocusNames=HP_0510; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RA Clairoux N., Boissinot M.; RT "Sequence of the dihydrodipicolinate reductase gene (dapB) from RT Helicobacter pylori and complementation in Escherichia coli."; RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of 4-hydroxy- CC tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. CC {ECO:0000255|HAMAP-Rule:MF_00102}. CC -!- CATALYTIC ACTIVITY: (S)-2,3,4,5-tetrahydropyridine-2,6- CC dicarboxylate + NAD(P)(+) + H(2)O = (2S,4S)-4-hydroxy-2,3,4,5- CC tetrahydrodipicolinate + NAD(P)H. {ECO:0000255|HAMAP- CC Rule:MF_00102}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4. CC {ECO:0000255|HAMAP-Rule:MF_00102}. CC -!- INTERACTION: CC O25114:HP_0347; NbExp=3; IntAct=EBI-7497752, EBI-7497815; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00102}. CC -!- SIMILARITY: Belongs to the DapB family. {ECO:0000255|HAMAP- CC Rule:MF_00102}. CC -!- CAUTION: Was originally thought to be a dihydrodipicolinate CC reductase (DHDPR), catalyzing the conversion of CC dihydrodipicolinate to tetrahydrodipicolinate. However, it was CC shown in E.coli that the substrate of the enzymatic reaction is CC not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy- CC 2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by CC the DapA-catalyzed reaction. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U75328; AAB39718.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07574.1; -; Genomic_DNA. DR PIR; F64583; F64583. DR RefSeq; NP_207307.1; NC_000915.1. DR RefSeq; WP_000690507.1; NC_018939.1. DR ProteinModelPortal; P94844; -. DR DIP; DIP-3440N; -. DR IntAct; P94844; 1. DR MINT; MINT-169897; -. DR STRING; 85962.HP0510; -. DR PaxDb; P94844; -. DR PRIDE; P94844; -. DR EnsemblBacteria; AAD07574; AAD07574; HP_0510. DR GeneID; 900344; -. DR KEGG; heo:C694_02620; -. DR KEGG; hpy:HP0510; -. DR PATRIC; 20592295; VBIHelPyl33062_0536. DR eggNOG; ENOG4105DUK; Bacteria. DR eggNOG; COG0289; LUCA. DR KO; K00215; -. DR OMA; HNMSIGI; -. DR OrthoDB; EOG6SV5DS; -. DR BioCyc; HPY:HP0510-MONOMER; -. DR UniPathway; UPA00034; UER00018. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008839; F:4-hydroxy-tetrahydrodipicolinate reductase; IEA:UniProtKB-EC. DR GO; GO:0051287; F:NAD binding; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016726; F:oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor; IEA:UniProtKB-HAMAP. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00102; DapB; 1. DR InterPro; IPR022663; DapB_C. DR InterPro; IPR000846; DapB_N. DR InterPro; IPR022664; DapB_N_CS. DR InterPro; IPR023940; DHDPR_bac. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR20836; PTHR20836; 1. DR Pfam; PF05173; DapB_C; 1. DR Pfam; PF01113; DapB_N; 1. DR PIRSF; PIRSF000161; DHPR; 1. DR SUPFAM; SSF51735; SSF51735; 2. DR TIGRFAMs; TIGR00036; dapB; 1. DR PROSITE; PS01298; DAPB; 1. PE 1: Evidence at protein level; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Diaminopimelate biosynthesis; Lysine biosynthesis; NAD; NADP; KW Oxidoreductase; Reference proteome. FT CHAIN 1 254 4-hydroxy-tetrahydrodipicolinate FT reductase. FT /FTId=PRO_0000141445. FT NP_BIND 7 12 NAD(P). {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT NP_BIND 91 93 NAD(P). {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT NP_BIND 115 118 NAD(P). {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT REGION 157 158 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT ACT_SITE 147 147 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00102}. FT ACT_SITE 151 151 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT BINDING 35 35 NADP. {ECO:0000255|HAMAP-Rule:MF_00102}. FT BINDING 148 148 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00102}. FT CONFLICT 22 22 G -> E (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 28 28 A -> V (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 44 44 S -> A (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 76 76 N -> H (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 80 80 A -> T (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 104 104 Q -> K (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 115 115 A -> V (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 120 120 I -> L (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 132 132 T -> A (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 144 144 I -> V (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 154 154 I -> A (in Ref. 1; AAB39718). FT {ECO:0000305}. FT CONFLICT 179 179 I -> T (in Ref. 1; AAB39718). FT {ECO:0000305}. SQ SEQUENCE 254 AA; 27827 MW; 96DBC96B76C5BE3D CRC64; MKIGVYGASG RIGKLLLEEL KGGYKGLALS SVFVRQKCET DFSSFSHAPL VTNDLKAFVR ACECVIDFSL PKGVDNLLEA LLECPKILVS GTTGLEKETL EKMQQLALKA PLLHAHNMSI GIMMLNQLAF LTSLKLKDAD IEIIETHHNL KKDIPSGTAL SLYETCAKAR GYDEKNALIT HREGLRSKES IGIAALRGGD VAGKHTIGFY LEGEYIELSH TATNRSIFAK GALEVALWLK DKAAKKYEIN EMFG // ID CSTA_HELPY Reviewed; 687 AA. AC P56190; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Carbon starvation protein A homolog; GN Name=cstA; OrderedLocusNames=HP_1168; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the CstA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08212.1; -; Genomic_DNA. DR PIR; H64665; H64665. DR RefSeq; NP_207959.1; NC_000915.1. DR RefSeq; WP_001172668.1; NC_018939.1. DR ProteinModelPortal; P56190; -. DR IntAct; P56190; 2. DR MINT; MINT-159567; -. DR STRING; 85962.HP1168; -. DR PaxDb; P56190; -. DR PRIDE; P56190; -. DR EnsemblBacteria; AAD08212; AAD08212; HP_1168. DR GeneID; 899928; -. DR KEGG; heo:C694_06035; -. DR KEGG; hpy:HP1168; -. DR PATRIC; 20593689; VBIHelPyl33062_1223. DR eggNOG; ENOG4105D22; Bacteria. DR eggNOG; COG1966; LUCA. DR KO; K06200; -. DR OMA; WGFSISA; -. DR OrthoDB; EOG6H1PW0; -. DR BioCyc; HPY:HP1168-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0009267; P:cellular response to starvation; IEA:InterPro. DR InterPro; IPR025299; CstA_C. DR InterPro; IPR003706; CstA_N. DR Pfam; PF02554; CstA; 1. DR Pfam; PF13722; CstA_5TM; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 687 Carbon starvation protein A homolog. FT /FTId=PRO_0000190047. FT TRANSMEM 6 26 Helical. {ECO:0000255}. FT TRANSMEM 29 49 Helical. {ECO:0000255}. FT TRANSMEM 87 107 Helical. {ECO:0000255}. FT TRANSMEM 117 137 Helical. {ECO:0000255}. FT TRANSMEM 162 182 Helical. {ECO:0000255}. FT TRANSMEM 190 210 Helical. {ECO:0000255}. FT TRANSMEM 221 241 Helical. {ECO:0000255}. FT TRANSMEM 256 276 Helical. {ECO:0000255}. FT TRANSMEM 285 305 Helical. {ECO:0000255}. FT TRANSMEM 325 345 Helical. {ECO:0000255}. FT TRANSMEM 373 393 Helical. {ECO:0000255}. FT TRANSMEM 440 460 Helical. {ECO:0000255}. FT TRANSMEM 462 482 Helical. {ECO:0000255}. FT TRANSMEM 513 533 Helical. {ECO:0000255}. FT TRANSMEM 546 566 Helical. {ECO:0000255}. FT TRANSMEM 574 594 Helical. {ECO:0000255}. FT TRANSMEM 642 662 Helical. {ECO:0000255}. SQ SEQUENCE 687 AA; 74205 MW; C525D97653E69C3D CRC64; MQKSLVSLAW VFVAILGAIC LGVLALHKGE SINTLWLVVA SACIYSIGYR FYSHFIAYKV LKLDDSRATP ACVRNDGKDF VPTDKAITFG HHFAAIAGAG PLVGPILAAQ MGYLPSILWI LIGSVLGGCV HDFVVLFASI RRDGKSLGEM IKLEMGQFVG MIASLGILGI MLIIIAILAM VVVKALAHSP WGFFTIAMTI PIAILMGLYM RFFRPHKILE VSVIGFILLI IAIYAGKYVS LDPKLASIFT FEASSLAWMI MGYGFVASIL PVWFLLAPRD YLSTFLKIGV IGVLVVAIIF VAPPLQIPKI TPFVDGSGPV FAGSVFPFLF ITVACGTISG FHALISSGTT PKMLAKESDA RLVGYGSMVM ESVVALMALV CAGILHPGLY FAINSPEVSI GKDIADAASV ISSWGFNISA EEIREMTKNI GESSILSRTG GAPTFAIGLA MIVYHILGDP SVMAFWYHFA ILFEALFILT AVDAGTRTAR FMIQDLLGNV YKPLGDLSSY KAGIFATLLC VAGWGYFLYQ GTIDPKGGIY TLWPLFGVSN QMLAGMALLL VTVVLFKMGR FKGAMISALP AVLILSITFY SGILKVVPKS DNSVLNNVSH VAQMQIIKEK MATTTDEKAL KTLQKSFFNH AIDAILCVFF MLVALLVLIV SVRICSNAYF KNKIYPPLAE TPYIKAS // ID DAPA_HELPY Reviewed; 300 AA. AC O25657; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 100. DE RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; DE Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418}; DE EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418}; GN Name=dapA {ECO:0000255|HAMAP-Rule:MF_00418}; GN OrderedLocusNames=HP_1013; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the condensation of (S)-aspartate-beta- CC semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- CC tetrahydrodipicolinate (HTPA). {ECO:0000255|HAMAP-Rule:MF_00418}. CC -!- CATALYTIC ACTIVITY: Pyruvate + L-aspartate-4-semialdehyde = (4S)- CC 4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_00418}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4. CC {ECO:0000255|HAMAP-Rule:MF_00418}. CC -!- SUBUNIT: Homotetramer; dimer of dimers. {ECO:0000255|HAMAP- CC Rule:MF_00418}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00418}. CC -!- SIMILARITY: Belongs to the DapA family. {ECO:0000255|HAMAP- CC Rule:MF_00418}. CC -!- CAUTION: Was originally thought to be a dihydrodipicolinate CC synthase (DHDPS), catalyzing the condensation of (S)-aspartate- CC beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate CC (DHDP). However, it was shown in E.coli that the product of the CC enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4- CC hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that CC the consecutive dehydration reaction leading to DHDP is not CC spontaneous but catalyzed by DapB. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08057.1; -; Genomic_DNA. DR PIR; E64646; E64646. DR RefSeq; NP_207803.1; NC_000915.1. DR RefSeq; WP_001159546.1; NC_018939.1. DR ProteinModelPortal; O25657; -. DR STRING; 85962.HP1013; -. DR PaxDb; O25657; -. DR PRIDE; O25657; -. DR EnsemblBacteria; AAD08057; AAD08057; HP_1013. DR GeneID; 899548; -. DR KEGG; heo:C694_05245; -. DR KEGG; hpy:HP1013; -. DR PATRIC; 20593361; VBIHelPyl33062_1061. DR eggNOG; ENOG4105CDP; Bacteria. DR eggNOG; COG0329; LUCA. DR KO; K01714; -. DR OMA; GMDACVP; -. DR OrthoDB; EOG6W7235; -. DR BioCyc; HPY:HP1013-MONOMER; -. DR UniPathway; UPA00034; UER00017. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008840; F:4-hydroxy-tetrahydrodipicolinate synthase; IEA:UniProtKB-HAMAP. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00418; DapA; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR005263; DapA. DR InterPro; IPR002220; DapA-like. DR InterPro; IPR020625; Schiff_base-form_aldolases_AS. DR PANTHER; PTHR12128; PTHR12128; 1. DR Pfam; PF00701; DHDPS; 1. DR PIRSF; PIRSF001365; DHDPS; 1. DR PRINTS; PR00146; DHPICSNTHASE. DR SMART; SM01130; DHDPS; 1. DR TIGRFAMs; TIGR00674; dapA; 1. DR PROSITE; PS00666; DHDPS_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Diaminopimelate biosynthesis; Lyase; Lysine biosynthesis; KW Reference proteome; Schiff base. FT CHAIN 1 300 4-hydroxy-tetrahydrodipicolinate FT synthase. FT /FTId=PRO_0000103117. FT ACT_SITE 140 140 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00418}. FT ACT_SITE 169 169 Schiff-base intermediate with substrate. FT {ECO:0000255|HAMAP-Rule:MF_00418}. FT BINDING 45 45 Pyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00418}. FT BINDING 210 210 Pyruvate; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00418}. FT SITE 44 44 Part of a proton relay during catalysis. FT {ECO:0000255|HAMAP-Rule:MF_00418}. FT SITE 114 114 Part of a proton relay during catalysis. FT {ECO:0000255|HAMAP-Rule:MF_00418}. SQ SEQUENCE 300 AA; 33219 MW; DCA1A004DF86AAC5 CRC64; MQFHSSSALI TPFKKDLSVD EAAYETLIKR QIFQGMDACV PVGTTGESAT LTHKEHMRCI EIAIETCKNT KTPSNSRMKV LAGVGSNATS ESLSLAKFAQ KIGADAILCV SPYYNRPTQQ GLFEHYKTIA QSVEIPVMLY DVPSRTGVSI EVPTALKLFR EVPNIKAIKE ASGSLKRVTE LHYYEKDFKI FSGEDSLNHS IMFSGGCGVI SVTGNLMPNL ISQMVNCALK QKYQQALEIQ NKLFCLHQAL FVETNPIPIK MAMHLAGLIE NPSYRLPLVA PSKETIQLLE KTLQQYEVIA // ID DAPE_HELPY Reviewed; 383 AA. AC O25002; O32633; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Succinyl-diaminopimelate desuccinylase {ECO:0000255|HAMAP-Rule:MF_01690}; DE Short=SDAP desuccinylase {ECO:0000255|HAMAP-Rule:MF_01690}; DE EC=3.5.1.18 {ECO:0000255|HAMAP-Rule:MF_01690}; DE AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000255|HAMAP-Rule:MF_01690}; GN Name=dapE {ECO:0000255|HAMAP-Rule:MF_01690}; GN OrderedLocusNames=HP_0212; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9317022; RA Karita M., Etterbeek M.L., Forsyth M.H., Tummuru M.K.R., Blaser M.J.; RT "Characterization of Helicobacter pylori dapE and construction of a RT conditionally lethal dapE mutant."; RL Infect. Immun. 65:4158-4164(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the hydrolysis of N-succinyl-L,L- CC diaminopimelic acid (SDAP), forming succinate and LL-2,6- CC diaminoheptanedioate (DAP), an intermediate involved in the CC bacterial biosynthesis of lysine and meso-diaminopimelic acid, an CC essential component of bacterial cell walls. {ECO:0000255|HAMAP- CC Rule:MF_01690, ECO:0000269|PubMed:9317022}. CC -!- CATALYTIC ACTIVITY: N-succinyl-LL-2,6-diaminoheptanedioate + H(2)O CC = succinate + LL-2,6-diaminoheptanedioate. {ECO:0000255|HAMAP- CC Rule:MF_01690}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01690}; CC Note=Binds 1 Zn(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01690}; CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01690}; CC Note=Binds 1 Co(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01690}; CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate CC (succinylase route): step 3/3. {ECO:0000255|HAMAP-Rule:MF_01690}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01690}. CC -!- SIMILARITY: Belongs to the peptidase M20A family. DapE subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01690}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF008565; AAB63297.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07280.1; -; Genomic_DNA. DR PIR; D64546; D64546. DR RefSeq; NP_207010.1; NC_000915.1. DR RefSeq; WP_000339189.1; NC_018939.1. DR ProteinModelPortal; O25002; -. DR DIP; DIP-3691N; -. DR IntAct; O25002; 1. DR MINT; MINT-168114; -. DR STRING; 85962.HP0212; -. DR MEROPS; M20.010; -. DR PaxDb; O25002; -. DR PRIDE; O25002; -. DR EnsemblBacteria; AAD07280; AAD07280; HP_0212. DR GeneID; 900134; -. DR KEGG; heo:C694_01065; -. DR KEGG; hpy:HP0212; -. DR PATRIC; 20591647; VBIHelPyl33062_0223. DR eggNOG; ENOG4105C9Y; Bacteria. DR eggNOG; COG0624; LUCA. DR KO; K01439; -. DR OMA; CQNPIDT; -. DR OrthoDB; EOG60651W; -. DR BioCyc; HPY:HP0212-MONOMER; -. DR UniPathway; UPA00034; UER00021. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050897; F:cobalt ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro. DR GO; GO:0009014; F:succinyl-diaminopimelate desuccinylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.360; -; 1. DR HAMAP; MF_01690; DapE; 1. DR InterPro; IPR001261; ArgE/DapE_CS. DR InterPro; IPR005941; DapE_proteobac. DR InterPro; IPR002933; Peptidase_M20. DR InterPro; IPR011650; Peptidase_M20_dimer. DR Pfam; PF07687; M20_dimer; 1. DR Pfam; PF01546; Peptidase_M20; 1. DR SUPFAM; SSF55031; SSF55031; 1. DR TIGRFAMs; TIGR01246; dapE_proteo; 1. DR PROSITE; PS00759; ARGE_DAPE_CPG2_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Cobalt; Complete proteome; KW Diaminopimelate biosynthesis; Hydrolase; Lysine biosynthesis; KW Metal-binding; Reference proteome; Zinc. FT CHAIN 1 383 Succinyl-diaminopimelate desuccinylase. FT /FTId=PRO_0000375586. FT ACT_SITE 81 81 {ECO:0000255|HAMAP-Rule:MF_01690}. FT ACT_SITE 141 141 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 79 79 Cobalt or zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 110 110 Cobalt or zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 110 110 Cobalt or zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 142 142 Cobalt or zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 170 170 Cobalt or zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT METAL 355 355 Cobalt or zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01690}. FT CONFLICT 2 2 D -> N (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 33 33 H -> A (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 58 58 D -> EHAEKE (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 61 61 E -> K (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 69 69 T -> V (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 75 75 C -> S (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 87 88 NH -> DN (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 97 97 V -> I (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 150 150 R -> K (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 192 192 K -> R (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 221 221 L -> S (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 226 226 N -> H (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 229 229 N -> D (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 241 241 I -> V (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 253 253 I -> V (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 256 256 A -> G (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 261 261 I -> T (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 288 288 Y -> H (in Ref. 1; AAB63297). FT {ECO:0000305}. FT CONFLICT 320 320 H -> R (in Ref. 1; AAB63297). FT {ECO:0000305}. SQ SEQUENCE 383 AA; 42243 MW; E2FD4C64C8C9C051 CRC64; MDALEITQKL ISYPTITPKE CGIFEYIKSL FPHFKTLECG ENGVKNLFLY RIFNPPKDHA EEKHAKENTK PLHFCFAGHI DVVPPGNHWQ SDPFKPVIKE GFLYGRGAQD MKGGVGAFLS ASLNFNPKTP FLLSILLTSD EEGPGIFGTR LMLEKLKEKD LLPHMAIVAE PTCEKVLGDS IKIGRRGSIN GKLILKGVQG HVAYPQKCQN PIDTLASVLP LISGVNLDNG DEYFDPSKLV ITNLHAGLGA NNITPASVEI IFNARHSLKT TKESLKEYLE KVLKDLPYTL ELESSSSPFI TASHSKLTSV LKENILKTCH TTPLLNTKGG TSDARFFSAH GIEVVEFGVI NDRIHAIDER VSLKELELLE KVFLGVLEGL SEA // ID DCDA_HELPY Reviewed; 405 AA. AC P56129; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Diaminopimelate decarboxylase {ECO:0000255|HAMAP-Rule:MF_02120}; DE Short=DAP decarboxylase {ECO:0000255|HAMAP-Rule:MF_02120}; DE Short=DAPDC {ECO:0000255|HAMAP-Rule:MF_02120}; DE EC=4.1.1.20 {ECO:0000255|HAMAP-Rule:MF_02120}; GN Name=lysA {ECO:0000255|HAMAP-Rule:MF_02120}; GN OrderedLocusNames=HP_0290; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically catalyzes the decarboxylation of meso- CC diaminopimelate (meso-DAP) to L-lysine. {ECO:0000255|HAMAP- CC Rule:MF_02120}. CC -!- CATALYTIC ACTIVITY: Meso-2,6-diaminoheptanedioate = L-lysine + CC CO(2). {ECO:0000255|HAMAP-Rule:MF_02120}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_02120}; CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_02120}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_02120}. CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II CC family. LysA subfamily. {ECO:0000255|HAMAP-Rule:MF_02120}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07356.1; -; Genomic_DNA. DR PIR; B64556; B64556. DR RefSeq; NP_207088.1; NC_000915.1. DR RefSeq; WP_000483597.1; NC_018939.1. DR ProteinModelPortal; P56129; -. DR SMR; P56129; 3-402. DR STRING; 85962.HP0290; -. DR PaxDb; P56129; -. DR PRIDE; P56129; -. DR EnsemblBacteria; AAD07356; AAD07356; HP_0290. DR GeneID; 900110; -. DR KEGG; heo:C694_01465; -. DR KEGG; hpy:HP0290; -. DR PATRIC; 20591807; VBIHelPyl33062_0301. DR eggNOG; ENOG4105CU5; Bacteria. DR eggNOG; COG0019; LUCA. DR KO; K01586; -. DR OMA; LKGNKFG; -. DR OrthoDB; EOG6Z9B18; -. DR BioCyc; HPY:HP0290-MONOMER; -. DR BRENDA; 4.1.1.20; 2604. DR UniPathway; UPA00034; UER00027. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.37.10; -; 1. DR Gene3D; 3.20.20.10; -; 1. DR HAMAP; MF_02120; LysA; 1. DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C. DR InterPro; IPR002986; DAP_deCOOHase_LysA. DR InterPro; IPR022643; De-COase2_C. DR InterPro; IPR022644; De-COase2_N. DR InterPro; IPR022653; De-COase2_pyr-phos_BS. DR InterPro; IPR000183; Orn/DAP/Arg_de-COase. DR InterPro; IPR029066; PLP-binding_barrel. DR Pfam; PF02784; Orn_Arg_deC_N; 1. DR Pfam; PF00278; Orn_DAP_Arg_deC; 1. DR PRINTS; PR01181; DAPDCRBXLASE. DR PRINTS; PR01179; ODADCRBXLASE. DR SUPFAM; SSF50621; SSF50621; 1. DR SUPFAM; SSF51419; SSF51419; 1. DR TIGRFAMs; TIGR01048; lysA; 1. DR PROSITE; PS00878; ODR_DC_2_1; 1. DR PROSITE; PS00879; ODR_DC_2_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Decarboxylase; Lyase; KW Lysine biosynthesis; Pyridoxal phosphate; Reference proteome. FT CHAIN 1 405 Diaminopimelate decarboxylase. FT /FTId=PRO_0000149925. FT REGION 259 262 Pyridoxal phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_02120}. FT ACT_SITE 329 329 Proton donor. {ECO:0000255}. FT BINDING 225 225 Pyridoxal phosphate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_02120}. FT BINDING 262 262 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT BINDING 298 298 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT BINDING 302 302 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT BINDING 330 330 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT BINDING 358 358 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT BINDING 358 358 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02120}. FT MOD_RES 46 46 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_02120}. SQ SEQUENCE 405 AA; 45240 MW; 9C7C7EA6E057B45F CRC64; MFNYEELFQT HKTPFYLYDF DKIKQAFLNY KEAFKGRKSL ICYALKANSN LSILSLLAHL ESGADCVSIG EIYRALKAGI KPYRIVFSGV GKSGFEIEQA LKLNILFLNV ESFMELTTIE TIAQSLGIKA RISIRINPNI DAKTHPYIST GLKENKFGVG EKEALEMFLW AKKSAFLEPV SVHFHIGSQL SDLEPIIEAS QKVAKIAKSL IALGIDLRFF DVGGGIGVSY ENEETIKLYD YAQGILNSLQ GLDLTIICEP GRSIVAESGE LITQVLYEKK AQNKRFVVVD AGMNDFLRPS LYHAKHAIRV ITPSKGREIS PCDVVGPVCE SSDTFLKDAH LPELEPGDKL VIEKVGAYGS SMASQYNSRP KLLELALEDH KIRVIRKREA LEDLWRLEEE GLKGV // ID DCUA_HELPY Reviewed; 443 AA. AC O25425; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Anaerobic C4-dicarboxylate transporter DcuA; GN Name=dcuA; OrderedLocusNames=HP_0724; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Responsible for the transport of C4-dicarboxylates from CC the periplasm across the inner membrane. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane CC protein. CC -!- SIMILARITY: Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07773.1; -; Genomic_DNA. DR PIR; D64610; D64610. DR RefSeq; NP_207518.1; NC_000915.1. DR RefSeq; WP_000227192.1; NC_000915.1. DR ProteinModelPortal; O25425; -. DR STRING; 85962.HP0724; -. DR PaxDb; O25425; -. DR PRIDE; O25425; -. DR EnsemblBacteria; AAD07773; AAD07773; HP_0724. DR GeneID; 899323; -. DR KEGG; heo:C694_03725; -. DR KEGG; hpy:HP0724; -. DR PATRIC; 20592735; VBIHelPyl33062_0756. DR eggNOG; ENOG4105DS2; Bacteria. DR eggNOG; COG2704; LUCA. DR KO; K07791; -. DR OMA; PKQINYL; -. DR OrthoDB; EOG6FNHP5; -. DR BioCyc; HPY:HP0724-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015556; F:C4-dicarboxylate transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR004668; Anaer_Dcu_memb_transpt. DR Pfam; PF03605; DcuA_DcuB; 1. DR PIRSF; PIRSF004539; C4-dicrbxl_trns; 1. DR TIGRFAMs; TIGR00770; Dcu; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 443 Anaerobic C4-dicarboxylate transporter FT DcuA. FT /FTId=PRO_0000170350. FT TRANSMEM 1 20 Helical. {ECO:0000250}. FT TOPO_DOM 21 21 Cytoplasmic. {ECO:0000250}. FT TRANSMEM 22 40 Helical. {ECO:0000250}. FT TOPO_DOM 41 56 Periplasmic. {ECO:0000250}. FT TRANSMEM 57 74 Helical. {ECO:0000250}. FT TOPO_DOM 75 88 Cytoplasmic. {ECO:0000250}. FT TRANSMEM 89 106 Helical. {ECO:0000250}. FT TOPO_DOM 107 135 Periplasmic. {ECO:0000250}. FT TRANSMEM 136 150 Helical. {ECO:0000250}. FT TOPO_DOM 151 231 Cytoplasmic. {ECO:0000250}. FT TRANSMEM 232 249 Helical. {ECO:0000250}. FT TOPO_DOM 250 267 Periplasmic. {ECO:0000250}. FT TRANSMEM 268 285 Helical. {ECO:0000250}. FT TOPO_DOM 286 295 Cytoplasmic. {ECO:0000250}. FT TRANSMEM 296 313 Helical. {ECO:0000250}. FT TOPO_DOM 314 335 Periplasmic. {ECO:0000250}. FT TRANSMEM 336 353 Helical. {ECO:0000250}. FT TOPO_DOM 354 358 Cytoplasmic. {ECO:0000250}. FT TRANSMEM 359 383 Helical. {ECO:0000250}. FT TOPO_DOM 384 443 Periplasmic. {ECO:0000250}. SQ SEQUENCE 443 AA; 47173 MW; 0E693630A0B50141 CRC64; MVDAFFQIAV LLFSLFLGAR LGGLGVGYAG GLGVLILCLF LGLNPGKIPF DVILIIMAVI SAISAMQKAG GLDYLVKIAE KILRKHPKQI NYLAPSVAYC LTILAGTGHT VFSLIPVIVE VSQSQNIKPK APLSLAVVSS QVAITASPVS AAVVFMSGIL EPLGANYLTL LMVWIPTTFL ACMLTAFIMG FTDLKLDSDP HYLERLKAGK ISPPKIKEEK ETSKNAKLSL WIFIGGVVAI VFYASAISKN IAFVSPVVLG RDHAIVSFML SVATLIVLFC KINANEIAHS SVFKSGMQAC VCVLGVAWLG DTFVSNHIDE IKRYASFLIA DYPFLLAVAL FLASMLLYSQ AATSKALIPS VITALGISAN HTEHLYIIVA SFASVSALFV LPTYPTLLGA IAMDNTGTTK MGRYVFDHAF LIPGVLVVSL SVALGFVVAP LVL // ID CYSE_HELPY Reviewed; 171 AA. AC P71405; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 97. DE RecName: Full=Serine acetyltransferase; DE Short=SAT; DE EC=2.3.1.30; GN Name=cysE; OrderedLocusNames=HP_1210; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RA Peek R.M. Jr., Thompson S.A., Atherton J.C., Blaser M.J., Miller G.G.; RT "Expression of a novel ulcer-associated gene, iceA, by H. pylori RT following contact with gastric epithelium."; RL Submitted (SEP-1996) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + L-serine = CoA + O-acetyl-L- CC serine. CC -!- PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L- CC cysteine from L-serine: step 1/2. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the transferase hexapeptide repeat family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U43917; AAB07027.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08254.1; -; Genomic_DNA. DR PIR; B64671; B64671. DR RefSeq; NP_208002.1; NC_000915.1. DR RefSeq; WP_000886346.1; NC_018939.1. DR ProteinModelPortal; P71405; -. DR STRING; 85962.HP1210; -. DR PaxDb; P71405; -. DR PRIDE; P71405; -. DR EnsemblBacteria; AAD08254; AAD08254; HP_1210. DR GeneID; 898797; -. DR KEGG; heo:C694_06265; -. DR KEGG; hpy:HP1210; -. DR PATRIC; 20593791; VBIHelPyl33062_1268. DR eggNOG; ENOG4105D7W; Bacteria. DR eggNOG; COG1045; LUCA. DR KO; K00640; -. DR OMA; FVPYGTP; -. DR OrthoDB; EOG6HMXK6; -. DR BioCyc; HPY:HP1210-MONOMER; -. DR UniPathway; UPA00136; UER00199. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009001; F:serine O-acetyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0006535; P:cysteine biosynthetic process from serine; IEA:InterPro. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR018357; Hexapep_transf_CS. DR InterPro; IPR005881; Ser_O-AcTrfase. DR InterPro; IPR011004; Trimer_LpxA-like. DR Pfam; PF00132; Hexapep; 2. DR PIRSF; PIRSF000441; CysE; 1. DR SUPFAM; SSF51161; SSF51161; 1. DR TIGRFAMs; TIGR01172; cysE; 1. DR PROSITE; PS00101; HEXAPEP_TRANSFERASES; 1. PE 3: Inferred from homology; KW Acyltransferase; Amino-acid biosynthesis; Complete proteome; KW Cysteine biosynthesis; Cytoplasm; Reference proteome; Repeat; KW Transferase. FT CHAIN 1 171 Serine acetyltransferase. FT /FTId=PRO_0000068675. FT VARIANT 5 5 S -> F (in strain: 60190). FT VARIANT 110 110 K -> R (in strain: 60190). FT VARIANT 162 162 S -> T (in strain: 60190). SQ SEQUENCE 171 AA; 18342 MW; 28646D539C2250C3 CRC64; MLDLSYSLER VLQEDPAARN KWEVLLLYPG IHALLCYRLA HALHKRRFYF IARALSQLAR FITGIEIHPG AKIGRGLFID HGMGVVIGET TEIGDDVTIY HGVTLGGTGK FKGKRHPTLG NRVVVGAGAK VLGAICVGDD VKIGANAVVL SDLPTGSTAV GSKAKTITKD R // ID CYSM_HELPY Reviewed; 306 AA. AC P56067; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 16-MAR-2016, entry version 105. DE RecName: Full=Cysteine synthase; DE Short=CSase; DE EC=2.5.1.47; DE AltName: Full=O-acetylserine (thiol)-lyase; DE Short=OAS-TL; DE AltName: Full=O-acetylserine sulfhydrylase; GN Name=cysM; Synonyms=cysK; OrderedLocusNames=HP_0107; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: O-acetyl-L-serine + hydrogen sulfide = L- CC cysteine + acetate. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC -!- PATHWAY: Amino-acid biosynthesis; L-cysteine biosynthesis; L- CC cysteine from L-serine: step 2/2. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the cysteine synthase/cystathionine beta- CC synthase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07177.1; -; Genomic_DNA. DR PIR; C64533; C64533. DR RefSeq; NP_206907.1; NC_000915.1. DR RefSeq; WP_000972731.1; NC_000915.1. DR PDB; 4R2V; X-ray; 1.90 A; A/B=1-306. DR PDB; 5HBG; X-ray; 1.90 A; A/B=1-306. DR PDBsum; 4R2V; -. DR PDBsum; 5HBG; -. DR ProteinModelPortal; P56067; -. DR DIP; DIP-3738N; -. DR IntAct; P56067; 1. DR MINT; MINT-168918; -. DR STRING; 85962.HP0107; -. DR PaxDb; P56067; -. DR PRIDE; P56067; -. DR EnsemblBacteria; AAD07177; AAD07177; HP_0107. DR GeneID; 899978; -. DR KEGG; hpy:HP0107; -. DR PATRIC; 20591429; VBIHelPyl33062_0114. DR eggNOG; ENOG4105C6T; Bacteria. DR eggNOG; COG0031; LUCA. DR KO; K01738; -. DR OMA; MSKEIFN; -. DR OrthoDB; EOG6Q2SP8; -. DR BioCyc; HPY:HP0107-MONOMER; -. DR UniPathway; UPA00136; UER00200. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004124; F:cysteine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006535; P:cysteine biosynthetic process from serine; IEA:InterPro. DR InterPro; IPR001216; P-phosphate_BS. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR PROSITE; PS00901; CYS_SYNTHASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; Complete proteome; KW Cysteine biosynthesis; Pyridoxal phosphate; Reference proteome; KW Transferase. FT CHAIN 1 306 Cysteine synthase. FT /FTId=PRO_0000167110. FT REGION 180 184 Pyridoxal phosphate binding. FT {ECO:0000250}. FT BINDING 76 76 Pyridoxal phosphate. {ECO:0000250}. FT BINDING 267 267 Pyridoxal phosphate. {ECO:0000250}. FT MOD_RES 46 46 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. FT STRAND 3 6 {ECO:0000244|PDB:4R2V}. FT HELIX 7 10 {ECO:0000244|PDB:4R2V}. FT STRAND 16 19 {ECO:0000244|PDB:4R2V}. FT TURN 21 23 {ECO:0000244|PDB:4R2V}. FT STRAND 31 36 {ECO:0000244|PDB:4R2V}. FT HELIX 37 39 {ECO:0000244|PDB:4R2V}. FT HELIX 46 60 {ECO:0000244|PDB:4R2V}. FT STRAND 68 72 {ECO:0000244|PDB:4R2V}. FT HELIX 76 85 {ECO:0000244|PDB:4R2V}. FT TURN 86 89 {ECO:0000244|PDB:4R2V}. FT STRAND 91 97 {ECO:0000244|PDB:4R2V}. FT HELIX 102 110 {ECO:0000244|PDB:4R2V}. FT STRAND 114 118 {ECO:0000244|PDB:4R2V}. FT HELIX 123 137 {ECO:0000244|PDB:4R2V}. FT TURN 146 148 {ECO:0000244|PDB:4R2V}. FT HELIX 151 158 {ECO:0000244|PDB:4R2V}. FT HELIX 160 168 {ECO:0000244|PDB:4R2V}. FT STRAND 174 178 {ECO:0000244|PDB:4R2V}. FT STRAND 180 182 {ECO:0000244|PDB:4R2V}. FT HELIX 183 195 {ECO:0000244|PDB:4R2V}. FT STRAND 200 206 {ECO:0000244|PDB:4R2V}. FT STRAND 240 244 {ECO:0000244|PDB:4R2V}. FT HELIX 246 260 {ECO:0000244|PDB:4R2V}. FT HELIX 266 281 {ECO:0000244|PDB:4R2V}. FT STRAND 287 292 {ECO:0000244|PDB:4R2V}. FT HELIX 296 299 {ECO:0000244|PDB:4R2V}. FT TURN 300 305 {ECO:0000244|PDB:4R2V}. SQ SEQUENCE 306 AA; 32942 MW; AE2FF7EE0373DA17 CRC64; MMIITTMQDA IGRTPVFKFT NKDYPIPLNS AIYAKLEHLN PGGSVKDRLG QYLIGEGFKT GKITSKTTII EPTAGNTGIA LALVAIKHHL KTIFVVPEKF STEKQQIMRA LGALVINTPT SEGISGAIKK SKELAESIPD SYLPLQFENP DNPAAYYHTL APEIVQELGT NLTSFVAGIG SGGTFAGTAR YLKERIPAIR LIGVEPEGSI LNGGEPGPHE IEGIGVEFIP PFFENLDIDG FETISDEEGF SYTRKLAKKN GLLVGSSSGA AFVAALKEAQ RLPEGSQVLT IFPDVADRYL SKGIYL // ID DAPD_HELPY Reviewed; 401 AA. AC O25343; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 82. DE RecName: Full=2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_02122}; DE EC=2.3.1.117 {ECO:0000255|HAMAP-Rule:MF_02122}; DE AltName: Full=Tetrahydrodipicolinate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_02122}; DE Short=THDP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_02122}; DE Short=THP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_02122}; DE AltName: Full=Tetrahydropicolinate succinylase {ECO:0000255|HAMAP-Rule:MF_02122}; GN Name=dapD {ECO:0000255|HAMAP-Rule:MF_02122}; GN OrderedLocusNames=HP_0626; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of the cyclic CC tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- CC amino-6-oxopimelate using succinyl-CoA. {ECO:0000255|HAMAP- CC Rule:MF_02122}. CC -!- CATALYTIC ACTIVITY: Succinyl-CoA + (S)-2,3,4,5-tetrahydropyridine- CC 2,6-dicarboxylate + H(2)O = CoA + N-succinyl-L-2-amino-6- CC oxoheptanedioate. {ECO:0000255|HAMAP-Rule:MF_02122}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate CC (succinylase route): step 1/3. {ECO:0000255|HAMAP-Rule:MF_02122}. CC -!- SUBUNIT: Homotrimer. {ECO:0000255|HAMAP-Rule:MF_02122}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02122}. CC -!- SIMILARITY: Belongs to the type 2 tetrahydrodipicolinate N- CC succinyltransferase family. {ECO:0000255|HAMAP-Rule:MF_02122}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07696.1; -; Genomic_DNA. DR PIR; B64598; B64598. DR RefSeq; NP_207420.1; NC_000915.1. DR RefSeq; WP_000608576.1; NC_018939.1. DR ProteinModelPortal; O25343; -. DR DIP; DIP-3232N; -. DR IntAct; O25343; 5. DR MINT; MINT-183854; -. DR STRING; 85962.HP0626; -. DR PaxDb; O25343; -. DR PRIDE; O25343; -. DR EnsemblBacteria; AAD07696; AAD07696; HP_0626. DR GeneID; 898801; -. DR KEGG; heo:C694_03240; -. DR KEGG; hpy:HP0626; -. DR PATRIC; 20592535; VBIHelPyl33062_0656. DR eggNOG; ENOG4105EJ3; Bacteria. DR eggNOG; COG2171; LUCA. DR KO; K00674; -. DR OMA; KHANNLY; -. DR OrthoDB; EOG6HQSR3; -. DR BioCyc; HPY:HP0626-MONOMER; -. DR UniPathway; UPA00034; UER00019. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008666; F:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.60.70; -; 1. DR HAMAP; MF_02122; DapD_type2; 1. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR032784; THDPS_M. DR InterPro; IPR011004; Trimer_LpxA-like. DR InterPro; IPR026586; Type2_DapD. DR Pfam; PF14602; Hexapep_2; 1. DR Pfam; PF14789; THDPS_M; 1. DR SUPFAM; SSF51161; SSF51161; 1. PE 3: Inferred from homology; KW Acyltransferase; Amino-acid biosynthesis; Complete proteome; KW Cytoplasm; Diaminopimelate biosynthesis; Lysine biosynthesis; KW Reference proteome; Transferase. FT CHAIN 1 401 2,3,4,5-tetrahydropyridine-2,6- FT dicarboxylate N-succinyltransferase. FT /FTId=PRO_0000412260. FT REGION 327 328 Succinyl-CoA binding. {ECO:0000255|HAMAP- FT Rule:MF_02122}. FT ACT_SITE 269 269 Acyl-anhydride intermediate. FT {ECO:0000255|HAMAP-Rule:MF_02122}. FT BINDING 271 271 Succinyl-CoA. {ECO:0000255|HAMAP- FT Rule:MF_02122}. FT BINDING 286 286 Succinyl-CoA; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_02122}. FT BINDING 289 289 Succinyl-CoA. {ECO:0000255|HAMAP- FT Rule:MF_02122}. FT BINDING 312 312 Succinyl-CoA; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_02122}. FT BINDING 335 335 Succinyl-CoA; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_02122}. FT BINDING 364 364 Succinyl-CoA. {ECO:0000255|HAMAP- FT Rule:MF_02122}. SQ SEQUENCE 401 AA; 44204 MW; 122E01CD42414A55 CRC64; MINKFKNFVS NYQQSNHYKE PLGFGIARVD IAPISKKILC ATYPVLNWKD ENLGSYAVFC NSLSKEKILK ESASERVIEI DESFVLKALD FYTPFLNEAY SNKMAHKNIQ VVLELLKALE ENRLKNSDGE SLYRLVILYE DKPCESVESA YMKLLALSLG KAPLRSLNLE GIFNQLSNAA WSGNKPYELE WLRMNEVALK MRDHFPSIDF IDKFPRYLMQ LIPEFDNIRL LDSSKTRFGA YLGTGGYTQM PGASYVNFNA GAMGVCMNEG RISSSVVVGA GTDIGGGASV LGVLSGGNNN PISIGKNCLL GANSVTGISL GDGCIVDAGV AILAGSVIEI EENEFKKLLE VNSALEKHAN NLYKGKELSG KNGVHFRSNS QNGKLIAFRS VKKIELNQNL H // ID DAPF_HELPY Reviewed; 273 AA. AC O25290; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Diaminopimelate epimerase {ECO:0000255|HAMAP-Rule:MF_00197}; DE Short=DAP epimerase {ECO:0000255|HAMAP-Rule:MF_00197}; DE EC=5.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00197}; GN Name=dapF {ECO:0000255|HAMAP-Rule:MF_00197}; GN OrderedLocusNames=HP_0566; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the stereoinversion of LL-2,6- CC diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- CC DAP), a precursor of L-lysine and an essential component of the CC bacterial peptidoglycan. {ECO:0000255|HAMAP-Rule:MF_00197}. CC -!- CATALYTIC ACTIVITY: LL-2,6-diaminoheptanedioate = meso- CC diaminoheptanedioate. {ECO:0000255|HAMAP-Rule:MF_00197}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step CC 1/1. {ECO:0000255|HAMAP-Rule:MF_00197}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00197}. CC -!- SIMILARITY: Belongs to the diaminopimelate epimerase family. CC {ECO:0000255|HAMAP-Rule:MF_00197}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07622.1; -; Genomic_DNA. DR PIR; F64590; F64590. DR RefSeq; NP_207361.1; NC_000915.1. DR RefSeq; WP_000232462.1; NC_018939.1. DR ProteinModelPortal; O25290; -. DR IntAct; O25290; 2. DR STRING; 85962.HP0566; -. DR PaxDb; O25290; -. DR PRIDE; O25290; -. DR EnsemblBacteria; AAD07622; AAD07622; HP_0566. DR GeneID; 899009; -. DR KEGG; heo:C694_02920; -. DR KEGG; hpy:HP0566; -. DR PATRIC; 20592405; VBIHelPyl33062_0591. DR eggNOG; ENOG4105E4Z; Bacteria. DR eggNOG; COG0253; LUCA. DR KO; K01778; -. DR OMA; HEGFGAD; -. DR OrthoDB; EOG6ND0M5; -. DR BioCyc; HPY:HP0566-MONOMER; -. DR UniPathway; UPA00034; UER00025. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008837; F:diaminopimelate epimerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00197; DAP_epimerase; 1. DR InterPro; IPR018510; DAP_epimerase_AS. DR InterPro; IPR001653; DAP_epimerase_DapF. DR PANTHER; PTHR31689; PTHR31689; 1. DR Pfam; PF01678; DAP_epimerase; 2. DR TIGRFAMs; TIGR00652; DapF; 1. DR PROSITE; PS01326; DAP_EPIMERASE; 1. PE 1: Evidence at protein level; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; Disulfide bond; KW Isomerase; Lysine biosynthesis; Reference proteome. FT CHAIN 1 273 Diaminopimelate epimerase. FT /FTId=PRO_0000149843. FT REGION 69 71 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT REGION 199 200 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT REGION 210 211 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT ACT_SITE 69 69 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00197}. FT ACT_SITE 209 209 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00197}. FT BINDING 11 11 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT BINDING 42 42 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT BINDING 60 60 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT BINDING 181 181 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00197}. FT SITE 152 152 Important for catalytic activity. FT {ECO:0000255|HAMAP-Rule:MF_00197}. FT SITE 199 199 Important for catalytic activity. FT {ECO:0000255|HAMAP-Rule:MF_00197}. FT DISULFID 69 209 SQ SEQUENCE 273 AA; 30500 MW; 73F3D7917AD35ACD CRC64; MVFYKYSGSG NDFLIVQSFK KKDFSNLAKQ VCHRHEGFGA DGLVVVLPSK DYDYEWDFYN SDGSKAGMCG NASRCVGLFA YQHAIASKNH VFLAGKREIS ICIEEPNIIE SNLGNYKILD VIPALRCEKF FSSGSVLEHI PTFYLIDTGV PHLVGFVENK EGLNSLNTLE LRALRHEFNA NINIAFIENK ETIFLQTYER GVEDFTLACG TGMAAVFIAA RIFYNTPKKA ALIPKSNESL ELSLKNDGIF YKGAVRYIGM SVLGMRVFEN GCF // ID DBH_HELPY Reviewed; 94 AA. AC O25506; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=DNA-binding protein HU; GN Name=hup; OrderedLocusNames=HP_0835; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Histone-like DNA-binding protein which is capable of CC wrapping DNA to stabilize it, and thus to prevent its denaturation CC under extreme environmental conditions. {ECO:0000250}. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the bacterial histone-like protein family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07885.1; -; Genomic_DNA. DR PIR; C64624; C64624. DR RefSeq; NP_207628.1; NC_000915.1. DR RefSeq; WP_001029082.1; NC_018939.1. DR ProteinModelPortal; O25506; -. DR IntAct; O25506; 1. DR STRING; 85962.HP0835; -. DR PaxDb; O25506; -. DR PRIDE; O25506; -. DR EnsemblBacteria; AAD07885; AAD07885; HP_0835. DR GeneID; 899366; -. DR KEGG; heo:C694_04280; -. DR KEGG; hpy:HP0835; -. DR PATRIC; 20592961; VBIHelPyl33062_0869. DR eggNOG; ENOG410841J; Bacteria. DR eggNOG; COG0776; LUCA. DR KO; K03530; -. DR OMA; DKMVPKF; -. DR OrthoDB; EOG615VS6; -. DR BioCyc; HPY:HP0835-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0030261; P:chromosome condensation; IEA:UniProtKB-KW. DR Gene3D; 4.10.520.10; -; 1. DR InterPro; IPR000119; Hist_DNA-bd. DR InterPro; IPR010992; IHF-like_DNA-bd_dom. DR Pfam; PF00216; Bac_DNA_binding; 1. DR PRINTS; PR01727; DNABINDINGHU. DR SMART; SM00411; BHL; 1. DR SUPFAM; SSF47729; SSF47729; 1. PE 3: Inferred from homology; KW Complete proteome; DNA condensation; DNA-binding; Reference proteome. FT CHAIN 1 94 DNA-binding protein HU. FT /FTId=PRO_0000104944. SQ SEQUENCE 94 AA; 10384 MW; 1D3E3D64ACBB186C CRC64; MNKAEFIDLV KEAGKYNSKR EAEEAISAFT LAVETALSKG ESVELIGFGK FETAEQKGKE GKVPGSDKTY KTEDKRVPKF KPGKTLKQKV EEGK // ID DCUP_HELPY Reviewed; 339 AA. AC O25325; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-NOV-2015, entry version 102. DE RecName: Full=Uroporphyrinogen decarboxylase {ECO:0000255|HAMAP-Rule:MF_00218}; DE Short=UPD {ECO:0000255|HAMAP-Rule:MF_00218}; DE Short=URO-D {ECO:0000255|HAMAP-Rule:MF_00218}; DE EC=4.1.1.37 {ECO:0000255|HAMAP-Rule:MF_00218}; GN Name=hemE {ECO:0000255|HAMAP-Rule:MF_00218}; GN OrderedLocusNames=HP_0604; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the decarboxylation of four acetate groups of CC uroporphyrinogen-III to yield coproporphyrinogen-III. CC {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- CATALYTIC ACTIVITY: Uroporphyrinogen III = coproporphyrinogen + 4 CC CO(2). {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: CC step 4/4. {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- SIMILARITY: Belongs to the uroporphyrinogen decarboxylase family. CC {ECO:0000255|HAMAP-Rule:MF_00218}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07669.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07669.1; ALT_INIT; Genomic_DNA. DR PIR; D64595; D64595. DR RefSeq; NP_207399.1; NC_000915.1. DR RefSeq; WP_000972518.1; NC_000915.1. DR RefSeq; WP_001863317.1; NC_018939.1. DR ProteinModelPortal; O25325; -. DR STRING; 85962.HP0604; -. DR PaxDb; O25325; -. DR EnsemblBacteria; AAD07669; AAD07669; HP_0604. DR GeneID; 898968; -. DR KEGG; heo:C694_03125; -. DR KEGG; hpy:HP0604; -. DR PATRIC; 20592487; VBIHelPyl33062_0632. DR eggNOG; ENOG4105CFZ; Bacteria. DR eggNOG; COG0407; LUCA. DR KO; K01599; -. DR OMA; GSSKDFR; -. DR OrthoDB; EOG6VXF6H; -. DR UniPathway; UPA00251; UER00321. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004853; F:uroporphyrinogen decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00218; URO_D; 1. DR InterPro; IPR006361; Uroporphyrinogen_deCO2ase_HemE. DR InterPro; IPR000257; Uroporphyrinogen_deCOase. DR Pfam; PF01208; URO-D; 1. DR TIGRFAMs; TIGR01464; hemE; 1. DR PROSITE; PS00906; UROD_1; 1. DR PROSITE; PS00907; UROD_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Decarboxylase; Lyase; KW Porphyrin biosynthesis; Reference proteome. FT CHAIN 1 339 Uroporphyrinogen decarboxylase. FT /FTId=PRO_0000187608. FT REGION 21 25 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT BINDING 40 40 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT BINDING 71 71 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT BINDING 147 147 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT BINDING 202 202 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT BINDING 315 315 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00218}. FT SITE 71 71 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_00218}. SQ SEQUENCE 339 AA; 38340 MW; 766E03ADAAF42726 CRC64; MIFIDACFRK ETPYTPIWMM RQAGRYLSEY QESRKKAGSF LELCKNSDLA TEVTLQPVEI LGVDAAILFS DILVVPLEMG LNLEFIPKKG PHFLETITDL KSVESLKVGA YKQLNYVYDT ISQTRQKLSR EKALIGFCGS PWTLATYMIE GEGSKSYAKS KKMLYSEPEV LKALLEKLSL ELIEYLSLQI QAGVNAVMIF DSWASALEKE AYLKFSWDYL KKISKELKKR YAHIPVILFP KGIGAYLDSI DGEFDVFGVD WGTPLTAAKK ILGGKYVLQG NLEPTRLYDK NALEEGVETI LKVMGNQGHI FNLGHGMLPD LPRENAKYLV QLVHAKTRR // ID DADA_HELPY Reviewed; 410 AA. AC O25597; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=D-amino acid dehydrogenase {ECO:0000250|UniProtKB:A3KEZ1}; DE Short=DAD {ECO:0000250|UniProtKB:A3KEZ1}; DE EC=1.4.5.1 {ECO:0000250|UniProtKB:A3KEZ1}; GN Name=dadA {ECO:0000250|UniProtKB:A3KEZ1}; OrderedLocusNames=HP_0943; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the oxidative deamination of D-amino acids. CC Has broad substrate specificity; is mostly active on D-proline, CC and to a lesser extent, on several other D-amino acids such as D- CC alanine, D-phenylalanine and D-serine. Mediates electron transport CC from D-proline to coenzyme Q1 in vitro, and is involved in the CC electron transport chain from D-proline to the c-type cytochrome CC in vivo. {ECO:0000250|UniProtKB:A3KEZ1}. CC -!- CATALYTIC ACTIVITY: A D-amino acid + H(2)O + a quinone = a 2-oxo CC acid + NH(3) + a quinol. {ECO:0000250|UniProtKB:A3KEZ1}. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000250|UniProtKB:A3KEZ1}; CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000250|UniProtKB:A3KEZ1}; Peripheral membrane protein CC {ECO:0000305}. CC -!- SIMILARITY: Belongs to the DadA oxidoreductase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07988.1; -; Genomic_DNA. DR PIR; G64637; G64637. DR RefSeq; NP_207735.1; NC_000915.1. DR RefSeq; WP_000712480.1; NC_018939.1. DR ProteinModelPortal; O25597; -. DR STRING; 85962.HP0943; -. DR PaxDb; O25597; -. DR PRIDE; O25597; -. DR DNASU; 899472; -. DR EnsemblBacteria; AAD07988; AAD07988; HP_0943. DR GeneID; 899472; -. DR KEGG; heo:C694_04855; -. DR KEGG; hpy:HP0943; -. DR PATRIC; 20593189; VBIHelPyl33062_0980. DR eggNOG; ENOG4107QMZ; Bacteria. DR eggNOG; COG0665; LUCA. DR KO; K00285; -. DR OMA; NSGAYKI; -. DR OrthoDB; EOG6KMBD9; -. DR BioCyc; HPY:HP0943-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR Gene3D; 3.50.50.60; -; 3. DR InterPro; IPR006076; FAD-dep_OxRdtase. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF01266; DAO; 1. DR SUPFAM; SSF51905; SSF51905; 3. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; KW Electron transport; FAD; Flavoprotein; Membrane; Oxidoreductase; KW Reference proteome; Transport. FT CHAIN 1 410 D-amino acid dehydrogenase. FT /FTId=PRO_0000166162. FT NP_BIND 9 14 FAD. {ECO:0000250|UniProtKB:A3KEZ1}. SQ SEQUENCE 410 AA; 46113 MW; 8F4EC7349C93CC91 CRC64; MKKEVVVIGG GIVGLSCAYS MHKLGHKVCV IEKNDGANGT SFGNAGLISA FKKAPLSCPG VVLDTLKLML KNQAPLKFHF GLNLKLYQWI LKFVKSANAK STHRTMALFE RYGWLSIDMY HQMLKDGMDF WYKEDGLLMI YTLEESFEKK LKTCDNSGAY KILSAKETKE YMPVVNDNIC GSVLLTENAH VDPGEVMHSL QEYLQNVGVE FLYNEEVIDF EFKNNLIEGV ITHKEKIQAE TIILATGANP TLIKKTKNDF LMMGAKGYSI TFKMPEELKP KTSSLFADIF MAMTPRRDTV RITSKLELNT NNALIDKEQI ANMKKNLAAF TQPFEMKDAI EWCGFRPLTP NDIPYLGYDK RYKNLIHATG LGWLGITFGP AIGKIIANLS QDGANEKNAD IMLFSAFFRD // ID DEOD_HELPY Reviewed; 233 AA. AC P56463; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 20-JAN-2016, entry version 92. DE RecName: Full=Purine nucleoside phosphorylase DeoD-type {ECO:0000255|HAMAP-Rule:MF_01627}; DE Short=PNP {ECO:0000255|HAMAP-Rule:MF_01627}; DE EC=2.4.2.1 {ECO:0000255|HAMAP-Rule:MF_01627}; GN Name=deoD {ECO:0000255|HAMAP-Rule:MF_01627}; GN OrderedLocusNames=HP_1178; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Purine nucleoside + phosphate = purine + CC alpha-D-ribose 1-phosphate. {ECO:0000255|HAMAP-Rule:MF_01627}. CC -!- CATALYTIC ACTIVITY: Purine deoxynucleoside + phosphate = purine + CC 2'-deoxy-alpha-D-ribose 1-phosphate. {ECO:0000255|HAMAP- CC Rule:MF_01627}. CC -!- SUBUNIT: Homohexamer. {ECO:0000255|HAMAP-Rule:MF_01627}. CC -!- SIMILARITY: Belongs to the PNP/UDP phosphorylase family. CC {ECO:0000255|HAMAP-Rule:MF_01627}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08222.1; -; Genomic_DNA. DR PIR; B64667; B64667. DR RefSeq; NP_207969.1; NC_000915.1. DR RefSeq; WP_000187711.1; NC_018939.1. DR ProteinModelPortal; P56463; -. DR SMR; P56463; 1-231. DR IntAct; P56463; 1. DR STRING; 85962.HP1178; -. DR PaxDb; P56463; -. DR PRIDE; P56463; -. DR EnsemblBacteria; AAD08222; AAD08222; HP_1178. DR GeneID; 899938; -. DR KEGG; heo:C694_06090; -. DR KEGG; hpy:HP1178; -. DR PATRIC; 20593709; VBIHelPyl33062_1233. DR eggNOG; ENOG4105D3A; Bacteria. DR eggNOG; COG0813; LUCA. DR KO; K03784; -. DR OMA; PQCLLCG; -. DR OrthoDB; EOG6BKJC5; -. DR BioCyc; HPY:HP1178-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004731; F:purine-nucleoside phosphorylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042278; P:purine nucleoside metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1580; -; 1. DR HAMAP; MF_01627; Pur_nucleosid_phosp; 1. DR InterPro; IPR004402; DeoD-type. DR InterPro; IPR018017; Nucleoside_phosphorylase. DR InterPro; IPR018016; Nucleoside_phosphorylase_CS. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR PANTHER; PTHR21234; PTHR21234; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR TIGRFAMs; TIGR00107; deoD; 1. DR PROSITE; PS01232; PNP_UDP_1; 1. PE 3: Inferred from homology; KW Complete proteome; Glycosyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 233 Purine nucleoside phosphorylase DeoD- FT type. FT /FTId=PRO_0000063137. FT REGION 87 90 Phosphate binding. FT {ECO:0000250|UniProtKB:P50389}. FT REGION 179 181 Purine nucleoside binding. FT {ECO:0000250|UniProtKB:P50389}. FT REGION 203 204 Purine nucleoside binding. FT {ECO:0000250|UniProtKB:P50389}. FT BINDING 4 4 Purine nucleoside; shared with dimeric FT partner. {ECO:0000250|UniProtKB:P50389}. FT BINDING 20 20 Phosphate; via amide nitrogen. FT {ECO:0000250|UniProtKB:P50389}. FT BINDING 24 24 Phosphate. FT {ECO:0000250|UniProtKB:P50389}. FT BINDING 43 43 Phosphate; shared with dimeric partner. FT {ECO:0000250|UniProtKB:P50389}. SQ SEQUENCE 233 AA; 25786 MW; 1E44E717F8BDAC9D CRC64; MTPHINAKIG DFYPQCLLCG DPLRVSYIAK KFLQDAKEIT NVRNMLGFSG KYKGRGISLM GHGMGIASCT IYVTELIKTY QVKELLRIGT CGAISPKVGL KDIIMATGAS TDSKTNRVRF LNHDLSATPD FELSLRAYQT AKRLGIDLKV GNVFSSDFFY SFETHAFDLM AKYNHLAIEM EAAGLYATAM ELNAKALCLC SVSDHLITKE ALSPKERVES FDNMIILALE MMS // ID DEF_HELPY Reviewed; 174 AA. AC P56419; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Peptide deformylase; DE Short=PDF; DE EC=3.5.1.88; DE AltName: Full=Polypeptide deformylase; GN Name=def; OrderedLocusNames=HP_0793; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Removes the formyl group from the N-terminal Met of CC newly synthesized proteins. Requires at least a dipeptide for an CC efficient rate of reaction. N-terminal L-methionine is a CC prerequisite for activity but the enzyme has broad specificity at CC other positions (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Formyl-L-methionyl peptide + H(2)O = formate + CC methionyl peptide. CC -!- COFACTOR: CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; Evidence={ECO:0000250}; CC Note=Binds 1 Fe(2+) ion. {ECO:0000250}; CC -!- SIMILARITY: Belongs to the polypeptide deformylase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07841.1; -; Genomic_DNA. DR PIR; A64619; A64619. DR RefSeq; NP_207586.1; NC_000915.1. DR RefSeq; WP_001185845.1; NC_018939.1. DR ProteinModelPortal; P56419; -. DR SMR; P56419; 2-167. DR DIP; DIP-3266N; -. DR IntAct; P56419; 5. DR MINT; MINT-165640; -. DR STRING; 85962.HP0793; -. DR PaxDb; P56419; -. DR PRIDE; P56419; -. DR EnsemblBacteria; AAD07841; AAD07841; HP_0793. DR GeneID; 899348; -. DR KEGG; heo:C694_04065; -. DR KEGG; hpy:HP0793; -. DR PATRIC; 20592873; VBIHelPyl33062_0825. DR eggNOG; ENOG4108Z02; Bacteria. DR eggNOG; COG0242; LUCA. DR KO; K01462; -. DR OMA; MYREGCL; -. DR OrthoDB; EOG664CMF; -. DR BioCyc; HPY:HP0793-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0042586; F:peptide deformylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.45.10; -; 1. DR HAMAP; MF_00163; Pep_deformylase; 1. DR InterPro; IPR000181; Fmet_deformylase. DR InterPro; IPR023635; Peptide_deformylase. DR PANTHER; PTHR10458; PTHR10458; 1. DR Pfam; PF01327; Pep_deformylase; 1. DR PIRSF; PIRSF004749; Pep_def; 1. DR PRINTS; PR01576; PDEFORMYLASE. DR SUPFAM; SSF56420; SSF56420; 1. DR TIGRFAMs; TIGR00079; pept_deformyl; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Iron; Metal-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 174 Peptide deformylase. FT /FTId=PRO_0000082790. FT ACT_SITE 139 139 {ECO:0000250}. FT METAL 96 96 Iron. {ECO:0000250}. FT METAL 138 138 Iron. {ECO:0000250}. FT METAL 142 142 Iron. {ECO:0000250}. SQ SEQUENCE 174 AA; 20057 MW; 375525F45E5CC774 CRC64; MALLEIIHYP SKILRTISKE VVSFDSKLHQ QLDDMHETMI ASEGIGLAAI QVGLPLRMLI INLPQEDGVQ HKEDCLEIIN PKFIETGGSM MYREGCLSVP GFYEEVERFE KVKIEYQNRF AEVKVLEASE LLAVAIQHEI DHLNGVLFVD KLSILKRKKF EKELKELQKK QKHE // ID DHAS_HELPY Reviewed; 346 AA. AC O25801; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 107. DE RecName: Full=Aspartate-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_02121}; DE Short=ASA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_02121}; DE Short=ASADH {ECO:0000255|HAMAP-Rule:MF_02121}; DE EC=1.2.1.11 {ECO:0000255|HAMAP-Rule:MF_02121}; DE AltName: Full=Aspartate-beta-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_02121}; GN Name=asd {ECO:0000255|HAMAP-Rule:MF_02121}; OrderedLocusNames=HP_1189; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the NADPH-dependent formation of L-aspartate- CC semialdehyde (L-ASA) by the reductive dephosphorylation of L- CC aspartyl-4-phosphate. {ECO:0000255|HAMAP-Rule:MF_02121}. CC -!- CATALYTIC ACTIVITY: L-aspartate 4-semialdehyde + phosphate + CC NADP(+) = L-4-aspartyl phosphate + NADPH. {ECO:0000255|HAMAP- CC Rule:MF_02121}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP CC pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4. CC {ECO:0000255|HAMAP-Rule:MF_02121}. CC -!- PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de CC novo pathway; L-homoserine from L-aspartate: step 2/3. CC {ECO:0000255|HAMAP-Rule:MF_02121}. CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 2/5. {ECO:0000255|HAMAP- CC Rule:MF_02121}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_02121}. CC -!- SIMILARITY: Belongs to the aspartate-semialdehyde dehydrogenase CC family. {ECO:0000255|HAMAP-Rule:MF_02121}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08235.1; -; Genomic_DNA. DR PIR; E64668; E64668. DR RefSeq; NP_207980.1; NC_000915.1. DR RefSeq; WP_000860874.1; NC_018939.1. DR ProteinModelPortal; O25801; -. DR DIP; DIP-3753N; -. DR IntAct; O25801; 1. DR MINT; MINT-169344; -. DR STRING; 85962.HP1189; -. DR BindingDB; O25801; -. DR ChEMBL; CHEMBL5687; -. DR PaxDb; O25801; -. DR PRIDE; O25801; -. DR EnsemblBacteria; AAD08235; AAD08235; HP_1189. DR GeneID; 899951; -. DR KEGG; heo:C694_06155; -. DR KEGG; hpy:HP1189; -. DR PATRIC; 20593737; VBIHelPyl33062_1246. DR eggNOG; ENOG4105CM3; Bacteria. DR eggNOG; COG0136; LUCA. DR KO; K00133; -. DR OMA; KWHKGII; -. DR OrthoDB; EOG6JB158; -. DR BioCyc; HPY:HP1189-MONOMER; -. DR BRENDA; 1.2.1.11; 2604. DR UniPathway; UPA00034; UER00016. DR UniPathway; UPA00050; UER00463. DR UniPathway; UPA00051; UER00464. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004073; F:aspartate-semialdehyde dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003942; F:N-acetyl-gamma-glutamyl-phosphate reductase activity; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0050661; F:NADP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0071266; P:'de novo' L-methionine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:InterPro. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-HAMAP. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_02121; ASADH; 1. DR InterPro; IPR000319; Asp-semialdehyde_DH_CS. DR InterPro; IPR012080; Asp_semialdehyde_DH. DR InterPro; IPR005986; Asp_semialdehyde_DH_beta. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000534; Semialdehyde_DH_NAD-bd. DR InterPro; IPR012280; Semialdhyde_DH_dimer_dom. DR Pfam; PF01118; Semialdhyde_dh; 1. DR Pfam; PF02774; Semialdhyde_dhC; 1. DR PIRSF; PIRSF000148; ASA_dh; 1. DR SMART; SM00859; Semialdhyde_dh; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01296; asd_B; 1. DR PROSITE; PS01103; ASD; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; KW Diaminopimelate biosynthesis; Lysine biosynthesis; KW Methionine biosynthesis; NADP; Oxidoreductase; Reference proteome; KW Threonine biosynthesis. FT CHAIN 1 346 Aspartate-semialdehyde dehydrogenase. FT /FTId=PRO_0000141376. FT NP_BIND 12 15 NADP. {ECO:0000255|HAMAP-Rule:MF_02121}. FT NP_BIND 40 41 NADP. {ECO:0000255|HAMAP-Rule:MF_02121}. FT NP_BIND 161 162 NADP. {ECO:0000255|HAMAP-Rule:MF_02121}. FT ACT_SITE 131 131 Acyl-thioester intermediate. FT {ECO:0000255|HAMAP-Rule:MF_02121}. FT ACT_SITE 253 253 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_02121}. FT BINDING 101 101 Phosphate. {ECO:0000255|HAMAP- FT Rule:MF_02121}. FT BINDING 158 158 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02121}. FT BINDING 225 225 Phosphate. {ECO:0000255|HAMAP- FT Rule:MF_02121}. FT BINDING 246 246 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02121}. FT BINDING 326 326 NADP. {ECO:0000255|HAMAP-Rule:MF_02121}. SQ SEQUENCE 346 AA; 38116 MW; EAF10B9108A72330 CRC64; MKTYNVAIVG ASGAVGQELI KGLENSFFPI KKFVPLASTR SAGKKIKAFN KDYEILETTH EVFEREKIDI AFFSAGGSVS EEFATSASKT ALVVDNTSFF RLNKDVPLVV PEINAKEIFN APLNIIANPN CSTIQMTQIL NPLHLHFKIK SVIVSTYQAV SGAGNKGIES LKNELKTALE CLEKDPTIDL NQVLQAGAFA YPIAFNAIAH IDTFKENGYT KEELKMLHET HKIMGVDFPI SATCVRVPVL RSHSESLSIA FEKEFDLKEV YEVLKNAPSV AVCDDPSHNL YPTPLKASHT DSVFIGRLRK DLFDKKTLHG FCVADQLRVG AATNALKIAL HYIKNA // ID DHPRS_HELPY Reviewed; 380 AA. AC O25830; DT 16-APR-2014, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 94. DE RecName: Full=Bifunctional dihydropteroate synthase/dihydropteroate reductase; DE Includes: DE RecName: Full=Dihydropteroate reductase {ECO:0000303|PubMed:15554970}; DE Short=DHPR {ECO:0000303|PubMed:17416665}; DE EC=1.5.8.- {ECO:0000269|PubMed:17416665}; DE Includes: DE RecName: Full=Dihydropteroate synthase {ECO:0000303|PubMed:15554970}; DE Short=DHPS {ECO:0000303|PubMed:15554970}; DE EC=2.5.1.15 {ECO:0000269|PubMed:17416665}; DE AltName: Full=Dihydropteroate pyrophosphorylase; GN Name=folP {ECO:0000303|PubMed:17416665}; GN OrderedLocusNames=C694_06360, HP_1232; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP FUNCTION. RX PubMed=15554970; DOI=10.1111/j.1365-2958.2004.04339.x; RA Levin I., Giladi M., Altman-Price N., Ortenberg R., Mevarech M.; RT "An alternative pathway for reduced folate biosynthesis in bacteria RT and halophilic archaea."; RL Mol. Microbiol. 54:1307-1318(2004). RN [4] RP FUNCTION, CATALYTIC ACTIVITY, COFACTOR, AND MUTAGENESIS OF MET-28; RP LYS-31; LYS-51; GLY-58 AND LYS-92. RX PubMed=17416665; DOI=10.1128/JB.01878-06; RA Levin I., Mevarech M., Palfey B.A.; RT "Characterization of a novel bifunctional dihydropteroate RT synthase/dihydropteroate reductase enzyme from Helicobacter pylori."; RL J. Bacteriol. 189:4062-4069(2007). CC -!- FUNCTION: Bifunctional enzyme that catalyzes the formation of CC dihydropteroate, the immediate precursor of folic acid and the CC reduction of dihydropteroate to tetrahydropteroate. CC {ECO:0000269|PubMed:15554970, ECO:0000269|PubMed:17416665}. CC -!- CATALYTIC ACTIVITY: 6-hydroxymethyl-7,8-dihydropterin diphosphate CC + 4-aminobenzoate = diphosphate + dihydropteroate. CC {ECO:0000269|PubMed:17416665}. CC -!- CATALYTIC ACTIVITY: 7,8-dihydropteroate + NADH = 5,6,7,8- CC tetrahydropteroate + NAD(+). {ECO:0000269|PubMed:17416665}. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000269|PubMed:17416665}; CC Name=FMN; Xref=ChEBI:CHEBI:58210; CC Evidence={ECO:0000269|PubMed:17416665}; CC Note=Binds 1 FAD or 1 FMN per subunit. CC {ECO:0000269|PubMed:17416665}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000250|UniProtKB:P0AC13}; CC -!- PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; CC 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8- CC dihydropteridine diphosphate and 4-aminobenzoate: step 1/2. CC -!- DOMAIN: The N-terminal extension of FolP is essential for the CC reducing activity and binds FMN. CC -!- MISCELLANEOUS: FolP can complement an E.coli strain in which the CC two distinct genes encoding dihydrofolate reductases folA and folM CC are deleted. {ECO:0000305|PubMed:17416665}. CC -!- SIMILARITY: In the C-terminal section; belongs to the DHPS family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 pterin-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00334}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08276.1; -; Genomic_DNA. DR EMBL; CP003904; AFV42447.1; -; Genomic_DNA. DR PIR; H64673; H64673. DR RefSeq; NP_208024.1; NC_000915.1. DR RefSeq; WP_000636048.1; NC_018939.1. DR ProteinModelPortal; O25830; -. DR DIP; DIP-3693N; -. DR IntAct; O25830; 1. DR MINT; MINT-170308; -. DR STRING; 85962.HP1232; -. DR PaxDb; O25830; -. DR PRIDE; O25830; -. DR EnsemblBacteria; AAD08276; AAD08276; HP_1232. DR EnsemblBacteria; AFV42447; AFV42447; C694_06360. DR GeneID; 900179; -. DR KEGG; heo:C694_06360; -. DR KEGG; hpy:HP1232; -. DR PATRIC; 20593835; VBIHelPyl33062_1288. DR eggNOG; ENOG4105EEI; Bacteria. DR eggNOG; COG0294; LUCA. DR KO; K00796; -. DR OMA; SIDTYHA; -. DR OrthoDB; EOG67T5P5; -. DR BioCyc; HPY:HP1232-MONOMER; -. DR UniPathway; UPA00077; UER00156. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004156; F:dihydropteroate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0046656; P:folic acid biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0046654; P:tetrahydrofolate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.20; -; 1. DR InterPro; IPR006390; DHP_synth. DR InterPro; IPR011005; Dihydropteroate_synth-like. DR InterPro; IPR016227; Dihydropteroate_synthase_prd. DR InterPro; IPR000489; Pterin-binding_dom. DR Pfam; PF00809; Pterin_bind; 1. DR PIRSF; PIRSF000501; DHPS_Campy_prd; 1. DR SUPFAM; SSF51717; SSF51717; 1. DR TIGRFAMs; TIGR01496; DHPS; 1. DR PROSITE; PS50972; PTERIN_BINDING; 1. PE 1: Evidence at protein level; KW Complete proteome; FAD; Flavoprotein; FMN; Folate biosynthesis; KW Magnesium; Metal-binding; Multifunctional enzyme; NAD; Oxidoreductase; KW Reference proteome; Transferase. FT CHAIN 1 380 Bifunctional dihydropteroate FT synthase/dihydropteroate reductase. FT /FTId=PRO_0000428675. FT DOMAIN 119 371 Pterin-binding. {ECO:0000255|PROSITE- FT ProRule:PRU00334}. FT REGION 1 104 Dihydropteroate reductase. FT REGION 105 380 Dihydropteroate synthase. FT REGION 359 361 6-hydroxymethyl-7,8-dihydropterin FT diphosphate binding. FT {ECO:0000250|UniProtKB:P0AC13}. FT METAL 126 126 Magnesium. FT {ECO:0000250|UniProtKB:P9WND1}. FT BINDING 202 202 6-hydroxymethyl-7,8-dihydropterin FT diphosphate. FT {ECO:0000250|UniProtKB:P0AC13}. FT BINDING 221 221 6-hydroxymethyl-7,8-dihydropterin FT diphosphate. FT {ECO:0000250|UniProtKB:P0AC13}. FT BINDING 289 289 6-hydroxymethyl-7,8-dihydropterin FT diphosphate. FT {ECO:0000250|UniProtKB:P0AC13}. FT BINDING 325 325 6-hydroxymethyl-7,8-dihydropterin FT diphosphate. FT {ECO:0000250|UniProtKB:P0AC13}. FT MUTAGEN 28 28 M->A: Unable to bind FMN. FT {ECO:0000269|PubMed:17416665}. FT MUTAGEN 31 31 K->A: Unable to bind FMN. FT {ECO:0000269|PubMed:17416665}. FT MUTAGEN 51 51 K->A: Unstable protein. FT {ECO:0000269|PubMed:17416665}. FT MUTAGEN 58 58 G->A: No effect. FT {ECO:0000269|PubMed:17416665}. FT MUTAGEN 92 92 K->E: Unable to bind FMN. FT {ECO:0000269|PubMed:17416665}. SQ SEQUENCE 380 AA; 43275 MW; 618C39DFDA39B174 CRC64; MIVKRLNPDA LKNALQKIGP EKIAQDRMHQ KGVSFVFEIQ HLPLSATLIL KQEAISVGGD FATPRDCILA KEPFYDGVLI ASAKQLERLI VKCHSQPFGL KHLAQELKSH LKAPKPNTPQ IMAVLNLTPD SFYEKSRFDS KKALEEIYQW LEKGITLIDI GAASSRPESE IIDPKIEQDR LKEILLEIKS QKLYQCAKFS IDTYHATTAQ MALEHYFSIL NDVSGFNSAE MLEVAKDYKP TCILMHTQKT PKDMQENVFY HNLFDEMDRF FKEKLEVLEK YVLQDIILDI GFGFAKLKEH NLALIKHLSH FLKFKKPLLV GASRKNTIGL ITGREVQDRL AGTLSLHLMA LQNGASVLRV HDIDEHIDLI KVFKSLEETD // ID DCD_HELPY Reviewed; 188 AA. AC O25136; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 17-FEB-2016, entry version 92. DE RecName: Full=Deoxycytidine triphosphate deaminase; DE Short=dCTP deaminase; DE EC=3.5.4.13; GN Name=dcd; OrderedLocusNames=HP_0372; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: dCTP + H(2)O = dUTP + NH(3). CC -!- PATHWAY: Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP CC (dUTP route): step 1/2. CC -!- SIMILARITY: Belongs to the dCTP deaminase family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07441.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07441.1; ALT_INIT; Genomic_DNA. DR PIR; D64566; D64566. DR RefSeq; NP_207170.1; NC_000915.1. DR RefSeq; WP_000523106.1; NC_018939.1. DR ProteinModelPortal; O25136; -. DR IntAct; O25136; 1. DR MINT; MINT-169872; -. DR STRING; 85962.HP0372; -. DR PaxDb; O25136; -. DR EnsemblBacteria; AAD07441; AAD07441; HP_0372. DR GeneID; 898857; -. DR KEGG; heo:C694_01890; -. DR KEGG; hpy:HP0372; -. DR PATRIC; 20591981; VBIHelPyl33062_0384. DR eggNOG; ENOG4105DHP; Bacteria. DR eggNOG; COG0717; LUCA. DR KO; K01494; -. DR OMA; MEYFRIP; -. DR OrthoDB; EOG67DPKR; -. DR UniPathway; UPA00610; UER00665. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008829; F:dCTP deaminase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006226; P:dUMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006229; P:dUTP biosynthetic process; IEA:InterPro. DR GO; GO:0009220; P:pyrimidine ribonucleotide biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 2.70.40.10; -; 1. DR HAMAP; MF_00146; dCTP_deaminase; 1. DR InterPro; IPR011962; dCTP_deam. DR InterPro; IPR029054; dUTPase-like. DR InterPro; IPR008180; dUTPase/dCTP_deaminase. DR Pfam; PF00692; dUTPase; 1. DR SUPFAM; SSF51283; SSF51283; 1. DR TIGRFAMs; TIGR02274; dCTP_deam; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Nucleotide metabolism; KW Reference proteome. FT CHAIN 1 188 Deoxycytidine triphosphate deaminase. FT /FTId=PRO_0000155990. SQ SEQUENCE 188 AA; 20904 MW; F45AEE3C3F040876 CRC64; MGLKADSWIK KMSLEHGMIS PFCEKQVGKN VISYGLSSYG YDIRVGSEFM LFDNKNALID PKNFDPNNAT KIDASKEGYF ILPANAFALA HTIEYFKMPK DTLAICLGKS TYARCGIIVN VTPFEPEFEG YITIEISNTT NLPAKVYANE GIAQVVFLQG DEMCEQSYKD RGGKYQGQVG ITLPKILK // ID DDL_HELPY Reviewed; 347 AA. AC P56191; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=D-alanine--D-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00047}; DE EC=6.3.2.4 {ECO:0000255|HAMAP-Rule:MF_00047}; DE AltName: Full=D-Ala-D-Ala ligase {ECO:0000255|HAMAP-Rule:MF_00047}; DE AltName: Full=D-alanylalanine synthetase {ECO:0000255|HAMAP-Rule:MF_00047}; GN Name=ddl {ECO:0000255|HAMAP-Rule:MF_00047}; Synonyms=ddlA; GN OrderedLocusNames=HP_0738; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. {ECO:0000255|HAMAP-Rule:MF_00047}. CC -!- CATALYTIC ACTIVITY: ATP + 2 D-alanine = ADP + phosphate + D- CC alanyl-D-alanine. {ECO:0000255|HAMAP-Rule:MF_00047}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 2 magnesium or manganese ions per subunit. CC {ECO:0000250}; CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00047}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00047}. CC -!- SIMILARITY: Belongs to the D-alanine--D-alanine ligase family. CC {ECO:0000255|HAMAP-Rule:MF_00047}. CC -!- SIMILARITY: Contains 1 ATP-grasp domain. {ECO:0000255|HAMAP- CC Rule:MF_00047}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07784.1; -; Genomic_DNA. DR PIR; B64612; B64612. DR RefSeq; NP_207532.1; NC_000915.1. DR RefSeq; WP_000393659.1; NC_018939.1. DR PDB; 2PVP; X-ray; 2.40 A; A/B=1-347. DR PDBsum; 2PVP; -. DR ProteinModelPortal; P56191; -. DR SMR; P56191; 1-328. DR IntAct; P56191; 1. DR STRING; 85962.HP0738; -. DR PaxDb; P56191; -. DR PRIDE; P56191; -. DR EnsemblBacteria; AAD07784; AAD07784; HP_0738. DR GeneID; 899019; -. DR KEGG; heo:C694_03790; -. DR KEGG; hpy:HP0738; -. DR PATRIC; 20592763; VBIHelPyl33062_0770. DR eggNOG; ENOG4105CPF; Bacteria. DR eggNOG; COG1181; LUCA. DR KO; K01921; -. DR OMA; LEFYRIA; -. DR OrthoDB; EOG6ND0KB; -. DR BioCyc; HPY:HP0738-MONOMER; -. DR UniPathway; UPA00219; -. DR EvolutionaryTrace; P56191; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008716; F:D-alanine-D-alanine ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 2. DR Gene3D; 3.40.50.20; -; 1. DR HAMAP; MF_00047; Dala_Dala_lig; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR000291; D-Ala_lig_Van_CS. DR InterPro; IPR005905; D_ala_D_ala. DR InterPro; IPR011095; Dala_Dala_lig_C. DR InterPro; IPR011127; Dala_Dala_lig_N. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF07478; Dala_Dala_lig_C; 1. DR Pfam; PF01820; Dala_Dala_lig_N; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR01205; D_ala_D_alaTIGR; 1. DR PROSITE; PS50975; ATP_GRASP; 1. DR PROSITE; PS00843; DALA_DALA_LIGASE_1; 1. DR PROSITE; PS00844; DALA_DALA_LIGASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; KW Peptidoglycan synthesis; Reference proteome. FT CHAIN 1 347 D-alanine--D-alanine ligase. FT /FTId=PRO_0000177830. FT DOMAIN 134 332 ATP-grasp. {ECO:0000255|HAMAP- FT Rule:MF_00047}. FT NP_BIND 161 216 ATP. {ECO:0000255|HAMAP-Rule:MF_00047}. FT METAL 288 288 Magnesium or manganese 1. FT {ECO:0000255|HAMAP-Rule:MF_00047}. FT METAL 300 300 Magnesium or manganese 1. FT {ECO:0000255|HAMAP-Rule:MF_00047}. FT METAL 300 300 Magnesium or manganese 2. FT {ECO:0000255|HAMAP-Rule:MF_00047}. FT METAL 302 302 Magnesium or manganese 2. FT {ECO:0000255|HAMAP-Rule:MF_00047}. SQ SEQUENCE 347 AA; 39736 MW; 5F19D9CEE4AE08CF CRC64; MEFCVLFGGA SFEHEISIVS AIALKGVLKD RIKYFIFLDE NHHFYLIEES NMHSKYFAQI KEKKLPPLIL THNGLLKNSF LGAKIIELPL VINLVHGGDG EDGKLASLLE FYRIAFIGPR IEASVLSYNK YLTKLYAKDL GVKTLDHVLL NEKNRANALD LMNFNFPFII KPNNAGSSLG VNVVKEEKEL VYALDGAFEY SKEVLIEPFI QGVKEYNLAG CKIKKDFCFS YVEEPNKQEF LDFKQKYLDF SRNKAPKANL SNALEEQLKE NFKKLYNDLF DGAIIRCDFF VIKNEVYLNE INPIPGSLAN YLFDDFKTTL ENLAQSLPKT PKIQIKNSYL LQIQKNK // ID DNAG_HELPY Reviewed; 559 AA. AC P56064; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=DNA primase {ECO:0000255|HAMAP-Rule:MF_00974}; DE EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00974}; GN Name=dnaG {ECO:0000255|HAMAP-Rule:MF_00974}; GN OrderedLocusNames=HP_0012; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS) OF 413-559. RX PubMed=23585534; DOI=10.1128/JB.00091-13; RA Abdul Rehman S.A., Verma V., Mazumder M., Dhar S.K., Gourinath S.; RT "Crystal structure and mode of helicase binding of the C-terminal RT domain of primase from Helicobacter pylori."; RL J. Bacteriol. 195:2826-2838(2013). CC -!- FUNCTION: RNA polymerase that catalyzes the synthesis of short RNA CC molecules used as primers for DNA polymerase during DNA CC replication. {ECO:0000255|HAMAP-Rule:MF_00974}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00974}; CC Note=Binds 1 zinc ion per monomer. {ECO:0000255|HAMAP- CC Rule:MF_00974}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00974}; CC Note=Binds two Mg(2+) per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00974}; CC -!- SUBUNIT: Monomer. Interacts with DnaB. {ECO:0000255|HAMAP- CC Rule:MF_00974}. CC -!- DOMAIN: Contains an N-terminal zinc-binding domain, a central core CC domain that contains the primase activity, and a C-terminal DnaB- CC binding domain. {ECO:0000255|HAMAP-Rule:MF_00974}. CC -!- SIMILARITY: Belongs to the DnaG primase family. CC {ECO:0000255|HAMAP-Rule:MF_00974}. CC -!- SIMILARITY: Contains 1 Toprim domain. {ECO:0000255|HAMAP- CC Rule:MF_00974}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07082.1; -; Genomic_DNA. DR PIR; D64521; D64521. DR RefSeq; NP_206814.1; NC_000915.1. DR RefSeq; WP_000601638.1; NC_018939.1. DR PDB; 4EHS; X-ray; 1.78 A; A/B=413-559. DR PDBsum; 4EHS; -. DR ProteinModelPortal; P56064; -. DR DIP; DIP-3301N; -. DR IntAct; P56064; 9. DR MINT; MINT-181460; -. DR STRING; 85962.HP0012; -. DR PaxDb; P56064; -. DR PRIDE; P56064; -. DR EnsemblBacteria; AAD07082; AAD07082; HP_0012. DR GeneID; 899091; -. DR KEGG; heo:C694_00055; -. DR KEGG; hpy:HP0012; -. DR PATRIC; 20591217; VBIHelPyl33062_0010. DR eggNOG; ENOG4105C9G; Bacteria. DR eggNOG; COG0358; LUCA. DR KO; K02316; -. DR OMA; EYDKGAY; -. DR OrthoDB; EOG6XDGTR; -. DR BioCyc; HPY:HP0012-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003896; F:DNA primase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.580.10; -; 1. DR Gene3D; 3.90.980.10; -; 1. DR HAMAP; MF_00974; DNA_primase_DnaG; 1. DR InterPro; IPR013264; DNA_primase_core_N. DR InterPro; IPR006295; DNA_primase_DnaG. DR InterPro; IPR030846; DnaG_bac. DR InterPro; IPR031988; DnaG_HBD. DR InterPro; IPR006171; Toprim_domain. DR InterPro; IPR002694; Znf_CHC2. DR Pfam; PF16730; DnaGprimase_HBD; 1. DR Pfam; PF13662; Toprim_4; 1. DR Pfam; PF08275; Toprim_N; 1. DR Pfam; PF01807; zf-CHC2; 1. DR PIRSF; PIRSF002811; DnaG; 1. DR SMART; SM00493; TOPRIM; 1. DR SMART; SM00400; ZnF_CHCC; 1. DR TIGRFAMs; TIGR01391; dnaG; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA replication; DNA-binding; KW DNA-directed RNA polymerase; Magnesium; Metal-binding; KW Nucleotidyltransferase; Primosome; Reference proteome; Transcription; KW Transferase; Zinc; Zinc-finger. FT CHAIN 1 559 DNA primase. FT /FTId=PRO_0000180495. FT DOMAIN 246 327 Toprim. {ECO:0000255|HAMAP- FT Rule:MF_00974}. FT ZN_FING 37 61 CHC2-type. {ECO:0000255|HAMAP- FT Rule:MF_00974}. FT METAL 252 252 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_00974}. FT METAL 296 296 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_00974}. FT METAL 296 296 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00974}. FT METAL 298 298 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00974}. FT HELIX 442 455 {ECO:0000244|PDB:4EHS}. FT HELIX 457 463 {ECO:0000244|PDB:4EHS}. FT TURN 464 466 {ECO:0000244|PDB:4EHS}. FT HELIX 469 471 {ECO:0000244|PDB:4EHS}. FT HELIX 476 483 {ECO:0000244|PDB:4EHS}. FT HELIX 490 497 {ECO:0000244|PDB:4EHS}. FT HELIX 508 529 {ECO:0000244|PDB:4EHS}. FT HELIX 534 552 {ECO:0000244|PDB:4EHS}. SQ SEQUENCE 559 AA; 63723 MW; E5EB7F2F0BB38170 CRC64; MILKSSIDRL LQTIDIVEVI SSYVNLRKSG SSYMACCPFH EERSASFSVN QIKGFYHCFG CGASGDSIKF VMAFEKLSFV EALEKLAHRF NIVLEYDKGV YYDHKEDYHL LEMVSSLYQE ELFNAPFFLN YLQKRGLSLE SIKAFKLGLC TNRIDYGIEN KGLNKDKLIE LGVLGKSDND QKTYLRFLDR IMFPIYSPSA QVVGFGGRTL KEKAAKYINS PQSKLFDKSS LLYGYHLAKE HIYKQKQVIV TEGYLDVILL HQAGFKNAIA TLGTALTPSH LPLLKKGDPE ILLSYDGDKA GRNAAYKASL MLAKEQRRGG VILFENNLDP ADMIANGQIE TLKNWLSHPM AFIEFVLRRM ADSYLLDDPL EKDKALKEML GFLKNFSLLL QSEYKPLIAT LLQAPLHVLG IRERVSFQPF YPKTEKPNRP QRFAHVSSAP SLEFLEKLVI RYLLEDRSLL DLAVGYIHSG VFLHKKQEFD ALCQEKLDDP KLVALLLDAN LPLKKGGFEK ELRLLILRYF ERQLKEIPKS SLPFSEKMIC LKKARQAIMK LKQGELVAI // ID DEOB_HELPY Reviewed; 413 AA. AC P56195; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Phosphopentomutase {ECO:0000255|HAMAP-Rule:MF_00740}; DE EC=5.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00740}; DE AltName: Full=Phosphodeoxyribomutase {ECO:0000255|HAMAP-Rule:MF_00740}; GN Name=deoB {ECO:0000255|HAMAP-Rule:MF_00740}; GN OrderedLocusNames=HP_1179; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Phosphotransfer between the C1 and C5 carbon atoms of CC pentose. {ECO:0000255|HAMAP-Rule:MF_00740}. CC -!- CATALYTIC ACTIVITY: Alpha-D-ribose 1-phosphate = D-ribose 5- CC phosphate. {ECO:0000255|HAMAP-Rule:MF_00740}. CC -!- CATALYTIC ACTIVITY: 2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy- CC alpha-D-ribose 5-phosphate. {ECO:0000255|HAMAP-Rule:MF_00740}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00740}; CC Note=Binds 1 or 2 manganese ions. {ECO:0000255|HAMAP- CC Rule:MF_00740}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; 5-phospho-alpha-D- CC ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1- CC diphosphate from D-ribose 5-phosphate (route II): step 1/3. CC {ECO:0000255|HAMAP-Rule:MF_00740}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00740}. CC -!- SIMILARITY: Belongs to the phosphopentomutase family. CC {ECO:0000255|HAMAP-Rule:MF_00740}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08223.1; -; Genomic_DNA. DR PIR; C64667; C64667. DR RefSeq; NP_207970.1; NC_000915.1. DR RefSeq; WP_001172180.1; NC_018939.1. DR ProteinModelPortal; P56195; -. DR STRING; 85962.HP1179; -. DR PaxDb; P56195; -. DR PRIDE; P56195; -. DR EnsemblBacteria; AAD08223; AAD08223; HP_1179. DR GeneID; 899939; -. DR KEGG; heo:C694_06095; -. DR KEGG; hpy:HP1179; -. DR PATRIC; 20593711; VBIHelPyl33062_1234. DR eggNOG; ENOG4105CZG; Bacteria. DR eggNOG; COG1015; LUCA. DR KO; K01839; -. DR OMA; YLGNCHA; -. DR OrthoDB; EOG6R5C7J; -. DR BioCyc; HPY:HP1179-MONOMER; -. DR UniPathway; UPA00087; UER00173. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008973; F:phosphopentomutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006015; P:5-phosphoribose 1-diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0043094; P:cellular metabolic compound salvage; IEA:InterPro. DR GO; GO:0009264; P:deoxyribonucleotide catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.1250; -; 1. DR Gene3D; 3.40.720.10; -; 2. DR HAMAP; MF_00740; Phosphopentomut; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR010045; DeoB. DR InterPro; IPR006124; Metalloenzyme. DR InterPro; IPR024052; Phosphopentomutase_DeoB_cap. DR Pfam; PF01676; Metalloenzyme; 1. DR PIRSF; PIRSF001491; Ppentomutase; 1. DR SUPFAM; SSF143856; SSF143856; 1. DR SUPFAM; SSF53649; SSF53649; 2. DR TIGRFAMs; TIGR01696; deoB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Isomerase; Manganese; Metal-binding; KW Reference proteome. FT CHAIN 1 413 Phosphopentomutase. FT /FTId=PRO_0000199824. FT METAL 11 11 Manganese. {ECO:0000255|HAMAP- FT Rule:MF_00740}. FT METAL 311 311 Manganese. {ECO:0000255|HAMAP- FT Rule:MF_00740}. FT METAL 347 347 Manganese. {ECO:0000255|HAMAP- FT Rule:MF_00740}. FT METAL 348 348 Manganese. {ECO:0000255|HAMAP- FT Rule:MF_00740}. FT METAL 359 359 Manganese. {ECO:0000255|HAMAP- FT Rule:MF_00740}. SQ SEQUENCE 413 AA; 46180 MW; 98D738630BAE6088 CRC64; MQKRVVILLL DSFGIGASED AKDFGDLGAN TLGNIAKACF NNLADSNDRS GALKLPYLES LGLGLSALKA ANELPLGFQS QPNLIGAYAY AQELSSAKDT ISGHWEMMGA PVLFEWGYFK DKTHSFPKEI LDEIVRKTKI KGYLGNCHAS GTEIIKDLGE KHLETLYPIF YTSADSVFQI AAHEERFGLD NLYALCEEAF QILEPLKIAR VIARPFIGTN RESFKRTANR KDYAIKPHKK LLFETFIEEK RGEVISIGKI ADIYAHVGIT QKFKAGSLME LCDVTLEQVK NAKNNSLIFT NFVHFDSDYG HRRDISGYAN ALEYFDARLK EVLENLREND LLILCADHGC DPSFKGTDHT REYIPVLFYH KDLQPAFLGK SESFADIGQS IAHFLGLSPL DYGKNLLNFK GQP // ID DNLJ_HELPY Reviewed; 656 AA. AC O25336; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 111. DE RecName: Full=DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588}; DE EC=6.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01588}; DE AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000255|HAMAP-Rule:MF_01588}; GN Name=ligA {ECO:0000255|HAMAP-Rule:MF_01588}; Synonyms=lig; GN OrderedLocusNames=HP_0615; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA ligase that catalyzes the formation of CC phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl CC groups in double-stranded DNA using NAD as a coenzyme and as the CC energy source for the reaction. It is essential for DNA CC replication and repair of damaged DNA. {ECO:0000255|HAMAP- CC Rule:MF_01588}. CC -!- CATALYTIC ACTIVITY: NAD(+) + (deoxyribonucleotide)(n) + CC (deoxyribonucleotide)(m) = AMP + beta-nicotinamide D- CC ribonucleotide + (deoxyribonucleotide)(n+m). {ECO:0000255|HAMAP- CC Rule:MF_01588}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01588}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01588}; CC -!- SIMILARITY: Belongs to the NAD-dependent DNA ligase family. LigA CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01588}. CC -!- SIMILARITY: Contains 1 BRCT domain. {ECO:0000255|HAMAP- CC Rule:MF_01588}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07680.1; -; Genomic_DNA. DR PIR; G64596; G64596. DR RefSeq; NP_207410.1; NC_000915.1. DR RefSeq; WP_000597558.1; NC_018939.1. DR ProteinModelPortal; O25336; -. DR DIP; DIP-3062N; -. DR IntAct; O25336; 5. DR MINT; MINT-168685; -. DR STRING; 85962.HP0615; -. DR PaxDb; O25336; -. DR PRIDE; O25336; -. DR EnsemblBacteria; AAD07680; AAD07680; HP_0615. DR GeneID; 900023; -. DR KEGG; heo:C694_03180; -. DR KEGG; hpy:HP0615; -. DR PATRIC; 20592509; VBIHelPyl33062_0643. DR eggNOG; ENOG4105C77; Bacteria. DR eggNOG; COG0272; LUCA. DR KO; K01972; -. DR OMA; YITKENF; -. DR OrthoDB; EOG6TTVM9; -. DR BioCyc; HPY:HP0615-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003911; F:DNA ligase (NAD+) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.40.50.10190; -; 1. DR HAMAP; MF_01588; DNA_ligase_A; 1. DR InterPro; IPR001357; BRCT_dom. DR InterPro; IPR018239; DNA_ligase_AS. DR InterPro; IPR033136; DNA_ligase_CS. DR InterPro; IPR001679; DNAligase. DR InterPro; IPR013839; DNAligase_adenylation. DR InterPro; IPR013840; DNAligase_N. DR InterPro; IPR003583; Hlx-hairpin-Hlx_DNA-bd_motif. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004150; NAD_DNA_ligase_OB. DR InterPro; IPR010994; RuvA_2-like. DR Pfam; PF00533; BRCT; 1. DR Pfam; PF01653; DNA_ligase_aden; 1. DR Pfam; PF03120; DNA_ligase_OB; 1. DR PIRSF; PIRSF001604; LigA; 1. DR SMART; SM00292; BRCT; 1. DR SMART; SM00278; HhH1; 3. DR SMART; SM00532; LIGANc; 1. DR SUPFAM; SSF47781; SSF47781; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF52113; SSF52113; 1. DR TIGRFAMs; TIGR00575; dnlj; 1. DR PROSITE; PS50172; BRCT; 1. DR PROSITE; PS01055; DNA_LIGASE_N1; 1. DR PROSITE; PS01056; DNA_LIGASE_N2; 1. PE 3: Inferred from homology; KW Complete proteome; DNA damage; DNA repair; DNA replication; Ligase; KW Magnesium; Manganese; Metal-binding; NAD; Reference proteome; Zinc. FT CHAIN 1 656 DNA ligase. FT /FTId=PRO_0000161747. FT DOMAIN 577 656 BRCT. {ECO:0000255|HAMAP-Rule:MF_01588}. FT NP_BIND 32 36 NAD. {ECO:0000255|HAMAP-Rule:MF_01588}. FT NP_BIND 81 82 NAD. {ECO:0000255|HAMAP-Rule:MF_01588}. FT ACT_SITE 112 112 N6-AMP-lysine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01588}. FT METAL 400 400 Zinc. {ECO:0000255|HAMAP-Rule:MF_01588}. FT METAL 403 403 Zinc. {ECO:0000255|HAMAP-Rule:MF_01588}. FT METAL 416 416 Zinc. {ECO:0000255|HAMAP-Rule:MF_01588}. FT METAL 421 421 Zinc. {ECO:0000255|HAMAP-Rule:MF_01588}. FT BINDING 133 133 NAD. {ECO:0000255|HAMAP-Rule:MF_01588}. FT BINDING 167 167 NAD. {ECO:0000255|HAMAP-Rule:MF_01588}. FT BINDING 306 306 NAD. {ECO:0000255|HAMAP-Rule:MF_01588}. SQ SEQUENCE 656 AA; 73900 MW; A844F21C10057174 CRC64; MIKSQKEYLE RIAYLNTLSH HYYNLDEPIV SDAIYDELYQ ELKAYEEKNP NGIQANSPTQ KVGATTTNSF NKNPHLMRMW SLDDVFNQSE LQAWLQRILK AYPSASFVCS PKLDGVSLNL LYQHGKLVKA TTRGNGLEGE LVSANAKHIA NIPHAIAYNG EIEIRGEVII SKKDFDALNQ ERLNANEPLF ANPRNAASGS LRQLDSEITK KRKLQFIPWG VGKHSLNFLS FKECLDFIVS LGFSAIQYLS LNKNHQEIED NYHTLIRERE GFFALLDGMV IVVNELNIQK ELGYTQKSPK FACAYKFPAL EKHTKIVGVI NQVGRSGAIT PVALLEPVEI AGAMINRATL HNYSEIEKKN IMLSDRVVVI RSGDVIPKII KPLESYRDGS QHKIERPKVC PICSHELLCE EIFTYCQNLN CPARLKESLI HFASKDALNI QGLGDKVIEQ LFEEKLIFNA LDLYALKLED LMRLDKFKIK KAQNLLDAIL KSKNPPLWRL INALGIEHIG KGASKTLAKY GLNVLEKSEA EFLEMEGFGV EMARSLVNFY ASNQEFIRSL FELLNPKNSD MAEEKQKSSS VFNNKTIVLT GTLSKPRQEY AQMLENLGAK ISSSVSAKTD FLIAGENPGS KLALAQKHGV SVLNEEELLK RLKELD // ID DNAK_HELPY Reviewed; 620 AA. AC P55994; O05733; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 11-NOV-2015, entry version 103. DE RecName: Full=Chaperone protein DnaK; DE AltName: Full=HSP70; DE AltName: Full=Heat shock 70 kDa protein; DE AltName: Full=Heat shock protein 70; GN Name=dnaK; OrderedLocusNames=HP_0109; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=9712748; RA Huesca M., Goodwin A., Bhagwansingh A., Hoffman P., Lingwood C.A.; RT "Characterization of an acidic-pH-inducible stress protein (hsp70), a RT putative sulfatide binding adhesin, from Helicobacter pylori."; RL Infect. Immun. 66:4061-4067(1998). CC -!- FUNCTION: Acts as a chaperone. {ECO:0000250}. CC -!- INDUCTION: By stress conditions e.g. heat shock (By similarity). CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the heat shock protein 70 family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07178.1; -; Genomic_DNA. DR EMBL; U96271; AAB53800.1; -; Genomic_DNA. DR PIR; E64533; E64533. DR RefSeq; NP_206909.1; NC_000915.1. DR RefSeq; WP_000521014.1; NC_018939.1. DR ProteinModelPortal; P55994; -. DR SMR; P55994; 1-596. DR DIP; DIP-3190N; -. DR IntAct; P55994; 9. DR MINT; MINT-161980; -. DR STRING; 85962.HP0109; -. DR PaxDb; P55994; -. DR PRIDE; P55994; -. DR EnsemblBacteria; AAD07178; AAD07178; HP_0109. DR GeneID; 900161; -. DR KEGG; heo:C694_00540; -. DR KEGG; hpy:HP0109; -. DR PATRIC; 20591433; VBIHelPyl33062_0116. DR eggNOG; ENOG4105CFG; Bacteria. DR eggNOG; COG0443; LUCA. DR KO; K04043; -. DR OMA; KLDCPAQ; -. DR OrthoDB; EOG6JMMSV; -. DR BioCyc; HPY:HP0109-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 1.20.1270.10; -; 1. DR Gene3D; 2.60.34.10; -; 1. DR HAMAP; MF_00332; DnaK; 1. DR InterPro; IPR012725; Chaperone_DnaK. DR InterPro; IPR018181; Heat_shock_70_CS. DR InterPro; IPR029048; HSP70_C. DR InterPro; IPR029047; HSP70_peptide-bd. DR InterPro; IPR013126; Hsp_70_fam. DR Pfam; PF00012; HSP70; 1. DR PRINTS; PR00301; HEATSHOCK70. DR SUPFAM; SSF100920; SSF100920; 1. DR SUPFAM; SSF100934; SSF100934; 1. DR TIGRFAMs; TIGR02350; prok_dnaK; 1. DR PROSITE; PS00297; HSP70_1; 1. DR PROSITE; PS00329; HSP70_2; 1. DR PROSITE; PS01036; HSP70_3; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Complete proteome; Nucleotide-binding; KW Phosphoprotein; Reference proteome; Stress response. FT INIT_MET 1 1 Removed. {ECO:0000250}. FT CHAIN 2 620 Chaperone protein DnaK. FT /FTId=PRO_0000078470. FT MOD_RES 197 197 Phosphothreonine; by autocatalysis. FT {ECO:0000250}. FT CONFLICT 26 29 IIAN -> DLLRI (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 108 108 V -> I (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 151 151 K -> Q (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 155 155 E -> D (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 177 177 A -> L (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 307 308 MK -> VE (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 316 316 S -> G (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 354 354 D -> E (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 417 417 S -> SS (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 430 435 VSIMVL -> GVPYGF (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 502 507 SDSEIE -> TIAK (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 522 522 K -> R (in Ref. 2; AAB53800). FT {ECO:0000305}. FT CONFLICT 570 580 VKNDNATKAEL -> IKTITLLKRI (in Ref. 2; FT AAB53800). {ECO:0000305}. FT CONFLICT 586 600 LLAQAAQKLGEAMAN -> ALKGSKIRRNGE (in Ref. FT 2). {ECO:0000305}. SQ SEQUENCE 620 AA; 67052 MW; 8C5E42ECC0558481 CRC64; MGKVIGIDLG TTNSAMAVYE GNEAKIIANK EGKNTTPSIV AFTDKGEILV GESAKRQAVT NPEKTIYSIK RIMGLMFNED KAKEAEKRLP YKIVDRNGAC AIEISGKVYT PQEISAKILM KLKEDAESYL GESVTEAVIT VPAYFNDSQR KATKEAGTIA GLNVLRIINE PTSAALAYGL DKKESEKIMV YDLGGGTFDV TVLETGDNVV EVLATGGDAF LGGDDFDNRV IDFLASEFKS ETGIEIKNDV MALQRLKEAA ENAKKELSSA METEINLPFI TADATGPKHL VKKLTRAKFE SLTEDLMKET ISKIESVIKD AGLTKNEISE VVMVGGSTRI PKVQERVKAF INKDLNKSVN PDEVVAVGAS IQGGVLKGDV KDVLLLDVTP LSLGIETLGG VMTKVIDRGT TIPAKKSQVF STAEDNQPAV SIMVLQGERE LARDNKSLGK FDLQGIAPAP RGVPQIEVTF DIDANGILTV SAQDKNTGKS QEIKISGSSG LSDSEIEKMV KDAELHKEED AKKKEVIEAR NHADSLAHQT QKSLDEHKTN LNENDANEIQ NAINALKDCV KNDNATKAEL EDKTKLLAQA AQKLGEAMAN KNNAEQPKKK DDDVIDAEVE // ID DPO3A_HELPY Reviewed; 1211 AA. AC P56157; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=DNA polymerase III subunit alpha; DE EC=2.7.7.7; GN Name=dnaE; OrderedLocusNames=HP_1460; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA polymerase III is a complex, multichain enzyme CC responsible for most of the replicative synthesis in bacteria. CC This DNA polymerase also exhibits 3' to 5' exonuclease activity. CC The alpha chain is the DNA polymerase (By similarity). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). CC -!- SUBUNIT: DNA polymerase III contains a core (composed of alpha, CC epsilon and theta chains) that associates with a tau subunit. This CC core dimerizes to form the PolIII' complex. PolIII' associates CC with the gamma complex (composed of gamma, delta, delta', psi and CC chi chains) and with the beta chain to form the complete DNA CC polymerase III complex (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the DNA polymerase type-C family. DnaE CC subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08502.1; -; Genomic_DNA. DR PIR; D64702; D64702. DR RefSeq; NP_208251.1; NC_000915.1. DR RefSeq; WP_000662171.1; NC_018939.1. DR ProteinModelPortal; P56157; -. DR DIP; DIP-3526N; -. DR IntAct; P56157; 3. DR MINT; MINT-169116; -. DR STRING; 85962.HP1460; -. DR PaxDb; P56157; -. DR PRIDE; P56157; -. DR EnsemblBacteria; AAD08502; AAD08502; HP_1460. DR GeneID; 899833; -. DR KEGG; heo:C694_07560; -. DR KEGG; hpy:HP1460; -. DR PATRIC; 20594331; VBIHelPyl33062_1534. DR eggNOG; ENOG4105C0B; Bacteria. DR eggNOG; COG0587; LUCA. DR KO; K02337; -. DR OMA; DFCMDGR; -. DR OrthoDB; EOG6CZQGR; -. DR BioCyc; HPY:HP1460-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR InterPro; IPR011708; DNA_pol3_alpha. DR InterPro; IPR029460; DNAPol_HHH. DR InterPro; IPR004013; PHP_dom. DR InterPro; IPR003141; Pol/His_phosphatase_N. DR InterPro; IPR016195; Pol/histidinol_Pase-like. DR InterPro; IPR004805; PolC_alpha. DR Pfam; PF07733; DNA_pol3_alpha; 1. DR Pfam; PF14579; HHH_6; 1. DR Pfam; PF02811; PHP; 1. DR SMART; SM00481; POLIIIAc; 1. DR SUPFAM; SSF89550; SSF89550; 1. DR TIGRFAMs; TIGR00594; polc; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; DNA replication; KW DNA-directed DNA polymerase; Nucleotidyltransferase; KW Reference proteome; Transferase. FT CHAIN 1 1211 DNA polymerase III subunit alpha. FT /FTId=PRO_0000103323. SQ SEQUENCE 1211 AA; 138053 MW; FB248DD47E4CBB0C CRC64; MKENKAFTHL HLHTEYSLLD GANKIKILAK RVKELGMKSV SVTDHGNMFG AIDFYTSMKK EGIKPIIGME AYIHNDDNLS SKETKQRFHL CLFAKNQEGY ENLMFLSSMA YLEGFYYFPR INKKLLKEHS KGIIASSACL QGEVNYHLNT NNERNRKYGA KGYDEAKKIA CEYQEIFEDD FYLEIMRHGI LDQRFIDEQV IKMSLETGLK IIATNDTHYT MPNDAKAQEV AMCVAMGKTL NDKGRLKHSV HEFYIKSPEE MAKLFADIPE ALENTQEIAD KCVLEIDLKD DKKNPPTPPS FKFTKAYAQN EGLNFEDDAS YFAYKAREGL KERLVLVPKE KHDQYKERLE KEIEVITNMK FPGYMLIVWD FIRYAKEMGI PVGPGRGSAA GSLVAFALKI TDIDPLKYDL LFERFLNPER ISMPDIDTDF CQRRRKEIIE YMIEKYGKYN VAQVITFNKM LAKGVIRDVA RVLDMPYKEA DDFAKLIPNR LGITLKGYEK NGEFIEGAWE LEPKIKELVE SNELAKQVWE YSLNLENLNR NAGVHAAALV VDSQKELWHK TPLFASEKTG GIVTQYSMKY LEPVDLIKFD FLGLKTLTVI DDALKIIKTQ HKISVDFLSL DMDDPKVYKT IQSGDTVGIF QIESGMFQGL NKRLRPSSFE DIIAIIALGR PGPMESGMVD DFVNRKHGVE PIAYAFKELE PILKPTYGTI VYQEQVMQIV QTIGGFSLGE ADLIRRAMGK KDAQIMADNK AKFVEGAKNL GHDGQKAANL WDLIVKFAGY GFNKSHSAAY AMITFQTAYL KTYYKHEFMA AMLTSESNKI ESVARYIDEV RALEIEVMPP HINSSMQDFS VAEFKNQKGE LEKKIVFGLG AIKGVGGEPI KNIIEERAKG DYKSLEDFIS RVDFSKLTKK SLEPLVKSGS LDNLGYTRKT MLANLDLICD AGRAKDKANE MMQGGNSLFG AMEGGTKEQV VLDMIDLGEH DAKTLLECEY ETLGIHVSGN PLDEFKEEIK GFKNLVKSID IEELEIGSQA YLLGKIMEVK KKIGKRSGKP YGIADILDRY GKFELMLFEK QLNALEELDI NKPLVFKCKI EEQEEVVRLR LFEILDLESA REVKIPKARY KDPEKQKEEV REIPPMEMLA SSSCSLAIVL ENDVKKEFLR QIKESALKHQ GKRPLYLIIK DKDKQFKIQS DLMVNEKIKD DFKGLEWRDL A // ID DER_HELPY Reviewed; 458 AA. AC O25505; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 100. DE RecName: Full=GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; DE AltName: Full=GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; GN Name=der {ECO:0000255|HAMAP-Rule:MF_00195}; Synonyms=engA; GN OrderedLocusNames=HP_0834; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: GTPase that plays an essential role in the late steps of CC ribosome biogenesis. {ECO:0000255|HAMAP-Rule:MF_00195}. CC -!- SUBUNIT: Associates with the 50S ribosomal subunit. CC {ECO:0000255|HAMAP-Rule:MF_00195}. CC -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- CC like GTPase superfamily. EngA (Der) GTPase family. CC {ECO:0000255|HAMAP-Rule:MF_00195}. CC -!- SIMILARITY: Contains 2 EngA-type G (guanine nucleotide-binding) CC domains. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 KH-like domain. {ECO:0000255|HAMAP- CC Rule:MF_00195}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07883.1; -; Genomic_DNA. DR PIR; B64624; B64624. DR RefSeq; NP_207627.1; NC_000915.1. DR RefSeq; WP_001097820.1; NC_018939.1. DR ProteinModelPortal; O25505; -. DR DIP; DIP-3386N; -. DR IntAct; O25505; 2. DR MINT; MINT-161131; -. DR STRING; 85962.HP0834; -. DR PaxDb; O25505; -. DR PRIDE; O25505; -. DR EnsemblBacteria; AAD07883; AAD07883; HP_0834. DR GeneID; 900186; -. DR KEGG; heo:C694_04275; -. DR KEGG; hpy:HP0834; -. DR PATRIC; 20592959; VBIHelPyl33062_0868. DR eggNOG; ENOG4105DKZ; Bacteria. DR eggNOG; COG1160; LUCA. DR KO; K03977; -. DR OMA; WDIRYAP; -. DR OrthoDB; EOG6DC6K1; -. DR BioCyc; HPY:HP0834-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW. DR Gene3D; 3.30.300.20; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00195; GTPase_Der; 1. DR InterPro; IPR031166; G_ENGA. DR InterPro; IPR016484; GTP-bd_EngA. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR032859; KH_dom-like. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR Pfam; PF14714; KH_dom-like; 1. DR Pfam; PF01926; MMR_HSR1; 2. DR PIRSF; PIRSF006485; GTP-binding_EngA; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 2. DR TIGRFAMs; TIGR03594; GTPase_EngA; 1. DR TIGRFAMs; TIGR00231; small_GTP; 2. DR PROSITE; PS51712; G_ENGA; 2. PE 3: Inferred from homology; KW Complete proteome; GTP-binding; Nucleotide-binding; KW Reference proteome; Repeat; Ribosome biogenesis. FT CHAIN 1 458 GTPase Der. FT /FTId=PRO_0000179000. FT DOMAIN 9 171 EngA-type G 1. FT DOMAIN 197 368 EngA-type G 2. FT DOMAIN 369 453 KH-like. {ECO:0000255|HAMAP- FT Rule:MF_00195}. FT NP_BIND 15 22 GTP 1. {ECO:0000255|HAMAP-Rule:MF_00195}. FT NP_BIND 62 66 GTP 1. {ECO:0000255|HAMAP-Rule:MF_00195}. FT NP_BIND 123 126 GTP 1. {ECO:0000255|HAMAP-Rule:MF_00195}. FT NP_BIND 203 210 GTP 2. {ECO:0000255|HAMAP-Rule:MF_00195}. FT NP_BIND 250 254 GTP 2. {ECO:0000255|HAMAP-Rule:MF_00195}. FT NP_BIND 314 317 GTP 2. {ECO:0000255|HAMAP-Rule:MF_00195}. SQ SEQUENCE 458 AA; 51206 MW; 9D3824C1B3F78B68 CRC64; MNTSHKTLKT IAILGQPNVG KSSLFNRLAR ERIAITSDFA GTTRDINKRK IALNGHEVEL LDTGGMAKDA LLSKEIKALN LKAAQMSDLI LYVVDGKSIP SDEDLKLFRE VFKINPNCFL VINKIDNDKE KERAYAFSSF GMPKSFNISV SHNRGISALI DAVLSALDLN QIIEQDLDAD ILESLETPNN ALEEEIIQVG IIGRVNVGKS SLLNALTKKE RSLVSSVAGT TIDPIDETIL IGDQKICFVD TAGIRHRGKI LGIEKYALER TQKALEKSHI ALLVLDVSAP FVELDEKISS LADKHSLGII LVLNKWDIRY APYEEIIATL KRKFRFLEYA PVITTSCLKA RHIDEIKHKI IEVYECFSKR IPTSLLNSVI NQATQKHPLP SDGGKLVKVY YATQFATKPP QISLIMNRPK ALHFSYKRYL INTLRKEFNF LGTPLILNAK DKKSAQQN // ID DHE4_HELPY Reviewed; 448 AA. AC P55990; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 92. DE RecName: Full=NADP-specific glutamate dehydrogenase; DE Short=NADP-GDH; DE EC=1.4.1.4; GN Name=gdhA; OrderedLocusNames=HP_0380; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible oxidative deamination of CC glutamate to alpha-ketoglutarate and ammonia. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: L-glutamate + H(2)O + NADP(+) = 2-oxoglutarate CC + NH(3) + NADPH. CC -!- SUBUNIT: Homohexamer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the Glu/Leu/Phe/Val dehydrogenases family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07448.1; -; Genomic_DNA. DR PIR; D64567; D64567. DR RefSeq; NP_207178.1; NC_000915.1. DR RefSeq; WP_000289187.1; NC_018939.1. DR ProteinModelPortal; P55990; -. DR SMR; P55990; 2-448. DR STRING; 85962.HP0380; -. DR PaxDb; P55990; -. DR PRIDE; P55990; -. DR EnsemblBacteria; AAD07448; AAD07448; HP_0380. DR GeneID; 898871; -. DR KEGG; heo:C694_01930; -. DR KEGG; hpy:HP0380; -. DR PATRIC; 20591997; VBIHelPyl33062_0392. DR eggNOG; ENOG4105D82; Bacteria. DR eggNOG; COG0334; LUCA. DR KO; K00262; -. DR OMA; VPWVDDA; -. DR OrthoDB; EOG65XN4D; -. DR BioCyc; HPY:HP0380-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB. DR GO; GO:0004354; F:glutamate dehydrogenase (NADP+) activity; ISS:UniProtKB. DR GO; GO:0006537; P:glutamate biosynthetic process; ISS:UniProtKB. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR006095; Glu/Leu/Phe/Val_DH. DR InterPro; IPR006096; Glu/Leu/Phe/Val_DH_C. DR InterPro; IPR006097; Glu/Leu/Phe/Val_DH_dimer_dom. DR InterPro; IPR014362; Glu_DH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00208; ELFV_dehydrog; 1. DR Pfam; PF02812; ELFV_dehydrog_N; 1. DR PIRSF; PIRSF000185; Glu_DH; 1. DR PRINTS; PR00082; GLFDHDRGNASE. DR SMART; SM00839; ELFV_dehydrog; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00074; GLFV_DEHYDROGENASE; 1. PE 3: Inferred from homology; KW Complete proteome; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 448 NADP-specific glutamate dehydrogenase. FT /FTId=PRO_0000182771. FT ACT_SITE 124 124 Proton donor. {ECO:0000255|PROSITE- FT ProRule:PRU10011}. FT BINDING 88 88 Substrate. {ECO:0000250}. FT BINDING 109 109 Substrate. {ECO:0000250}. FT BINDING 112 112 Substrate. {ECO:0000250}. FT BINDING 163 163 Substrate; via carbonyl oxygen. FT {ECO:0000250}. FT BINDING 207 207 NADP. {ECO:0000250}. FT BINDING 238 238 NADP. {ECO:0000250}. FT BINDING 381 381 Substrate. {ECO:0000250}. FT SITE 164 164 Important for catalysis. {ECO:0000250}. SQ SEQUENCE 448 AA; 49379 MW; 1044636E2F696A43 CRC64; MYVEKILQSL QKKYPYQKEF HQAVYEAITS LKPLLDSDKS YEKHAILERL IEPEREIFFR VCWLDDNNQI QVNRGCRVEF NSAIGPYKGG LRFHPSVNES VIKFLGFEQV LKNSLTTLAM GGAKGGSDFD PKGKSEHEIM RFCQAFMNEL YRHIGATTDV PAGDIGVGER EIGYLFGQYK KLVNRFEGVL TGKGLTYGGS LCRKEATGYG CVYFAEEMLQ ERNSSLEGKV CSVSGSGNVA IYTIEKLLQI GAKPVTASDS NGMIYDKDGI DLELLKEIKE VRRGRIKEYA LEKKSAEYTP TENYPKGGNA VWHVPCFAAF PSATENELSV LDAKTLLSNG CKCVAEGANM PSSNEAIGLF LQAKISYGIG KAANAGGVSV SGLEMAQNAS MHPWSFEVVD AKLHHIMKEI YKNVSQTAKE FKDPTNFVLG ANIAGFRKVA SAMIAQGV // ID DHOM_HELPY Reviewed; 421 AA. AC P56429; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 09-DEC-2015, entry version 104. DE RecName: Full=Homoserine dehydrogenase; DE Short=HDH; DE EC=1.1.1.3; GN Name=hom; OrderedLocusNames=HP_0822; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: L-homoserine + NAD(P)(+) = L-aspartate 4- CC semialdehyde + NAD(P)H. CC -!- PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via de CC novo pathway; L-homoserine from L-aspartate: step 3/3. CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 3/5. CC -!- SIMILARITY: Belongs to the homoserine dehydrogenase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 ACT domain. {ECO:0000255|PROSITE- CC ProRule:PRU01007}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07869.1; -; Genomic_DNA. DR PIR; F64622; F64622. DR RefSeq; NP_207615.1; NC_000915.1. DR RefSeq; WP_000746824.1; NC_018939.1. DR ProteinModelPortal; P56429; -. DR DIP; DIP-3530N; -. DR IntAct; P56429; 3. DR MINT; MINT-160517; -. DR STRING; 85962.HP0822; -. DR PaxDb; P56429; -. DR PRIDE; P56429; -. DR EnsemblBacteria; AAD07869; AAD07869; HP_0822. DR GeneID; 898826; -. DR KEGG; heo:C694_04210; -. DR KEGG; hpy:HP0822; -. DR PATRIC; 20592933; VBIHelPyl33062_0855. DR eggNOG; ENOG4105D6E; Bacteria. DR eggNOG; COG0460; LUCA. DR KO; K00003; -. DR OMA; EWIAGII; -. DR OrthoDB; EOG6XM7CQ; -. DR BioCyc; HPY:HP0822-MONOMER; -. DR UniPathway; UPA00050; UER00063. DR UniPathway; UPA00051; UER00465. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004412; F:homoserine dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR005106; Asp/hSer_DH_NAD-bd. DR InterPro; IPR016204; HDH. DR InterPro; IPR001342; HDH_cat. DR InterPro; IPR019811; HDH_CS. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01842; ACT; 1. DR Pfam; PF00742; Homoserine_dh; 1. DR Pfam; PF03447; NAD_binding_3; 1. DR PIRSF; PIRSF000098; Homoser_dehydrog; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS01042; HOMOSER_DHGENASE; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Branched-chain amino acid biosynthesis; KW Complete proteome; Isoleucine biosynthesis; Methionine biosynthesis; KW NADP; Oxidoreductase; Reference proteome; Threonine biosynthesis. FT CHAIN 1 421 Homoserine dehydrogenase. FT /FTId=PRO_0000066694. FT DOMAIN 343 418 ACT. {ECO:0000255|PROSITE- FT ProRule:PRU01007}. FT NP_BIND 10 17 NADP. {ECO:0000250}. FT ACT_SITE 201 201 Proton donor. {ECO:0000255}. FT BINDING 103 103 NADP. {ECO:0000250}. FT BINDING 186 186 Substrate. {ECO:0000250}. SQ SEQUENCE 421 AA; 46168 MW; 1C10A8C37D2C975B CRC64; MKKRLNIGLV GLGCVGSAVA KILQENQEII KDRAGVGIGI KKAVVRDVKK HKGYPFEISN DLESLIEDEE IDIVVELMGG VEAPYLLAKK TLAKQKAFVT ANKAMLAYHR YELEQTAKNT PIGFEASVCG GIPIIKALKD GLSANHILSF KGILNGTSNY ILSQMFKNQA SFKDALKDAQ HLGYAELNPE FDIKGIDAAH KLLILASLAY GIDAKLEEIL IEGIEKIEPD DMEFAKEFGY SIKLLGIAKK HPDCIELRVH PSMIKNECML SKVDGVMNAI SVIGDKVGET LYYGAGAGGE PTASAVISDI IEIARKKSSL MLGFETPQKL PLKPKEEIQC AYYARLLVSD EKGVFSQISA ILAQNDISLN NVLQKEILHS NKAKILFSTH TTNEKSMLNA LKELENLQSV LDTPKMIRLE N // ID DNAJ_HELPY Reviewed; 369 AA. AC O25890; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 113. DE RecName: Full=Chaperone protein DnaJ {ECO:0000255|HAMAP-Rule:MF_01152}; GN Name=dnaJ {ECO:0000255|HAMAP-Rule:MF_01152}; GN OrderedLocusNames=HP_1332; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates actively in the response to hyperosmotic CC and heat shock by preventing the aggregation of stress-denatured CC proteins and by disaggregating proteins, also in an autonomous, CC DnaK-independent fashion. Unfolded proteins bind initially to CC DnaJ; upon interaction with the DnaJ-bound protein, DnaK CC hydrolyzes its bound ATP, resulting in the formation of a stable CC complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers CC the release of the substrate protein, thus completing the reaction CC cycle. Several rounds of ATP-dependent interactions between DnaJ, CC DnaK and GrpE are required for fully efficient folding. Also CC involved, together with DnaK and GrpE, in the DNA replication of CC plasmids through activation of initiation proteins. CC {ECO:0000255|HAMAP-Rule:MF_01152}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01152}; CC Note=Binds 2 Zn(2+) ions per monomer. {ECO:0000255|HAMAP- CC Rule:MF_01152}; CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01152}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01152}. CC -!- DOMAIN: The J domain is necessary and sufficient to stimulate DnaK CC ATPase activity. Zinc center 1 plays an important role in the CC autonomous, DnaK-independent chaperone activity of DnaJ. Zinc CC center 2 is essential for interaction with DnaK and for DnaJ CC activity. {ECO:0000255|HAMAP-Rule:MF_01152}. CC -!- SIMILARITY: Belongs to the DnaJ family. {ECO:0000255|HAMAP- CC Rule:MF_01152}. CC -!- SIMILARITY: Contains 1 CR-type zinc finger. {ECO:0000255|HAMAP- CC Rule:MF_01152}. CC -!- SIMILARITY: Contains 1 J domain. {ECO:0000255|HAMAP- CC Rule:MF_01152}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08373.1; -; Genomic_DNA. DR PIR; D64686; D64686. DR RefSeq; NP_208124.1; NC_000915.1. DR RefSeq; WP_000423848.1; NC_018939.1. DR ProteinModelPortal; O25890; -. DR SMR; O25890; 5-77. DR DIP; DIP-3240N; -. DR IntAct; O25890; 7. DR MINT; MINT-170055; -. DR STRING; 85962.HP1332; -. DR PaxDb; O25890; -. DR PRIDE; O25890; -. DR EnsemblBacteria; AAD08373; AAD08373; HP_1332. DR GeneID; 898772; -. DR KEGG; heo:C694_06875; -. DR KEGG; hpy:HP1332; -. DR PATRIC; 20594045; VBIHelPyl33062_1393. DR eggNOG; ENOG4105BZ5; Bacteria. DR eggNOG; COG0484; LUCA. DR KO; K03686; -. DR OMA; EVEKHSN; -. DR OrthoDB; EOG6BPDKP; -. DR BioCyc; HPY:HP1332-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0009408; P:response to heat; IEA:InterPro. DR Gene3D; 1.10.287.110; -; 1. DR Gene3D; 2.10.230.10; -; 1. DR HAMAP; MF_01152; DnaJ; 1. DR InterPro; IPR012724; DnaJ. DR InterPro; IPR002939; DnaJ_C. DR InterPro; IPR001623; DnaJ_domain. DR InterPro; IPR008971; HSP40/DnaJ_pept-bd. DR InterPro; IPR001305; HSP_DnaJ_Cys-rich_dom. DR Pfam; PF00226; DnaJ; 1. DR Pfam; PF01556; DnaJ_C; 1. DR Pfam; PF00684; DnaJ_CXXCXGXG; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR SUPFAM; SSF49493; SSF49493; 3. DR SUPFAM; SSF57938; SSF57938; 1. DR TIGRFAMs; TIGR02349; DnaJ_bact; 1. DR PROSITE; PS50076; DNAJ_2; 1. DR PROSITE; PS51188; ZF_CR; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Cytoplasm; DNA replication; KW Metal-binding; Reference proteome; Repeat; Stress response; Zinc; KW Zinc-finger. FT CHAIN 1 369 Chaperone protein DnaJ. FT /FTId=PRO_0000070796. FT DOMAIN 4 69 J. {ECO:0000255|HAMAP-Rule:MF_01152}. FT REPEAT 143 150 CXXCXGXG motif. FT REPEAT 159 166 CXXCXGXG motif. FT REPEAT 181 188 CXXCXGXG motif. FT REPEAT 195 202 CXXCXGXG motif. FT ZN_FING 130 207 CR-type. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT COMPBIAS 76 113 Gly-rich. FT METAL 143 143 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 146 146 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 159 159 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 162 162 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 181 181 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 184 184 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 195 195 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01152}. FT METAL 198 198 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_01152}. SQ SEQUENCE 369 AA; 41851 MW; FDFC3C38AAE299E5 CRC64; MELSYYEILE VEKHSNQETI KKSYRKLALK YHPDRNAGDK EAEEKFKLIN EAYGVLSDEK KRALYDRYGK KGLNQAGASQ GDFSDFFEDL GSFFEDAFGF GARGSKRQKS SIAPDYLQTL ELSFKEAVFG CKKTIKVQYQ SVCESCDGTG AKDKALETCK QCNGQGQVFM RQGFMSFAQT CGACQGKGKI VKTPCQACKG KTYILKDEEI DAIIPEGIDD QNRMVLKNKG NEYEKGKRGD LYLEAQVKED EHFKREGCDL FIKAPVFFTT IALGHTIKVP SLKGDELELK IPRNARDKQT FAFRNEGVKH PESSYRGSLI VELQVIYPKS LNKEQQELLE KLHASFGYEG EPHKSVLETC ISKIKDWFK // ID DNAB_HELPY Reviewed; 488 AA. AC O25916; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 97. DE RecName: Full=Replicative DNA helicase; DE EC=3.6.4.12; GN Name=dnaB; OrderedLocusNames=HP_1362; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates in initiation and elongation during CC chromosome replication; it exhibits DNA-dependent ATPase activity CC and contains distinct active sites for ATP binding, DNA binding, CC and interaction with DnaC protein, primase, and other prepriming CC proteins. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC -!- INTERACTION: CC Self; NbExp=2; IntAct=EBI-7529552, EBI-7529552; CC -!- SIMILARITY: Belongs to the helicase family. DnaB subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 SF4 helicase domain. {ECO:0000255|PROSITE- CC ProRule:PRU00596}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08402.1; -; Genomic_DNA. DR PIR; B64690; B64690. DR RefSeq; NP_208154.1; NC_000915.1. DR RefSeq; WP_000349722.1; NC_018939.1. DR PDB; 3GXV; X-ray; 2.20 A; A/B=1-121, C=101-122, D=98-123. DR PDB; 4A1F; X-ray; 2.50 A; A/B=152-488. DR PDB; 4ZC0; X-ray; 6.70 A; A/B/C/D=1-488. DR PDBsum; 3GXV; -. DR PDBsum; 4A1F; -. DR PDBsum; 4ZC0; -. DR ProteinModelPortal; O25916; -. DR DIP; DIP-3388N; -. DR IntAct; O25916; 4. DR MINT; MINT-181617; -. DR STRING; 85962.HP1362; -. DR PaxDb; O25916; -. DR PRIDE; O25916; -. DR EnsemblBacteria; AAD08402; AAD08402; HP_1362. DR GeneID; 900325; -. DR KEGG; heo:C694_07030; -. DR KEGG; hpy:HP1362; -. DR PATRIC; 20594113; VBIHelPyl33062_1427. DR eggNOG; ENOG4105CDU; Bacteria. DR eggNOG; COG0305; LUCA. DR KO; K02314; -. DR OMA; QNMERIV; -. DR OrthoDB; EOG6T4RW5; -. DR BioCyc; HPY:HP1362-MONOMER; -. DR EvolutionaryTrace; O25916; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003678; F:DNA helicase activity; IEA:InterPro. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0006269; P:DNA replication, synthesis of RNA primer; IEA:UniProtKB-KW. DR Gene3D; 1.10.860.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR007692; DNA_helicase_DnaB. DR InterPro; IPR007694; DNA_helicase_DnaB-like_C. DR InterPro; IPR007693; DNA_helicase_DnaB-like_N. DR InterPro; IPR016136; DNA_helicase_N/primase_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00772; DnaB; 1. DR Pfam; PF03796; DnaB_C; 1. DR SUPFAM; SSF48024; SSF48024; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR TIGRFAMs; TIGR00665; DnaB; 1. DR PROSITE; PS51199; SF4_HELICASE; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Complete proteome; DNA replication; KW DNA-binding; Helicase; Hydrolase; Nucleotide-binding; Primosome; KW Reference proteome. FT CHAIN 1 488 Replicative DNA helicase. FT /FTId=PRO_0000102023. FT DOMAIN 172 471 SF4 helicase. {ECO:0000255|PROSITE- FT ProRule:PRU00596}. FT NP_BIND 203 210 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00596}. FT HELIX 3 23 {ECO:0000244|PDB:3GXV}. FT HELIX 25 27 {ECO:0000244|PDB:3GXV}. FT HELIX 28 32 {ECO:0000244|PDB:3GXV}. FT HELIX 37 39 {ECO:0000244|PDB:3GXV}. FT HELIX 43 57 {ECO:0000244|PDB:3GXV}. FT HELIX 64 69 {ECO:0000244|PDB:3GXV}. FT STRAND 73 75 {ECO:0000244|PDB:3GXV}. FT HELIX 79 86 {ECO:0000244|PDB:3GXV}. FT HELIX 95 120 {ECO:0000244|PDB:3GXV}. FT HELIX 154 171 {ECO:0000244|PDB:4A1F}. FT TURN 172 174 {ECO:0000244|PDB:4A1F}. FT HELIX 184 190 {ECO:0000244|PDB:4A1F}. FT STRAND 198 203 {ECO:0000244|PDB:4A1F}. FT HELIX 209 222 {ECO:0000244|PDB:4A1F}. FT STRAND 226 234 {ECO:0000244|PDB:4A1F}. FT HELIX 236 248 {ECO:0000244|PDB:4A1F}. FT HELIX 252 257 {ECO:0000244|PDB:4A1F}. FT HELIX 262 277 {ECO:0000244|PDB:4A1F}. FT STRAND 280 283 {ECO:0000244|PDB:4A1F}. FT HELIX 290 303 {ECO:0000244|PDB:4A1F}. FT STRAND 307 316 {ECO:0000244|PDB:4A1F}. FT HELIX 321 326 {ECO:0000244|PDB:4A1F}. FT HELIX 331 345 {ECO:0000244|PDB:4A1F}. FT STRAND 349 354 {ECO:0000244|PDB:4A1F}. FT HELIX 357 361 {ECO:0000244|PDB:4A1F}. FT STRAND 362 364 {ECO:0000244|PDB:4A1F}. FT HELIX 369 371 {ECO:0000244|PDB:4A1F}. FT STRAND 372 374 {ECO:0000244|PDB:4A1F}. FT STRAND 383 389 {ECO:0000244|PDB:4A1F}. FT HELIX 391 407 {ECO:0000244|PDB:4A1F}. FT HELIX 408 410 {ECO:0000244|PDB:4A1F}. FT HELIX 412 431 {ECO:0000244|PDB:4A1F}. FT STRAND 434 445 {ECO:0000244|PDB:4A1F}. FT STRAND 451 458 {ECO:0000244|PDB:4A1F}. FT HELIX 459 461 {ECO:0000244|PDB:4A1F}. FT TURN 469 471 {ECO:0000244|PDB:4A1F}. SQ SEQUENCE 488 AA; 55726 MW; 6FF84C2DE4ED606F CRC64; MDHLKHLQQL QNIERIVLSG IVLANHKIEE VHSVLEPSDF YYPPNGLFFE IALKLHEEDC PIDENFIRQK MPKDKQIKEE DLVAIFAASP IDNIEAYVEE IKNASIKRKL FGLANTIREQ ALESAQKSSD ILGAVEREVY ALLNGSTIEG FRNIKEVLES AMDLITENQR KGSLEVTGIP TGFVQLDNYT SGFNKGSLVI IGARPSMGKT SLMMNMVLSA LNDDRGVAVF SLEMSAEQLA LRALSDLTSI NMHDLESGRL DDDQWENLAK CFDHLSQKKL FFYDKSYVRI EQIRLQLRKL KSQHKELGIA FIDYLQLMSG SKATKERHEQ IAEISRELKT LARELEIPII ALVQLNRSLE NRDDKRPILS DIKDSGGIEQ DADIVLFLYR GYIYQMRAED NKIDKLKKEG KIEEAQELYL KVNEERRIHK QNGSIEEAEI IVAKNRNGAT GTVYTRFNAP FTRYEDMPID SHLEEGQETK VDYDIVTT // ID DNAA_HELPY Reviewed; 457 AA. AC O26057; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Chromosomal replication initiator protein DnaA; GN Name=dnaA; OrderedLocusNames=HP_1529; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Plays an important role in the initiation and regulation CC of chromosomal replication. Binds to the origin of replication; it CC binds specifically double-stranded DNA at a 9 bp consensus (dnaA CC box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic CC phospholipids (By similarity). {ECO:0000250}. CC -!- INTERACTION: CC O25828:HP_1230; NbExp=4; IntAct=EBI-527994, EBI-527984; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the DnaA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08568.1; -; Genomic_DNA. DR PIR; A64711; A64711. DR RefSeq; NP_208319.1; NC_000915.1. DR RefSeq; WP_000380647.1; NC_018939.1. DR PDB; 2WP0; X-ray; 2.67 A; C/D=1-112. DR PDBsum; 2WP0; -. DR ProteinModelPortal; O26057; -. DR DIP; DIP-3596N; -. DR IntAct; O26057; 3. DR MINT; MINT-165841; -. DR STRING; 85962.HP1529; -. DR PaxDb; O26057; -. DR PRIDE; O26057; -. DR EnsemblBacteria; AAD08568; AAD08568; HP_1529. DR GeneID; 899761; -. DR KEGG; heo:C694_07920; -. DR KEGG; hpy:HP1529; -. DR PATRIC; 20594479; VBIHelPyl33062_1607. DR eggNOG; ENOG4105CI4; Bacteria. DR eggNOG; COG0593; LUCA. DR KO; K02313; -. DR OMA; EKSPFIL; -. DR OrthoDB; EOG689HR1; -. DR BioCyc; HPY:HP1529-MONOMER; -. DR EvolutionaryTrace; O26057; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003688; F:DNA replication origin binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006270; P:DNA replication initiation; IEA:UniProtKB-HAMAP. DR GO; GO:0006275; P:regulation of DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1750.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00377; DnaA_bact; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR001957; Chromosome_initiator_DnaA. DR InterPro; IPR020591; Chromosome_initiator_DnaA-like. DR InterPro; IPR018312; Chromosome_initiator_DnaA_CS. DR InterPro; IPR013317; DnaA. DR InterPro; IPR013159; DnaA_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR010921; Trp_repressor/repl_initiator. DR Pfam; PF00308; Bac_DnaA; 1. DR Pfam; PF08299; Bac_DnaA_C; 1. DR PRINTS; PR00051; DNAA. DR SMART; SM00382; AAA; 1. DR SMART; SM00760; Bac_DnaA_C; 1. DR SUPFAM; SSF48295; SSF48295; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00362; DnaA; 1. DR PROSITE; PS01008; DNAA; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Complete proteome; Cytoplasm; KW DNA replication; DNA-binding; Nucleotide-binding; Reference proteome. FT CHAIN 1 457 Chromosomal replication initiator protein FT DnaA. FT /FTId=PRO_0000114188. FT NP_BIND 150 157 ATP. {ECO:0000255}. FT HELIX 7 10 {ECO:0000244|PDB:2WP0}. FT HELIX 11 16 {ECO:0000244|PDB:2WP0}. FT HELIX 23 28 {ECO:0000244|PDB:2WP0}. FT HELIX 30 32 {ECO:0000244|PDB:2WP0}. FT STRAND 37 39 {ECO:0000244|PDB:2WP0}. FT STRAND 42 51 {ECO:0000244|PDB:2WP0}. FT HELIX 52 71 {ECO:0000244|PDB:2WP0}. FT STRAND 84 89 {ECO:0000244|PDB:2WP0}. SQ SEQUENCE 457 AA; 51683 MW; 975B30C9AB3A3C97 CRC64; MDTNNNIEKE ILALVKQNPK VSLIEYENYF SQLKYNPNAS KSDIAFFYAP NQVLCTTITA KYGALLKEIL SQNKVGMHLA HSVDVRIEVA PKIQINAQSN INYKAIKTSV KDSYTFENFV VGSCNNTVYE IAKKVAQSDT PPYNPVLFYG GTGLGKTHIL NAIGNHALEK HKKVVLVTSE DFLTDFLKHL DNKTMDSFKA KYRHCDFFLL DDAQFLQGKP KLEEEFFHTF NELHANSKQI VLISDRSPKN IAGLEDRLKS RFEWGITAKV MPPDLETKLS IVKQKCQLNQ ITLPEEVMEY IAQHISDNIR QMEGAIIKIS VNANLMNASI DLNLAKTVLE DLQKDHAEGS SLENILLAVA QSLNLKSSEI KVSSRQKNVA LARKLVVYFA RLYTPNPTLS LAQFLDLKDH SSISKMYSGV KKMLEEEKSP FVLSLREEIK NRLNELNDKK TAFNSSE // ID DUS_HELPY Reviewed; 328 AA. AC O25427; DT 15-DEC-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Probable tRNA-dihydrouridine synthase; DE EC=1.3.1.-; GN Name=dus; OrderedLocusNames=HP_0727; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the synthesis of 5,6-dihydrouridine (D), a CC modified base found in the D-loop of most tRNAs, via the reduction CC of the C5-C6 double bond in target uridines. CC {ECO:0000250|UniProtKB:P33371}. CC -!- CATALYTIC ACTIVITY: 5,6-dihydrouracil in tRNA + NAD(P)(+) = uracil CC in tRNA + NAD(P)H. {ECO:0000250|UniProtKB:P33371}. CC -!- COFACTOR: CC Name=FMN; Xref=ChEBI:CHEBI:58210; CC Evidence={ECO:0000250|UniProtKB:P33371}; CC -!- SIMILARITY: Belongs to the Dus family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07774.1; -; Genomic_DNA. DR PIR; G64610; G64610. DR RefSeq; NP_207521.1; NC_000915.1. DR RefSeq; WP_000346174.1; NC_018939.1. DR ProteinModelPortal; O25427; -. DR DIP; DIP-3615N; -. DR IntAct; O25427; 1. DR MINT; MINT-185296; -. DR STRING; 85962.HP0727; -. DR PaxDb; O25427; -. DR PRIDE; O25427; -. DR EnsemblBacteria; AAD07774; AAD07774; HP_0727. DR GeneID; 898757; -. DR KEGG; heo:C694_03740; -. DR KEGG; hpy:HP0727; -. DR PATRIC; 20592741; VBIHelPyl33062_0759. DR eggNOG; ENOG4105CEH; Bacteria. DR eggNOG; COG0042; LUCA. DR KO; K05540; -. DR OMA; HKEDEYP; -. DR OrthoDB; EOG6VHZFQ; -. DR BioCyc; HPY:HP0727-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro. DR Gene3D; 1.10.1200.80; -; 1. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR024036; tRNA-dHydroUridine_Synthase_C. DR InterPro; IPR001269; tRNA_hU_synthase. DR InterPro; IPR018517; tRNA_hU_synthase_CS. DR PANTHER; PTHR11082; PTHR11082; 1. DR Pfam; PF01207; Dus; 1. DR PIRSF; PIRSF006621; Dus; 1. DR PROSITE; PS01136; UPF0034; 1. PE 3: Inferred from homology; KW Complete proteome; Flavoprotein; FMN; NADP; Oxidoreductase; KW Reference proteome; RNA-binding; tRNA processing; tRNA-binding. FT CHAIN 1 328 Probable tRNA-dihydrouridine synthase. FT /FTId=PRO_0000162134. FT NP_BIND 13 15 FMN. {ECO:0000250|UniProtKB:P33371}. FT NP_BIND 198 200 FMN. {ECO:0000250|UniProtKB:P33371}. FT NP_BIND 222 223 FMN. {ECO:0000250|UniProtKB:P33371}. FT ACT_SITE 98 98 Proton donor. FT {ECO:0000250|UniProtKB:Q5SMC7}. FT BINDING 67 67 FMN. {ECO:0000250|UniProtKB:P33371}. FT BINDING 138 138 FMN. {ECO:0000250|UniProtKB:P33371}. SQ SEQUENCE 328 AA; 37150 MW; D4F3494C7CF0B6B3 CRC64; MDFKNKKWLF LAPLAGYTDL PFRSVVKKFG VDVTTSEMVS SHSLVYAFDK TSKMLEKSPL EDHFMAQISG SKESVVKEAV EKINALEHVN GIDFNCGCPA PKVANHGNGS GLLKDLNHLV KLLKTIRENT SKKITSVKVR LGFEKKIPKE IAHALNDAPV DYVVVHGRTR SDKYQKDKID YESIALMKKI LKKPVIANGE IDSVKKAFEV LQITQADGLM IGRAALRAPW IFWQIRNNTT KLPAVVKKDL VLEHFDKMVE FYGDMGVIMF RKNLHAYAKG EMQASAFRNC VNTLTEIKSM RESIEEFFNQ EMLQSEVPLW VELNQKSV // ID DPO1_HELPY Reviewed; 891 AA. AC P56105; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-NOV-2015, entry version 107. DE RecName: Full=DNA polymerase I; DE Short=POL I; DE EC=2.7.7.7; GN Name=polA; OrderedLocusNames=HP_1470; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: In addition to polymerase activity, this DNA polymerase CC exhibits 3' to 5' and 5' to 3' exonuclease activity. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). CC -!- SUBUNIT: Single-chain monomer with multiple functions. CC -!- SIMILARITY: Belongs to the DNA polymerase type-A family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 3'-5' exonuclease domain. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 5'-3' exonuclease domain. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08510.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08510.1; ALT_INIT; Genomic_DNA. DR PIR; F64703; F64703. DR RefSeq; NP_208261.1; NC_000915.1. DR RefSeq; WP_000437576.1; NC_018939.1. DR RefSeq; WP_010875630.1; NC_000915.1. DR ProteinModelPortal; P56105; -. DR DIP; DIP-3098N; -. DR IntAct; P56105; 5. DR MINT; MINT-181017; -. DR STRING; 85962.HP1470; -. DR PaxDb; P56105; -. DR EnsemblBacteria; AAD08510; AAD08510; HP_1470. DR GeneID; 899822; -. DR KEGG; heo:C694_07610; -. DR KEGG; hpy:HP1470; -. DR PATRIC; 20594351; VBIHelPyl33062_1544. DR eggNOG; ENOG4105C2M; Bacteria. DR eggNOG; COG0258; LUCA. DR eggNOG; COG0749; LUCA. DR KO; K02335; -. DR OMA; CFDTETT; -. DR OrthoDB; EOG6SJJH7; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:InterPro. DR Gene3D; 3.30.420.10; -; 1. DR Gene3D; 3.40.50.1010; -; 1. DR InterPro; IPR002562; 3'-5'_exonuclease_dom. DR InterPro; IPR020046; 5-3_exonucl_a-hlix_arch_N. DR InterPro; IPR020045; 5-3_exonuclease_C. DR InterPro; IPR002421; 5-3_exonuclease_N. DR InterPro; IPR019760; DNA-dir_DNA_pol_A_CS. DR InterPro; IPR001098; DNA-dir_DNA_pol_A_palm_dom. DR InterPro; IPR018320; DNA_polymerase_1. DR InterPro; IPR002298; DNA_polymerase_A. DR InterPro; IPR008918; HhH2. DR InterPro; IPR029060; PIN_domain-like. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF01367; 5_3_exonuc; 1. DR Pfam; PF02739; 5_3_exonuc_N; 1. DR Pfam; PF00476; DNA_pol_A; 1. DR PRINTS; PR00868; DNAPOLI. DR SMART; SM00474; 35EXOc; 1. DR SMART; SM00475; 53EXOc; 1. DR SMART; SM00279; HhH2; 1. DR SMART; SM00482; POLAc; 1. DR SUPFAM; SSF47807; SSF47807; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR SUPFAM; SSF88723; SSF88723; 1. DR TIGRFAMs; TIGR00593; pola; 1. DR PROSITE; PS00447; DNA_POLYMERASE_A; 1. PE 3: Inferred from homology; KW Complete proteome; DNA damage; DNA repair; DNA replication; KW DNA-binding; DNA-directed DNA polymerase; Exonuclease; Hydrolase; KW Nuclease; Nucleotidyltransferase; Reference proteome; Transferase. FT CHAIN 1 891 DNA polymerase I. FT /FTId=PRO_0000101241. FT DOMAIN 1 313 5'-3' exonuclease. FT DOMAIN 314 488 3'-5' exonuclease. FT REGION 492 890 Polymerase. SQ SEQUENCE 891 AA; 101975 MW; 3D6E7D8FF613EB88 CRC64; MEQPVIKEGT LALIDTFAYL FRSYYMSAKN KPLTNDKGFP TGLLTGLVGM VKKFYKDRKN MPFIVFALES QTKTKRAEKL GEYKQNRKDA PKEMLLQIPI ALEWLQKMGF VCVEVNGFEA DDVIASLATL SPYKTRIYSK DKDFNQLLSD KIALFDGKTE FLAKDCVEKY GILPSQFTDY QGIVGDSSDN YKGVKGIGSK NAKELLQRLG SLEKIYENLD LAKNLLSPKM YRALIHDKAS AFLSKELATL ERGCIKEFDF LSCAFPSENP LLKIKDELKE YGFISTLRDL ENSPTPLILD NAPLLDNTPA LDNTPKKSCM IVLESAAPLS AFLEKLEKTN ARVFARLVLD KEKKVLALAF LYEDQGYFLP LEEALFSPFS LEFLQNAFFK MLQHAQIIGH DLKPLLSFLK AKYQVPLENI RIQDTQILAF LKNPEKVGFD EVLKEYLKEE LIPHEKIKDF KTKAEKLELL SVELNALKRL CEYFEKGGLE ENLLSLAREI ETPFMKVLMG MEFQGFKIDA PYFKRLEQEF KNELHVLERQ ILELIGVDFN LNSPKQLSEV LYDKLGLPKN KSHSTDEKSL LKILDKHPSI ALILEYRELN KLFNTYTTPL LRLKDKDDKI HTTFIQTGTA TGRLSSHSPN LQNIPVRSPK GLLIRKGFIA SSKEYCLLGV DYSQIELRLL AHFSQDKDLM EAFLKGRDIH LETSKALFGE YLAKEKRSIA KSINFGLVYG MGSKKLSETL NISLNEAKSY IEAYFKRFPS IKDYLNRMKE EILKTSKAFT LLGRYRVFDF TGANDYVKGN YLREGVNAIF QGSASDLLKL GMLKVSERFK NNPSVRLLLQ VHDELIFEIE EKNAPELQQE IQRILNDEVY PLRVPLETSA FIAKRWNELK G // ID DXR_HELPY Reviewed; 368 AA. AC P56139; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 99. DE RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183}; DE Short=DXP reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183}; DE EC=1.1.1.267 {ECO:0000255|HAMAP-Rule:MF_00183}; DE AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183}; DE AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00183}; GN Name=dxr {ECO:0000255|HAMAP-Rule:MF_00183}; OrderedLocusNames=HP_0216; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the NADP-dependent rearrangement and reduction CC of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol CC 4-phosphate (MEP). {ECO:0000255|HAMAP-Rule:MF_00183}. CC -!- CATALYTIC ACTIVITY: 2-C-methyl-D-erythritol 4-phosphate + NADP(+) CC = 1-deoxy-D-xylulose 5-phosphate + NADPH. {ECO:0000255|HAMAP- CC Rule:MF_00183}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00183}; CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 1/6. {ECO:0000255|HAMAP- CC Rule:MF_00183}. CC -!- SIMILARITY: Belongs to the DXR family. {ECO:0000255|HAMAP- CC Rule:MF_00183}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07284.1; -; Genomic_DNA. DR PIR; H64546; H64546. DR RefSeq; NP_207014.1; NC_000915.1. DR RefSeq; WP_000260724.1; NC_018939.1. DR ProteinModelPortal; P56139; -. DR DIP; DIP-3148N; -. DR IntAct; P56139; 1. DR MINT; MINT-4078963; -. DR STRING; 85962.HP0216; -. DR PaxDb; P56139; -. DR PRIDE; P56139; -. DR EnsemblBacteria; AAD07284; AAD07284; HP_0216. DR GeneID; 900133; -. DR KEGG; heo:C694_01090; -. DR KEGG; hpy:HP0216; -. DR PATRIC; 20591655; VBIHelPyl33062_0227. DR eggNOG; ENOG4105CEA; Bacteria. DR eggNOG; COG0743; LUCA. DR KO; K00099; -. DR OMA; GFCPLSE; -. DR OrthoDB; EOG6R2H04; -. DR BioCyc; HPY:HP0216-MONOMER; -. DR UniPathway; UPA00056; UER00092. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030604; F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0070402; F:NADPH binding; IEA:InterPro. DR GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00183; DXP_reductoisom; 1. DR InterPro; IPR003821; DXP_reductoisomerase. DR InterPro; IPR013644; DXP_reductoisomerase_C. DR InterPro; IPR013512; DXP_reductoisomerase_N. DR InterPro; IPR026877; DXPR_C. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR30525; PTHR30525; 1. DR Pfam; PF08436; DXP_redisom_C; 1. DR Pfam; PF02670; DXP_reductoisom; 1. DR Pfam; PF13288; DXPR_C; 1. DR PIRSF; PIRSF006205; Dxp_reductismrs; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF69055; SSF69055; 1. DR TIGRFAMs; TIGR00243; Dxr; 1. PE 3: Inferred from homology; KW Complete proteome; Isoprene biosynthesis; Metal-binding; NADP; KW Oxidoreductase; Reference proteome. FT CHAIN 1 368 1-deoxy-D-xylulose 5-phosphate FT reductoisomerase. FT /FTId=PRO_0000163663. FT NP_BIND 4 31 NADP. {ECO:0000255|HAMAP-Rule:MF_00183}. FT METAL 133 133 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00183}. FT METAL 135 135 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00183}. FT METAL 203 203 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00183}. FT BINDING 114 114 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00183}. FT BINDING 135 135 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00183}. FT BINDING 158 158 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00183}. FT BINDING 181 181 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00183}. FT BINDING 203 203 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00183}. SQ SEQUENCE 368 AA; 40271 MW; AD8A07584ED4D853 CRC64; MVVLGSTGSI GKNALKIAKK FGIEIEALSC GKNIALINEQ IQVFKPKKVA ILDPSDLNDL EPLGAEVFVG LEGIDAMIEE CTSNLVLNAI VGVAGLKASF KSLQRNKKLA LANKESLVSA GHLLDISQIT PIDSEHFGLW ALLQNKTLKP KSLIISASGG AFRDTPLEFI PIQNAQNALK HPNWSMGSKI TIDSASMVNK LFEILETYWL FGASLKIDAL IERSSIVHAL VEFEDNSIIA HLASADMQLP ISYAIDPKLA SLSASIKPLD LYALSAIKFE PISMERYTLW CYKDLLLENP KLGVVLNASN EVAMEKFLNK EIAFGGLIQT ISQALESYDK MPFKLSSLEE VLELDKEVRE RFKNVAGV // ID DXS_HELPY Reviewed; 618 AA. AC O25121; DT 21-FEB-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 110. DE RecName: Full=1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; DE EC=2.2.1.7 {ECO:0000255|HAMAP-Rule:MF_00315}; DE AltName: Full=1-deoxyxylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; DE Short=DXP synthase {ECO:0000255|HAMAP-Rule:MF_00315}; DE Short=DXPS {ECO:0000255|HAMAP-Rule:MF_00315}; GN Name=dxs {ECO:0000255|HAMAP-Rule:MF_00315}; OrderedLocusNames=HP_0354; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the acyloin condensation reaction between C CC atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield CC 1-deoxy-D-xylulose-5-phosphate (DXP). {ECO:0000255|HAMAP- CC Rule:MF_00315}. CC -!- CATALYTIC ACTIVITY: Pyruvate + D-glyceraldehyde 3-phosphate = 1- CC deoxy-D-xylulose 5-phosphate + CO(2). {ECO:0000255|HAMAP- CC Rule:MF_00315}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00315}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00315}; CC -!- COFACTOR: CC Name=thiamine diphosphate; Xref=ChEBI:CHEBI:58937; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00315}; CC Note=Binds 1 thiamine pyrophosphate per subunit. CC {ECO:0000255|HAMAP-Rule:MF_00315}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose CC 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D- CC glyceraldehyde 3-phosphate and pyruvate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_00315}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00315}. CC -!- SIMILARITY: Belongs to the transketolase family. DXPS subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00315}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07422.1; -; Genomic_DNA. DR PIR; B64564; B64564. DR RefSeq; NP_207152.1; NC_000915.1. DR RefSeq; WP_000602987.1; NC_000915.1. DR ProteinModelPortal; O25121; -. DR DIP; DIP-3091N; -. DR IntAct; O25121; 5. DR MINT; MINT-163092; -. DR STRING; 85962.HP0354; -. DR PaxDb; O25121; -. DR PRIDE; O25121; -. DR EnsemblBacteria; AAD07422; AAD07422; HP_0354. DR GeneID; 898853; -. DR KEGG; hpy:HP0354; -. DR PATRIC; 20591941; VBIHelPyl33062_0367. DR eggNOG; ENOG4105C2V; Bacteria. DR eggNOG; COG1154; LUCA. DR KO; K01662; -. DR OMA; YKGLCGF; -. DR OrthoDB; EOG6BKJ6P; -. DR BioCyc; HPY:HP0354-MONOMER; -. DR UniPathway; UPA00064; UER00091. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008661; F:1-deoxy-D-xylulose-5-phosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0052865; P:1-deoxy-D-xylulose 5-phosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 3. DR HAMAP; MF_00315; DXP_synth; 1. DR InterPro; IPR005477; Dxylulose-5-P_synthase. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR InterPro; IPR005475; Transketolase-like_Pyr-bd. DR InterPro; IPR020826; Transketolase_BS. DR InterPro; IPR033248; Transketolase_C. DR InterPro; IPR033247; Transketolase_fam. DR InterPro; IPR005474; Transketolase_N. DR PANTHER; PTHR11624; PTHR11624; 2. DR Pfam; PF13292; DXP_synthase_N; 1. DR Pfam; PF02779; Transket_pyr; 1. DR Pfam; PF02780; Transketolase_C; 1. DR SMART; SM00861; Transket_pyr; 1. DR SUPFAM; SSF52518; SSF52518; 3. DR SUPFAM; SSF52922; SSF52922; 1. DR TIGRFAMs; TIGR00204; dxs; 1. DR PROSITE; PS00801; TRANSKETOLASE_1; 1. DR PROSITE; PS00802; TRANSKETOLASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Isoprene biosynthesis; Magnesium; Metal-binding; KW Reference proteome; Thiamine biosynthesis; Thiamine pyrophosphate; KW Transferase. FT CHAIN 1 618 1-deoxy-D-xylulose-5-phosphate synthase. FT /FTId=PRO_0000189119. FT REGION 111 113 Thiamine pyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00315}. FT REGION 143 144 Thiamine pyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00315}. FT METAL 142 142 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00315}. FT METAL 171 171 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00315}. FT BINDING 70 70 Thiamine pyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00315}. FT BINDING 171 171 Thiamine pyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00315}. FT BINDING 278 278 Thiamine pyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00315}. FT BINDING 360 360 Thiamine pyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00315}. SQ SEQUENCE 618 AA; 67634 MW; 87334832DAFE3383 CRC64; MILQNKTFDL NPNDIAGLEL VCQTLRNRIL EVVSANGGHL SSSLGAVELI VGMHALFDCQ KNPFIFDTSH QAYAHKLLTG RFESFSTLRQ FKGLSGFTKP SESAYDYFIA GHSSTSVSIG VGVAKAFCLK QALGMPIALL GDGSISAGIF YEALNELGDR KYPMIMILND NEMSISTPIG ALSKALSQLM KGPFYQSFRS KVKKILSTLP ESVNYLASRF EESFKLITPG VFFEELGINY IGPINGHDLS AIIETLKLAK ELKEPVLIHA QTLKGKGYKI AEGRYEKWHG VGPFDLDTGL SKKSKSAILS PTEAYSNTLL ELAKKDEKIV GVTAAMPSGT GLDKLIDAYP LRFFDVAIAE QHALTSSSAM AKEGFKPFVS IYSTFLQRAY DSIVHDACIS SLPIKLAIDR AGIVGEDGET HQGLLDVSYL RSIPNMVIFA PRDNETLKNA VRFANEHDSS PCAFRYPRGS FALKEGVFEP SGFVLGQSEL LKKEGEILLI GYGNGVGRAH LVQLALKEKN IECALLDLRF LKPLDPNLSA IVAPYQKLYV FSDNYKLGGV ASAILEFLSE QNILKPVKSF EIIDEFIMHG NTALVEKSLG LDTESLTDAI LKDLGQER // ID DPO3B_HELPY Reviewed; 374 AA. AC O25242; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE RecName: Full=DNA polymerase III subunit beta; DE EC=2.7.7.7; GN Name=dnaN; OrderedLocusNames=HP_0500; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA polymerase III is a complex, multichain enzyme CC responsible for most of the replicative synthesis in bacteria. CC This DNA polymerase also exhibits 3' to 5' exonuclease activity. CC The beta chain is required for initiation of replication once it CC is clamped onto DNA, it slides freely (bidirectional and ATP- CC independent) along duplex DNA (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). CC -!- SUBUNIT: DNA polymerase III contains a core (composed of alpha, CC epsilon and theta chains) that associates with a tau subunit. This CC core dimerizes to form the POLIII' complex. PolIII' associates CC with the gamma complex (composed of gamma, delta, delta', psi and CC chi chains) and with the beta chain to form the complete DNA CC polymerase III complex (By similarity). {ECO:0000250}. CC -!- INTERACTION: CC O25172:HP_0418; NbExp=3; IntAct=EBI-7532786, EBI-9262675; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07565.1; -; Genomic_DNA. DR PIR; D64582; D64582. DR RefSeq; NP_207297.1; NC_000915.1. DR RefSeq; WP_000704186.1; NC_018939.1. DR PDB; 4RKI; X-ray; 2.05 A; A=1-374. DR PDB; 4S3I; X-ray; 1.95 A; A/B=1-374. DR PDBsum; 4RKI; -. DR PDBsum; 4S3I; -. DR ProteinModelPortal; O25242; -. DR DIP; DIP-3288N; -. DR IntAct; O25242; 2. DR MINT; MINT-176339; -. DR STRING; 85962.HP0500; -. DR PaxDb; O25242; -. DR PRIDE; O25242; -. DR DNASU; 899259; -. DR EnsemblBacteria; AAD07565; AAD07565; HP_0500. DR GeneID; 899259; -. DR KEGG; heo:C694_02570; -. DR KEGG; hpy:HP0500; -. DR PATRIC; 20592275; VBIHelPyl33062_0526. DR eggNOG; ENOG4105CZ8; Bacteria. DR eggNOG; COG0592; LUCA. DR KO; K02338; -. DR OMA; THQIRLK; -. DR OrthoDB; EOG65J53F; -. DR BioCyc; HPY:HP0500-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009360; C:DNA polymerase III complex; IEA:InterPro. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR InterPro; IPR001001; DNA_polIII_beta. DR InterPro; IPR022635; DNA_polIII_beta_C. DR InterPro; IPR022637; DNA_polIII_beta_cen. DR InterPro; IPR022634; DNA_polIII_beta_N. DR Pfam; PF00712; DNA_pol3_beta; 1. DR Pfam; PF02767; DNA_pol3_beta_2; 1. DR Pfam; PF02768; DNA_pol3_beta_3; 1. DR SMART; SM00480; POL3Bc; 1. DR TIGRFAMs; TIGR00663; dnan; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; DNA replication; KW DNA-directed DNA polymerase; Nucleotidyltransferase; KW Reference proteome; Transferase. FT CHAIN 1 374 DNA polymerase III subunit beta. FT /FTId=PRO_0000105438. FT STRAND 2 5 {ECO:0000244|PDB:4RKI}. FT HELIX 7 18 {ECO:0000244|PDB:4RKI}. FT HELIX 29 31 {ECO:0000244|PDB:4RKI}. FT STRAND 32 38 {ECO:0000244|PDB:4RKI}. FT STRAND 41 47 {ECO:0000244|PDB:4RKI}. FT STRAND 49 58 {ECO:0000244|PDB:4RKI}. FT STRAND 60 64 {ECO:0000244|PDB:4RKI}. FT STRAND 66 71 {ECO:0000244|PDB:4RKI}. FT HELIX 72 80 {ECO:0000244|PDB:4RKI}. FT STRAND 87 91 {ECO:0000244|PDB:4RKI}. FT STRAND 93 100 {ECO:0000244|PDB:4RKI}. FT STRAND 103 108 {ECO:0000244|PDB:4RKI}. FT HELIX 112 114 {ECO:0000244|PDB:4RKI}. FT STRAND 124 129 {ECO:0000244|PDB:4RKI}. FT HELIX 133 141 {ECO:0000244|PDB:4RKI}. FT HELIX 142 144 {ECO:0000244|PDB:4RKI}. FT HELIX 153 155 {ECO:0000244|PDB:4RKI}. FT STRAND 156 162 {ECO:0000244|PDB:4RKI}. FT TURN 163 166 {ECO:0000244|PDB:4RKI}. FT STRAND 167 173 {ECO:0000244|PDB:4RKI}. FT STRAND 175 183 {ECO:0000244|PDB:4RKI}. FT STRAND 189 200 {ECO:0000244|PDB:4RKI}. FT HELIX 201 210 {ECO:0000244|PDB:4RKI}. FT STRAND 212 219 {ECO:0000244|PDB:4RKI}. FT STRAND 221 227 {ECO:0000244|PDB:4RKI}. FT STRAND 229 236 {ECO:0000244|PDB:4RKI}. FT HELIX 245 248 {ECO:0000244|PDB:4RKI}. FT STRAND 256 260 {ECO:0000244|PDB:4RKI}. FT HELIX 261 271 {ECO:0000244|PDB:4RKI}. FT STRAND 276 283 {ECO:0000244|PDB:4RKI}. FT STRAND 286 293 {ECO:0000244|PDB:4RKI}. FT STRAND 301 305 {ECO:0000244|PDB:4RKI}. FT STRAND 316 321 {ECO:0000244|PDB:4RKI}. FT HELIX 322 330 {ECO:0000244|PDB:4RKI}. FT STRAND 334 340 {ECO:0000244|PDB:4RKI}. FT STRAND 348 352 {ECO:0000244|PDB:4RKI}. FT TURN 353 356 {ECO:0000244|PDB:4RKI}. FT STRAND 360 362 {ECO:0000244|PDB:4RKI}. FT STRAND 366 369 {ECO:0000244|PDB:4RKI}. SQ SEQUENCE 374 AA; 42185 MW; 5C1FE1C6290FDE6C CRC64; MKISVSKNDL ENALRYLQAF LDKKDASSIA SHIHLEVIKE KLFLKASDSD IGLKSYIFTQ SSDKEGVGTI NGKKFLDIIS CLKDSNIILE TKDDSLAIKQ NKSSFKLPMF DADEFPEFPV IDPKVSIEVN APFLVDAFKK IAPVIEQTSH KRELAGILMQ FDQKHQTLSV VGTDTKRLSY TQLEKISIHS TEEDISCILP KRALLEILKL FYENFSFKSD GMLAVIENEM HTFFTKLIDG NYPDYQKILP KEYISSFTLG KEEFKESIKL CSSLSSTIKL TLEKNNALFE SLDSEHSETA KTSVEIEKGL DIEKAFHLGV NAKFFLEALN ALGTTQFVLR CNEPSSPFLI QESLDEKQSH LNAKISTLMM PITL // ID EDD_HELPY Reviewed; 608 AA. AC P56111; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Phosphogluconate dehydratase; DE EC=4.2.1.12; DE AltName: Full=6-phosphogluconate dehydratase; GN Name=edd; OrderedLocusNames=HP_1100; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 6-phospho-D-gluconate = 2-dehydro-3-deoxy-6- CC phospho-D-gluconate + H(2)O. CC -!- PATHWAY: Carbohydrate metabolism; Entner-Doudoroff pathway. CC -!- SIMILARITY: Belongs to the IlvD/Edd family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08143.1; -; Genomic_DNA. DR PIR; D64657; D64657. DR RefSeq; NP_207891.1; NC_000915.1. DR RefSeq; WP_001124018.1; NC_018939.1. DR ProteinModelPortal; P56111; -. DR STRING; 85962.HP1100; -. DR PaxDb; P56111; -. DR PRIDE; P56111; -. DR EnsemblBacteria; AAD08143; AAD08143; HP_1100. DR GeneID; 899636; -. DR KEGG; heo:C694_05675; -. DR KEGG; hpy:HP1100; -. DR PATRIC; 20593539; VBIHelPyl33062_1149. DR eggNOG; ENOG4105C01; Bacteria. DR eggNOG; COG0129; LUCA. DR KO; K01690; -. DR OMA; CVVRWQG; -. DR OrthoDB; EOG61ZTBF; -. DR BioCyc; HPY:HP1100-MONOMER; -. DR UniPathway; UPA00226; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004456; F:phosphogluconate dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0009255; P:Entner-Doudoroff pathway through 6-phosphogluconate; IEA:UniProtKB-UniPathway. DR InterPro; IPR004786; 6-phosphgluc_deHydtase. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR000581; DiOHA_6PGluconate_deHydtase. DR InterPro; IPR020558; DiOHA_6PGluconate_deHydtase_CS. DR PANTHER; PTHR21000; PTHR21000; 1. DR Pfam; PF00920; ILVD_EDD; 1. DR SUPFAM; SSF52016; SSF52016; 1. DR TIGRFAMs; TIGR01196; edd; 1. DR PROSITE; PS00886; ILVD_EDD_1; 1. DR PROSITE; PS00887; ILVD_EDD_2; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Reference proteome. FT CHAIN 1 608 Phosphogluconate dehydratase. FT /FTId=PRO_0000103555. SQ SEQUENCE 608 AA; 66655 MW; 47EF7E62E3371F59 CRC64; MPKHSLEQIK EKITERSKKT RELYLENIFN PKNQPKIESL GCANIAHVTA SMPEHLKMPL GSHKRKHFAI ITAYNDMLSA HQPFKNYPDL IKKELQEHNA YASVASGVPA MCDGITQGYD GMELSLFSRD VIALSTAVGL SHNVFDGAFF LGVCDKIVPG LLIGALSFGN LASVFVPSGP MVSGIENYKK AKARQDFAMG KINREELLKV EMQSYHDVGT CTFYGTANSN QMMMEFMGLH VANSSFINPN NPLRKVLVEE SAKRLASGKV LPLAKLIDEK SILNALIGLM ATGGSTNHTL HLIAIARSCG VILNWDDFDA VSNLIPLLAK VYPNGSADVN AFEACGGLVF VIKELLKEGL LFEDTHTIMD TETQKGMQNY TKTPFLENNQ LVYKDAINHS LNTDILRPVS DPFAANGGLK ILKGNLGRAV IKISAIKDEH RKVKARAIVF KTQSEFLERF KNKELERDFV AVLPFQGPKS NGMPELHKLT TNLGALQDMG YKVALVTDGR MSGASGKVPS AIHLSPEGAL NGAIIKIKDG DLIELDAPNN ALNVLEKDFE KRGINPLFLE TLENLEKPSF GLGRELFTSL RLNVNTAEEG GMSFGIKV // ID EFP_HELPY Reviewed; 187 AA. AC P56004; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 101. DE RecName: Full=Elongation factor P; DE Short=EF-P; GN Name=efp; OrderedLocusNames=HP_0177; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in peptide bond synthesis. Stimulates efficient CC translation and peptide-bond synthesis on native or reconstituted CC 70S ribosomes in vitro. Probably functions indirectly by altering CC the affinity of the ribosome for aminoacyl-tRNA, thus increasing CC their reactivity as acceptors for peptidyl transferase (By CC similarity). {ECO:0000250}. CC -!- PATHWAY: Protein biosynthesis; polypeptide chain elongation. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the elongation factor P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07247.1; -; Genomic_DNA. DR PIR; A64542; A64542. DR RefSeq; NP_206976.1; NC_000915.1. DR RefSeq; WP_000974265.1; NC_018939.1. DR ProteinModelPortal; P56004; -. DR DIP; DIP-3260N; -. DR IntAct; P56004; 3. DR MINT; MINT-166222; -. DR STRING; 85962.HP0177; -. DR PaxDb; P56004; -. DR PRIDE; P56004; -. DR EnsemblBacteria; AAD07247; AAD07247; HP_0177. DR GeneID; 898954; -. DR KEGG; heo:C694_00880; -. DR KEGG; hpy:HP0177; -. DR PATRIC; 20591575; VBIHelPyl33062_0187. DR eggNOG; ENOG4105DRH; Bacteria. DR eggNOG; COG0231; LUCA. DR KO; K02356; -. DR OMA; DYVFMDM; -. DR OrthoDB; EOG6JQH6Q; -. DR BioCyc; HPY:HP0177-MONOMER; -. DR UniPathway; UPA00345; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW. DR Gene3D; 2.30.30.30; -; 1. DR Gene3D; 2.40.50.140; -; 2. DR HAMAP; MF_00141; EF_P; 1. DR InterPro; IPR015365; Elong-fact-P_C. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR020599; Transl_elong_fac_P/YeiP. DR InterPro; IPR013185; Transl_elong_KOW-like. DR InterPro; IPR001059; Transl_elong_P/YeiP_cen. DR InterPro; IPR013852; Transl_elong_P/YeiP_CS. DR InterPro; IPR011768; Transl_elongation_fac_P. DR InterPro; IPR008991; Translation_prot_SH3-like. DR Pfam; PF01132; EFP; 1. DR Pfam; PF08207; EFP_N; 1. DR Pfam; PF09285; Elong-fact-P_C; 1. DR PIRSF; PIRSF005901; EF-P; 1. DR SMART; SM01185; EFP; 1. DR SMART; SM00841; Elong-fact-P_C; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR SUPFAM; SSF50249; SSF50249; 2. DR TIGRFAMs; TIGR00038; efp; 1. DR PROSITE; PS01275; EFP; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Elongation factor; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 187 Elongation factor P. FT /FTId=PRO_0000094260. SQ SEQUENCE 187 AA; 20788 MW; 1B433EDFB0FAB32B CRC64; MAIGMSELKK GLKIELGGVP YRIVEYQHVK PGKGAAFVRA KIKSFLDGKV IEKTFHAGDK CEEPNLVEKT MQYLYHDGDT YQFMDIESYE QIALNDSQVG EASKWMLDGM QVQVLLHNDK AISVDVPQVV ALKIVETAPN FKGDTSSASK KPATLETGAV VQVPFHVLEG EIIKVNTETE EYLEKVK // ID DPS_HELPY Reviewed; 144 AA. AC P43313; Q64EY0; Q932V4; Q9F7B4; Q9F7B5; Q9F7B6; Q9F7B7; Q9F7B8; AC Q9F7B9; Q9K2M7; Q9K2U7; Q9KW50; Q9L762; Q9L763; Q9L764; Q9L765; AC Q9L766; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 114. DE RecName: Full=DNA protection during starvation protein; DE EC=1.16.-.-; DE AltName: Full=Bacterioferritin; DE AltName: Full=HP-NAP; DE AltName: Full=Neutrophil-activating protein A; DE Short=NAP A; GN Name=dps; Synonyms=napA; OrderedLocusNames=HP_0243; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 1-66. RC STRAIN=8826; RX PubMed=7883175; DOI=10.1016/0378-1119(94)00774-M; RA Evans D.J. Jr., Evans D.G., Lampert H.C., Nakano H.; RT "Identification of four new prokaryotic bacterioferritins, from RT Helicobacter pylori, Anabaena variabilis, Bacillus subtilis and RT Treponema pallidum, by analysis of gene sequences."; RL Gene 153:123-127(1995). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION IN NEUTROPHIL RP ACTIVATION. RC STRAIN=Isolate 96T/FRE, Isolate 96T/HAR, Isolate 96T/KAD, RC Isolate 96T/NEW, Isolate 96T/ROS, and Isolate 96T/THO; RX PubMed=11069248; DOI=10.1086/317611; RA Leakey A., La Brooy J., Hirst R.; RT "The ability of Helicobacter pylori to activate neutrophils is RT determined by factors other than H. pylori neutrophil-activating RT protein."; RL J. Infect. Dis. 182:1749-1755(2000). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=1811a, 2A, 2B, 5060d, 5A, 5D, DB2, G21, RHP901a, and SS1; RA Dundon W.G., Guidotti S., Covacci A., Rappuoli R., Montecucco C.; RL Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=YS2, and YS8; RA Nozawa R.; RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=MI 355, and MI 356; RA Dundon W.G., Carroll I., Marshall D.G., O'Morain C.A., Smyth C.J.; RL Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=MEL-HP27; RA Duan G., Kang Q.; RT "The napA gene sequence of Helicobacter pylori MEL-HP27 strain RT isolated from central China."; RL Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=Y06; RA Yuan W., Yan J., Mao Y.F.; RT "Construction of prokaryotic expression system of Helicobacter pylori RT napA gene and immunity and inflammation-induced effect of the RT expressed product."; RL Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases. RN [8] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RA Jun L., Min L., Guo L.-B., Yan L.; RT "Construction of prokaryotic expression system of Helicobacter pylori RT napA gene and immunity- and inflammation-induced effect of the RT expressed product."; RL Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases. RN [9] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [10] RP PROTEIN SEQUENCE OF 1-17, AND BINDING TO SULFATED CARBOHYDRATES IN RP MUCIN. RC STRAIN=3B3, and ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=9453593; RA Namavar F., Sparrius M., Veerman E.C., Appelmelk B.J., RA Vandenbroucke-Grauls C.M.; RT "Neutrophil-activating protein mediates adhesion of Helicobacter RT pylori to sulfated carbohydrates on high-molecular-weight salivary RT mucin."; RL Infect. Immun. 66:444-447(1998). RN [11] RP FUNCTION IN NEUTROPHIL ACTIVATION. RX PubMed=7768601; RA Evans D.J. Jr., Evans D.G., Takemura T., Nakano H., Lampert H.C., RA Graham D.Y., Granger D.N., Kvietys P.R.; RT "Characterization of a Helicobacter pylori neutrophil-activating RT protein."; RL Infect. Immun. 63:2213-2220(1995). RN [12] RP BINDING TO NEUTROPHIL GLYCOSPHINGOLIPIDS. RX PubMed=9228091; DOI=10.1074/jbc.272.30.19067; RA Teneberg S., Miller-Podraza H., Lampert H.C., Evans D.J. Jr., RA Evans D.G., Danielsson D., Karlsson K.A.; RT "Carbohydrate binding specificity of the neutrophil-activating protein RT of Helicobacter pylori."; RL J. Biol. Chem. 272:19067-19071(1997). RN [13] RP BINDING TO IRON, AND SUBUNIT. RX PubMed=10564468; DOI=10.1046/j.1365-2958.1999.01584.x; RA Tonello F., Dundon W.G., Satin B., Molinari M., Tognon G., Grandi G., RA Del Giudice G., Rappuoli R., Montecucco C.; RT "The Helicobacter pylori neutrophil-activating protein is an iron- RT binding protein with dodecameric structure."; RL Mol. Microbiol. 34:238-246(1999). RN [14] RP FUNCTION IN ACTIVATION OF NEUTROPHILS AND MONOCYTES. RX PubMed=10790422; DOI=10.1084/jem.191.9.1467; RA Satin B., Del Giudice G., Della Bianca V., Dusi S., Laudanna C., RA Tonello F., Kelleher D., Rappuoli R., Montecucco C., Rossi F.; RT "The neutrophil-activating protein (HP-NAP) of Helicobacter pylori is RT a protective antigen and a major virulence factor."; RL J. Exp. Med. 191:1467-1476(2000). RN [15] RP FUNCTION IN ACTIVATION OF MAST CELLS. RX PubMed=11857341; RX DOI=10.1002/1521-4141(200203)32:3<671::AID-IMMU671>3.3.CO;2-X; RA Montemurro P., Nishioka H., Dundon W.G., de Bernard M., RA Del Giudice G., Rappuoli R., Montecucco C.; RT "The neutrophil-activating protein (HP-NAP) of Helicobacter pylori is RT a potent stimulant of mast cells."; RL Eur. J. Immunol. 32:671-676(2002). RN [16] RP FUNCTION IN ACTIVATION OF THE MAPK PATHWAY IN HUMAN NEUTROPHILS. RX PubMed=12672049; DOI=10.1002/eji.200323726; RA Nishioka H., Baesso I., Semenzato G., Trentin L., Rappuoli R., RA Del Giudice G., Montecucco C.; RT "The neutrophil-activating protein of Helicobacter pylori (HP-NAP) RT activates the MAPK pathway in human neutrophils."; RL Eur. J. Immunol. 33:840-849(2003). RN [17] RP INTERACTION WITH DNA, FUNCTION IN PROTECTION FROM OXIDATIVE STRESS, RP AND REGULATION. RX PubMed=12748264; DOI=10.1099/jmm.0.05070-0; RA Cooksley C., Jenks P.J., Green A., Cockayne A., Logan R.P.H., RA Hardie K.R.; RT "NapA protects Helicobacter pylori from oxidative stress damage, and RT its production is influenced by the ferric uptake regulator."; RL J. Med. Microbiol. 52:461-469(2003). RN [18] RP X-RAY CRYSTALLOGRAPHY (2.52 ANGSTROMS) IN COMPLEX WITH IRON, AND RP SUBUNIT. RX PubMed=12368104; DOI=10.1016/S0022-2836(02)00879-3; RA Zanotti G., Papinutto E., Dundon W., Battistutta R., Seveso M., RA Del Giudice G., Rappuoli R., Montecucco C.; RT "Structure of the neutrophil-activating protein from Helicobacter RT pylori."; RL J. Mol. Biol. 323:125-130(2002). CC -!- FUNCTION: Protects DNA from oxidative damage by sequestering CC intracellular Fe(2+) ion and storing it in the form of Fe(3+) CC oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) CC ions, which prevents hydroxyl radical production by the Fenton CC reaction (By similarity). Required for the survival in the CC presence of oxidative stress. Dps is also a virulence factor that CC activates neutrophils, mast cells and monocytes. It binds to CC neutrophil-glycosphingolipids and to sulfated carbohydrates on CC mucin. It might have a role in the accumulation of neutrophils and CC monocytes at the site of infection. Induces superoxide anion CC generation, adhesion and chemotaxis of neutrophils, through a CC pertussis toxin-sensitive pathway involving MAP kinases. CC {ECO:0000250, ECO:0000269|PubMed:10790422, CC ECO:0000269|PubMed:11069248, ECO:0000269|PubMed:11857341, CC ECO:0000269|PubMed:12672049, ECO:0000269|PubMed:12748264, CC ECO:0000269|PubMed:7768601}. CC -!- CATALYTIC ACTIVITY: 2 Fe(2+) + H(2)O(2) + 2 H(+) = 2 Fe(3+) + 2 CC H(2)O. CC -!- SUBUNIT: Homododecamer. The 12 subunits form a hollow sphere into CC which the mineral iron core of up to 500 Fe(3+) can be deposited. CC {ECO:0000269|PubMed:10564468, ECO:0000269|PubMed:12368104}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. CC -!- DOMAIN: 12 di-nuclear ferroxidase centers are located at the CC interfaces between subunits related by 2-fold symmetry axes. CC {ECO:0000250}. CC -!- MISCELLANEOUS: According to PubMed:12672049, colocalizes with DNA CC but according to PubMed:9228091 it does not interact with DNA. CC -!- SIMILARITY: Belongs to the Dps family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U16121; AAA67928.1; -; Genomic_DNA. DR EMBL; AF284116; AAG28154.1; -; Genomic_DNA. DR EMBL; AF284117; AAG28155.1; -; Genomic_DNA. DR EMBL; AF284118; AAG28156.1; -; Genomic_DNA. DR EMBL; AF284119; AAG28157.1; -; Genomic_DNA. DR EMBL; AF284120; AAG28158.1; -; Genomic_DNA. DR EMBL; AF284121; AAG28159.1; -; Genomic_DNA. DR EMBL; AF227072; AAF37840.1; -; Genomic_DNA. DR EMBL; AF227073; AAF37841.1; -; Genomic_DNA. DR EMBL; AF227074; AAF37842.1; -; Genomic_DNA. DR EMBL; AF227075; AAF37843.1; -; Genomic_DNA. DR EMBL; AF227076; AAF37844.1; -; Genomic_DNA. DR EMBL; AF227077; AAF37845.1; -; Genomic_DNA. DR EMBL; AF227078; AAF37846.1; -; Genomic_DNA. DR EMBL; AF227079; AAF37847.1; -; Genomic_DNA. DR EMBL; AF227080; AAF37848.1; -; Genomic_DNA. DR EMBL; AF227081; AAF37849.1; -; Genomic_DNA. DR EMBL; AB045142; BAA96879.1; -; Genomic_DNA. DR EMBL; AB045143; BAA96880.1; -; Genomic_DNA. DR EMBL; AF432415; AAL27478.1; -; Genomic_DNA. DR EMBL; AF432416; AAL27479.1; -; Genomic_DNA. DR EMBL; AY366361; AAQ72432.1; -; Genomic_DNA. DR EMBL; AY714227; AAU21203.1; -; Genomic_DNA. DR EMBL; DQ341279; ABC68518.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07308.1; -; Genomic_DNA. DR PIR; C64550; C64550. DR RefSeq; NP_207041.1; NC_000915.1. DR RefSeq; WP_000846461.1; NC_018939.1. DR PDB; 1JI4; X-ray; 2.52 A; A/B/C/D/E/F/G/H/I/J/K/L=1-144. DR PDBsum; 1JI4; -. DR ProteinModelPortal; P43313; -. DR SMR; P43313; 1-144. DR DIP; DIP-3296N; -. DR IntAct; P43313; 5. DR MINT; MINT-173438; -. DR STRING; 85962.HP0243; -. DR PaxDb; P43313; -. DR PRIDE; P43313; -. DR EnsemblBacteria; AAD07308; AAD07308; HP_0243. DR GeneID; 898765; -. DR KEGG; heo:C694_01230; -. DR KEGG; hpy:HP0243; -. DR PATRIC; 20591711; VBIHelPyl33062_0254. DR eggNOG; ENOG4108RMU; Bacteria. DR eggNOG; COG0783; LUCA. DR KO; K04047; -. DR OMA; PLHAYSD; -. DR OrthoDB; EOG6Z9B6G; -. DR BioCyc; HPY:HP0243-MONOMER; -. DR EvolutionaryTrace; P43313; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008199; F:ferric iron binding; IEA:InterPro. DR GO; GO:0016722; F:oxidoreductase activity, oxidizing metal ions; IEA:InterPro. DR GO; GO:0006879; P:cellular iron ion homeostasis; IEA:UniProtKB-KW. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 1.20.1260.10; -; 1. DR InterPro; IPR002177; DPS_DNA-bd. DR InterPro; IPR023188; DPS_DNA-bd_CS. DR InterPro; IPR009078; Ferritin-like_SF. DR InterPro; IPR012347; Ferritin-rel. DR InterPro; IPR008331; Ferritin_DPS_dom. DR Pfam; PF00210; Ferritin; 1. DR PIRSF; PIRSF005900; Dps; 1. DR PRINTS; PR01346; HELNAPAPROT. DR SUPFAM; SSF47240; SSF47240; 1. DR PROSITE; PS00818; DPS_1; 1. DR PROSITE; PS00819; DPS_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; KW Iron; Iron storage; Metal-binding; Oxidoreductase; Reference proteome; KW Virulence. FT CHAIN 1 144 DNA protection during starvation protein. FT /FTId=PRO_0000201662. FT METAL 25 25 Iron 1; shared with dodecameric partner. FT {ECO:0000269|PubMed:12368104}. FT METAL 52 52 Iron 1. {ECO:0000269|PubMed:12368104}. FT METAL 56 56 Iron 1. {ECO:0000269|PubMed:12368104}. FT METAL 56 56 Iron 2. {ECO:0000255}. FT VARIANT 9 9 H -> V (in strain: Isolate 96T/FRE). FT VARIANT 35 35 N -> H (in strain: Y06). FT VARIANT 46 46 E -> G (in strain: 5060d, YS8 and Isolate FT 96T/KAD). FT VARIANT 50 50 M -> L (in strain: G21). FT VARIANT 55 56 AE -> EK (in strain: Isolate 96T/ROS). FT VARIANT 58 58 I -> L (in strain: 8826). FT VARIANT 59 59 V -> A (in strain: SS1, G21, YS8, Isolate FT 96T/THO, Isolate 96T/ROS and Isolate 96T/ FT HAR). FT VARIANT 70 70 S -> T (in strain: 1811a and YS2). FT VARIANT 73 73 I -> L (in strain: 8826, SS1, RHO901a, FT G21, 1811a, 5060d, YS2, YS8, Y06, Isolate FT 96T/THO, Isolate 96T/ROS, Isolate 96T/ FT KAD, Isolate 96T/FRE and Isolate 96T/ FT HAR). FT VARIANT 80 80 E -> D (in strain: 8826). FT VARIANT 95 97 ILE -> FLG (in strain: G21). FT VARIANT 97 97 E -> D (in strain: Isolate 96T/ROS). FT VARIANT 97 97 E -> G (in strain: 8826, RHP901a, SS1, FT DB2, Y06, Isolate 96T/THO and Isolate FT 96T/FRE). FT VARIANT 101 101 Y -> H (in strain: 8826, SS1, DB2, FT RHP901a, G21, 2A, 2B, 5A, 5D, 1811a, FT 5060d, YS2, YS8, MI 355, MI 356, MEL- FT HP27, Y06, Isolate 96T/THO, Isolate 96T/ FT ROS, Isolate 96T/KAD, Isolate 96T/FRE, FT Isolate 96T/NEW, Isolate 96T/HAR and ATCC FT 43629). FT VARIANT 107 107 K -> E (in strain: Isolate 96T/KAD). FT VARIANT 140 140 Q -> E (in strain: 8826, SS1, DB2, G21, FT MI 355, MI 356 and Y06). FT CONFLICT 11 11 Q -> G (in Ref. 9). {ECO:0000305}. FT HELIX 3 27 {ECO:0000244|PDB:1JI4}. FT STRAND 28 30 {ECO:0000244|PDB:1JI4}. FT HELIX 33 60 {ECO:0000244|PDB:1JI4}. FT HELIX 69 75 {ECO:0000244|PDB:1JI4}. FT HELIX 88 115 {ECO:0000244|PDB:1JI4}. FT HELIX 119 142 {ECO:0000244|PDB:1JI4}. SQ SEQUENCE 144 AA; 16933 MW; D2EEBD4929A5096D CRC64; MKTFEILKHL QADAIVLFMK VHNFHWNVKG TDFFNVHKAT EEIYEEFADM FDDLAERIVQ LGHHPLVTLS EAIKLTRVKE ETKTSFHSKD IFKEILEDYK YLEKEFKELS NTAEKEGDKV TVTYADDQLA KLQKSIWMLQ AHLA // ID EFG_HELPY Reviewed; 692 AA. AC P56002; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 11-NOV-2015, entry version 107. DE RecName: Full=Elongation factor G; DE Short=EF-G; GN Name=fusA; OrderedLocusNames=HP_1195; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the GTP-dependent ribosomal translocation step CC during translation elongation. During this step, the ribosome CC changes from the pre-translocational (PRE) to the post- CC translocational (POST) state as the newly formed A-site-bound CC peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E CC sites, respectively. Catalyzes the coordinated movement of the two CC tRNA molecules, the mRNA and conformational changes in the CC ribosome (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. EF-G/EF-2 CC subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08239.1; -; Genomic_DNA. DR PIR; C64669; C64669. DR RefSeq; NP_207986.1; NC_000915.1. DR RefSeq; WP_000101814.1; NC_018939.1. DR ProteinModelPortal; P56002; -. DR SMR; P56002; 7-688. DR DIP; DIP-3214N; -. DR IntAct; P56002; 2. DR MINT; MINT-163591; -. DR STRING; 85962.HP1195; -. DR PaxDb; P56002; -. DR PRIDE; P56002; -. DR EnsemblBacteria; AAD08239; AAD08239; HP_1195. DR GeneID; 899957; -. DR KEGG; heo:C694_06180; -. DR KEGG; hpy:HP1195; -. DR PATRIC; 20593747; VBIHelPyl33062_1251. DR eggNOG; ENOG4105CEJ; Bacteria. DR eggNOG; COG0480; LUCA. DR KO; K02355; -. DR OMA; KLGVAIQ; -. DR OrthoDB; EOG6X6RBF; -. DR BioCyc; HPY:HP1195-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.240; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00054_B; EF_G_EF_2_B; 1. DR InterPro; IPR009022; EFG_III-V. DR InterPro; IPR000640; EFG_V. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR004540; Transl_elong_EFG/EF2. DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR Pfam; PF00679; EFG_C; 1. DR Pfam; PF14492; EFG_II; 1. DR Pfam; PF03764; EFG_IV; 1. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SMART; SM00838; EFG_C; 1. DR SMART; SM00889; EFG_IV; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF54980; SSF54980; 2. DR TIGRFAMs; TIGR00484; EF-G; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Elongation factor; GTP-binding; KW Nucleotide-binding; Protein biosynthesis; Reference proteome. FT INIT_MET 1 1 Removed. {ECO:0000250}. FT CHAIN 2 692 Elongation factor G. FT /FTId=PRO_0000091134. FT DOMAIN 8 283 tr-type G. FT NP_BIND 17 24 GTP. {ECO:0000250}. FT NP_BIND 81 85 GTP. {ECO:0000250}. FT NP_BIND 135 138 GTP. {ECO:0000250}. SQ SEQUENCE 692 AA; 77021 MW; 810011C34378E899 CRC64; MARKTPLNRI RNIGIAAHID AGKTTTSERI LFYTGVSHKI GEVHDGAATM DWMEQEKERG ITITSAATTC FWKDHQINLI DTPGHVDFTI EVERSMRVLD GAVSVFCSVG GVQPQSETVW RQANKYGVPR IVFVNKMDRI GANFYNVENQ IKLRLKANPV PINIPIGAED TFIGVIDLVQ MKAIVWNNET MGAKYDVEEI PSDLLEKAKE YREKLVEAVA EQDEALMEKY LGGEELSIEE IKKGIKAGCL NMSLVPMLCG SSFKNKGVQT LLDAVIDYLP APTEVVDIKG IDPKTEEEVF VKSSDDGEFA GLAFKIMTDP FVGQLTFVRV YRGKLESGSY VYNSTKDKKE RVGRLLKMHS NKREDIKEVY AGEICAFVGL KDTLTGDTLC DEKNAVVLER MEFPEPVIHI AVEPKTKADQ EKMGVALGKL AEEDPSFRVM TQEETGQTLI GGMGELHLEI IVDRLKREFK VEAEIGQPQV AFRETIRSSV SKEHKYAKQS GGRGQYGHVF IKLEPKEPGS GYEFVNEISG GVIPKEYIPA VDKGIQEAMQ NGVLAGYPVV DFKVTLYDGS YHDVDSSEMA FKIAGSMAFK EASRAANPVL LEPMMKVEVE VPEEYMGDVI GDLNRRRGQI NSMDDRLGLK IVNAFVPLVE MFGYSTDLRS ATQGRGTYSM EFDHYGEVPS NIAKEIVEKR KG // ID DUT_HELPY Reviewed; 145 AA. AC O25536; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116}; DE Short=dUTPase {ECO:0000255|HAMAP-Rule:MF_00116}; DE EC=3.6.1.23 {ECO:0000255|HAMAP-Rule:MF_00116}; DE AltName: Full=dUTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_00116}; GN Name=dut {ECO:0000255|HAMAP-Rule:MF_00116}; OrderedLocusNames=HP_0865; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This enzyme is involved in nucleotide metabolism: it CC produces dUMP, the immediate precursor of thymidine nucleotides CC and it decreases the intracellular concentration of dUTP so that CC uracil cannot be incorporated into DNA. {ECO:0000255|HAMAP- CC Rule:MF_00116}. CC -!- CATALYTIC ACTIVITY: dUTP + H(2)O = dUMP + diphosphate. CC {ECO:0000255|HAMAP-Rule:MF_00116}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00116}; CC -!- PATHWAY: Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP CC (dUTP route): step 2/2. {ECO:0000255|HAMAP-Rule:MF_00116}. CC -!- SIMILARITY: Belongs to the dUTPase family. {ECO:0000255|HAMAP- CC Rule:MF_00116}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07907.1; -; Genomic_DNA. DR PIR; A64628; A64628. DR RefSeq; NP_207659.1; NC_000915.1. DR RefSeq; WP_000694145.1; NC_018939.1. DR ProteinModelPortal; O25536; -. DR IntAct; O25536; 1. DR STRING; 85962.HP0865; -. DR BindingDB; O25536; -. DR PaxDb; O25536; -. DR PRIDE; O25536; -. DR EnsemblBacteria; AAD07907; AAD07907; HP_0865. DR GeneID; 899394; -. DR KEGG; heo:C694_04430; -. DR KEGG; hpy:HP0865; -. DR PATRIC; 20593019; VBIHelPyl33062_0897. DR eggNOG; ENOG4108Z1K; Bacteria. DR eggNOG; COG0756; LUCA. DR KO; K01520; -. DR OMA; HERAEWI; -. DR OrthoDB; EOG689HXK; -. DR BioCyc; HPY:HP0865-MONOMER; -. DR UniPathway; UPA00610; UER00666. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004170; F:dUTP diphosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006226; P:dUMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0046080; P:dUTP metabolic process; IEA:InterPro. DR Gene3D; 2.70.40.10; -; 1. DR HAMAP; MF_00116; dUTPase_bact; 1. DR InterPro; IPR029054; dUTPase-like. DR InterPro; IPR008180; dUTPase/dCTP_deaminase. DR InterPro; IPR008181; dUTPase_1. DR Pfam; PF00692; dUTPase; 1. DR SUPFAM; SSF51283; SSF51283; 1. DR TIGRFAMs; TIGR00576; dut; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Magnesium; Metal-binding; KW Nucleotide metabolism; Reference proteome. FT CHAIN 1 145 Deoxyuridine 5'-triphosphate FT nucleotidohydrolase. FT /FTId=PRO_0000182869. FT REGION 62 64 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00116}. FT REGION 79 81 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00116}. FT BINDING 75 75 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00116}. FT BINDING 89 89 Substrate; via amide nitrogen and FT carbonyl oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00116}. SQ SEQUENCE 145 AA; 15801 MW; 98504D2FC8605013 CRC64; MKIKIQKIHP NALIPKYQTD GSSGFDLHAV EEVMIKPHSV GLVKIGICLS LEVGYELQVR TRSGLALNHQ VMVLNSPGTV DNDYRGEIKV ILANLSDKDF KVQVGDRIAQ GVVQKTYKAE FIECEQLDET SRGSGGFGST GVSKA // ID EFTU_HELPY Reviewed; 399 AA. AC P56003; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; DE Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118}; GN Name=tuf {ECO:0000255|HAMAP-Rule:MF_00118}; Synonyms=tufA; GN OrderedLocusNames=HP_1205; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein promotes the GTP-dependent binding of CC aminoacyl-tRNA to the A-site of ribosomes during protein CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_00118}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00118}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00118}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00118}. CC -!- SIMILARITY: Contains 1 tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08250.1; -; Genomic_DNA. DR PIR; E64670; E64670. DR RefSeq; NP_207997.1; NC_000915.1. DR RefSeq; WP_001040579.1; NC_018939.1. DR ProteinModelPortal; P56003; -. DR SMR; P56003; 2-399. DR DIP; DIP-3215N; -. DR IntAct; P56003; 4. DR MINT; MINT-171855; -. DR STRING; 85962.HP1205; -. DR PaxDb; P56003; -. DR PRIDE; P56003; -. DR EnsemblBacteria; AAD08250; AAD08250; HP_1205. DR GeneID; 899043; -. DR KEGG; heo:C694_06240; -. DR KEGG; hpy:HP1205; -. DR PATRIC; 20593773; VBIHelPyl33062_1263. DR eggNOG; ENOG4105CGV; Bacteria. DR eggNOG; COG0050; LUCA. DR KO; K02358; -. DR OMA; NIKMVVN; -. DR OrthoDB; EOG6R5C6X; -. DR BioCyc; HPY:HP1205-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00118_B; EF_Tu_B; 1. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR009001; Transl_elong_EF1A/Init_IF2_C. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR InterPro; IPR004541; Transl_elong_EFTu/EF1A_bac/org. DR InterPro; IPR004160; Transl_elong_EFTu/EF1A_C. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR Pfam; PF03143; GTP_EFTU_D3; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF50465; SSF50465; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00485; EF-Tu; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Elongation factor; GTP-binding; KW Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 399 Elongation factor Tu. FT /FTId=PRO_0000091333. FT DOMAIN 10 209 tr-type G. FT NP_BIND 19 26 GTP. {ECO:0000255|HAMAP-Rule:MF_00118}. FT NP_BIND 81 85 GTP. {ECO:0000255|HAMAP-Rule:MF_00118}. FT NP_BIND 136 139 GTP. {ECO:0000255|HAMAP-Rule:MF_00118}. FT REGION 19 26 G1. {ECO:0000250}. FT REGION 60 64 G2. {ECO:0000250}. FT REGION 81 84 G3. {ECO:0000250}. FT REGION 136 139 G4. {ECO:0000250}. FT REGION 174 176 G5. {ECO:0000250}. SQ SEQUENCE 399 AA; 43648 MW; 502751637BDA2707 CRC64; MAKEKFNRTK PHVNIGTIGH VDHGKTTLSA AISAVLSLKG LAEMKDYDNI DNAPEEKERG ITIATSHIEY ETENRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI LLSRQVGVPH IVVFLNKQDM VDDQELLELV EMEVRELLSA YEFPGDDTPI VAGSALRALE EAKAGNVGEW GEKVLKLMAE VDAYIPTPER DTEKTFLMPV EDVFSIAGRG TVVTGRIERG VVKVGDEVEI VGIRPTQKTT VTGVEMFRKE LEKGEAGDNV GVLLRGTKKE EVERGMVLCK PGSITPHKKF EGEIYVLSKE EGGRHTPFFT NYRPQFYVRT TDVTGSITLP EGVEMVMPGD NVKITVELIS PVALELGTKF AIREGGRTVG AGVVSNIIE // ID EFTS_HELPY Reviewed; 355 AA. AC P55975; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Elongation factor Ts; DE Short=EF-Ts; GN Name=tsf; OrderedLocusNames=HP_1555; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Associates with the EF-Tu.GDP complex and induces the CC exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- CC Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By CC similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the EF-Ts family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08595.1; -; Genomic_DNA. DR PIR; C64714; C64714. DR RefSeq; NP_208346.1; NC_000915.1. DR RefSeq; WP_000014397.1; NC_018939.1. DR ProteinModelPortal; P55975; -. DR STRING; 85962.HP1555; -. DR PaxDb; P55975; -. DR PRIDE; P55975; -. DR EnsemblBacteria; AAD08595; AAD08595; HP_1555. DR GeneID; 899736; -. DR KEGG; heo:C694_08055; -. DR KEGG; hpy:HP1555; -. DR PATRIC; 20594533; VBIHelPyl33062_1634. DR eggNOG; ENOG4105CU7; Bacteria. DR eggNOG; COG0264; LUCA. DR KO; K02357; -. DR OMA; AAMKPQV; -. DR OrthoDB; EOG66B42N; -. DR BioCyc; HPY:HP1555-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.479.20; -; 3. DR HAMAP; MF_00050; EF_Ts; 1. DR InterPro; IPR001816; Transl_elong_EFTs/EF1B. DR InterPro; IPR014039; Transl_elong_EFTs/EF1B_dimer. DR InterPro; IPR018101; Transl_elong_Ts_CS. DR InterPro; IPR009060; UBA-like. DR PANTHER; PTHR11741; PTHR11741; 2. DR Pfam; PF00889; EF_TS; 1. DR SUPFAM; SSF46934; SSF46934; 1. DR SUPFAM; SSF54713; SSF54713; 3. DR TIGRFAMs; TIGR00116; tsf; 1. DR PROSITE; PS01126; EF_TS_1; 1. DR PROSITE; PS01127; EF_TS_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Elongation factor; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 355 Elongation factor Ts. FT /FTId=PRO_0000161131. FT REGION 82 85 Involved in Mg(2+) ion dislocation from FT EF-Tu. {ECO:0000250}. SQ SEQUENCE 355 AA; 39695 MW; A029F9BC57C7F101 CRC64; MSGISAQLVK KLRDLTDAGM MDCKKALVEV AGDLQKAIDF LREKGLSKAA KKADRIAAEG VVALEVAPDF KSAMIVEINS ETDFVAKNEG FKELVKKTLE TIKAHNIHTT EELLKSPLDN KPFEEYLHSQ IAVIGENILV RKIAHLKAPS SHIINGYAHS NARVGVLIGI KYDNEKNAPK VVELARNIAM HAAAMKPQVL DCKDFSLDFV KKETLALIAE IEKDNEEAKR LGKPLKNIPT FGSRIELSDE VLAHQKKAFE DELKAQGKPE KIWDKIVPGK MERFIADNTL IDQRLTLLGQ FYVMDDKKTI AQVVADCSKE WNDDLKITEY VRFELGEGIE KKAENFAEEV ALQMK // ID ENGB_HELPY Reviewed; 208 AA. AC O26087; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Probable GTP-binding protein EngB {ECO:0000255|HAMAP-Rule:MF_00321}; GN Name=engB {ECO:0000255|HAMAP-Rule:MF_00321}; GN OrderedLocusNames=HP_1567; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Necessary for normal cell division and for the CC maintenance of normal septation. {ECO:0000255|HAMAP- CC Rule:MF_00321}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00321}; CC -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- CC like GTPase superfamily. EngB GTPase family. {ECO:0000255|HAMAP- CC Rule:MF_00321}. CC -!- SIMILARITY: Contains 1 EngB-type G (guanine nucleotide-binding) CC domain. {ECO:0000255|HAMAP-Rule:MF_00321}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08606.1; -; Genomic_DNA. DR PIR; G64715; G64715. DR RefSeq; NP_208358.1; NC_000915.1. DR RefSeq; WP_000635404.1; NC_018939.1. DR ProteinModelPortal; O26087; -. DR DIP; DIP-3106N; -. DR IntAct; O26087; 2. DR MINT; MINT-184566; -. DR STRING; 85962.HP1567; -. DR PaxDb; O26087; -. DR PRIDE; O26087; -. DR EnsemblBacteria; AAD08606; AAD08606; HP_1567. DR GeneID; 899724; -. DR KEGG; heo:C694_08120; -. DR KEGG; hpy:HP1567; -. DR PATRIC; 20594561; VBIHelPyl33062_1648. DR eggNOG; ENOG4105WHM; Bacteria. DR eggNOG; COG0218; LUCA. DR KO; K03978; -. DR OMA; SQLFQCP; -. DR OrthoDB; EOG6ND0NG; -. DR BioCyc; HPY:HP1567-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000917; P:barrier septum assembly; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00321; GTPase_EngB; 1. DR InterPro; IPR030393; G_ENGB_dom. DR InterPro; IPR019987; GTP-bd_ribosome_bio_YsxC. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01926; MMR_HSR1; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR03598; GTPase_YsxC; 1. DR PROSITE; PS51706; G_ENGB; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Complete proteome; GTP-binding; Magnesium; KW Metal-binding; Nucleotide-binding; Reference proteome; Septation. FT CHAIN 1 208 Probable GTP-binding protein EngB. FT /FTId=PRO_0000157753. FT DOMAIN 23 205 EngB-type G. {ECO:0000255|HAMAP- FT Rule:MF_00321}. FT NP_BIND 31 38 GTP. {ECO:0000255|HAMAP-Rule:MF_00321}. FT NP_BIND 57 61 GTP. {ECO:0000255|HAMAP-Rule:MF_00321}. FT NP_BIND 84 87 GTP. {ECO:0000255|HAMAP-Rule:MF_00321}. FT NP_BIND 154 157 GTP. {ECO:0000255|HAMAP-Rule:MF_00321}. FT NP_BIND 182 184 GTP. {ECO:0000255|HAMAP-Rule:MF_00321}. FT METAL 38 38 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00321}. FT METAL 59 59 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00321}. SQ SEQUENCE 208 AA; 23559 MW; 72496B7891427F4C CRC64; MIVIKDAHFL TSSSQLFQCP ASLTSEMVVL GRSNVGKSSF INTLLGKNLA KSSATPGKTR LANFFSTTWE DKENALRATF NVIDLPGFGY AKVSKSLKKE WEGFLWELLS VRVSIKLFIH LVDARHLDLE IDKNAKENIQ ALLRPDQAYL SLFTKFDKLN KNEQHRLFLN APKPFLINTA HFNALSSKYP TLEIVRQTLL KHLLTNPL // ID EPTA_HELPY Reviewed; 521 AA. AC O24867; Q1PDD3; DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 96. DE RecName: Full=Phosphoethanolamine transferase EptA {ECO:0000305}; DE EC=2.7.-.- {ECO:0000305}; DE AltName: Full=Lipid A 1-phosphoethanolamine transferase {ECO:0000303|PubMed:15489235}; GN Name=eptA {ECO:0000303|PubMed:15489235}; GN OrderedLocusNames=HP_0022, C694_00105; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, PATHWAY, SUBSTRATE RP SPECIFICITY, SUBCELLULAR LOCATION, AND STRUCTURE OF LIPID A. RC STRAIN=ATCC 700392 / 26695; RX PubMed=15489235; DOI=10.1074/jbc.M406480200; RA Tran A.X., Karbarz M.J., Wang X., Raetz C.R., McGrath S.C., RA Cotter R.J., Trent M.S.; RT "Periplasmic cleavage and modification of the 1-phosphate group of RT Helicobacter pylori lipid A."; RL J. Biol. Chem. 279:55780-55791(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Probably catalyzes the addition of a phosphoethanolamine CC moiety to the dephosphorylated 1-position of the disaccharide CC backbone of lipid A. Lipid A that is 1-phosphorylated is not a CC substrate for this enzyme. {ECO:0000269|PubMed:15489235}. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS lipid A CC biosynthesis. {ECO:0000305|PubMed:15489235}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000250|UniProtKB:P36555}; Multi-pass membrane protein CC {ECO:0000250|UniProtKB:P36555}. CC -!- MISCELLANEOUS: In this organism most lipid A is tetraacylated CC without a phosphate group at the 4'-position and has a CC phosphoethanolamine residue at the 1-position. CC {ECO:0000269|PubMed:15489235}. CC -!- SIMILARITY: Belongs to the phosphoethanolamine transferase family. CC EptA subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ447325; ABE02822.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07089.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41242.1; -; Genomic_DNA. DR PIR; F64522; F64522. DR RefSeq; NP_206824.1; NC_000915.1. DR RefSeq; WP_000157542.1; NC_018939.1. DR ProteinModelPortal; O24867; -. DR STRING; 85962.HP0022; -. DR PaxDb; O24867; -. DR PRIDE; O24867; -. DR EnsemblBacteria; AAD07089; AAD07089; HP_0022. DR EnsemblBacteria; AFV41242; AFV41242; C694_00105. DR GeneID; 899105; -. DR KEGG; heo:C694_00105; -. DR KEGG; hpy:HP0022; -. DR PATRIC; 20591239; VBIHelPyl33062_0021. DR eggNOG; ENOG4105DIJ; Bacteria. DR eggNOG; COG2194; LUCA. DR KO; K03760; -. DR OMA; FKNNAYE; -. DR OrthoDB; EOG62ZHS6; -. DR BioCyc; HPY:HP0022-MONOMER; -. DR UniPathway; UPA00973; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016780; F:phosphotransferase activity, for other substituted phosphate groups; IDA:UniProtKB. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.720.10; -; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR012549; DUF1705. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF08019; DUF1705; 1. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; KW Lipid A biosynthesis; Lipid biosynthesis; Lipid metabolism; KW Lipopolysaccharide biosynthesis; Membrane; Reference proteome; KW Transferase; Transmembrane; Transmembrane helix. FT CHAIN 1 521 Phosphoethanolamine transferase EptA. FT /FTId=PRO_0000432500. FT TRANSMEM 18 38 Helical; Name=1. {ECO:0000255}. FT TRANSMEM 47 67 Helical; Name=2. {ECO:0000255}. FT TRANSMEM 79 99 Helical; Name=3. {ECO:0000255}. FT TRANSMEM 118 138 Helical; Name=4. {ECO:0000255}. FT TRANSMEM 150 170 Helical; Name=5. {ECO:0000255}. FT TRANSMEM 182 202 Helical; Name=6. {ECO:0000255}. SQ SEQUENCE 521 AA; 58859 MW; 96C20817A166FD79 CRC64; MASLFHLRFL KPLSCLQAGL LYSLIFGVLY HFPLFVYVYK ESNQVSFIAM MVVVLFCVNG ALFLALGLIS ASLMRWSAIV FSLLNSVAFY FISAYKVFLN KSMMGNVLNT NTHEVLGFLS VKLFVFIVVF GVLPGYVIYK IPLKNSSKKA PFLAILALVF IFIASALANT KNWLWFDKHA KFIGGLILPF AYSVNAFRVS ALKFFAPTIK PLPLFSPNHS HSFVVLVIGE SARKHNYALY GYQKPTTPRL SKRLADNELT LFNATSCATY TTASLECILD SSFKNNAYEN LPTYLTKAGI KVFWYSANDG EKNVKVTSYL KNYELIQKCP NCEAIAPYDE SLLYNLPDLL KEHSNENVLL ILHLAGSHGP NYDNKVPLNF RVFKPYCSSA DLSSCSKESL INAYDNTIFY NDYLLDKIIS MLENAKQPAL MIYLSDHGES LGEEAFYLHG IPKSIAPKEQ YEIPFIVYAN EPFKEKHSII QTQTPINQNV IFHSVLGVFL DFKNPSVVYR PSLDLLKHKK E // ID ERA_HELPY Reviewed; 301 AA. AC P56059; P96520; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-NOV-2015, entry version 103. DE RecName: Full=GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; GN Name=era {ECO:0000255|HAMAP-Rule:MF_00367}; OrderedLocusNames=HP_0517; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RA Akopyants N.S., Kersulyte D., Clifton S.W., Youree B.E., Reece C.A., RA Roe B.A., Berg D.E.; RT "The Cag pathogenicity island of Helicobacter pylori."; RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: An essential GTPase that binds both GDP and GTP, with CC rapid nucleotide exchange. Plays a role in 16S rRNA processing and CC 30S ribosomal subunit biogenesis and possibly also in cell cycle CC regulation and energy metabolism. {ECO:0000255|HAMAP- CC Rule:MF_00367}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00367}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Cell inner membrane CC {ECO:0000255|HAMAP-Rule:MF_00367}; Peripheral membrane protein CC {ECO:0000255|HAMAP-Rule:MF_00367}. CC -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- CC like GTPase superfamily. Era GTPase family. {ECO:0000255|HAMAP- CC Rule:MF_00367}. CC -!- SIMILARITY: Contains 1 Era-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 KH type-2 domain. {ECO:0000255|HAMAP- CC Rule:MF_00367}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07585.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07585.1; ALT_INIT; Genomic_DNA. DR EMBL; AC000108; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; E64584; E64584. DR RefSeq; NP_207314.1; NC_000915.1. DR RefSeq; WP_000978372.1; NC_000915.1. DR RefSeq; WP_001862438.1; NC_018939.1. DR ProteinModelPortal; P56059; -. DR STRING; 85962.HP0517; -. DR PaxDb; P56059; -. DR EnsemblBacteria; AAD07585; AAD07585; HP_0517. DR GeneID; 899265; -. DR KEGG; heo:C694_02660; -. DR KEGG; hpy:HP0517; -. DR PATRIC; 20592311; VBIHelPyl33062_0544. DR eggNOG; ENOG4105CWT; Bacteria. DR eggNOG; COG1159; LUCA. DR KO; K03595; -. DR OMA; KVAKDWQ; -. DR OrthoDB; EOG68DD1Q; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070181; F:small ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.300.20; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00367; GTPase_Era; 1. DR InterPro; IPR030388; G_ERA_dom. DR InterPro; IPR005662; GTP-bd_Era. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR004044; KH_dom_type_2. DR InterPro; IPR009019; KH_prok-type. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR Pfam; PF07650; KH_2; 1. DR Pfam; PF01926; MMR_HSR1; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54814; SSF54814; 1. DR TIGRFAMs; TIGR00436; era; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS51713; G_ERA; 1. DR PROSITE; PS50823; KH_TYPE_2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Cytoplasm; KW GTP-binding; Membrane; Nucleotide-binding; Reference proteome; KW Ribosome biogenesis; RNA-binding; rRNA-binding. FT CHAIN 1 301 GTPase Era. FT /FTId=PRO_0000180018. FT DOMAIN 4 173 Era-type G. FT DOMAIN 204 280 KH type-2. {ECO:0000255|HAMAP- FT Rule:MF_00367}. FT NP_BIND 12 19 GTP. {ECO:0000255|HAMAP-Rule:MF_00367}. FT NP_BIND 64 68 GTP. {ECO:0000255|HAMAP-Rule:MF_00367}. FT NP_BIND 122 125 GTP. {ECO:0000255|HAMAP-Rule:MF_00367}. FT CONFLICT 55 55 W -> G (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 111 111 S -> N (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 141 141 Q -> K (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 143 143 D -> S (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 148 148 A -> D (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 162 162 A -> T (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 169 170 QH -> KY (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 257 257 N -> S (in Ref. 2; AC000108). FT {ECO:0000305}. FT CONFLICT 296 297 HR -> YQ (in Ref. 2; AC000108). FT {ECO:0000305}. SQ SEQUENCE 301 AA; 34591 MW; BB9283013A3AA07C CRC64; MKTKAGFVAL IGKPNAGKST LLNTLLNAHL ALVSHKANAT RKLMKCIVPF KDKEWYESQI IFLDTPGLHH QEKLLNQCML SQALKAMGDA ELCVFLASVH DDLKGYEEFL SLCQKPHILA LSKIDTATHK QVLQKLQEYQ QYDSQFLALV PLSAKKSQNL NALLECISQH LSPSAWLFEK DLMSDEKMRD IYKEIIRESL FDFLSDEIPY ESDVMIDKFI EEERIDKVYA RIIVEKESQK KIVIGKNGVN IKRIGTNARL KMQEVGEKKV FLNLQVIAQK SWSKEEKSLQ KLGYIHRRNR D // ID EXBL2_HELPY Reviewed; 150 AA. AC O25986; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Putative biopolymer transport protein ExbB-like 2; GN OrderedLocusNames=HP_1445; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ExbB/TolQ family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08483.1; -; Genomic_DNA. DR PIR; E64700; E64700. DR RefSeq; NP_208236.1; NC_000915.1. DR RefSeq; WP_000661840.1; NC_018939.1. DR ProteinModelPortal; O25986; -. DR STRING; 85962.HP1445; -. DR PaxDb; O25986; -. DR PRIDE; O25986; -. DR EnsemblBacteria; AAD08483; AAD08483; HP_1445. DR GeneID; 899849; -. DR KEGG; heo:C694_07485; -. DR KEGG; hpy:HP1445; -. DR PATRIC; 20594297; VBIHelPyl33062_1517. DR eggNOG; ENOG4105M8K; Bacteria. DR eggNOG; COG0811; LUCA. DR KO; K03561; -. DR OMA; SIGANAP; -. DR OrthoDB; EOG6JDWB5; -. DR BioCyc; HPY:HP1445-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR InterPro; IPR002898; MotA_ExbB_proton_chnl. DR InterPro; IPR014172; TonB_ExbB_2. DR Pfam; PF01618; MotA_ExbB; 1. DR TIGRFAMs; TIGR02805; exbB2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 150 Putative biopolymer transport protein FT ExbB-like 2. FT /FTId=PRO_0000145817. FT TRANSMEM 5 25 Helical. {ECO:0000255}. FT TRANSMEM 63 83 Helical. {ECO:0000255}. FT TRANSMEM 97 117 Helical. {ECO:0000255}. SQ SEQUENCE 150 AA; 16638 MW; DA3151C3B39F25D9 CRC64; MKEMVDYGII GFLIFLSVIV IAIAIERLWF FATLRVDDYT DRRKLELALH KRLTLVATIG SNAPYIGLLG TVMGIMLTFM DLGSASGIDT KAIMTNLALA LKATGMGLLV AIPAIVIYNL LVRKSEILVT KWDIFHHPVD TQSHEIYSKA // ID ENO_HELPY Reviewed; 426 AA. AC P48285; DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-MAY-2016, entry version 116. DE RecName: Full=Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; DE EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318}; DE AltName: Full=2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; DE AltName: Full=2-phosphoglycerate dehydratase {ECO:0000255|HAMAP-Rule:MF_00318}; GN Name=eno {ECO:0000255|HAMAP-Rule:MF_00318}; OrderedLocusNames=HP_0154; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-178. RC STRAIN=ATCC 53726 / 84-183; RX PubMed=7768597; RA Thompson S.A., Blaser M.J.; RT "Isolation of the Helicobacter pylori recA gene and involvement of the RT recA region in resistance to low pH."; RL Infect. Immun. 63:2185-2193(1995). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-68. RC STRAIN=69A; RX PubMed=7476856; DOI=10.1007/BF02423452; RA Schmitt W., Odenbreit S., Heuermann D., Haas R.; RT "Cloning of the Helicobacter pylori recA gene and functional RT characterization of its product."; RL Mol. Gen. Genet. 248:563-572(1995). CC -!- FUNCTION: Catalyzes the reversible conversion of 2- CC phosphoglycerate into phosphoenolpyruvate. It is essential for the CC degradation of carbohydrates via glycolysis. {ECO:0000255|HAMAP- CC Rule:MF_00318}. CC -!- CATALYTIC ACTIVITY: 2-phospho-D-glycerate = phosphoenolpyruvate + CC H(2)O. {ECO:0000255|HAMAP-Rule:MF_00318}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00318}; CC -!- ENZYME REGULATION: The covalent binding to the substrate causes CC inactivation of the enzyme, and possibly serves as a signal for CC the export of the protein. {ECO:0000255|HAMAP-Rule:MF_00318}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 4/5. {ECO:0000255|HAMAP- CC Rule:MF_00318}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00318}. CC Secreted {ECO:0000255|HAMAP-Rule:MF_00318}. Cell surface CC {ECO:0000255|HAMAP-Rule:MF_00318}. Note=Fractions of enolase are CC present in both the cytoplasm and on the cell surface. The export CC of enolase possibly depends on the covalent binding to the CC substrate; once secreted, it remains attached to the cell surface. CC {ECO:0000255|HAMAP-Rule:MF_00318}. CC -!- SIMILARITY: Belongs to the enolase family. {ECO:0000255|HAMAP- CC Rule:MF_00318}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07219.1; -; Genomic_DNA. DR EMBL; U13756; AAC43380.1; -; Genomic_DNA. DR EMBL; Z35478; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; B64539; S58684. DR RefSeq; NP_206953.1; NC_000915.1. DR RefSeq; WP_000955673.1; NC_018939.1. DR ProteinModelPortal; P48285; -. DR SMR; P48285; 3-425. DR DIP; DIP-3344N; -. DR IntAct; P48285; 3. DR MINT; MINT-179721; -. DR STRING; 85962.HP0154; -. DR PaxDb; P48285; -. DR PRIDE; P48285; -. DR EnsemblBacteria; AAD07219; AAD07219; HP_0154. DR GeneID; 898806; -. DR KEGG; heo:C694_00770; -. DR KEGG; hpy:HP0154; -. DR PATRIC; 20591529; VBIHelPyl33062_0164. DR eggNOG; ENOG4105C70; Bacteria. DR eggNOG; COG0148; LUCA. DR KO; K01689; -. DR OMA; EFMIIPV; -. DR OrthoDB; EOG65J589; -. DR BioCyc; HPY:HP0154-MONOMER; -. DR UniPathway; UPA00109; UER00187. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009986; C:cell surface; IEA:UniProtKB-SubCell. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0000015; C:phosphopyruvate hydratase complex; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004634; F:phosphopyruvate hydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.120; -; 1. DR Gene3D; 3.30.390.10; -; 1. DR HAMAP; MF_00318; Enolase; 1. DR InterPro; IPR000941; Enolase. DR InterPro; IPR020810; Enolase_C. DR InterPro; IPR029065; Enolase_C-like. DR InterPro; IPR020809; Enolase_CS. DR InterPro; IPR020811; Enolase_N. DR InterPro; IPR029017; Enolase_N-like. DR PANTHER; PTHR11902; PTHR11902; 1. DR Pfam; PF00113; Enolase_C; 1. DR Pfam; PF03952; Enolase_N; 1. DR PIRSF; PIRSF001400; Enolase; 1. DR PRINTS; PR00148; ENOLASE. DR SMART; SM01192; Enolase_C; 1. DR SMART; SM01193; Enolase_N; 1. DR SUPFAM; SSF51604; SSF51604; 1. DR SUPFAM; SSF54826; SSF54826; 1. DR TIGRFAMs; TIGR01060; eno; 1. DR PROSITE; PS00164; ENOLASE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Glycolysis; Lyase; Magnesium; KW Metal-binding; Reference proteome; Secreted. FT CHAIN 1 426 Enolase. FT /FTId=PRO_0000133897. FT REGION 365 368 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT ACT_SITE 205 205 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT ACT_SITE 338 338 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT METAL 242 242 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT METAL 286 286 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT METAL 313 313 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT BINDING 155 155 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT BINDING 164 164 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT BINDING 286 286 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT BINDING 313 313 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT BINDING 338 338 Substrate (covalent); in inhibited form. FT {ECO:0000255|HAMAP-Rule:MF_00318}. FT BINDING 389 389 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00318}. FT CONFLICT 26 26 V -> I (in Ref. 2 and 3). {ECO:0000305}. FT CONFLICT 85 85 I -> T (in Ref. 2; AAC43380). FT {ECO:0000305}. SQ SEQUENCE 426 AA; 46534 MW; 7B7A0B87A5DFB398 CRC64; MLTIKDIHAL EVMDSRGNPT IQASVVLSDN TKASAIVPSG ASTGKREALE LRDNDKTRFL GKGVLRACEN VNSVIKHHLI GLEAINQAFV DERLRALDGT PNYANLGANA VLGVSMALAR ASAKALNLPL YRYLGGANAL TLPVPMLNII NGGTHANNSI DFQEYMIMPL GFESFKEALR ASAEVYHTLK KLLDGKNQLT SVGDEGGFAP NFSNNVEPLE VISQAIEKAG YKLGEEIALA LDVASSELVD ENFNYHLKGE NKILDSHELV AYYKELVAKY PIVSIEDGLS EDDWEGWAFL SKELGRQIQL VGDDLFVTNA SLLQKGIEKN IANAVLIKPN QIGTISETLE TIRLAKHHAY QCVMSHRSGE SEDSFIADFA VALNTGEIKT GSTARSERIA KYNRLLEIEH ELKGGIYIGK ELFKHG // ID FABH_HELPY Reviewed; 331 AA. AC O24994; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000255|HAMAP-Rule:MF_01815}; DE EC=2.3.1.180 {ECO:0000255|HAMAP-Rule:MF_01815}; DE AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; DE AltName: Full=Beta-ketoacyl-ACP synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; DE Short=KAS III {ECO:0000255|HAMAP-Rule:MF_01815}; GN Name=fabH {ECO:0000255|HAMAP-Rule:MF_01815}; GN OrderedLocusNames=HP_0202; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the condensation reaction of fatty acid CC synthesis by the addition to an acyl acceptor of two carbons from CC malonyl-ACP. Catalyzes the first condensation reaction which CC initiates fatty acid synthesis and may therefore play a role in CC governing the total rate of fatty acid production. Possesses both CC acetoacetyl-ACP synthase and acetyl transacylase activities. Its CC substrate specificity determines the biosynthesis of branched- CC chain and/or straight-chain of fatty acids. {ECO:0000255|HAMAP- CC Rule:MF_01815}. CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + malonyl-[acyl-carrier-protein] = CC acetoacetyl-[acyl-carrier-protein] + CoA + CO(2). CC {ECO:0000255|HAMAP-Rule:MF_01815}. CC -!- PATHWAY: Lipid metabolism; fatty acid biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_01815}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01815}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01815}. CC -!- DOMAIN: The last Arg residue of the ACP-binding site is essential CC for the weak association between ACP/AcpP and FabH. CC {ECO:0000255|HAMAP-Rule:MF_01815}. CC -!- SIMILARITY: Belongs to the FabH family. {ECO:0000255|HAMAP- CC Rule:MF_01815}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07270.1; -; Genomic_DNA. DR PIR; B64545; B64545. DR RefSeq; NP_207001.1; NC_000915.1. DR RefSeq; WP_000397786.1; NC_018939.1. DR ProteinModelPortal; O24994; -. DR STRING; 85962.HP0202; -. DR PaxDb; O24994; -. DR PRIDE; O24994; -. DR EnsemblBacteria; AAD07270; AAD07270; HP_0202. DR GeneID; 899062; -. DR KEGG; heo:C694_01005; -. DR KEGG; hpy:HP0202; -. DR PATRIC; 20591625; VBIHelPyl33062_0212. DR eggNOG; ENOG4105CCZ; Bacteria. DR eggNOG; COG0332; LUCA. DR KO; K00648; -. DR OMA; ESGMYEN; -. DR OrthoDB; EOG6J74XN; -. DR BioCyc; HPY:HP0202-MONOMER; -. DR UniPathway; UPA00094; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004315; F:3-oxoacyl-[acyl-carrier-protein] synthase activity; IEA:InterPro. DR GO; GO:0033818; F:beta-ketoacyl-acyl-carrier-protein synthase III activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.47.10; -; 2. DR HAMAP; MF_01815; FabH; 1. DR InterPro; IPR013751; ACP_syn_III. DR InterPro; IPR013747; ACP_syn_III_C. DR InterPro; IPR004655; FabH_synth. DR InterPro; IPR016039; Thiolase-like. DR Pfam; PF08545; ACP_syn_III; 1. DR Pfam; PF08541; ACP_syn_III_C; 1. DR SUPFAM; SSF53901; SSF53901; 1. DR TIGRFAMs; TIGR00747; fabH; 1. PE 3: Inferred from homology; KW Acyltransferase; Complete proteome; Cytoplasm; KW Fatty acid biosynthesis; Fatty acid metabolism; Lipid biosynthesis; KW Lipid metabolism; Multifunctional enzyme; Reference proteome; KW Transferase. FT CHAIN 1 331 3-oxoacyl-[acyl-carrier-protein] synthase FT 3. FT /FTId=PRO_0000110434. FT REGION 256 260 ACP-binding. {ECO:0000255|HAMAP- FT Rule:MF_01815}. FT ACT_SITE 115 115 {ECO:0000255|HAMAP-Rule:MF_01815}. FT ACT_SITE 255 255 {ECO:0000255|HAMAP-Rule:MF_01815}. FT ACT_SITE 285 285 {ECO:0000255|HAMAP-Rule:MF_01815}. SQ SEQUENCE 331 AA; 36469 MW; FFB574E8259B10AD CRC64; MEFYASLKSI AMHVPSERVK NAEFQQFLDT SDEWIEKRTG IKERRFANDE EKSSDLGVIA AKQAIERAHL TPKDIDLVVV ATLSPDFLAM PSTACVLSAK LGIENKPAFD ISAACTGFIY LLSVAKAYVE SGMYENVLIV GAEKTSSVLD FKDRGTCILF GDGAGACVIG RTKRLKESIL DVQISANGNF SNYLYTPRTL KPTPFNAKEE ASEPFLCMKG NEVFKLAVKT LLKDVEMILE KNALKPEDVR LFIPHQANFR IIQAVREHLD FKDEQVVLTV HKYGNTSAAS IPMAMGEAYE EGRLKKGDLM LLDAFGGGLT WGSALVYFGG S // ID EX7S_HELPY Reviewed; 86 AA. AC O26016; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Exodeoxyribonuclease 7 small subunit; DE EC=3.1.11.6; DE AltName: Full=Exodeoxyribonuclease VII small subunit; DE Short=Exonuclease VII small subunit; GN Name=xseB; OrderedLocusNames=HP_1482; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Bidirectionally degrades single-stranded DNA into large CC acid-insoluble oligonucleotides, which are then degraded further CC into small acid-soluble oligonucleotides. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Exonucleolytic cleavage in either 5'- to 3'- CC or 3'- to 5'-direction to yield nucleoside 5'-phosphates. CC -!- SUBUNIT: Heterooligomer composed of large and small subunits. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the XseB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08532.1; -; Genomic_DNA. DR PIR; B64705; B64705. DR RefSeq; NP_208273.1; NC_000915.1. DR RefSeq; WP_001150347.1; NC_018939.1. DR ProteinModelPortal; O26016; -. DR DIP; DIP-3744N; -. DR IntAct; O26016; 19. DR MINT; MINT-171139; -. DR STRING; 85962.HP1482; -. DR PaxDb; O26016; -. DR PRIDE; O26016; -. DR EnsemblBacteria; AAD08532; AAD08532; HP_1482. DR GeneID; 899810; -. DR KEGG; heo:C694_07675; -. DR KEGG; hpy:HP1482; -. DR PATRIC; 20594375; VBIHelPyl33062_1556. DR eggNOG; COG1722; LUCA. DR KO; K03602; -. DR OMA; TKNTKNA; -. DR OrthoDB; EOG69KV31; -. DR BioCyc; HPY:HP1482-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro. DR GO; GO:0008855; F:exodeoxyribonuclease VII activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006308; P:DNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.1040; -; 1. DR HAMAP; MF_00337; Exonuc_7_S; 1. DR InterPro; IPR003761; Exonuc_VII_S. DR Pfam; PF02609; Exonuc_VII_S; 1. DR TIGRFAMs; TIGR01280; xseB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Exonuclease; Hydrolase; Nuclease; KW Reference proteome. FT CHAIN 1 86 Exodeoxyribonuclease 7 small subunit. FT /FTId=PRO_0000206954. SQ SEQUENCE 86 AA; 10039 MW; BC997018AA5994F2 CRC64; MQDELFETEK IPPKNTKNTK NAPKKSFEEH VHSLERAIDR LNDPNLSLKD GMDLYKTAMQ ELFLAQKLLE NAYLEHEKLQ TPDQKA // ID EXDL1_HELPY Reviewed; 133 AA. AC O25754; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=Putative biopolymer transport protein ExbD-like 1; GN OrderedLocusNames=HP_1129; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Single- CC pass type II membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ExbD/TolR family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08171.1; -; Genomic_DNA. DR PIR; A64661; A64661. DR RefSeq; NP_207920.1; NC_000915.1. DR RefSeq; WP_001105106.1; NC_018939.1. DR ProteinModelPortal; O25754; -. DR DIP; DIP-3550N; -. DR IntAct; O25754; 5. DR MINT; MINT-164494; -. DR STRING; 85962.HP1129; -. DR PaxDb; O25754; -. DR PRIDE; O25754; -. DR EnsemblBacteria; AAD08171; AAD08171; HP_1129. DR GeneID; 899666; -. DR KEGG; heo:C694_05825; -. DR KEGG; hpy:HP1129; -. DR PATRIC; 20593603; VBIHelPyl33062_1181. DR eggNOG; ENOG4105M8F; Bacteria. DR eggNOG; COG0848; LUCA. DR KO; K03559; -. DR OMA; GAMADIN; -. DR OrthoDB; EOG6TJ80C; -. DR BioCyc; HPY:HP1129-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR InterPro; IPR003400; ExbD. DR Pfam; PF02472; ExbD; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 133 Putative biopolymer transport protein FT ExbD-like 1. FT /FTId=PRO_0000129136. FT TOPO_DOM 1 15 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 16 32 Helical. {ECO:0000255}. FT TOPO_DOM 33 133 Periplasmic. {ECO:0000255}. SQ SEQUENCE 133 AA; 15414 MW; 6F9E660E1F163621 CRC64; MNYDNYWDED KPELNITPLV DVMLVLLAIL MVTTPTLTYK EEIALPSGSK TARATQDKMI EIRMDKDAKI YIDSQTYEYN SFPDTFNLLS KKYDKDTRVS IRADKRLTYD KVIYLLKTIK EAGFLKVSLI TSP // ID EX7L_HELPY Reviewed; 420 AA. AC O25039; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Exodeoxyribonuclease 7 large subunit {ECO:0000255|HAMAP-Rule:MF_00378}; DE EC=3.1.11.6 {ECO:0000255|HAMAP-Rule:MF_00378}; DE AltName: Full=Exodeoxyribonuclease VII large subunit {ECO:0000255|HAMAP-Rule:MF_00378}; DE Short=Exonuclease VII large subunit {ECO:0000255|HAMAP-Rule:MF_00378}; GN Name=xseA {ECO:0000255|HAMAP-Rule:MF_00378}; GN OrderedLocusNames=HP_0259; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Bidirectionally degrades single-stranded DNA into large CC acid-insoluble oligonucleotides, which are then degraded further CC into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP- CC Rule:MF_00378}. CC -!- CATALYTIC ACTIVITY: Exonucleolytic cleavage in either 5'- to 3'- CC or 3'- to 5'-direction to yield nucleoside 5'-phosphates. CC {ECO:0000255|HAMAP-Rule:MF_00378}. CC -!- SUBUNIT: Heterooligomer composed of large and small subunits. CC {ECO:0000255|HAMAP-Rule:MF_00378}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00378}. CC -!- SIMILARITY: Belongs to the XseA family. {ECO:0000255|HAMAP- CC Rule:MF_00378}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07327.1; -; Genomic_DNA. DR PIR; C64552; C64552. DR RefSeq; NP_207057.1; NC_000915.1. DR RefSeq; WP_000382848.1; NC_018939.1. DR ProteinModelPortal; O25039; -. DR DIP; DIP-3158N; -. DR IntAct; O25039; 2. DR MINT; MINT-183528; -. DR STRING; 85962.HP0259; -. DR PaxDb; O25039; -. DR PRIDE; O25039; -. DR EnsemblBacteria; AAD07327; AAD07327; HP_0259. DR GeneID; 900178; -. DR KEGG; heo:C694_01310; -. DR KEGG; hpy:HP0259; -. DR PATRIC; 20591745; VBIHelPyl33062_0270. DR eggNOG; ENOG4105DVS; Bacteria. DR eggNOG; COG1570; LUCA. DR KO; K03601; -. DR OMA; CINALMQ; -. DR OrthoDB; EOG64R65J; -. DR BioCyc; HPY:HP0259-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro. DR GO; GO:0008855; F:exodeoxyribonuclease VII activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006308; P:DNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00378; Exonuc_7_L; 1. DR InterPro; IPR003753; Exonuc_VII_L. DR InterPro; IPR020579; Exonuc_VII_lsu_C. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR025824; OB-fold_nuc-bd_dom. DR Pfam; PF02601; Exonuc_VII_L; 1. DR Pfam; PF13742; tRNA_anti_2; 1. DR TIGRFAMs; TIGR00237; xseA; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Exonuclease; Hydrolase; Nuclease; KW Reference proteome. FT CHAIN 1 420 Exodeoxyribonuclease 7 large subunit. FT /FTId=PRO_0000197850. SQ SEQUENCE 420 AA; 47170 MW; D704819640F480EA CRC64; MDVLSVSEIN AQIKALLEAT FLQVRVQGEV SNLTIHKVSG HAYFSLKDSQ SVIKCVLFKG NANRLKFALK EGQEVVVFGG ISVYVPRGDY QINCFEIEPK DIGSLTLALE QLKEKLRLKG YFDEENKLPK PHFPKRVAVI TSQNSAAWAD MKKIASKRWP MCELVCINTL MQGEGCVQSV VESIVYADSF HDTKNAFDAI VVARGGGSME DLYSFNDEKI ADALYLAKTF SMSAIGHESD FLLSDLVADL RASTPSNAME ILLPSSDEWL QRLDGFNVKL HRSFKTLLHQ KKAHLEHLVA SLKRLSFENK HHLNALKLEK LKIALENKTL EFLRFKKTLL EKISTQTLTS PFLQTKTERL NRLENALKLA HANLKLPQFG ALVSKNNQAI ELEALKRGDK IELSNEKTRA SAEILSVDRV // ID EXBB_HELPY Reviewed; 145 AA. AC O25897; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 13-APR-2016, entry version 84. DE RecName: Full=Biopolymer transport protein ExbB; GN Name=exbB; OrderedLocusNames=HP_1339; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the TonB-dependent energy-dependent CC transport of various receptor-bound substrates. Protects ExbD from CC proteolytic degradation and functionally stabilizes TonB (By CC similarity). {ECO:0000250}. CC -!- SUBUNIT: The accessory proteins ExbB and ExbD seem to form a CC complex with TonB. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane CC protein. CC -!- SIMILARITY: Belongs to the ExbB/TolQ family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08381.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08381.1; ALT_INIT; Genomic_DNA. DR PIR; C64687; C64687. DR RefSeq; NP_208131.1; NC_000915.1. DR RefSeq; WP_000116540.1; NC_000915.1. DR RefSeq; WP_001862479.1; NC_018939.1. DR STRING; 85962.HP1339; -. DR PaxDb; O25897; -. DR EnsemblBacteria; AAD08381; AAD08381; HP_1339. DR GeneID; 898784; -. DR KEGG; heo:C694_06910; -. DR KEGG; hpy:HP1339; -. DR PATRIC; 20594061; VBIHelPyl33062_1401. DR eggNOG; ENOG4105M8K; Bacteria. DR eggNOG; COG0811; LUCA. DR KO; K03561; -. DR OMA; ERIIFYS; -. DR OrthoDB; EOG6JDWB5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR InterPro; IPR002898; MotA_ExbB_proton_chnl. DR InterPro; IPR014172; TonB_ExbB_2. DR Pfam; PF01618; MotA_ExbB; 1. DR TIGRFAMs; TIGR02805; exbB2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 145 Biopolymer transport protein ExbB. FT /FTId=PRO_0000145803. FT TRANSMEM 13 33 Helical. {ECO:0000255}. FT TRANSMEM 67 87 Helical. {ECO:0000255}. FT TRANSMEM 101 121 Helical. {ECO:0000255}. SQ SEQUENCE 145 AA; 15804 MW; A44BB5BA436F9540 CRC64; MGGFSVGMLK DYVDIFVFAV LGVASFLALW FAIERVIFYS KVDLKAYDDI DALNLDLTKN LTILYVIFSN APYVGLLGTV LGIMVIFYDM GVSGGMDAKT IMVGLSLALK ATALGLAVAI PTLIAYNSLL RKSDVLSEKF RIMKK // ID EXBD_HELPY Reviewed; 129 AA. AC O25898; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Biopolymer transport protein ExbD; GN Name=exbD; OrderedLocusNames=HP_1340; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the TonB-dependent energy-dependent CC transport of various receptor-bound substrates. {ECO:0000250}. CC -!- SUBUNIT: The accessory proteins ExbB and ExbD seem to form a CC complex with TonB. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Single- CC pass type II membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ExbD/TolR family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08382.1; -; Genomic_DNA. DR PIR; D64687; D64687. DR RefSeq; NP_208132.1; NC_000915.1. DR RefSeq; WP_000836350.1; NC_018939.1. DR ProteinModelPortal; O25898; -. DR DIP; DIP-3143N; -. DR IntAct; O25898; 1. DR MINT; MINT-175819; -. DR STRING; 85962.HP1340; -. DR PaxDb; O25898; -. DR PRIDE; O25898; -. DR EnsemblBacteria; AAD08382; AAD08382; HP_1340. DR GeneID; 898892; -. DR KEGG; heo:C694_06915; -. DR KEGG; hpy:HP1340; -. DR PATRIC; 20594063; VBIHelPyl33062_1402. DR eggNOG; ENOG4105M15; Bacteria. DR eggNOG; COG0848; LUCA. DR KO; K03559; -. DR OMA; HENFTIA; -. DR OrthoDB; EOG6P5ZH2; -. DR BioCyc; HPY:HP1340-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR InterPro; IPR003400; ExbD. DR InterPro; IPR014171; TonB_ExbD_2. DR Pfam; PF02472; ExbD; 1. DR TIGRFAMs; TIGR02804; ExbD_2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 129 Biopolymer transport protein ExbD. FT /FTId=PRO_0000129122. FT TOPO_DOM 1 12 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 13 33 Helical. {ECO:0000255}. FT TOPO_DOM 34 129 Periplasmic. {ECO:0000255}. SQ SEQUENCE 129 AA; 14377 MW; D575395C4DDF28E9 CRC64; MKSIRRGDGL NVVPFIDIML VLLAIVLSIS TFIAQGKIKV SLPNAKNAEK SQPNDQKVVV ISVDEHDNIF VDDKPMNLEA LSAVVKQTDP KTLIDLKSDK SSRFETFISI MDILKEHNHE NFSISTQAQ // ID EXBL1_HELPY Reviewed; 189 AA. AC O25755; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Putative biopolymer transport protein ExbB-like 1; GN OrderedLocusNames=HP_1130; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ExbB/TolQ family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08172.1; -; Genomic_DNA. DR PIR; B64661; B64661. DR RefSeq; NP_207921.1; NC_000915.1. DR RefSeq; WP_000887310.1; NC_018939.1. DR ProteinModelPortal; O25755; -. DR DIP; DIP-3418N; -. DR IntAct; O25755; 1. DR MINT; MINT-172647; -. DR STRING; 85962.HP1130; -. DR PaxDb; O25755; -. DR PRIDE; O25755; -. DR EnsemblBacteria; AAD08172; AAD08172; HP_1130. DR GeneID; 899667; -. DR KEGG; heo:C694_05830; -. DR KEGG; hpy:HP1130; -. DR PATRIC; 20593605; VBIHelPyl33062_1182. DR eggNOG; ENOG4105E02; Bacteria. DR eggNOG; COG0811; LUCA. DR OMA; IPAYSFH; -. DR OrthoDB; EOG6091FR; -. DR BioCyc; HPY:HP1130-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR InterPro; IPR017269; Biopolymer_transpt_ExbB-like_1. DR InterPro; IPR002898; MotA_ExbB_proton_chnl. DR Pfam; PF01618; MotA_ExbB; 1. DR PIRSF; PIRSF037713; Biopolymer_transpt_exbB-like; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 189 Putative biopolymer transport protein FT ExbB-like 1. FT /FTId=PRO_0000145815. FT TRANSMEM 14 34 Helical. {ECO:0000255}. FT TRANSMEM 99 119 Helical. {ECO:0000255}. FT TRANSMEM 147 167 Helical. {ECO:0000255}. SQ SEQUENCE 189 AA; 21179 MW; 6B939D9978CA0AB3 CRC64; MLDSIVYFFN KSGFVTTLVL VWISLYLVMT LWVFLYKSIA LKIELKREMQ SLSNILNGAQ DAPEHFMFNK KRNDETKRYS NELLQAWKHQ VLKQSTTGLV VLSIISSTAP FIGLFGTVVE ILEAFNNLGT LGQASFGVIA PIISKALIAT AAGILAAIPA YSFYLILKRK VYDLSVYVQM QVDILSSKK // ID F16PA_HELPY Reviewed; 290 AA. AC O25936; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 102. DE RecName: Full=Fructose-1,6-bisphosphatase class 1 {ECO:0000255|HAMAP-Rule:MF_01855}; DE Short=FBPase class 1 {ECO:0000255|HAMAP-Rule:MF_01855}; DE EC=3.1.3.11 {ECO:0000255|HAMAP-Rule:MF_01855}; DE AltName: Full=D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000255|HAMAP-Rule:MF_01855}; GN Name=fbp {ECO:0000255|HAMAP-Rule:MF_01855}; OrderedLocusNames=HP_1385; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: D-fructose 1,6-bisphosphate + H(2)O = D- CC fructose 6-phosphate + phosphate. {ECO:0000255|HAMAP- CC Rule:MF_01855}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01855}; CC Note=Binds 2 magnesium ions per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01855}; CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC {ECO:0000255|HAMAP-Rule:MF_01855}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01855}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01855}. CC -!- SIMILARITY: Belongs to the FBPase class 1 family. CC {ECO:0000255|HAMAP-Rule:MF_01855}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08424.1; -; Genomic_DNA. DR PIR; A64693; A64693. DR RefSeq; NP_208176.1; NC_000915.1. DR RefSeq; WP_000384644.1; NC_018939.1. DR ProteinModelPortal; O25936; -. DR STRING; 85962.HP1385; -. DR PaxDb; O25936; -. DR PRIDE; O25936; -. DR EnsemblBacteria; AAD08424; AAD08424; HP_1385. DR GeneID; 900294; -. DR KEGG; heo:C694_07150; -. DR KEGG; hpy:HP1385; -. DR PATRIC; 20594159; VBIHelPyl33062_1450. DR eggNOG; ENOG4105CZI; Bacteria. DR eggNOG; COG0158; LUCA. DR KO; K03841; -. DR OMA; HEKSECY; -. DR OrthoDB; EOG6X10TR; -. DR BioCyc; HPY:HP1385-MONOMER; -. DR UniPathway; UPA00138; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0042132; F:fructose 1,6-bisphosphate 1-phosphatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-UniPathway. DR HAMAP; MF_01855; FBPase_class1; 1. DR InterPro; IPR000146; FBPase_class-1. DR InterPro; IPR033391; FBPase_N. DR InterPro; IPR028343; FBPtase. DR InterPro; IPR023079; SBPase. DR PANTHER; PTHR11556; PTHR11556; 1. DR Pfam; PF00316; FBPase; 1. DR PIRSF; PIRSF500210; FBPtase; 1. DR PIRSF; PIRSF000904; FBPtase_SBPase; 1. DR PRINTS; PR01958; S17BPHPHTASE. PE 3: Inferred from homology; KW Carbohydrate metabolism; Complete proteome; Cytoplasm; Hydrolase; KW Magnesium; Metal-binding; Reference proteome. FT CHAIN 1 290 Fructose-1,6-bisphosphatase class 1. FT /FTId=PRO_0000200495. FT REGION 99 102 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT METAL 78 78 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT METAL 96 96 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT METAL 96 96 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT METAL 98 98 Magnesium 1; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01855}. FT METAL 99 99 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT METAL 232 232 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT BINDING 201 201 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01855}. FT BINDING 226 226 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01855}. SQ SEQUENCE 290 AA; 32949 MW; B2E05ACA546634D1 CRC64; MDYKCFKGKH ANIVIEIISL LEKGVKKAQE ILEKPDAGSY TKLENSSGDT PIKADLALDK FLEENFLSLE NIKSVFSEEK ETPVTKENGS YLIAYDPLDG SSVMEANFLV GTIIGIYEKD YKAQNLAASL YVVFGHKIEL VVALEEVYRY SFYQNKFHFI ETIVLENKGK IVASGGNQKD FSLGLKKALE GFFAENYRLR YSGSMVADVH HVLVKKGGMF SYPQKKLRKL FEVFPLALMV EKAKGEAFYF DKGVKKRLLE QSVENYHEKS ECYLASQHEA HILEKYLKGE // ID FABZ_HELPY Reviewed; 159 AA. AC O25928; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 96. DE RecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000255|HAMAP-Rule:MF_00406}; DE EC=4.2.1.59 {ECO:0000255|HAMAP-Rule:MF_00406}; DE AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000255|HAMAP-Rule:MF_00406}; DE Short=(3R)-hydroxymyristoyl-ACP dehydrase {ECO:0000255|HAMAP-Rule:MF_00406}; DE AltName: Full=Beta-hydroxyacyl-ACP dehydratase {ECO:0000255|HAMAP-Rule:MF_00406}; GN Name=fabZ {ECO:0000255|HAMAP-Rule:MF_00406}; GN OrderedLocusNames=HP_1376; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in unsaturated fatty acids biosynthesis. CC Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and CC long chain saturated and unsaturated beta-hydroxyacyl-ACPs. CC {ECO:0000255|HAMAP-Rule:MF_00406}. CC -!- CATALYTIC ACTIVITY: A (3R)-3-hydroxyacyl-[acyl-carrier protein] = CC a trans-2-enoyl-[acyl-carrier protein] + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_00406}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00406}. CC -!- SIMILARITY: Belongs to the thioester dehydratase family. FabZ CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00406}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08419.1; -; Genomic_DNA. DR PIR; H64691; H64691. DR RefSeq; NP_208167.1; NC_000915.1. DR RefSeq; WP_000438056.1; NC_018939.1. DR PDB; 2GLL; X-ray; 2.20 A; A/B/C/D/E/F=1-158. DR PDB; 2GLM; X-ray; 2.60 A; A/B/C/D/E/F=1-158. DR PDB; 2GLP; X-ray; 2.42 A; A/B/C/D/E/F=1-158. DR PDB; 2GLV; X-ray; 2.50 A; A/B/C/D/E/F/G/H/I/J/K/L=1-158. DR PDBsum; 2GLL; -. DR PDBsum; 2GLM; -. DR PDBsum; 2GLP; -. DR PDBsum; 2GLV; -. DR ProteinModelPortal; O25928; -. DR SMR; O25928; 8-159. DR IntAct; O25928; 1. DR STRING; 85962.HP1376; -. DR BindingDB; O25928; -. DR PaxDb; O25928; -. DR PRIDE; O25928; -. DR EnsemblBacteria; AAD08419; AAD08419; HP_1376. DR GeneID; 900307; -. DR KEGG; heo:C694_07100; -. DR KEGG; hpy:HP1376; -. DR PATRIC; 20594141; VBIHelPyl33062_1441. DR eggNOG; ENOG4108YXN; Bacteria. DR eggNOG; COG0764; LUCA. DR KO; K02372; -. DR OMA; PTENELY; -. DR OrthoDB; EOG6JTCGM; -. DR BioCyc; HPY:HP1376-MONOMER; -. DR EvolutionaryTrace; O25928; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0047451; F:3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.129.10; -; 1. DR HAMAP; MF_00406; FabZ; 1. DR InterPro; IPR013114; FabA_FabZ. DR InterPro; IPR010084; FabZ. DR InterPro; IPR029069; HotDog_dom. DR Pfam; PF07977; FabA; 1. DR SUPFAM; SSF54637; SSF54637; 1. DR TIGRFAMs; TIGR01750; fabZ; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Lyase; Reference proteome. FT CHAIN 1 159 3-hydroxyacyl-[acyl-carrier-protein] FT dehydratase FabZ. FT /FTId=PRO_0000091688. FT ACT_SITE 58 58 {ECO:0000255|HAMAP-Rule:MF_00406}. FT HELIX 14 20 {ECO:0000244|PDB:2GLL}. FT STRAND 32 37 {ECO:0000244|PDB:2GLL}. FT TURN 38 40 {ECO:0000244|PDB:2GLL}. FT STRAND 41 47 {ECO:0000244|PDB:2GLL}. FT HELIX 54 57 {ECO:0000244|PDB:2GLL}. FT HELIX 67 87 {ECO:0000244|PDB:2GLL}. FT HELIX 91 94 {ECO:0000244|PDB:2GLL}. FT STRAND 97 109 {ECO:0000244|PDB:2GLL}. FT STRAND 118 141 {ECO:0000244|PDB:2GLL}. FT STRAND 144 157 {ECO:0000244|PDB:2GLL}. SQ SEQUENCE 159 AA; 18196 MW; 715B6FBED872AE32 CRC64; MEQSHQNLQS QFFIEHILQI LPHRYPMLLV DRIIELQANK KIVAYKNITF NEDVFNGHFP NKPIFPGVLI VEGMAQTGGF LAFTSLWGFD PEIAKTKIVY FMTIDKVKFR IPVTPGDRLE YHLEVLKHKG MIWQVGGTAQ VDGKVVAEAE LKAMIAERD // ID FABI_HELPY Reviewed; 275 AA. AC O24990; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 116. DE RecName: Full=Enoyl-[acyl-carrier-protein] reductase [NADH] FabI; DE Short=ENR; DE EC=1.3.1.9; DE AltName: Full=NADH-dependent enoyl-ACP reductase; GN Name=fabI; OrderedLocusNames=HP_0195; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) IN COMPLEX WITH NAD AND RP INHIBITORS, AND SUBUNIT. RX PubMed=17879346; DOI=10.1002/prot.21586; RA Lee H.H., Moon J., Suh S.W.; RT "Crystal structure of the Helicobacter pylori enoyl-acyl carrier RT protein reductase in complex with hydroxydiphenyl ether compounds, RT triclosan and diclosan."; RL Proteins 69:691-694(2007). CC -!- FUNCTION: Catalyzes the reduction of a carbon-carbon double bond CC in an enoyl moiety that is covalently linked to an acyl carrier CC protein (ACP). Involved in the elongation cycle of fatty acid CC which are used in the lipid metabolism (By similarity). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: An acyl-[acyl-carrier protein] + NAD(+) = a CC trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH. CC -!- PATHWAY: Lipid metabolism; fatty acid biosynthesis. CC -!- SUBUNIT: Homotetramer. {ECO:0000269|PubMed:17879346}. CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. FabI subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07262.1; -; Genomic_DNA. DR PIR; C64544; C64544. DR RefSeq; NP_206994.1; NC_000915.1. DR RefSeq; WP_000506216.1; NC_018939.1. DR PDB; 2PD3; X-ray; 2.50 A; A/B/C/D=1-275. DR PDB; 2PD4; X-ray; 2.30 A; A/B/C/D=1-275. DR PDBsum; 2PD3; -. DR PDBsum; 2PD4; -. DR ProteinModelPortal; O24990; -. DR SMR; O24990; 2-275. DR IntAct; O24990; 1. DR STRING; 85962.HP0195; -. DR DrugBank; DB08604; Triclosan. DR PaxDb; O24990; -. DR PRIDE; O24990; -. DR EnsemblBacteria; AAD07262; AAD07262; HP_0195. DR GeneID; 899156; -. DR KEGG; heo:C694_00970; -. DR KEGG; hpy:HP0195; -. DR PATRIC; 20591611; VBIHelPyl33062_0205. DR eggNOG; ENOG4105CSJ; Bacteria. DR eggNOG; COG0623; LUCA. DR KO; K00208; -. DR OMA; GILDMIH; -. DR OrthoDB; EOG6HF644; -. DR BioCyc; HPY:HP0195-MONOMER; -. DR BRENDA; 1.3.1.9; 2604. DR UniPathway; UPA00094; -. DR EvolutionaryTrace; O24990; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004318; F:enoyl-[acyl-carrier-protein] reductase (NADH) activity; ISS:UniProtKB. DR GO; GO:0030497; P:fatty acid elongation; ISS:UniProtKB. DR GO; GO:0051289; P:protein homotetramerization; ISS:UniProtKB. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR014358; Enoyl-ACP_Rdtase_NADH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 2. DR PANTHER; PTHR24322:SF317; PTHR24322:SF317; 2. DR PIRSF; PIRSF000094; Enoyl-ACP_rdct; 1. DR PRINTS; PR00081; GDHRDH. DR SUPFAM; SSF51735; SSF51735; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Fatty acid biosynthesis; KW Fatty acid metabolism; Lipid biosynthesis; Lipid metabolism; NAD; KW Oxidoreductase; Reference proteome. FT CHAIN 1 275 Enoyl-[acyl-carrier-protein] reductase FT [NADH] FabI. FT /FTId=PRO_0000054902. FT NP_BIND 19 20 NAD. {ECO:0000269|PubMed:17879346}. FT NP_BIND 64 65 NAD. {ECO:0000269|PubMed:17879346}. FT NP_BIND 191 195 NAD. {ECO:0000269|PubMed:17879346}. FT ACT_SITE 145 145 Proton acceptor. {ECO:0000250}. FT ACT_SITE 155 155 Proton acceptor. FT BINDING 13 13 NAD; via carbonyl oxygen. FT {ECO:0000269|PubMed:17879346}. FT BINDING 92 92 NAD; via carbonyl oxygen. FT {ECO:0000269|PubMed:17879346}. FT BINDING 95 95 Substrate; via amide nitrogen and FT carbonyl oxygen. FT BINDING 162 162 NAD. {ECO:0000269|PubMed:17879346}. FT SITE 203 203 Involved in acyl-ACP binding. FT {ECO:0000250}. FT TURN 3 6 {ECO:0000244|PDB:2PD4}. FT STRAND 8 12 {ECO:0000244|PDB:2PD4}. FT HELIX 20 29 {ECO:0000244|PDB:2PD4}. FT TURN 30 32 {ECO:0000244|PDB:2PD4}. FT STRAND 34 41 {ECO:0000244|PDB:2PD4}. FT TURN 42 44 {ECO:0000244|PDB:2PD4}. FT HELIX 45 54 {ECO:0000244|PDB:2PD4}. FT STRAND 60 62 {ECO:0000244|PDB:2PD4}. FT HELIX 68 81 {ECO:0000244|PDB:2PD4}. FT STRAND 85 90 {ECO:0000244|PDB:2PD4}. FT HELIX 97 100 {ECO:0000244|PDB:2PD4}. FT HELIX 104 106 {ECO:0000244|PDB:2PD4}. FT HELIX 109 119 {ECO:0000244|PDB:2PD4}. FT HELIX 121 130 {ECO:0000244|PDB:2PD4}. FT HELIX 131 133 {ECO:0000244|PDB:2PD4}. FT STRAND 134 144 {ECO:0000244|PDB:2PD4}. FT HELIX 146 148 {ECO:0000244|PDB:2PD4}. FT HELIX 156 177 {ECO:0000244|PDB:2PD4}. FT TURN 178 180 {ECO:0000244|PDB:2PD4}. FT STRAND 182 188 {ECO:0000244|PDB:2PD4}. FT HELIX 196 198 {ECO:0000244|PDB:2PD4}. FT HELIX 202 212 {ECO:0000244|PDB:2PD4}. FT HELIX 221 232 {ECO:0000244|PDB:2PD4}. FT HELIX 234 236 {ECO:0000244|PDB:2PD4}. FT STRAND 243 247 {ECO:0000244|PDB:2PD4}. FT HELIX 250 252 {ECO:0000244|PDB:2PD4}. FT STRAND 253 255 {ECO:0000244|PDB:2PD4}. FT TURN 262 265 {ECO:0000244|PDB:2PD4}. FT HELIX 268 271 {ECO:0000244|PDB:2PD4}. SQ SEQUENCE 275 AA; 29981 MW; 1894A5AA2105895A CRC64; MGFLKGKKGL IVGVANNKSI AYGIAQSCFN QGATLAFTYL NESLEKRVRP IAQELNSPYV YELDVSKEEH FKSLYNSVKK DLGSLDFIVH SVAFAPKEAL EGSLLETSKS AFNTAMEISV YSLIELTNTL KPLLNNGASV LTLSYLGSTK YMAHYNVMGL AKAALESAVR YLAVDLGKHH IRVNALSAGP IRTLASSGIA DFRMILKWNE INAPLRKNVS LEEVGNAGMY LLSSLSSGVS GEVHFVDAGY HVMGMGAVEE KDNKATLLWD LHKEQ // ID EXDL2_HELPY Reviewed; 133 AA. AC P64101; O25987; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 63. DE RecName: Full=Putative biopolymer transport protein ExbD-like 2; GN OrderedLocusNames=HP_1446; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Single- CC pass type II membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ExbD/TolR family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08484.1; -; Genomic_DNA. DR PIR; F64700; F64700. DR RefSeq; NP_208237.1; NC_000915.1. DR RefSeq; WP_000755082.1; NC_018939.1. DR ProteinModelPortal; P64101; -. DR IntAct; P64101; 1. DR MINT; MINT-4077486; -. DR STRING; 85962.HP1446; -. DR PaxDb; P64101; -. DR PRIDE; P64101; -. DR EnsemblBacteria; AAD08484; AAD08484; HP_1446. DR GeneID; 899848; -. DR KEGG; heo:C694_07490; -. DR KEGG; hpy:HP1446; -. DR PATRIC; 20594299; VBIHelPyl33062_1518. DR eggNOG; ENOG4105M15; Bacteria. DR eggNOG; COG0848; LUCA. DR KO; K03559; -. DR OMA; LPINIPK; -. DR OrthoDB; EOG6P5ZH2; -. DR BioCyc; HPY:HP1446-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR InterPro; IPR003400; ExbD. DR Pfam; PF02472; ExbD; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 133 Putative biopolymer transport protein FT ExbD-like 2. FT /FTId=PRO_0000129138. FT TOPO_DOM 1 9 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 10 30 Helical. {ECO:0000255}. FT TOPO_DOM 31 133 Periplasmic. {ECO:0000255}. SQ SEQUENCE 133 AA; 15042 MW; 3406579AF1583A89 CRC64; MKKVESMNVV PFIDIMLVLL VIVLTTASFV QTSKLPISIP QVDKDSTDSK DVLDKKQVTI AISNKGSFYF DDKEISFENL KHKVSTLAKD TPIVLQGDKK SNLDNFIKVV DLLQTNNLKQ LYILVEDKKN QKN // ID FEOB_HELPY Reviewed; 642 AA. AC O25396; DT 27-SEP-2005, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Ferrous iron transport protein B; GN Name=feoB; OrderedLocusNames=HP_0687; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=10931324; DOI=10.1046/j.1365-2958.2000.01987.x; RA Velayudhan J., Hughes N.J., McColm A.A., Bagshaw J., Clayton C.L., RA Andrews S.C., Kelly D.J.; RT "Iron acquisition and virulence in Helicobacter pylori: a major role RT for FeoB, a high-affinity ferrous iron transporter."; RL Mol. Microbiol. 37:274-286(2000). CC -!- FUNCTION: ATP-driven Fe(2+) uptake system. CC {ECO:0000269|PubMed:10931324}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- DISRUPTION PHENOTYPE: Cells are unable to colonize the gastric CC mucosa of mice. {ECO:0000269|PubMed:10931324}. CC -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- CC like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. CC {ECO:0000255|PROSITE-ProRule:PRU01048}. CC -!- SIMILARITY: Contains 1 FeoB-type G (guanine nucleotide-binding) CC domain. {ECO:0000255|PROSITE-ProRule:PRU01048}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07741.1; -; Genomic_DNA. DR PIR; G64605; G64605. DR RefSeq; NP_207481.1; NC_000915.1. DR RefSeq; WP_000659176.1; NC_018939.1. DR ProteinModelPortal; O25396; -. DR DIP; DIP-3079N; -. DR IntAct; O25396; 19. DR MINT; MINT-161005; -. DR STRING; 85962.HP0687; -. DR TCDB; 9.A.8.1.2; the ferrous iron uptake (feob) family. DR PaxDb; O25396; -. DR PRIDE; O25396; -. DR EnsemblBacteria; AAD07741; AAD07741; HP_0687. DR GeneID; 898903; -. DR KEGG; heo:C694_03545; -. DR KEGG; hpy:HP0687; -. DR PATRIC; 20592659; VBIHelPyl33062_0718. DR eggNOG; ENOG4105CE1; Bacteria. DR eggNOG; COG0370; LUCA. DR KO; K04759; -. DR OMA; FVLLYMP; -. DR OrthoDB; EOG6JQH16; -. DR BioCyc; HPY:HP0687-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0015093; F:ferrous iron transmembrane transporter activity; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0055072; P:iron ion homeostasis; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003373; Fe2_transport_prot-B. DR InterPro; IPR011640; Fe2_transport_prot_B_C. DR InterPro; IPR011619; Fe2_transport_prot_B_N. DR InterPro; IPR030389; G_FEOB_dom. DR InterPro; IPR011642; Gate_dom. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11649:SF37; PTHR11649:SF37; 3. DR Pfam; PF07664; FeoB_C; 1. DR Pfam; PF02421; FeoB_N; 1. DR Pfam; PF07670; Gate; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00437; feoB; 1. DR PROSITE; PS51711; G_FEOB; 1. PE 3: Inferred from homology; KW ATP-binding; Cell inner membrane; Cell membrane; Complete proteome; KW Ion transport; Iron; Iron transport; Membrane; Nucleotide-binding; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 642 Ferrous iron transport protein B. FT /FTId=PRO_0000210830. FT TRANSMEM 226 246 Helical. {ECO:0000255}. FT TRANSMEM 279 299 Helical. {ECO:0000255}. FT TRANSMEM 361 381 Helical. {ECO:0000255}. FT TRANSMEM 388 408 Helical. {ECO:0000255}. FT TRANSMEM 447 467 Helical. {ECO:0000255}. FT TRANSMEM 541 561 Helical. {ECO:0000255}. FT TRANSMEM 586 606 Helical. {ECO:0000255}. FT TRANSMEM 615 635 Helical. {ECO:0000255}. FT DOMAIN 3 168 FeoB-type G. {ECO:0000255|PROSITE- FT ProRule:PRU01048}. FT NP_BIND 10 17 ATP. {ECO:0000255}. SQ SEQUENCE 642 AA; 71423 MW; D6784C7153E8A3BC CRC64; MKEITIALVG QPNVGKSSLI NALSNAHLKV GNFAGVTVDK MEVGLIHKEH QITIIDLPGT YALNDFTTEE KVTKDFLEKG QYDLILNVVD STNLERNLAL SAQLLDTNKK MLLALNMWDE AQKEGIKINT EKLSKELGVV CVPTSARSKE DRLNTELLLD EIVRLYSQNT TNNENIKVPS QSFKESLKYS QSAQRIAQLV ISENQQNASF EHTYKIDKIL MHKRYGIFIF LGFMFIIFSL SFLIGGGVQK ALETGFKFLS DGIKENVANE DLASLVGDGI IGGVGATVSF LPLIVVLYFG ISLLETTGYM SRVAFLLDGI LHKFGLHGKS FIPLITGFGC SVPAYMATRT LQNYNERLIT LFVIGFMSCS ARLPIYVLFV GSFFPSSSAG FVLFCIYILG AVVALVMAKL LKLSVFKGQT ESFIMEMPKY RFPSWRMVYF SIYTKSLSYL KKAGTYILVG AILIWFMSQY PKSDAAMKAY KQESLLVNKD TTLSSEAKEE KLKELKTELD KKNLKNSIVG RGGAYLEKVF SPMDFDWRLS VSLVTGFMAK EVVVSTLGVL FSLGDQNEKS DAFRGILRKE VSVPSGIAFI VFVMFYIPCF AATITFGREA GGIKFVAYLF IFTTVVAYAF SLIAFYATQI LV // ID FLAV_HELPY Reviewed; 164 AA. AC O25776; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 104. DE RecName: Full=Flavodoxin; GN Name=fldA; OrderedLocusNames=HP_1161; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Low-potential electron donor to a number of redox CC enzymes. {ECO:0000250}. CC -!- COFACTOR: CC Name=FMN; Xref=ChEBI:CHEBI:58210; Evidence={ECO:0000250}; CC -!- SIMILARITY: Belongs to the flavodoxin family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 flavodoxin-like domain. CC {ECO:0000255|PROSITE-ProRule:PRU00088}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08207.1; -; Genomic_DNA. DR PIR; A64665; A64665. DR RefSeq; NP_207952.1; NC_000915.1. DR RefSeq; WP_000516078.1; NC_018939.1. DR PDB; 2BMV; X-ray; 2.11 A; A=1-164. DR PDB; 2W5U; X-ray; 2.62 A; A/B=1-164. DR PDBsum; 2BMV; -. DR PDBsum; 2W5U; -. DR ProteinModelPortal; O25776; -. DR SMR; O25776; 2-164. DR IntAct; O25776; 1. DR STRING; 85962.HP1161; -. DR PaxDb; O25776; -. DR PRIDE; O25776; -. DR EnsemblBacteria; AAD08207; AAD08207; HP_1161. DR GeneID; 899921; -. DR KEGG; heo:C694_05995; -. DR KEGG; hpy:HP1161; -. DR PATRIC; 20593673; VBIHelPyl33062_1215. DR eggNOG; ENOG4105MHQ; Bacteria. DR eggNOG; COG0716; LUCA. DR KO; K03839; -. DR OMA; ASKGMAD; -. DR OrthoDB; EOG6C5RTW; -. DR BioCyc; HPY:HP1161-MONOMER; -. DR EvolutionaryTrace; O25776; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0055114; P:oxidation-reduction process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR008254; Flavodoxin/NO_synth. DR InterPro; IPR010086; Flavodoxin_lc. DR InterPro; IPR029039; Flavoprotein-like_dom. DR Pfam; PF00258; Flavodoxin_1; 1. DR PIRSF; PIRSF038996; FldA; 1. DR SUPFAM; SSF52218; SSF52218; 1. DR TIGRFAMs; TIGR01752; flav_long; 1. DR PROSITE; PS50902; FLAVODOXIN_LIKE; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Electron transport; Flavoprotein; KW FMN; Reference proteome; Transport. FT CHAIN 1 164 Flavodoxin. FT /FTId=PRO_0000171634. FT DOMAIN 4 160 Flavodoxin-like. {ECO:0000255|PROSITE- FT ProRule:PRU00088}. FT STRAND 4 8 {ECO:0000244|PDB:2BMV}. FT STRAND 11 13 {ECO:0000244|PDB:2BMV}. FT HELIX 14 26 {ECO:0000244|PDB:2BMV}. FT STRAND 28 33 {ECO:0000244|PDB:2BMV}. FT HELIX 34 36 {ECO:0000244|PDB:2BMV}. FT HELIX 39 42 {ECO:0000244|PDB:2BMV}. FT STRAND 46 55 {ECO:0000244|PDB:2BMV}. FT TURN 56 58 {ECO:0000244|PDB:2BMV}. FT HELIX 62 68 {ECO:0000244|PDB:2BMV}. FT HELIX 74 77 {ECO:0000244|PDB:2BMV}. FT STRAND 79 86 {ECO:0000244|PDB:2BMV}. FT TURN 89 91 {ECO:0000244|PDB:2BMV}. FT TURN 96 98 {ECO:0000244|PDB:2BMV}. FT HELIX 99 107 {ECO:0000244|PDB:2BMV}. FT STRAND 110 112 {ECO:0000244|PDB:2BMV}. FT STRAND 116 118 {ECO:0000244|PDB:2BMV}. FT STRAND 133 139 {ECO:0000244|PDB:2BMV}. FT TURN 141 143 {ECO:0000244|PDB:2BMV}. FT HELIX 145 147 {ECO:0000244|PDB:2BMV}. FT HELIX 148 159 {ECO:0000244|PDB:2BMV}. FT TURN 160 162 {ECO:0000244|PDB:2BMV}. SQ SEQUENCE 164 AA; 17492 MW; EBAD44D97964608C CRC64; MGKIGIFFGT DSGNAEAIAE KISKAIGNAE VVDVAKASKE QFNSFTKVIL VAPTAGAGDL QTDWEDFLGT LEASDFATKT IGLVGLGDQD TYSETFAEGI FHIYEKAKAG KVVGQTPTDG YHFEASKAVE GGKFVGLVID EDNQDDLTDE RISKWVEQVK GSFA // ID FLHB_HELPY Reviewed; 358 AA. AC P56416; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 09-DEC-2015, entry version 101. DE RecName: Full=Flagellar biosynthetic protein FlhB; GN Name=flhB; OrderedLocusNames=HP_0770; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for formation of the rod structure in the basal CC body of the flagellar apparatus. Together with FliI and FliH, may CC constitute the export apparatus of flagellin (By similarity). CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the type III secretion exporter family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07819.1; -; Genomic_DNA. DR PIR; B64616; B64616. DR RefSeq; NP_207563.1; NC_000915.1. DR RefSeq; WP_000796857.1; NC_018939.1. DR ProteinModelPortal; P56416; -. DR DIP; DIP-3472N; -. DR IntAct; P56416; 9. DR MINT; MINT-176987; -. DR STRING; 85962.HP0770; -. DR PaxDb; P56416; -. DR PRIDE; P56416; -. DR EnsemblBacteria; AAD07819; AAD07819; HP_0770. DR GeneID; 899067; -. DR KEGG; heo:C694_03955; -. DR KEGG; hpy:HP0770; -. DR PATRIC; 20592829; VBIHelPyl33062_0803. DR eggNOG; ENOG4105D00; Bacteria. DR eggNOG; COG1377; LUCA. DR KO; K02401; -. DR OMA; KMMQEIP; -. DR OrthoDB; EOG6FRD1F; -. DR BioCyc; HPY:HP0770-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR Gene3D; 3.40.1690.10; -; 1. DR InterPro; IPR006136; FlhB. DR InterPro; IPR006135; T3SS_substrate_exporter. DR InterPro; IPR029025; T3SS_substrate_exporter_C. DR PANTHER; PTHR30531; PTHR30531; 1. DR Pfam; PF01312; Bac_export_2; 1. DR PRINTS; PR00950; TYPE3IMSPROT. DR SUPFAM; SSF160544; SSF160544; 1. DR TIGRFAMs; TIGR00328; flhB; 1. PE 3: Inferred from homology; KW Bacterial flagellum biogenesis; Bacterial flagellum protein export; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 358 Flagellar biosynthetic protein FlhB. FT /FTId=PRO_0000180951. FT TRANSMEM 31 51 Helical. {ECO:0000255}. FT TRANSMEM 86 106 Helical. {ECO:0000255}. FT TRANSMEM 144 164 Helical. {ECO:0000255}. FT TRANSMEM 187 207 Helical. {ECO:0000255}. FT TRANSMEM 323 343 Helical. {ECO:0000255}. SQ SEQUENCE 358 AA; 41015 MW; 7A58F094A6723747 CRC64; MAEEEKTELP SAKKIQKARE EGNVPKSMEV VGVLGLLAGL ISIFVFFIWW VDGFSEMYRH VLKDFSLDFS KESVQELFNQ LAKDTFLLLL PILIILVVVA FLSNVLQFGW LFAPKVIEPK FSKINPINGV KNLFSLKKLL DGSLITLKVF LAFFLGFFIF SLFLGELNHA ALLNLQGQLL WFKNKALWLI SSLLFLFFVL AFIDLAIKRR QYTNSLKMTK QEVKDEYKQQ EGNPEIKAKI RQMMLKNATN KMMQEIPKAN VVVTNPTHYA VALKFDEEHP VPVVVAKGTD YLAIRIKGIA REHDIEIIEN KTLARELYRD VKLNAAIPEE LFEAVAIVFA QVAKLEQERQ KQKIIKPL // ID FLIG_HELPY Reviewed; 343 AA. AC O25119; DT 03-APR-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE RecName: Full=Flagellar motor switch protein FliG {ECO:0000250|UniProtKB:P0ABZ1, ECO:0000312|EMBL:AAD07420.1}; DE AltName: Full=Flagellar motor switch protein G {ECO:0000312|EMBL:AFV41574.1}; GN Name=fliG {ECO:0000312|EMBL:AFV41574.1}; GN OrderedLocusNames=C694_01785, HP_0352; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] {ECO:0000312|EMBL:AAD07420.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000312|EMBL:AFV41574.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000312|EMBL:AFV41574.1}; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000305} RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=SS1 {ECO:0000269|PubMed:10960117}; RX PubMed=10960117; DOI=10.1128/JB.182.18.5274-5277.2000; RA Allan E., Dorrell N., Foynes S., Anyim M., Wren B.W.; RT "Mutational analysis of genes encoding the early flagellar components RT of Helicobacter pylori: evidence for transcriptional regulation of RT flagellin A biosynthesis."; RL J. Bacteriol. 182:5274-5277(2000). RN [4] {ECO:0000305, ECO:0000312|PDB:3USW} RP X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 86-343, FUNCTION, MOTIF, AND RP MUTAGENESIS OF ARG-209; ARG-217; SER-222; GLU-243 AND GLN-325. RC STRAIN=ATCC 700392 / 26695 {ECO:0000269|PubMed:22325779}; RX PubMed=22325779; DOI=10.1016/j.str.2011.11.020; RA Lam K.H., Ip W.S., Lam Y.W., Chan S.O., Ling T.K., Au S.W.; RT "Multiple conformations of the FliG C-terminal domain provide insight RT into flagellar motor switching."; RL Structure 20:315-325(2012). CC -!- FUNCTION: One of the proteins that forms a switch complex that is CC proposed to be located at the base of the basal body. This complex CC interacts with chemotaxis proteins (such as CheY) in addition to CC contacting components of the motor that determine the direction of CC flagellar rotation. Required for flagellum synthesis and motility. CC In H.pylori four flagellar switch proteins are encoded, FliG, CC FliM, FliN and FliY. {ECO:0000250|UniProtKB:P0ABZ1, CC ECO:0000269|PubMed:10960117, ECO:0000269|PubMed:22325779, CC ECO:0000269|PubMed:9252185}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000250|UniProtKB:P0ABZ1}; Peripheral membrane protein CC {ECO:0000250|UniProtKB:P0ABZ1}; Cytoplasmic side CC {ECO:0000250|UniProtKB:P0ABZ1}. Bacterial flagellum basal body CC {ECO:0000250|UniProtKB:P0ABZ1}. CC -!- DISRUPTION PHENOTYPE: Nonflagellate. Forms dense colonies without CC swarming in contrast to the wild-type which forms diffuse colonies CC with large, swarming halos. Expression of flagellins FlaA and FlaB CC and the hook protein FlgE greatly reduced. CC {ECO:0000269|PubMed:10960117}. CC -!- SIMILARITY: Belongs to the FliG family. {ECO:0000255}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07420.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41574.1; -; Genomic_DNA. DR PIR; H64563; H64563. DR RefSeq; NP_207150.1; NC_000915.1. DR RefSeq; WP_000201853.1; NC_018939.1. DR PDB; 3USW; X-ray; 2.60 A; A=86-343. DR PDB; 3USY; X-ray; 2.71 A; A/B=116-343. DR PDB; 4FQ0; X-ray; 2.82 A; C/D=116-205. DR PDBsum; 3USW; -. DR PDBsum; 3USY; -. DR PDBsum; 4FQ0; -. DR ProteinModelPortal; O25119; -. DR DIP; DIP-3534N; -. DR IntAct; O25119; 5. DR MINT; MINT-166826; -. DR STRING; 85962.HP0352; -. DR PaxDb; O25119; -. DR PRIDE; O25119; -. DR EnsemblBacteria; AAD07420; AAD07420; HP_0352. DR EnsemblBacteria; AFV41574; AFV41574; C694_01785. DR GeneID; 899214; -. DR KEGG; heo:C694_01785; -. DR KEGG; hpy:HP0352; -. DR PATRIC; 20591937; VBIHelPyl33062_0365. DR eggNOG; ENOG4105CS3; Bacteria. DR eggNOG; COG1536; LUCA. DR KO; K02410; -. DR OMA; FIEEMAY; -. DR OrthoDB; EOG683S79; -. DR BioCyc; HPY:HP0352-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009288; C:bacterial-type flagellum; IMP:UniProtKB. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071978; P:bacterial-type flagellum-dependent swarming motility; IMP:UniProtKB. DR GO; GO:0006935; P:chemotaxis; IEA:UniProtKB-KW. DR Gene3D; 1.10.220.30; -; 3. DR InterPro; IPR000090; Flg_Motor_Flig. DR InterPro; IPR023087; Flg_Motor_Flig_C. DR InterPro; IPR011002; FliG_a-hlx. DR InterPro; IPR032779; FliG_M. DR InterPro; IPR028263; FliG_N. DR PANTHER; PTHR30534; PTHR30534; 1. DR Pfam; PF01706; FliG_C; 1. DR Pfam; PF14841; FliG_M; 1. DR Pfam; PF14842; FliG_N; 1. DR PIRSF; PIRSF003161; FliG; 1. DR PRINTS; PR00954; FLGMOTORFLIG. DR SUPFAM; SSF48029; SSF48029; 2. DR TIGRFAMs; TIGR00207; fliG; 1. PE 1: Evidence at protein level; KW 3D-structure; Bacterial flagellum; Cell inner membrane; Cell membrane; KW Chemotaxis; Complete proteome; Flagellar rotation; Membrane; KW Reference proteome. FT CHAIN 1 343 Flagellar motor switch protein FliG. FT /FTId=PRO_0000421839. FT MOTIF 137 140 Part of the EHPQR-motif. FT MOTIF 245 248 M-F-X-F motif; its intrinsic flexibility FT is probably coupled to flagellar FT rotation. {ECO:0000269|PubMed:22325779}. FT SITE 172 172 Part of the EHPQR-motif. FT MUTAGEN 209 209 R->C: A prominent downward mobility shift FT in SDS-PAGE and a reduction in the FT fluorescence intensity upon 5- FT iodoacetamidofluorescein (5-IAF) FT haloalkylation after cysteine cross- FT linking suggest formation of disulfide FT bonds, hence closeness of corresponding FT wild-type residues; when associated with FT C-325. {ECO:0000269|PubMed:22325779}. FT MUTAGEN 217 217 R->C: A slight downward mobility shift in FT SDS-PAGE and a reduction in the FT fluorescence intensity upon 5- FT iodoacetamidofluorescein (5-IAF) FT haloalkylation after cysteine cross- FT linking suggest formation of disulfide FT bonds, hence closeness of corresponding FT wild-type residues; when associated with FT C-325. {ECO:0000269|PubMed:22325779}. FT MUTAGEN 222 222 S->C: A prominent downward mobility shift FT in SDS-PAGE and a reduction in the FT fluorescence intensity upon 5- FT iodoacetamidofluorescein (5-IAF) FT haloalkylation after cysteine cross- FT linking suggest formation of disulfide FT bonds, hence closeness of corresponding FT wild-type residues; when associated with FT C-325. {ECO:0000269|PubMed:22325779}. FT MUTAGEN 243 243 E->C: A complete upward mobility shift in FT SDS-PAGE and a reduction in the FT fluorescence intensity upon 5- FT iodoacetamidofluorescein (5-IAF) FT haloalkylation after cysteine cross- FT linking suggest formation of disulfide FT bonds, hence closeness of corresponding FT wild-type residues; when associated with FT C-325. {ECO:0000269|PubMed:22325779}. FT MUTAGEN 325 325 Q->C: No mobility shift in SDS-PAGE nor FT reduction in the fluorescence intensity FT upon 5-iodoacetamidofluorescein (5-IAF) FT haloalkylation after cysteine cross- FT linking. A mobility shift and reduction FT in the fluorescence intensity after FT cysteine cross-linking suggest formation FT of disulfide bonds, hence closeness of FT corresponding wild-type residues; when FT associated either with C-209; C-217; C- FT 222 or C-243. FT {ECO:0000269|PubMed:22325779}. FT TURN 116 119 {ECO:0000244|PDB:3USY}. FT HELIX 120 124 {ECO:0000244|PDB:3USW}. FT HELIX 127 134 {ECO:0000244|PDB:3USW}. FT HELIX 139 146 {ECO:0000244|PDB:3USW}. FT HELIX 151 158 {ECO:0000244|PDB:3USW}. FT HELIX 163 173 {ECO:0000244|PDB:3USW}. FT HELIX 181 194 {ECO:0000244|PDB:3USW}. FT HELIX 196 199 {ECO:0000244|PDB:3USY}. FT HELIX 208 216 {ECO:0000244|PDB:3USW}. FT HELIX 220 233 {ECO:0000244|PDB:3USW}. FT HELIX 235 244 {ECO:0000244|PDB:3USW}. FT HELIX 248 253 {ECO:0000244|PDB:3USW}. FT HELIX 256 265 {ECO:0000244|PDB:3USW}. FT HELIX 268 274 {ECO:0000244|PDB:3USW}. FT HELIX 275 277 {ECO:0000244|PDB:3USW}. FT HELIX 280 288 {ECO:0000244|PDB:3USW}. FT HELIX 292 305 {ECO:0000244|PDB:3USW}. FT HELIX 310 329 {ECO:0000244|PDB:3USW}. SQ SEQUENCE 343 AA; 38326 MW; 861214ED1782980A CRC64; MATKLTPKQK AQLDELSMSE KIAILLIQVG EDTTGEILRH LDIDSITEIS KQIVQLNGTD KQIGAAVLEE FFAIFQSNQY INTGGLEYAR ELLTRTLGSE EAKKVMDKLT KSLQTQKNFA YLGKIKPQQL ADFIINEHPQ TIALILAHME APNAAETLSY FPDEMKAEIS IRMANLGEIS PQVVKRVSTV LENKLESLTS YKIEVGGLRA VAEIFNRLGQ KSAKTTLARI ESVDNKLAGA IKEMMFTFED IVKLDNFAIR EILKVADKKD LSLALKTSTK DLTDKFLNNM SSRAAEQFVE EMQYLGAVKI KDVDVAQRKI IEIVQSLQEK GVIQTGEEED VIE // ID FLAB_HELPY Reviewed; 514 AA. AC Q07911; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 4. DT 09-DEC-2015, entry version 106. DE RecName: Full=Flagellin B; DE AltName: Full=Flagellin N; GN Name=flaB; OrderedLocusNames=HP_0115; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=8501031; RA Suerbaum S., Josenhans C., Labigne A.; RT "Cloning and genetic characterization of the Helicobacter pylori and RT Helicobacter mustelae flaB flagellin genes and construction of H. RT pylori flaA- and flaB-negative mutants by electroporation-mediated RT allelic exchange."; RL J. Bacteriol. 175:3278-3288(1993). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP PROTEIN SEQUENCE OF 2-21. RC STRAIN=NTCC 11637 / Isolate 915; RX PubMed=1704004; RA Kostrzynska M., Betts J.D., Austin J.W., Trust T.J.; RT "Identification, characterization, and spatial localization of two RT flagellin species in Helicobacter pylori flagella."; RL J. Bacteriol. 173:937-946(1991). CC -!- FUNCTION: Flagellin is the subunit protein which polymerizes to CC form the filaments of bacterial flagella. Important for motility CC and virulence. CC -!- SUBUNIT: Heteropolymer of FlaA and FlaB. FlaB is located proximal CC to the hook while the remainder of the filament is composed of the CC predominant FlaA. CC -!- INTERACTION: CC O25448:HP_0753; NbExp=3; IntAct=EBI-7500186, EBI-7499990; CC -!- SUBCELLULAR LOCATION: Secreted. Bacterial flagellum. CC -!- SIMILARITY: Belongs to the bacterial flagellin family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; L08907; AAA25016.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07183.1; -; Genomic_DNA. DR PIR; C64534; C64534. DR RefSeq; NP_206915.1; NC_000915.1. DR RefSeq; WP_000010001.1; NC_000915.1. DR ProteinModelPortal; Q07911; -. DR SMR; Q07911; 475-513. DR DIP; DIP-3194N; -. DR IntAct; Q07911; 3. DR MINT; MINT-162512; -. DR STRING; 85962.HP0115; -. DR PaxDb; Q07911; -. DR PRIDE; Q07911; -. DR EnsemblBacteria; AAD07183; AAD07183; HP_0115. DR GeneID; 900158; -. DR KEGG; hpy:HP0115; -. DR PATRIC; 20591445; VBIHelPyl33062_0122. DR eggNOG; ENOG4105I03; Bacteria. DR eggNOG; COG1344; LUCA. DR KO; K02406; -. DR OMA; FRTNNYG; -. DR OrthoDB; EOG6X9MHB; -. DR BioCyc; HPY:HP0115-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009420; C:bacterial-type flagellum filament; IEA:InterPro. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR Gene3D; 1.20.1330.10; -; 2. DR InterPro; IPR001492; Flagellin. DR InterPro; IPR001029; Flagellin_D0/D1. DR InterPro; IPR010810; Flagellin_hook_IN_motif. DR Pfam; PF00700; Flagellin_C; 1. DR Pfam; PF07196; Flagellin_IN; 2. DR Pfam; PF00669; Flagellin_N; 1. DR PRINTS; PR00207; FLAGELLIN. PE 1: Evidence at protein level; KW Bacterial flagellum; Complete proteome; Direct protein sequencing; KW Reference proteome; Secreted; Virulence. FT INIT_MET 1 1 Removed. {ECO:0000269|PubMed:1704004}. FT CHAIN 2 514 Flagellin B. FT /FTId=PRO_0000182612. FT VARIANT 155 155 A -> T (in strain: 85P). FT VARIANT 182 182 A -> E (in strain: 85P). FT VARIANT 190 191 AQ -> GA (in strain: 85P). FT VARIANT 335 335 A -> T (in strain: 85P). SQ SEQUENCE 514 AA; 53882 MW; 1E3D0728BD14A584 CRC64; MSFRINTNIA ALTSHAVGVQ NNRDLSSSLE KLSSGLRINK AADDSSGMAI ADSLRSQSAN LGQAIRNAND AIGMVQTADK AMDEQIKILD TIKTKAVQAA QDGQTLESRR ALQSDIQRLL EELDNIANTT SFNGQQMLSG SFSNKEFQIG AYSNATVKAS IGSTSSDKIG HVRMETSSFS GAGMLASAAA QNLTEVGLNF KQVNGVNDYK IETVRISTSA GTGIGALSEI INRFSNTLGV RASYNVMATG GTPVQSGTVR ELTINGVEIG TVNDVHKNDA DGRLTNAINS VKDRTGVEAS LDIQGRINLH SIDGRAISVH AASASGQVFG GGNFAGISGT QHAVIGRLTL TRTDARDIIV SGVNFSHVGF HSAQGVAEYT VNLRAVRGIF DANVASAAGA NANGAQAETN SQGIGAGVTS LKGAMIVMDM ADSARTQLDK IRSDMGSVQM ELVTTINNIS VTQVNVKAAE SQIRDVDFAE ESANFSKYNI LAQSGSFAMA QANAVQQNVL RLLQ // ID FLGI_HELPY Reviewed; 342 AA. AC O25028; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Flagellar P-ring protein; DE AltName: Full=Basal body P-ring protein; DE Flags: Precursor; GN Name=flgI; OrderedLocusNames=HP_0246; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Assembles around the rod to form the L-ring and probably CC protects the motor/basal body from shearing forces during CC rotation. {ECO:0000250}. CC -!- SUBUNIT: The basal body constitutes a major portion of the CC flagellar organelle and consists of four rings (L,P,S, and M) CC mounted on a central rod. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000250}. Bacterial flagellum CC basal body {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FlgI family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07314.1; -; Genomic_DNA. DR PIR; F64550; F64550. DR RefSeq; NP_207044.1; NC_000915.1. DR RefSeq; WP_000832067.1; NC_018939.1. DR ProteinModelPortal; O25028; -. DR DIP; DIP-3337N; -. DR IntAct; O25028; 1. DR MINT; MINT-161224; -. DR STRING; 85962.HP0246; -. DR PaxDb; O25028; -. DR PRIDE; O25028; -. DR EnsemblBacteria; AAD07314; AAD07314; HP_0246. DR GeneID; 899049; -. DR KEGG; heo:C694_01245; -. DR KEGG; hpy:HP0246; -. DR PATRIC; 20591717; VBIHelPyl33062_0257. DR eggNOG; ENOG4105D92; Bacteria. DR eggNOG; COG1706; LUCA. DR KO; K02394; -. DR OMA; NTQDLDN; -. DR OrthoDB; EOG64JFMG; -. DR BioCyc; HPY:HP0246-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009428; C:bacterial-type flagellum basal body, distal rod, P ring; IEA:InterPro. DR GO; GO:0030288; C:outer membrane-bounded periplasmic space; IEA:InterPro. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR HAMAP; MF_00416; FlgI; 1. DR InterPro; IPR001782; Flag_FlgI. DR Pfam; PF02119; FlgI; 1. DR PRINTS; PR01010; FLGPRINGFLGI. PE 3: Inferred from homology; KW Bacterial flagellum; Complete proteome; Periplasm; Reference proteome; KW Signal. FT SIGNAL 1 15 {ECO:0000255}. FT CHAIN 16 342 Flagellar P-ring protein. FT /FTId=PRO_0000009507. SQ SEQUENCE 342 AA; 36657 MW; 9F9CB9E5FD7A0766 CRC64; MKRVFLWLIF VLAFHKLLAE KIGDIASVVG VRDNQLIGYG LVIGLNGTGD KSGSKFTMQS ISNMLESVNV KISADDIKSK NVAAVMITAS LPPFARQGDK IDIHISSIGD AKSIQGGTLV MTPLNAVDGN IYALAQGAIV SGNSNNLLSA NIINGATIER EVSYDLFHKN AMTLSLKNPN FKNAIQVQNT LNKVFGNKVA IALDPKTIQI TRPERFSMVE FLALVQEIPI NYSAKNKIIV DEKSGTIVSG VDIMVHPVVV TSQDITLKIT KDPLNDSKNT QDLDNNMSLD TAHNTLSSNG KNITIAGVVK ALQKIGVSAK GMVSILQALK KSGAISAEME IL // ID FLIE_HELPY Reviewed; 109 AA. AC P67708; O26079; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 66. DE RecName: Full=Flagellar hook-basal body complex protein FliE; GN Name=fliE; OrderedLocusNames=HP_1557; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FliE family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08597.1; -; Genomic_DNA. DR PIR; E64714; E64714. DR RefSeq; NP_208348.1; NC_000915.1. DR RefSeq; WP_001147918.1; NC_018939.1. DR ProteinModelPortal; P67708; -. DR IntAct; P67708; 3. DR STRING; 85962.HP1557; -. DR PaxDb; P67708; -. DR PRIDE; P67708; -. DR DNASU; 899734; -. DR EnsemblBacteria; AAD08597; AAD08597; HP_1557. DR GeneID; 899734; -. DR KEGG; heo:C694_08070; -. DR KEGG; hpy:HP1557; -. DR PATRIC; 20594539; VBIHelPyl33062_1637. DR eggNOG; ENOG41084DA; Bacteria. DR eggNOG; COG1677; LUCA. DR KO; K02408; -. DR OMA; TAVIAME; -. DR OrthoDB; EOG60GRZ6; -. DR BioCyc; HPY:HP1557-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR HAMAP; MF_00724; FliE; 1. DR InterPro; IPR001624; FliE. DR Pfam; PF02049; FliE; 1. DR PRINTS; PR01006; FLGHOOKFLIE. DR TIGRFAMs; TIGR00205; fliE; 1. PE 3: Inferred from homology; KW Bacterial flagellum; Complete proteome; Reference proteome. FT CHAIN 1 109 Flagellar hook-basal body complex protein FT FliE. FT /FTId=PRO_0000105546. SQ SEQUENCE 109 AA; 12196 MW; E6F8B070D721D3F3 CRC64; MQAIHNDKSL LSPFSELNTD NRTKREESGS TFKEQKGGEF SKLLKQSINE LNNTQEQSDK ALADMATGQI KDLHQAAIAI GKAETSMKLM LEVRNKAISA YKELLRTQI // ID FLAA_HELPY Reviewed; 510 AA. AC P0A0S1; Q03843; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 09-DEC-2015, entry version 67. DE RecName: Full=Flagellin A; GN Name=flaA; OrderedLocusNames=HP_0601; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 2-14. RC STRAIN=NTCC 11637 / Isolate 898-1; RX PubMed=1435261; DOI=10.1111/j.1365-2958.1992.tb01466.x; RA Leying H., Suerbaum S., Geis G., Haas R.; RT "Cloning and genetic characterization of a Helicobacter pylori RT flagellin gene."; RL Mol. Microbiol. 6:2863-2874(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP PROTEIN SEQUENCE OF 2-27, AND CHARACTERIZATION. RC STRAIN=NTCC 11637 / Isolate 5294, and NTCC 11637 / Isolate 915; RX PubMed=1704004; RA Kostrzynska M., Betts J.D., Austin J.W., Trust T.J.; RT "Identification, characterization, and spatial localization of two RT flagellin species in Helicobacter pylori flagella."; RL J. Bacteriol. 173:937-946(1991). CC -!- FUNCTION: Flagellin is the subunit protein which polymerizes to CC form the filaments of bacterial flagella. Important for motility CC and virulence. CC -!- SUBUNIT: Heteropolymer of FlaA and FlaB. FlaB is located proximal CC to the hook while the remainder of the filament is composed of the CC predominant FlaA. CC -!- SUBCELLULAR LOCATION: Secreted. Bacterial flagellum. CC -!- SIMILARITY: Belongs to the bacterial flagellin family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; X60746; CAA43148.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07667.1; -; Genomic_DNA. DR PIR; A64595; A64595. DR RefSeq; NP_207396.1; NC_000915.1. DR RefSeq; WP_000885496.1; NC_018939.1. DR ProteinModelPortal; P0A0S1; -. DR IntAct; P0A0S1; 6. DR MINT; MINT-160330; -. DR STRING; 85962.HP0601; -. DR PaxDb; P0A0S1; -. DR PRIDE; P0A0S1; -. DR EnsemblBacteria; AAD07667; AAD07667; HP_0601. DR GeneID; 899977; -. DR KEGG; heo:C694_03110; -. DR KEGG; hpy:HP0601; -. DR PATRIC; 20592481; VBIHelPyl33062_0629. DR eggNOG; ENOG4105I03; Bacteria. DR eggNOG; COG1344; LUCA. DR KO; K02406; -. DR OMA; RAHASVI; -. DR OrthoDB; EOG6X9MHB; -. DR BioCyc; HPY:HP0601-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009420; C:bacterial-type flagellum filament; IEA:InterPro. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:InterPro. DR GO; GO:0071978; P:bacterial-type flagellum-dependent swarming motility; IMP:CACAO. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR Gene3D; 1.20.1330.10; -; 2. DR InterPro; IPR001492; Flagellin. DR InterPro; IPR001029; Flagellin_D0/D1. DR InterPro; IPR010810; Flagellin_hook_IN_motif. DR Pfam; PF00700; Flagellin_C; 1. DR Pfam; PF07196; Flagellin_IN; 2. DR Pfam; PF00669; Flagellin_N; 1. DR PRINTS; PR00207; FLAGELLIN. PE 1: Evidence at protein level; KW Bacterial flagellum; Complete proteome; Direct protein sequencing; KW Reference proteome; Secreted; Virulence. FT INIT_MET 1 1 Removed. {ECO:0000269|PubMed:1435261, FT ECO:0000269|PubMed:1704004}. FT CHAIN 2 510 Flagellin A. FT /FTId=PRO_0000182609. FT VARIANT 15 15 H -> G (in strain: Isolate 5294). FT CONFLICT 19 19 A -> E (in Ref. 1; CAA43148). FT {ECO:0000305}. SQ SEQUENCE 510 AA; 53284 MW; E802CCB74474A65A CRC64; MAFQVNTNIN AMNAHVQSAL TQNALKTSLE RLSSGLRINK AADDASGMTV ADSLRSQASS LGQAIANTND GMGIIQVADK AMDEQLKILD TVKVKATQAA QDGQTTESRK AIQSDIVRLI QGLDNIGNTT TYNGQALLSG QFTNKEFQVG AYSNQSIKAS IGSTTSDKIG QVRIATGALI TASGDISLTF KQVDGVNDVT LESVKVSSSA GTGIGVLAEV INKNSNRTGV KAYASVITTS DVAVQSGSLS NLTLNGIHLG NIADIKKNDS DGRLVAAINA VTSETGVEAY TDQKGRLNLR SIDGRGIEIK TDSVSNGPSA LTMVNGGQDL TKGSTNYGRL SLTRLDAKSI NVVSASDSQH LGFTAIGFGE SQVAETTVNL RDVTGNFNAN VKSASGANYN AVIASGNQSL GSGVTTLRGA MVVIDIAESA MKMLDKVRSD LGSVQNQMIS TVNNISITQV NVKAAESQIR DVDFAEESAN FNKNNILAQS GSYAMSQANT VQQNILRLLT // ID FLIW1_HELPY Reviewed; 135 AA. AC O25769; DT 23-JAN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Flagellar assembly factor FliW 1; GN Name=fliW1; OrderedLocusNames=HP_1154; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP BINDING TO FLAGELLIN. RX PubMed=11196647; DOI=10.1038/35051615; RA Rain J.-C., Selig L., De Reuse H., Battaglia V., Reverdy C., Simon S., RA Lenzen G., Petel F., Wojcik J., Schaechter V., Chemama Y., Labigne A., RA Legrain P.; RT "The protein-protein interaction map of Helicobacter pylori."; RL Nature 409:211-215(2001). CC -!- FUNCTION: Binds to the C-terminal region of flagellin, which is CC implicated in polymerization, and participates in the assembly of CC the flagellum. {ECO:0000250}. CC -!- SUBUNIT: Interacts with flagellin. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FliW family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08203.1; -; Genomic_DNA. DR PIR; B64664; B64664. DR RefSeq; NP_207945.1; NC_000915.1. DR RefSeq; WP_001105854.1; NC_018939.1. DR ProteinModelPortal; O25769; -. DR DIP; DIP-3307N; -. DR IntAct; O25769; 6. DR MINT; MINT-169612; -. DR STRING; 85962.HP1154; -. DR PaxDb; O25769; -. DR PRIDE; O25769; -. DR DNASU; 899914; -. DR EnsemblBacteria; AAD08203; AAD08203; HP_1154. DR GeneID; 899914; -. DR KEGG; heo:C694_05960; -. DR KEGG; hpy:HP1154; -. DR PATRIC; 20593659; VBIHelPyl33062_1208. DR eggNOG; COG1699; LUCA. DR OMA; FTIPTAD; -. DR OrthoDB; EOG6W722C; -. DR BioCyc; HPY:HP1154-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.290.10; -; 1. DR HAMAP; MF_01185; FliW; 1. DR InterPro; IPR003775; Flagellar_assembly_factor_FliW. DR InterPro; IPR024046; Flagellar_assmbl_FliW_dom. DR Pfam; PF02623; FliW; 1. DR SUPFAM; SSF141457; SSF141457; 1. PE 1: Evidence at protein level; KW Bacterial flagellum biogenesis; Complete proteome; Cytoplasm; KW Reference proteome. FT CHAIN 1 135 Flagellar assembly factor FliW 1. FT /FTId=PRO_0000272999. SQ SEQUENCE 135 AA; 15604 MW; 31D7A4E0A0D00D2D CRC64; MNYFLKAPIL GFEHINEVRL EKIDSLFSRL ISQTNSPMAL DMVLVNPYCL REYSFVIPKY IELLLELDSH SKVEVYCVVV LQKNLEDSMV NFLAPLVFNS KNGFGAQVAL SMMDYPDFGF RDPLKSFVIQ ERERA // ID FRDB_HELPY Reviewed; 245 AA. AC O06914; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 117. DE RecName: Full=Fumarate reductase iron-sulfur subunit; DE EC=1.3.5.1; GN Name=frdB; OrderedLocusNames=HP_0191; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=9434188; DOI=10.1016/S0378-1119(97)00550-7; RA Ge Z., Jiang Q., Kalisiak M.S., Taylor D.E.; RT "Cloning and functional characterization of Helicobacter pylori RT fumarate reductase operon comprising three structural genes coding for RT subunits C, A and B."; RL Gene 204:227-234(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Succinate + a quinone = fumarate + a quinol. CC -!- COFACTOR: CC Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; CC Evidence={ECO:0000250}; CC Note=Binds 1 [2Fe-2S] cluster. {ECO:0000250}; CC -!- COFACTOR: CC Name=[3Fe-4S] cluster; Xref=ChEBI:CHEBI:21137; CC Evidence={ECO:0000250}; CC Note=Binds 1 [3Fe-4S] cluster. {ECO:0000250}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000250}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000250}; CC -!- SUBUNIT: Part of an enzyme complex containing three subunits: a CC flavoprotein, an iron-sulfur, and cytochrome b-556. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the succinate dehydrogenase/fumarate CC reductase iron-sulfur protein family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 2Fe-2S ferredoxin-type domain. CC {ECO:0000255|PROSITE-ProRule:PRU00465}. CC -!- SIMILARITY: Contains 1 4Fe-4S ferredoxin-type domain. CC {ECO:0000255|PROSITE-ProRule:PRU00711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U78101; AAC46065.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07258.1; -; Genomic_DNA. DR PIR; G64543; G64543. DR RefSeq; NP_206990.1; NC_000915.1. DR RefSeq; WP_001282439.1; NC_018939.1. DR ProteinModelPortal; O06914; -. DR SMR; O06914; 6-241. DR IntAct; O06914; 13. DR STRING; 85962.HP0191; -. DR PaxDb; O06914; -. DR PRIDE; O06914; -. DR EnsemblBacteria; AAD07258; AAD07258; HP_0191. DR GeneID; 899155; -. DR KEGG; heo:C694_00950; -. DR KEGG; hpy:HP0191; -. DR PATRIC; 20591603; VBIHelPyl33062_0201. DR eggNOG; ENOG4105E33; Bacteria. DR eggNOG; COG0479; LUCA. DR KO; K00245; -. DR OMA; NTGDWFL; -. DR OrthoDB; EOG6CS02W; -. DR BioCyc; HPY:HP0191-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0051538; F:3 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008177; F:succinate dehydrogenase (ubiquinone) activity; IEA:UniProtKB-EC. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR001041; 2Fe-2S_ferredoxin-type. DR InterPro; IPR006058; 2Fe2S_fd_BS. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR009051; Helical_ferredxn. DR InterPro; IPR004489; Succ_DH/fum_Rdtase_Fe-S. DR InterPro; IPR025192; Succ_DH/fum_Rdtase_N. DR Pfam; PF13085; Fer2_3; 1. DR Pfam; PF13183; Fer4_8; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR SUPFAM; SSF54292; SSF54292; 1. DR TIGRFAMs; TIGR00384; dhsB; 1. DR PROSITE; PS00197; 2FE2S_FER_1; 1. DR PROSITE; PS51085; 2FE2S_FER_2; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 1. PE 3: Inferred from homology; KW 2Fe-2S; 3Fe-4S; 4Fe-4S; Complete proteome; Electron transport; Iron; KW Iron-sulfur; Metal-binding; Oxidoreductase; Reference proteome; KW Transport; Tricarboxylic acid cycle. FT CHAIN 1 245 Fumarate reductase iron-sulfur subunit. FT /FTId=PRO_0000158703. FT DOMAIN 17 98 2Fe-2S ferredoxin-type. FT {ECO:0000255|PROSITE-ProRule:PRU00465}. FT DOMAIN 145 174 4Fe-4S ferredoxin-type. FT {ECO:0000255|PROSITE-ProRule:PRU00711}. FT METAL 60 60 Iron-sulfur 1 (2Fe-2S). {ECO:0000250}. FT METAL 65 65 Iron-sulfur 1 (2Fe-2S). {ECO:0000250}. FT METAL 68 68 Iron-sulfur 1 (2Fe-2S). {ECO:0000250}. FT METAL 80 80 Iron-sulfur 1 (2Fe-2S). {ECO:0000250}. FT METAL 154 154 Iron-sulfur 2 (4Fe-4S). {ECO:0000250}. FT METAL 157 157 Iron-sulfur 2 (4Fe-4S). {ECO:0000250}. FT METAL 160 160 Iron-sulfur 2 (4Fe-4S). {ECO:0000250}. FT METAL 164 164 Iron-sulfur 3 (3Fe-4S). {ECO:0000250}. FT METAL 211 211 Iron-sulfur 3 (3Fe-4S). {ECO:0000250}. FT METAL 217 217 Iron-sulfur 3 (3Fe-4S). {ECO:0000250}. FT METAL 221 221 Iron-sulfur 2 (4Fe-4S). {ECO:0000250}. FT CONFLICT 140 140 V -> I (in Ref. 1; AAC46065). FT {ECO:0000305}. FT CONFLICT 194 194 N -> S (in Ref. 1; AAC46065). FT {ECO:0000305}. SQ SEQUENCE 245 AA; 27652 MW; D54447471FB4C499 CRC64; MSDNERTIVV RVLKFDPQSA VSKPHFKEYQ LKETPSMTLF IALNLIREHQ DPDLSFDFVC RAGICGSCAM MVNGRPRLAC KTLTSSFESG VITLMPMPSF TLIKDLSVNT GDWFLDMTKR VESWAHSKEE VDITRPEKRV EPDEAQEVFE LDRCIECGCC IASCGTKLMR PNFIGAAGMN RAMRFMIDSH DERNDDDFYE LVGDDDGVFG CMSLIACHDT CPKELPLQSS IATLRNRMLK VGKSR // ID FLGH_HELPY Reviewed; 237 AA. AC O25092; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Flagellar L-ring protein; DE AltName: Full=Basal body L-ring protein; DE Flags: Precursor; GN Name=flgH; OrderedLocusNames=HP_0325; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Assembles around the rod to form the L-ring and probably CC protects the motor/basal body from shearing forces during CC rotation. {ECO:0000250}. CC -!- SUBUNIT: The basal body constitutes a major portion of the CC flagellar organelle and consists of four rings (L,P,S, and M) CC mounted on a central rod. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000250}. Bacterial CC flagellum basal body {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FlgH family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07392.1; -; Genomic_DNA. DR PIR; E64560; E64560. DR RefSeq; NP_207123.1; NC_000915.1. DR RefSeq; WP_000709989.1; NC_018939.1. DR ProteinModelPortal; O25092; -. DR DIP; DIP-3206N; -. DR IntAct; O25092; 13. DR MINT; MINT-161216; -. DR STRING; 85962.HP0325; -. DR PaxDb; O25092; -. DR PRIDE; O25092; -. DR DNASU; 900196; -. DR EnsemblBacteria; AAD07392; AAD07392; HP_0325. DR GeneID; 900196; -. DR KEGG; heo:C694_01645; -. DR KEGG; hpy:HP0325; -. DR PATRIC; 20591883; VBIHelPyl33062_0339. DR eggNOG; ENOG4107W7W; Bacteria. DR eggNOG; COG2063; LUCA. DR KO; K02393; -. DR OMA; EGPLGNN; -. DR OrthoDB; EOG6GTZJM; -. DR BioCyc; HPY:HP0325-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009427; C:bacterial-type flagellum basal body, distal rod, L ring; IEA:InterPro. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR HAMAP; MF_00415; FlgH; 1. DR InterPro; IPR000527; Flag_Lring. DR Pfam; PF02107; FlgH; 1. DR PRINTS; PR01008; FLGLRINGFLGH. PE 3: Inferred from homology; KW Bacterial flagellum; Cell outer membrane; Complete proteome; Membrane; KW Reference proteome; Signal. FT SIGNAL 1 21 {ECO:0000255}. FT CHAIN 22 237 Flagellar L-ring protein. FT /FTId=PRO_0000009451. SQ SEQUENCE 237 AA; 26469 MW; C0D1E43DDE42F6F9 CRC64; MKKALYLGAV AFSVAFSMAS ANEPKIDFNP PNYVEETPSK EFIPELNKLG SLFGQGERPL FADRRAMKPN DLITIIVSEK ASANYSSSKD YKSASGGNST PPRLTYNGLD ERKKKEAEYL DDKNNYNFTK SSNNTNFKGG GSQKKSEDLE IVLSARIIKV LENGNYFIYG NKEVLVDGEK QILKVSGVIR PYDIERNNTI QSKFLADAKI EYTNLGHLSD SNKKKFAADA METQMPY // ID FLHA_HELPY Reviewed; 733 AA. AC O06758; O06759; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 104. DE RecName: Full=Flagellar biosynthesis protein FlhA; GN Name=flhA; Synonyms=flbA; OrderedLocusNames=HP_1041; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RA Schmitz A., Josenhans C., Suerbaum S.; RL Submitted (MAY-1997) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 93-733. RC STRAIN=ATCC 49503 / 60190; RA Fauconnier A., Lage A., Bollen A., Godfroid E.; RL Submitted (MAY-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the export of flagellum proteins. CC -!- INTERACTION: CC O25747:HP_1122; NbExp=2; IntAct=EBI-6407872, EBI-527952; CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the FHIPEP (flagella/HR/invasion proteins CC export pore) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08087.1; -; Genomic_DNA. DR EMBL; Y13395; CAA73825.1; -; Genomic_DNA. DR EMBL; Y08762; CAA70007.1; -; Genomic_DNA. DR PIR; A64650; A64650. DR RefSeq; NP_207831.1; NC_000915.1. DR RefSeq; WP_001262893.1; NC_018939.1. DR PDB; 3MYD; X-ray; 2.40 A; A=373-732. DR PDBsum; 3MYD; -. DR ProteinModelPortal; O06758; -. DR DIP; DIP-3095N; -. DR IntAct; O06758; 10. DR MINT; MINT-164134; -. DR STRING; 85962.HP1041; -. DR PaxDb; O06758; -. DR PRIDE; O06758; -. DR EnsemblBacteria; AAD08087; AAD08087; HP_1041. DR GeneID; 899576; -. DR KEGG; heo:C694_05385; -. DR KEGG; hpy:HP1041; -. DR PATRIC; 20593419; VBIHelPyl33062_1090. DR eggNOG; ENOG4105D7B; Bacteria. DR eggNOG; COG1298; LUCA. DR KO; K02400; -. DR OMA; ETKELGW; -. DR OrthoDB; EOG6RZB0J; -. DR BioCyc; HPY:HP1041-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR InterPro; IPR025505; FHIPEP_CS. DR InterPro; IPR006301; FlhA. DR InterPro; IPR001712; T3SS_FHIPEP. DR Pfam; PF00771; FHIPEP; 1. DR PIRSF; PIRSF005419; FlhA; 1. DR PRINTS; PR00949; TYPE3IMAPROT. DR TIGRFAMs; TIGR01398; FlhA; 1. DR PROSITE; PS00994; FHIPEP; 1. PE 1: Evidence at protein level; KW 3D-structure; Bacterial flagellum biogenesis; KW Bacterial flagellum protein export; Cell membrane; Complete proteome; KW Membrane; Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 733 Flagellar biosynthesis protein FlhA. FT /FTId=PRO_0000190018. FT TRANSMEM 28 48 Helical. {ECO:0000255}. FT TRANSMEM 49 69 Helical. {ECO:0000255}. FT TRANSMEM 125 145 Helical. {ECO:0000255}. FT TRANSMEM 213 233 Helical. {ECO:0000255}. FT TRANSMEM 246 266 Helical. {ECO:0000255}. FT TRANSMEM 291 311 Helical. {ECO:0000255}. FT TRANSMEM 313 333 Helical. {ECO:0000255}. FT CONFLICT 113 113 D -> I (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 267 267 A -> R (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 305 307 LLL -> YC (in Ref. 1). {ECO:0000305}. FT CONFLICT 309 309 A -> C (in Ref. 1). {ECO:0000305}. FT CONFLICT 324 324 T -> A (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 370 370 T -> A (in Ref. 1 and 3). {ECO:0000305}. FT CONFLICT 381 381 L -> I (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 407 407 I -> Y (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 670 670 V -> A (in Ref. 1; CAA73825). FT {ECO:0000305}. FT CONFLICT 670 670 V -> G (in Ref. 3; CAA70007). FT {ECO:0000305}. FT CONFLICT 710 710 I -> V (in Ref. 3; CAA70007). FT {ECO:0000305}. FT HELIX 388 393 {ECO:0000244|PDB:3MYD}. FT STRAND 398 402 {ECO:0000244|PDB:3MYD}. FT HELIX 404 409 {ECO:0000244|PDB:3MYD}. FT HELIX 412 414 {ECO:0000244|PDB:3MYD}. FT HELIX 418 423 {ECO:0000244|PDB:3MYD}. FT HELIX 425 433 {ECO:0000244|PDB:3MYD}. FT STRAND 441 444 {ECO:0000244|PDB:3MYD}. FT STRAND 452 457 {ECO:0000244|PDB:3MYD}. FT STRAND 460 466 {ECO:0000244|PDB:3MYD}. FT STRAND 471 475 {ECO:0000244|PDB:3MYD}. FT STRAND 486 490 {ECO:0000244|PDB:3MYD}. FT TURN 492 494 {ECO:0000244|PDB:3MYD}. FT STRAND 497 501 {ECO:0000244|PDB:3MYD}. FT HELIX 503 505 {ECO:0000244|PDB:3MYD}. FT HELIX 506 511 {ECO:0000244|PDB:3MYD}. FT STRAND 515 517 {ECO:0000244|PDB:3MYD}. FT HELIX 519 533 {ECO:0000244|PDB:3MYD}. FT HELIX 535 538 {ECO:0000244|PDB:3MYD}. FT HELIX 541 552 {ECO:0000244|PDB:3MYD}. FT HELIX 556 561 {ECO:0000244|PDB:3MYD}. FT HELIX 562 564 {ECO:0000244|PDB:3MYD}. FT HELIX 567 579 {ECO:0000244|PDB:3MYD}. FT HELIX 587 597 {ECO:0000244|PDB:3MYD}. FT HELIX 598 601 {ECO:0000244|PDB:3MYD}. FT HELIX 605 614 {ECO:0000244|PDB:3MYD}. FT HELIX 617 624 {ECO:0000244|PDB:3MYD}. FT STRAND 629 636 {ECO:0000244|PDB:3MYD}. FT HELIX 638 646 {ECO:0000244|PDB:3MYD}. FT STRAND 648 651 {ECO:0000244|PDB:3MYD}. FT STRAND 654 657 {ECO:0000244|PDB:3MYD}. FT HELIX 661 680 {ECO:0000244|PDB:3MYD}. FT STRAND 685 690 {ECO:0000244|PDB:3MYD}. FT HELIX 692 694 {ECO:0000244|PDB:3MYD}. FT HELIX 695 705 {ECO:0000244|PDB:3MYD}. FT STRAND 709 713 {ECO:0000244|PDB:3MYD}. FT HELIX 714 716 {ECO:0000244|PDB:3MYD}. FT STRAND 721 729 {ECO:0000244|PDB:3MYD}. SQ SEQUENCE 733 AA; 80909 MW; C15B4C9EBB3333C5 CRC64; MANERSKLAF KKTFPVFKRF LQSKDLALVV FVIAILAIII VPLPPFVLDF LLTISIALSV LIILIGLYID KPTDFSAFPT LLLIVTLYRL ALNVATTRMI LTQGYKGPSA VSDIITAFGE FSVSGNYVIG AIIFSILVLV NLLVVTNGST RVTEVRARFA LDAMPGKQMA IDADLNSGLI DDKEAKKRRA ALSQEADFYG AMDGASKFVK GDAIASIIIT LINIIGGFLV GVFQRDMSLS FSASTFTILT IGDGLVGQIP ALIIATATGI VATRTTQNEE EDFASKLITQ LTNKSKTLVI VGAILLLFAT IPGLPTFSLA FVGTLFLFIA WLISREGKDG LLTKLENYLS QKFGLDLSEK PHSSKIKPHT PTTRAKTQEE LKREEEQAID EVLKIEFLEL ALGYQLISLA DMKQGGDLLE RIRGIRKKIA SDYGFLMPQI RIRDNLQLPP THYEIKLKGI VIGEGMVMPD KFLAMNTGFV NKEIEGIPTK EPAFGMDALW IETKNKEEAI IQGYTIIDPS TVIATHTSEL VKKYAEDFIT KDEVKSLLER LAKDYPTIVE ESKKIPTGAI RSVLQALLHE KIPIKDMLTI LETITDIAPL VQNDVNILTE QVRARLSRVI TNAFKSEDGR LKFLTFSTDS EQFLLNKLRE NGTSKSLLLN VGELQKLIEV VSEEAMKVLQ KGIAPVILIV EPNLRKALSN QMEQARIDVI VLSHAELDPN SNFEALGTIH INF // ID FLIQ_HELPY Reviewed; 88 AA. AC P0A0S3; O25964; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 11-NOV-2015, entry version 69. DE RecName: Full=Flagellar biosynthetic protein FliQ; GN Name=fliQ; OrderedLocusNames=HP_1419; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=10225855; RA Porwollik S., Noonan B., O'Toole P.W.; RT "Molecular characterization of a flagellar export locus of RT Helicobacter pylori."; RL Infect. Immun. 67:2060-2070(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Role in flagellar biosynthesis. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. Bacterial flagellum basal body CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FliQ/MopD/SpaQ family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U75584; AAB93499.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08461.1; -; Genomic_DNA. DR PIR; C64697; C64697. DR RefSeq; NP_208210.1; NC_000915.1. DR RefSeq; WP_000445741.1; NC_018939.1. DR ProteinModelPortal; P0A0S3; -. DR STRING; 85962.HP1419; -. DR PaxDb; P0A0S3; -. DR EnsemblBacteria; AAD08461; AAD08461; HP_1419. DR GeneID; 899876; -. DR KEGG; heo:C694_07340; -. DR KEGG; hpy:HP1419; -. DR PATRIC; 20594237; VBIHelPyl33062_1488. DR eggNOG; ENOG4105VS8; Bacteria. DR eggNOG; COG1987; LUCA. DR KO; K02420; -. DR OMA; LAGPWMI; -. DR OrthoDB; EOG6CS09R; -. DR BioCyc; HPY:HP1419-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR InterPro; IPR002191; Bac_export_3. DR InterPro; IPR006305; FliQ. DR Pfam; PF01313; Bac_export_3; 1. DR PIRSF; PIRSF004669; FliQ; 1. DR PRINTS; PR00952; TYPE3IMQPROT. DR TIGRFAMs; TIGR01402; fliQ; 1. PE 3: Inferred from homology; KW Bacterial flagellum; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 88 Flagellar biosynthetic protein FliQ. FT /FTId=PRO_0000129100. FT TRANSMEM 17 37 Helical. {ECO:0000255}. FT TRANSMEM 48 68 Helical. {ECO:0000255}. SQ SEQUENCE 88 AA; 9762 MW; E9AB64ECE0F62868 CRC64; MESQLMKLAI ETYKITLMIS LPVLLAGLVV GLLVSIFQAT TQINEMTLSF VPKILAVIGV LILTMPWMTN MLLDYTKTLI KLIPKIIG // ID FLIW2_HELPY Reviewed; 129 AA. AC O25929; DT 23-JAN-2007, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 09-DEC-2015, entry version 84. DE RecName: Full=Flagellar assembly factor FliW 2; GN Name=fliW2; OrderedLocusNames=HP_1377; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP BINDING TO FLAGELLIN. RX PubMed=11196647; DOI=10.1038/35051615; RA Rain J.-C., Selig L., De Reuse H., Battaglia V., Reverdy C., Simon S., RA Lenzen G., Petel F., Wojcik J., Schaechter V., Chemama Y., Labigne A., RA Legrain P.; RT "The protein-protein interaction map of Helicobacter pylori."; RL Nature 409:211-215(2001). CC -!- FUNCTION: Binds to the C-terminal region of flagellin, which is CC implicated in polymerization, and participates in the assembly of CC the flagellum. {ECO:0000250}. CC -!- SUBUNIT: Interacts with flagellin. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FliW family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08427.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08427.1; ALT_INIT; Genomic_DNA. DR PIR; A64692; A64692. DR RefSeq; NP_208168.2; NC_000915.1. DR RefSeq; WP_001862609.1; NC_018939.1. DR ProteinModelPortal; O25929; -. DR DIP; DIP-3274N; -. DR IntAct; O25929; 3. DR MINT; MINT-177028; -. DR STRING; 85962.HP1377; -. DR PaxDb; O25929; -. DR PRIDE; O25929; -. DR DNASU; 900306; -. DR EnsemblBacteria; AAD08427; AAD08427; HP_1377. DR GeneID; 900306; -. DR KEGG; heo:C694_07105; -. DR KEGG; hpy:HP1377; -. DR PATRIC; 20594143; VBIHelPyl33062_1442. DR eggNOG; ENOG410821Z; Bacteria. DR eggNOG; COG1699; LUCA. DR KO; K13626; -. DR OMA; ETIHKMH; -. DR OrthoDB; EOG6W722C; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.290.10; -; 1. DR HAMAP; MF_01185; FliW; 1. DR InterPro; IPR003775; Flagellar_assembly_factor_FliW. DR InterPro; IPR024046; Flagellar_assmbl_FliW_dom. DR Pfam; PF02623; FliW; 1. DR SUPFAM; SSF141457; SSF141457; 1. PE 1: Evidence at protein level; KW Bacterial flagellum biogenesis; Complete proteome; Cytoplasm; KW Reference proteome. FT CHAIN 1 129 Flagellar assembly factor FliW 2. FT /FTId=PRO_0000273000. SQ SEQUENCE 129 AA; 14862 MW; EFB0B7364D52B65A CRC64; MIFDVKAPIL GFETIHKMRL QKIDEIFLRL NSTEENSVVS FTLVNPFALR KYEFEVPTPL KILLELEGAK SVLVANIMVV QTPIELSTVN YLAPLIFNLD KQLMGQVVLD SNKYPHYHLR ENILSHTHE // ID FTSW_HELPY Reviewed; 388 AA. AC P56096; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=Putative lipid II flippase FtsW; DE AltName: Full=Cell division protein FtsW; GN Name=ftsW; OrderedLocusNames=HP_1560; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Essential cell division protein. Transports lipid-linked CC peptidoglycan precursors from the inner to the outer leaflet of CC the cytoplasmic membrane (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. Note=Localizes to the CC division septum. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the SEDS family. FtsW subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08600.1; -; Genomic_DNA. DR PIR; H64714; H64714. DR RefSeq; NP_208351.1; NC_000915.1. DR RefSeq; WP_000205898.1; NC_000915.1. DR ProteinModelPortal; P56096; -. DR IntAct; P56096; 1. DR STRING; 85962.HP1560; -. DR PaxDb; P56096; -. DR PRIDE; P56096; -. DR EnsemblBacteria; AAD08600; AAD08600; HP_1560. DR GeneID; 899731; -. DR KEGG; hpy:HP1560; -. DR PATRIC; 20594547; VBIHelPyl33062_1641. DR eggNOG; ENOG4105CNI; Bacteria. DR eggNOG; COG0772; LUCA. DR KO; K03588; -. DR OMA; RTERHQP; -. DR OrthoDB; EOG6K9QDQ; -. DR BioCyc; HPY:HP1560-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR018365; Cell_cycle_FtsW-rel_CS. DR InterPro; IPR001182; Cell_cycle_FtsW/RodA. DR PANTHER; PTHR30474; PTHR30474; 2. DR Pfam; PF01098; FTSW_RODA_SPOVE; 1. DR PROSITE; PS00428; FTSW_RODA_SPOVE; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell inner membrane; Cell membrane; KW Cell shape; Cell wall biogenesis/degradation; Complete proteome; KW Membrane; Peptidoglycan synthesis; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 388 Putative lipid II flippase FtsW. FT /FTId=PRO_0000062705. FT TOPO_DOM 1 6 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 7 27 Helical. {ECO:0000255}. FT TOPO_DOM 28 38 Periplasmic. {ECO:0000255}. FT TRANSMEM 39 59 Helical. {ECO:0000255}. FT TOPO_DOM 60 70 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 71 91 Helical. {ECO:0000255}. FT TOPO_DOM 92 105 Periplasmic. {ECO:0000255}. FT TRANSMEM 106 126 Helical. {ECO:0000255}. FT TOPO_DOM 127 144 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 145 165 Helical. {ECO:0000255}. FT TOPO_DOM 166 168 Periplasmic. {ECO:0000255}. FT TRANSMEM 169 186 Helical. {ECO:0000255}. FT TOPO_DOM 187 187 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 188 210 Helical. {ECO:0000255}. FT TOPO_DOM 211 294 Periplasmic. {ECO:0000255}. FT TRANSMEM 295 315 Helical. {ECO:0000255}. FT TOPO_DOM 316 327 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 328 348 Helical. {ECO:0000255}. FT TOPO_DOM 349 358 Periplasmic. {ECO:0000255}. FT TRANSMEM 359 379 Helical. {ECO:0000255}. FT TOPO_DOM 380 388 Cytoplasmic. {ECO:0000255}. SQ SEQUENCE 388 AA; 42480 MW; 77195EA88052BBF1 CRC64; MTTDRNLFFC ASLLIFLGVL MSYSLSTYTT VVLYHYGEFH FFIRQLVSAI IGIVIMWGLS RVDPSKWFSR LGFFLLFVPP LLIIGMFFLP ESLSSSAGGA KRWIRLGFFS LAPLEFLKIG FTFFLAWSLS RTFVAKEKAN VKEELITFVP YSVVFVALAI GVGVLQNDLG QIVLLGAVLA VLLVFSGGSV HLFGLIISGA FAISVLAIVT SEHRILRLKL WWSNLQNSLF TLLPDRLANA LRISDLPESY QVFHAGNAMH NGGLFGQGLG LGQIKLGFLS EVHTDMVLAG IAEEWGFLGL CVCFILFSVL IVLIFRIANR LKEPKYSLFC VGVVLLISFS LVINAFGVGG ILPVKGLAVP FLSYGGSSLL ANCIAIGLVL XLARYTKG // ID FLGE_HELPY Reviewed; 718 AA. AC P50610; DT 01-OCT-1996, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 16-MAR-2016, entry version 100. DE RecName: Full=Flagellar hook protein FlgE; GN Name=flgE; OrderedLocusNames=HP_0870; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 1-25, AND RP CHARACTERIZATION. RC STRAIN=CCUG 951, and DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=7891557; DOI=10.1111/j.1365-2958.1994.tb01307.x; RA O'Toole P.W., Kostrzynska M., Trust T.J.; RT "Non-motile mutants of Helicobacter pylori and Helicobacter mustelae RT defective in flagellar hook production."; RL Mol. Microbiol. 14:691-703(1994). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: A flexible structure which links the flagellar filament CC to the drive apparatus in the basal body. Absence of the gene CC leads to absence of the hook protein, lack of the flagellar CC filament and thus loss of mobility. Approximately wild-type levels CC of the flagellar subunits are still produced and accumulate mostly CC in the cytosol. CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body. CC -!- MISCELLANEOUS: The N-terminal amino acid sequence was from strain CC CCUG 951; the DNA sequence was from strain CCUG 17874. Disruption CC and subcellular localization experiments were performed for both CC strains. The apparent pI for the hook protein was 5.1. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U09549; AAA92803.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07911.1; -; Genomic_DNA. DR PIR; F64628; F64628. DR RefSeq; NP_207664.1; NC_000915.1. DR RefSeq; WP_000946389.1; NC_018939.1. DR ProteinModelPortal; P50610; -. DR DIP; DIP-3456N; -. DR IntAct; P50610; 6. DR MINT; MINT-162602; -. DR STRING; 85962.HP0870; -. DR PaxDb; P50610; -. DR PRIDE; P50610; -. DR EnsemblBacteria; AAD07911; AAD07911; HP_0870. DR GeneID; 899399; -. DR KEGG; heo:C694_04455; -. DR KEGG; hpy:HP0870; -. DR PATRIC; 20593029; VBIHelPyl33062_0902. DR eggNOG; ENOG4105BZE; Bacteria. DR eggNOG; COG1749; LUCA. DR KO; K02390; -. DR OMA; DVESNNI; -. DR OrthoDB; EOG6G7R1D; -. DR BioCyc; HPY:HP0870-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR011491; Falgellar_hook_FlgE. DR InterPro; IPR001444; Flag_bb_rod_N. DR InterPro; IPR020013; Flagellar_FlgE/F/G. DR InterPro; IPR010810; Flagellin_hook_IN_motif. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR InterPro; IPR012835; FlgE_epsilon. DR Pfam; PF07559; FlaE; 1. DR Pfam; PF07196; Flagellin_IN; 1. DR Pfam; PF00460; Flg_bb_rod; 1. DR Pfam; PF06429; Flg_bbr_C; 1. DR TIGRFAMs; TIGR02489; flgE_epsilon; 1. DR TIGRFAMs; TIGR03506; FlgEFG_subfam; 2. PE 1: Evidence at protein level; KW Bacterial flagellum; Complete proteome; Direct protein sequencing; KW Reference proteome. FT CHAIN 1 718 Flagellar hook protein FlgE. FT /FTId=PRO_0000180828. FT CONFLICT 106 106 S -> N (in Ref. 1; AAA92803). FT {ECO:0000305}. FT CONFLICT 237 237 C -> Y (in Ref. 1; AAA92803). FT {ECO:0000305}. FT CONFLICT 259 259 A -> P (in Ref. 1; AAA92803). FT {ECO:0000305}. FT CONFLICT 373 374 DI -> NS (in Ref. 1; AAA92803). FT {ECO:0000305}. FT CONFLICT 413 414 SV -> TI (in Ref. 1; AAA92803). FT {ECO:0000305}. FT CONFLICT 509 509 E -> D (in Ref. 1; AAA92803). FT {ECO:0000305}. SQ SEQUENCE 718 AA; 76207 MW; F36EB60684AD1333 CRC64; MLRSLWSGVN GMQAHQIALD IESNNIANVN TTGFKYSRAS FVDMLSQVKL IATAPYKNGL AGQNDFSVGL GVGVDATTKI FSQGNIQNTD VKTDLAIQGD GFFIISPDRG ITRNFTRDGE FLFDSQGSLV TTGGLVVQGW VRNGSDTGNK GSDTDALKVD NTGPLENIRI DPGMVMPARA SNRISMRANL NAGRHADQTA AIFALDSSAK TPSDGINPVY DSGTNLAQVA EDMGSLCNED GDALLLNENQ GIWVSYKSAK MVKDILPSAE NSTLELNGVK ISFTNDSAVS RTSSLVAAKN AINAVKSQTG IEAYLDGKQL RLENTNELDG DEKLKNIVVT QAGTGAFANF LDGDKDVTAF KYSYTHSISP NADIGQFRTT EDLRALIQHD ANIVKDPSLA DNYQDSAASI GVSVNQYGMF EINNKDNKNV IKENLNIFVS GYSSDSVTNN VLFKNAMKGL NTASLIEGGA SASSSKFTHA THATSIDVID SLGTKHAMRI EFYRSGGAEW NFRVIVPEPG ELVGGSAARP NVFEGGRLHF NNDGSLAGMN PPLLQFDPKN GADAPQRINL AFGSSGSFDG LTSVDKISET YAIEQNGYQA GDLMDVRFDS DGVLLGAFSN GRTLALAQVA LANFANDAGL QALGGNVFSQ TGNSGQALIG AANTGRRGSI SGSKLESSNV DLSRSLTNLI VVQRGFQANS KAVTTSDQIL NTLLNLKQ // ID FLID_HELPY Reviewed; 685 AA. AC P96786; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 4. DT 11-NOV-2015, entry version 91. DE RecName: Full=Flagellar hook-associated protein 2; DE Short=HAP2; DE AltName: Full=Filament cap protein; DE AltName: Full=Flagellar cap protein; GN Name=fliD; OrderedLocusNames=HP_0752; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 2-16, AND RP CHARACTERIZATION. RC STRAIN=KCTC 0217BP; RX PubMed=10559162; RA Kim J.S., Chang J.H., Chung S.I., Yum J.S.; RT "Molecular cloning and characterization of the Helicobacter pylori RT fliD gene, an essential factor in flagellar structure and motility."; RL J. Bacteriol. 181:6969-6976(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for the morphogenesis and for the elongation of CC the flagellar filament by facilitating polymerization of the CC flagellin monomers at the tip of growing filament. Forms a capping CC structure, which prevents flagellin subunits (transported through CC the central channel of the flagellum) from leaking out without CC polymerization at the distal end. Essential to colonize and CC establish infection in gastric mucosa as a result of its essential CC role in motility. Has effect on flaA gene transcription. CC -!- SUBUNIT: Homopentamer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Secreted. Bacterial flagellum. CC -!- SIMILARITY: Belongs to the FliD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U82981; AAC35999.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07800.1; -; Genomic_DNA. DR PIR; H64613; H64613. DR RefSeq; NP_207545.1; NC_000915.1. DR DIP; DIP-3401N; -. DR IntAct; P96786; 1. DR MINT; MINT-176105; -. DR STRING; 85962.HP0752; -. DR PaxDb; P96786; -. DR EnsemblBacteria; AAD07800; AAD07800; HP_0752. DR GeneID; 900004; -. DR KEGG; hpy:HP0752; -. DR PATRIC; 20592793; VBIHelPyl33062_0785. DR eggNOG; ENOG4107W9T; Bacteria. DR eggNOG; COG1345; LUCA. DR KO; K02407; -. DR OMA; IMAERFA; -. DR OrthoDB; EOG6GN6X6; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009288; C:bacterial-type flagellum; IMP:CACAO. DR GO; GO:0009424; C:bacterial-type flagellum hook; IEA:InterPro. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0071978; P:bacterial-type flagellum-dependent swarming motility; IMP:CACAO. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR InterPro; IPR010809; FliD_C. DR InterPro; IPR003481; FliD_N. DR Pfam; PF07195; FliD_C; 1. DR Pfam; PF02465; FliD_N; 1. PE 1: Evidence at protein level; KW Bacterial flagellum; Coiled coil; Complete proteome; KW Direct protein sequencing; Reference proteome; Secreted. FT INIT_MET 1 1 Removed. {ECO:0000269|PubMed:10559162}. FT CHAIN 2 685 Flagellar hook-associated protein 2. FT /FTId=PRO_0000177019. FT COILED 618 647 {ECO:0000255}. FT VARIANT 59 59 A -> S (in strain: KCTC 0217BP). FT VARIANT 86 86 S -> N (in strain: KCTC 0217BP). FT VARIANT 91 91 V -> A (in strain: KCTC 0217BP). FT VARIANT 193 193 V -> I (in strain: KCTC 0217BP). FT VARIANT 231 231 N -> S (in strain: KCTC 0217BP). FT VARIANT 258 258 M -> I (in strain: KCTC 0217BP). FT VARIANT 270 270 N -> D (in strain: KCTC 0217BP). FT VARIANT 363 363 I -> V (in strain: KCTC 0217BP). FT VARIANT 368 368 A -> S (in strain: KCTC 0217BP). FT VARIANT 373 373 S -> N (in strain: KCTC 0217BP). FT VARIANT 422 422 N -> G (in strain: KCTC 0217BP). FT CONFLICT 654 685 ERFAAYDSQISKANQKFNSVQMMIDQAAAKKN -> DVLPL FT MIAKSLKPIKNSIPCK (in Ref. 2; AAD07800). FT {ECO:0000305}. SQ SEQUENCE 685 AA; 74131 MW; 12D4F56473D047F6 CRC64; MAIGSLSSLG LGSKVLNYDV IDKLKDADEK ALIAPLDKKM EQNVEKQKAL VEIKTLLSAL KGPVKTLSDY STYISRKSNV TGDALSASVG VGVPIQDIKV DVQNLAQGDI NELGAKFSSR DDIFSQVDTT LKFYTQNKDY AVNIKAGMTL GDVAQSITDA TNGEVMGIVM KTGGNDPYQL MVNTKNTGED NRVYFGSHLQ STLTNKNALS LGVDGSGKSE VSLNLKGADG NMHEVPIMLE LPESASIKQK NTAIQKAMEQ ALENDPNFKN LIANGDISID TLHGGESLII NDRRGGNIEV KGSKAKELGF LQTTTQESDL LKSSRTIKEG KLEGVVSLNG QKLDLSALTK ESNTSEENTD AIIQAINAKE GLSAFKNAEG KLVINSKTGM LTIKGEDALG KASLKDLGLN AGMVQSYEAS QNTLFMSKNL QKASDSAFTY NGVSITRPTN EVNDVISGVN ITLEQTTEPN KPAIISVSRD NQAIIDSLTE FVKAYNELIP KLDEDTRYDA DTKIAGIFNG VGDIRAIRSS LNNVFSYSVH TDNGVESLMK YGLSLDDKGV MSLDEAKLSS ALNSNPKATQ DFFYGSDSKD MGGREIHQEG IFSKFNQVIA NLIDGGNAKL KIYEDSLDRD AKSLTKDKEN AQELLKTRYN IMAERFAAYD SQISKANQKF NSVQMMIDQA AAKKN // ID FLII_HELPY Reviewed; 434 AA. AC O07025; P94822; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 20-JAN-2016, entry version 122. DE RecName: Full=Flagellum-specific ATP synthase; DE EC=3.6.3.14; GN Name=fliI; OrderedLocusNames=HP_1420; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=N6; RX PubMed=9231413; DOI=10.1111/j.1574-6968.1997.tb10429.x; RA Jenks P.J., Foynes S., Ward S., Wren B.W.; RT "A flagellar-specific ATPase (FliI) is necessary for flagellar export RT in Helicobacter pylori."; RL FEMS Microbiol. Lett. 152:205-211(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Probable catalytic subunit of a protein translocase for CC flagellum-specific export, or a proton translocase involved in CC local circuits at the flagellum. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate + CC H(+)(Out). {ECO:0000255|PROSITE-ProRule:PRU10106}. CC -!- INTERACTION: CC O25120:HP_0353; NbExp=4; IntAct=EBI-957989, EBI-958087; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ATPase alpha/beta chains family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; Y08620; CAA69911.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08462.1; -; Genomic_DNA. DR PIR; D64697; D64697. DR RefSeq; NP_208211.1; NC_000915.1. DR RefSeq; WP_001128709.1; NC_018939.1. DR ProteinModelPortal; O07025; -. DR DIP; DIP-3391N; -. DR IntAct; O07025; 1. DR MINT; MINT-185321; -. DR STRING; 85962.HP1420; -. DR PaxDb; O07025; -. DR PRIDE; O07025; -. DR EnsemblBacteria; AAD08462; AAD08462; HP_1420. DR GeneID; 899875; -. DR KEGG; heo:C694_07345; -. DR KEGG; hpy:HP1420; -. DR PATRIC; 20594239; VBIHelPyl33062_1489. DR eggNOG; ENOG4108JIR; Bacteria. DR eggNOG; COG1157; LUCA. DR KO; K02412; -. DR OMA; IGAYKRG; -. DR OrthoDB; EOG6W9X53; -. DR BioCyc; HPY:HP1420-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0030257; C:type III protein secretion system complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR GO; GO:0030254; P:protein secretion by the type III secretion system; IEA:InterPro. DR GO; GO:0015992; P:proton transport; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR020003; ATPase_a/bsu_AS. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR032463; ATPase_T3SS_FliI. DR InterPro; IPR005714; ATPase_T3SS_FliI/YscN. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR15184:SF9; PTHR15184:SF9; 1. DR Pfam; PF00006; ATP-synt_ab; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01026; fliI_yscN; 1. DR PROSITE; PS00152; ATPASE_ALPHA_BETA; 1. PE 1: Evidence at protein level; KW ATP synthesis; ATP-binding; Bacterial flagellum biogenesis; KW Bacterial flagellum protein export; Complete proteome; Cytoplasm; KW Hydrogen ion transport; Hydrolase; Ion transport; Nucleotide-binding; KW Protein transport; Reference proteome; Transport. FT CHAIN 1 434 Flagellum-specific ATP synthase. FT /FTId=PRO_0000144696. FT NP_BIND 164 171 ATP. {ECO:0000255}. FT CONFLICT 15 15 D -> E (in Ref. 1; CAA69911). FT {ECO:0000305}. FT CONFLICT 115 115 A -> V (in Ref. 1; CAA69911). FT {ECO:0000305}. FT CONFLICT 140 140 I -> V (in Ref. 1; CAA69911). FT {ECO:0000305}. FT CONFLICT 323 323 T -> A (in Ref. 1; CAA69911). FT {ECO:0000305}. FT CONFLICT 367 367 C -> Y (in Ref. 1; CAA69911). FT {ECO:0000305}. FT CONFLICT 424 424 T -> Q (in Ref. 1; CAA69911). FT {ECO:0000305}. SQ SEQUENCE 434 AA; 47636 MW; 6F04D67C988B4E22 CRC64; MPLKSLKNRL NQHFDLSPRY GSVKKIMPNI VYADGFNPSV GDVVKIEKSD GSECVGMVVV AEKEQFGFTP FNFIEGARAG DKVLFLKEGL NFPVGRNLLG RVLNPLGQVI DNKGALDYER LAPVITTPIA PLKRGLIDEI FSVGVKSIDG LLTCGKGQKL GIFAGSGVGK STLMGMITRG CLAPIKVIAL IGERGREIPE FIEKNLKGDL SSCVLVVATS DDSPLMRKYG AFCAMSVAEY FKNQGLDVLF IMDSVTRFAM AQREIGLALG EPPTSKGYPP SALSLLPQLM ERAGKEENKG SITAFFSVLV EGDDLSDPIA DQTRSILDGH IVLSRELTDY GIYPPINILN SASRVAKDII SESQNLCARK FRRLYALLKE NEMLIRIGSY QMGNDKELDE AIKKKALMEQ FLAQDENALQ PFETSFQQLE EILR // ID FMT_HELPY Reviewed; 303 AA. AC P56461; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE RecName: Full=Methionyl-tRNA formyltransferase; DE EC=2.1.2.9; GN Name=fmt; OrderedLocusNames=HP_1141; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Modifies the free amino group of the aminoacyl moiety of CC methionyl-tRNA(fMet). The formyl group appears to play a dual role CC in the initiator identity of N-formylmethionyl-tRNA by: (I) CC promoting its recognition by IF2 and (II) impairing its binding to CC EFTu-GTP (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 10-formyltetrahydrofolate + L-methionyl- CC tRNA(fMet) = tetrahydrofolate + N-formylmethionyl-tRNA(fMet). CC -!- SIMILARITY: Belongs to the Fmt family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08187.1; -; Genomic_DNA. DR PIR; E64662; E64662. DR RefSeq; NP_207932.1; NC_000915.1. DR RefSeq; WP_001223483.1; NC_018939.1. DR ProteinModelPortal; P56461; -. DR IntAct; P56461; 1. DR STRING; 85962.HP1141; -. DR PaxDb; P56461; -. DR PRIDE; P56461; -. DR EnsemblBacteria; AAD08187; AAD08187; HP_1141. DR GeneID; 899678; -. DR KEGG; heo:C694_05885; -. DR KEGG; hpy:HP1141; -. DR PATRIC; 20593627; VBIHelPyl33062_1193. DR eggNOG; ENOG4105CAE; Bacteria. DR eggNOG; COG0223; LUCA. DR KO; K00604; -. DR OMA; ALYPRAF; -. DR OrthoDB; EOG6B09WV; -. DR BioCyc; HPY:HP1141-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004479; F:methionyl-tRNA formyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.25.10; -; 1. DR Gene3D; 3.40.50.170; -; 1. DR HAMAP; MF_00182; Formyl_trans; 1. DR InterPro; IPR005794; Fmt. DR InterPro; IPR005793; Formyl_trans_C. DR InterPro; IPR002376; Formyl_transf_N. DR InterPro; IPR011034; Formyl_transferase_C-like. DR Pfam; PF02911; Formyl_trans_C; 1. DR Pfam; PF00551; Formyl_trans_N; 1. DR SUPFAM; SSF50486; SSF50486; 1. DR SUPFAM; SSF53328; SSF53328; 1. DR TIGRFAMs; TIGR00460; fmt; 1. PE 3: Inferred from homology; KW Complete proteome; Protein biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 303 Methionyl-tRNA formyltransferase. FT /FTId=PRO_0000082974. FT REGION 109 112 Tetrahydrofolate (THF) binding. FT {ECO:0000250}. SQ SEQUENCE 303 AA; 33730 MW; D74728EF64731124 CRC64; MRIVFMGTPG FAEVILRALV GDKDIEVVGL FTQMDKPFGR KKELKAPETK TYILENHLNI PIFQPQSLKE PEVQILKDLK PNFIVVVAYG KILPKEVLTI APCINLHASL LPKYRGASPI HEMILNDNKI YGISTMLMDV ELDSGDILES ASFLREDYLD LDALSLKLAH MGAALLLSTL KNFSSITRKS QDHMQASFCK KITKSDGLVG FKDAKSLFLK SLAFKSWPEI FLENGLKLLE VELVENEKSH KEGEILEIDE KGVLVGCLKG SVRIARLQAV GKKPLKAKDY LNGKRLKIGG ILA // ID FRDA_HELPY Reviewed; 714 AA. AC O06913; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 09-DEC-2015, entry version 118. DE RecName: Full=Fumarate reductase flavoprotein subunit; DE EC=1.3.5.4; GN Name=frdA; OrderedLocusNames=HP_0192; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=9434188; DOI=10.1016/S0378-1119(97)00550-7; RA Ge Z., Jiang Q., Kalisiak M.S., Taylor D.E.; RT "Cloning and functional characterization of Helicobacter pylori RT fumarate reductase operon comprising three structural genes coding for RT subunits C, A and B."; RL Gene 204:227-234(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Succinate + a quinone = fumarate + a quinol. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; Evidence={ECO:0000250}; CC Note=Binds 1 FAD covalently per subunit. {ECO:0000250}; CC -!- SUBUNIT: Part of an enzyme complex containing three subunits: a CC flavoprotein, an iron-sulfur, and cytochrome b-556. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FAD-dependent oxidoreductase 2 family. CC FRD/SDH subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U78101; AAC46064.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07259.1; -; Genomic_DNA. DR PIR; H64543; H64543. DR RefSeq; NP_206991.1; NC_000915.1. DR RefSeq; WP_000706021.1; NC_018939.1. DR ProteinModelPortal; O06913; -. DR SMR; O06913; 1-682. DR DIP; DIP-3345N; -. DR IntAct; O06913; 2. DR MINT; MINT-176861; -. DR STRING; 85962.HP0192; -. DR PaxDb; O06913; -. DR PRIDE; O06913; -. DR EnsemblBacteria; AAD07259; AAD07259; HP_0192. DR GeneID; 900116; -. DR KEGG; heo:C694_00955; -. DR KEGG; hpy:HP0192; -. DR PATRIC; 20591605; VBIHelPyl33062_0202. DR eggNOG; ENOG4105C00; Bacteria. DR eggNOG; COG1053; LUCA. DR KO; K00244; -. DR OMA; AAPSIIH; -. DR OrthoDB; EOG6RFZT2; -. DR BioCyc; HPY:HP0192-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR Gene3D; 1.20.58.100; -; 1. DR Gene3D; 3.50.50.60; -; 2. DR Gene3D; 3.90.700.10; -; 1. DR InterPro; IPR003953; FAD-binding_2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR003952; FRD_SDH_FAD_BS. DR InterPro; IPR015939; Fum_Rdtase/Succ_DH_flav-like_C. DR InterPro; IPR030664; SdhA/FrdA/AprA. DR InterPro; IPR027477; Succ_DH/fumarate_Rdtase_cat. DR Pfam; PF00890; FAD_binding_2; 1. DR Pfam; PF02910; Succ_DH_flav_C; 1. DR PIRSF; PIRSF000171; SDHA_APRA_LASPO; 1. DR SUPFAM; SSF46977; SSF46977; 1. DR SUPFAM; SSF51905; SSF51905; 3. DR SUPFAM; SSF56425; SSF56425; 2. DR PROSITE; PS00504; FRD_SDH_FAD_BINDING; 1. PE 3: Inferred from homology; KW Complete proteome; Electron transport; FAD; Flavoprotein; KW Oxidoreductase; Reference proteome; Transport. FT CHAIN 1 714 Fumarate reductase flavoprotein subunit. FT /FTId=PRO_0000158662. FT NP_BIND 9 23 FAD. {ECO:0000255}. FT ACT_SITE 257 257 {ECO:0000250}. FT ACT_SITE 273 273 {ECO:0000250}. FT MOD_RES 43 43 Tele-8alpha-FAD histidine. {ECO:0000250}. FT CONFLICT 112 112 K -> R (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 170 175 HHKVDI -> NTTKWIL (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 361 361 K -> E (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 371 373 VPA -> MPT (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 513 513 R -> K (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 615 624 MEISPDFRGY -> WKSALILGAM (in Ref. 1; FT AAC46064). {ECO:0000305}. FT CONFLICT 658 658 I -> V (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 699 699 E -> D (in Ref. 1; AAC46064). FT {ECO:0000305}. FT CONFLICT 703 703 Q -> K (in Ref. 1; AAC46064). FT {ECO:0000305}. SQ SEQUENCE 714 AA; 80121 MW; D4639213CB19B3A9 CRC64; MKITYCDALI IGGGLAGLRA SIACKQKGLN TIVLSLVPVR RSHSAAAQGG MQASLANAKK SEGDNEDLHF LDTVKGSDWG CDQQVARMFV TTAPKAIREL ASWGVPWTRI KKGDRPAVVN GEHVTITERD DRHGYILSRD FGGTKKWRTC FTADATGHTM LYAVANEALH HKVDIQDRKD MLAFIHHDNK CYGAVVRDLI TGEISAYVSK GTLLATGGYG RVYKHTTNAV ICDGAGAASA LETGVAKLGN MEAVQFHPTA LVPSGILMTE GCRGDGGVLR DKFGRRFMPA YEPEKKELAS RDVVSRRILE HIQKGYGAKS PYGDHVWLDI AILGRNHVEK NLRDVRDIAM TFAGIDPADS KEQTKDNMQG VPANEPEYGQ AMAKQKGWIP IKPMQHYSMG GVRTNPKGET HLKGLFCAGE AACWDLHGFN RLGGNSVSEA VVAGMIIGDY FASHCLEAQI EINTQKVEAF IKESQDYMHF LLHNEGKEDV YEIRERMKEV MDEKVGVFRE GKRLEEALKE LQELYARSKN ICVKNKVLHN NPELEDAYRT KKMLKLALCI TQGALLRTES RGAHTRIDYP KRDDEKWLNR TLASWPSAEQ DMPTIEYEEL DVMKMEISPD FRGYGKKGNF IPHPKKEERD AEILKTILEL EKLGKDRIEV QHALMPFELQ EKYKARNMRL EDEEVRARGE HLYSFNVHEL LDQHNANLKG EHHE // ID FOLD_HELPY Reviewed; 290 AA. AC P56467; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 09-DEC-2015, entry version 94. DE RecName: Full=Bifunctional protein FolD {ECO:0000255|HAMAP-Rule:MF_01576}; DE Includes: DE RecName: Full=Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; DE EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576}; DE Includes: DE RecName: Full=Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; DE EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576}; GN Name=folD {ECO:0000255|HAMAP-Rule:MF_01576}; GN OrderedLocusNames=HP_0577; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the oxidation of 5,10- CC methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and CC then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- CC formyltetrahydrofolate. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + NADP(+) = CC 5,10-methenyltetrahydrofolate + NADPH. {ECO:0000255|HAMAP- CC Rule:MF_01576}. CC -!- CATALYTIC ACTIVITY: 5,10-methenyltetrahydrofolate + H(2)O = 10- CC formyltetrahydrofolate. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. CC {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- SIMILARITY: Belongs to the tetrahydrofolate CC dehydrogenase/cyclohydrolase family. {ECO:0000255|HAMAP- CC Rule:MF_01576}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07644.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07644.1; ALT_INIT; Genomic_DNA. DR PIR; A64592; A64592. DR RefSeq; NP_207372.1; NC_000915.1. DR ProteinModelPortal; P56467; -. DR IntAct; P56467; 2. DR STRING; 85962.HP0577; -. DR PaxDb; P56467; -. DR EnsemblBacteria; AAD07644; AAD07644; HP_0577. DR GeneID; 900029; -. DR KEGG; heo:C694_02975; -. DR KEGG; hpy:HP0577; -. DR PATRIC; 20592427; VBIHelPyl33062_0602. DR eggNOG; ENOG4105CN0; Bacteria. DR eggNOG; COG0190; LUCA. DR KO; K01491; -. DR OMA; KYVIAPE; -. DR OrthoDB; EOG6K6VBB; -. DR UniPathway; UPA00193; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004477; F:methenyltetrahydrofolate cyclohydrolase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004488; F:methylenetetrahydrofolate dehydrogenase (NADP+) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009396; P:folic acid-containing compound biosynthetic process; IEA:InterPro. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0006164; P:purine nucleotide biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0035999; P:tetrahydrofolate interconversion; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_01576; THF_DHG_CYH; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000672; THF_DH/CycHdrlase. DR InterPro; IPR020630; THF_DH/CycHdrlase_cat_dom. DR InterPro; IPR020867; THF_DH/CycHdrlase_CS. DR InterPro; IPR020631; THF_DH/CycHdrlase_NAD-bd_dom. DR Pfam; PF00763; THF_DHG_CYH; 1. DR Pfam; PF02882; THF_DHG_CYH_C; 1. DR PRINTS; PR00085; THFDHDRGNASE. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00766; THF_DHG_CYH_1; 1. DR PROSITE; PS00767; THF_DHG_CYH_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Histidine biosynthesis; KW Hydrolase; Methionine biosynthesis; Multifunctional enzyme; NADP; KW One-carbon metabolism; Oxidoreductase; Purine biosynthesis; KW Reference proteome. FT CHAIN 1 290 Bifunctional protein FolD. FT /FTId=PRO_0000199308. FT NP_BIND 169 171 NADP. {ECO:0000255|HAMAP-Rule:MF_01576}. FT BINDING 194 194 NADP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01576}. FT BINDING 235 235 NADP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01576}. SQ SEQUENCE 290 AA; 31686 MW; 263F8C6DE9712D47 CRC64; MPNRGVVLLD GQALADNIEK DLKHKIQIIT AQTHKRPKLA VILVGKDPAS ITYVNMKIKA CERVGMDFDL KTLQENITEA KLLSLIKDYN TDQNISGVLV QLPLPRHIDT KMILEAIDPN KDVDGFHPLN IGKLCTQKES FLPATPMGVM RLLEHYHIEI KGKDVAIIGA SNIIGKPLSM LMLNAGASVS VCHILTKDIS FYTQNADIVC VGVGKPDLIK ASMLKKGAVV VDIGINHLND GRIVGDVDFN NVQKVAGFIT PVPKGVGPMT IVSLLENTLI AFEKQQRKGF // ID G6PD_HELPY Reviewed; 425 AA. AC P56110; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 103. DE RecName: Full=Glucose-6-phosphate 1-dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00966}; DE Short=G6PD {ECO:0000255|HAMAP-Rule:MF_00966}; DE EC=1.1.1.49 {ECO:0000255|HAMAP-Rule:MF_00966}; GN Name=zwf {ECO:0000255|HAMAP-Rule:MF_00966}; OrderedLocusNames=HP_1101; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the oxidation of glucose 6-phosphate to 6- CC phosphogluconolactone. {ECO:0000255|HAMAP-Rule:MF_00966}. CC -!- CATALYTIC ACTIVITY: D-glucose 6-phosphate + NADP(+) = 6-phospho-D- CC glucono-1,5-lactone + NADPH. {ECO:0000255|HAMAP-Rule:MF_00966}. CC -!- PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D- CC ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): CC step 1/3. {ECO:0000255|HAMAP-Rule:MF_00966}. CC -!- SIMILARITY: Belongs to the glucose-6-phosphate dehydrogenase CC family. {ECO:0000255|HAMAP-Rule:MF_00966}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08144.1; -; Genomic_DNA. DR PIR; E64657; E64657. DR RefSeq; NP_207892.1; NC_000915.1. DR RefSeq; WP_000883625.1; NC_018939.1. DR ProteinModelPortal; P56110; -. DR STRING; 85962.HP1101; -. DR PaxDb; P56110; -. DR PRIDE; P56110; -. DR EnsemblBacteria; AAD08144; AAD08144; HP_1101. DR GeneID; 899637; -. DR KEGG; heo:C694_05680; -. DR KEGG; hpy:HP1101; -. DR PATRIC; 20593541; VBIHelPyl33062_1150. DR eggNOG; ENOG4105D8W; Bacteria. DR eggNOG; COG0364; LUCA. DR KO; K00036; -. DR OMA; NIPTVMI; -. DR OrthoDB; EOG61308Z; -. DR BioCyc; HPY:HP1101-MONOMER; -. DR UniPathway; UPA00115; UER00408. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004345; F:glucose-6-phosphate dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006006; P:glucose metabolic process; IEA:UniProtKB-KW. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00966; G6PD; 1. DR InterPro; IPR001282; G6P_DH. DR InterPro; IPR019796; G6P_DH_AS. DR InterPro; IPR022675; G6P_DH_C. DR InterPro; IPR022674; G6P_DH_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR23429; PTHR23429; 1. DR Pfam; PF02781; G6PD_C; 1. DR Pfam; PF00479; G6PD_N; 1. DR PRINTS; PR00079; G6PDHDRGNASE. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00069; G6P_DEHYDROGENASE; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism; Complete proteome; Glucose metabolism; NADP; KW Oxidoreductase; Reference proteome. FT CHAIN 1 425 Glucose-6-phosphate 1-dehydrogenase. FT /FTId=PRO_0000068123. FT ACT_SITE 225 225 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00966}. FT BINDING 44 44 NADP. {ECO:0000255|HAMAP-Rule:MF_00966}. FT BINDING 135 135 NADP. {ECO:0000255|HAMAP-Rule:MF_00966}. FT BINDING 165 165 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00966}. FT BINDING 169 169 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00966}. FT BINDING 201 201 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00966}. FT BINDING 220 220 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00966}. FT BINDING 311 311 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00966}. SQ SEQUENCE 425 AA; 49541 MW; EF5A5C1C5AC7B6DB CRC64; MLDFDLVLFG ATGDLAMRKL FVSLYEIYTH YGFKNDSRII ASGRKELSNE EFLTLLCEKT QLHSREKGRE FLAHISYLCV RLDNPKDFEE LSKIATKNKP LIFYFSISPS FFATTAQHLA KNALNHANTR LILEKPLGHD LKTCKEIFQS ISVFFKEEQI FRIDHYLGKK GVQNILELRL NNPILNILWD QISAVEICVY ETLGVEERGE FYDKIGALRD MVQNHLLQVL SLIATDLPNN LKDLRKEKIK VLKTLQPPKD FKKQVIRAQY QGYRDENKVH KESQTETFVA IKAFLDTPKF KGVPFYLKHA KKMPHNQASV KIHFNAVNTL EFFLSQDKIT LTLKDHQNPL ILETHNKQEF LRPYAKLLYD AIQNNHNNFA HQLELEASWV FIDTLIEGFM NNATPLYSYE SHHLNESEFL KPLYQ // ID FLHF_HELPY Reviewed; 459 AA. AC O25679; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 94. DE RecName: Full=Flagellar biosynthesis protein FlhF; DE AltName: Full=Flagella-associated GTP-binding protein; GN Name=flhF; OrderedLocusNames=HP_1035; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Necessary for flagellar biosynthesis. May be involved in CC translocation of the flagellum (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Peripheral CC membrane protein {ECO:0000250}; Cytoplasmic side {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GTP-binding SRP family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08078.1; -; Genomic_DNA. DR PIR; C64649; C64649. DR RefSeq; NP_207825.1; NC_000915.1. DR RefSeq; WP_000238399.1; NC_000915.1. DR ProteinModelPortal; O25679; -. DR DIP; DIP-3259N; -. DR IntAct; O25679; 8. DR MINT; MINT-179903; -. DR STRING; 85962.HP1035; -. DR PaxDb; O25679; -. DR PRIDE; O25679; -. DR EnsemblBacteria; AAD08078; AAD08078; HP_1035. DR GeneID; 899570; -. DR KEGG; hpy:HP1035; -. DR PATRIC; 20593407; VBIHelPyl33062_1084. DR eggNOG; ENOG4105FZW; Bacteria. DR eggNOG; COG1419; LUCA. DR KO; K02404; -. DR OMA; VNIPQEF; -. DR OrthoDB; EOG618QQ6; -. DR BioCyc; HPY:HP1035-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:UniProtKB-KW. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR020006; FlhF. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000897; SRP54_GTPase_dom. DR PANTHER; PTHR11564:SF3; PTHR11564:SF3; 1. DR Pfam; PF00448; SRP54; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00962; SRP54; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR03499; FlhF; 1. PE 3: Inferred from homology; KW Bacterial flagellum biogenesis; Bacterial flagellum protein export; KW Cell membrane; Complete proteome; GTP-binding; Membrane; KW Nucleotide-binding; Protein transport; Reference proteome; Transport. FT CHAIN 1 459 Flagellar biosynthesis protein FlhF. FT /FTId=PRO_0000101223. FT NP_BIND 263 270 GTP. {ECO:0000250}. FT NP_BIND 342 346 GTP. {ECO:0000250}. FT NP_BIND 400 403 GTP. {ECO:0000250}. SQ SEQUENCE 459 AA; 52302 MW; 4C6B513BCC43E815 CRC64; MVKFYTYSGE TAAEALKIAQ SHHGVDTLVF KTQEIRKKTL TSSGLYEIVV AVEEESENKP SKAPLIPESL YDEELNEEDV VMQLSSTVEE MRKLAGVSSS QRHYSFSKNK TLLEKDAPLE DAPLEANKQD ALLQALKDEA NHKKEREKRE VKQEEEIKDI NLQLSKIRDS LKLIQNMFWD EKNPNSINIP QEFAEIYKLA KQSGMKPSHL DEIMQLSLEL MPLRMRENSV TIKRYFREVL RKMILCCPED LNLRQKRILM LVGPTGVGKT TTLAKLAARY SRMLAKKYKV GIITLDNYRI GALEQLSWYA NKMKMSIEAV IDAKDFAKEI EALEYCDFIL VDTTGHSQYD KEKIAGLKEF IDGGYNIDVS LVLSVTTKYE DMKDIYDSFG VLGIDTLIFT KLDESRGLGN LFSLVHESQK PISYLSVGQE VPMDLKVATN EYLVDCMLDG FSNPNKEQA // ID FTN_HELPY Reviewed; 167 AA. AC P52093; DT 01-OCT-1996, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 110. DE RecName: Full=Bacterial non-heme ferritin; DE EC=1.16.3.2; GN Name=ftnA; Synonyms=pfr; OrderedLocusNames=HP_0653; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 1-25. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8432720; RA Frazier B.A., Pfeifer J.D., Russell D.G., Falk P., Olsen A.N., RA Hammar M., Westblom T.U., Normark S.J.; RT "Paracrystalline inclusions of a novel ferritin containing nonheme RT iron, produced by the human gastric pathogen Helicobacter pylori: RT evidence for a third class of ferritins."; RL J. Bacteriol. 175:966-972(1993). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP PROTEIN SEQUENCE OF 1-28. RC STRAIN=5294, ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487, and RC CCUG 915; RX PubMed=1556073; RA Doig P., Austin J.W., Kostrzynska M., Trust T.J.; RT "Production of a conserved adhesin by the human gastroduodenal RT pathogen Helicobacter pylori."; RL J. Bacteriol. 174:2539-2547(1992). RN [4] RP CHARACTERIZATION AS A FERRITIN, AND SUBCELLULAR LOCATION. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=8419304; RA Doig P., Austin J.W., Trust T.J.; RT "The Helicobacter pylori 19.6-kilodalton protein is an iron-containing RT protein resembling ferritin."; RL J. Bacteriol. 175:557-560(1993). CC -!- FUNCTION: Iron-storage protein. CC -!- CATALYTIC ACTIVITY: 4 Fe(2+) + O(2) + 6 H(2)O = 4 (FeO(OH)) + 8 CC H(+). CC -!- SUBUNIT: Homooligomer of 24 subunits that assemble into a CC spherical protein shell (12 +/- 1 nM diameter) that can sequester CC at least 2000 iron atoms. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:8419304}. CC -!- MISCELLANEOUS: Was originally thought to be an adhesin. CC {ECO:0000305|PubMed:1556073}. CC -!- MISCELLANEOUS: In PubMed:1556073 only the sequence of residues 1- CC 12 of strain 5294 was determined. CC -!- SIMILARITY: Belongs to the ferritin family. Prokaryotic subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 ferritin-like diiron domain. CC {ECO:0000255|PROSITE-ProRule:PRU00085}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; S54729; AAB25329.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07712.1; -; Genomic_DNA. DR PIR; A49694; A49694. DR RefSeq; NP_207447.1; NC_000915.1. DR RefSeq; WP_000949202.1; NC_018939.1. DR ProteinModelPortal; P52093; -. DR SMR; P52093; 1-164. DR DIP; DIP-3470N; -. DR IntAct; P52093; 6. DR MINT; MINT-167098; -. DR STRING; 85962.HP0653; -. DR PaxDb; P52093; -. DR PRIDE; P52093; -. DR EnsemblBacteria; AAD07712; AAD07712; HP_0653. DR GeneID; 899994; -. DR KEGG; heo:C694_03375; -. DR KEGG; hpy:HP0653; -. DR PATRIC; 20592591; VBIHelPyl33062_0684. DR eggNOG; ENOG41090A1; Bacteria. DR eggNOG; COG1528; LUCA. DR KO; K02217; -. DR OMA; CEDKGFE; -. DR OrthoDB; EOG6G4W12; -. DR BioCyc; HPY:HP0653-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008199; F:ferric iron binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0006879; P:cellular iron ion homeostasis; IEA:UniProtKB-KW. DR GO; GO:0006826; P:iron ion transport; IEA:InterPro. DR Gene3D; 1.20.1260.10; -; 1. DR InterPro; IPR001519; Ferritin. DR InterPro; IPR009040; Ferritin-like_diiron. DR InterPro; IPR009078; Ferritin-like_SF. DR InterPro; IPR012347; Ferritin-rel. DR InterPro; IPR008331; Ferritin_DPS_dom. DR PANTHER; PTHR11431; PTHR11431; 1. DR Pfam; PF00210; Ferritin; 1. DR SUPFAM; SSF47240; SSF47240; 1. DR PROSITE; PS50905; FERRITIN_LIKE; 1. PE 1: Evidence at protein level; KW Complete proteome; Cytoplasm; Direct protein sequencing; Iron; KW Iron storage; Metal-binding; Oxidoreductase; Reference proteome. FT CHAIN 1 167 Bacterial non-heme ferritin. FT /FTId=PRO_0000201096. FT DOMAIN 1 145 Ferritin-like diiron. FT {ECO:0000255|PROSITE-ProRule:PRU00085}. FT METAL 17 17 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT METAL 50 50 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT METAL 50 50 Iron 2. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT METAL 53 53 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT METAL 94 94 Iron 2. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT METAL 127 127 Iron 2. {ECO:0000255|PROSITE- FT ProRule:PRU00085}. FT CONFLICT 39 39 A -> S (in Ref. 1; AAB25329). FT {ECO:0000305}. SQ SEQUENCE 167 AA; 19286 MW; 2829A4EC2AE616D4 CRC64; MLSKDIIKLL NEQVNKEMNS SNLYMSMSSW CYTHSLDGAG LFLFDHAAEE YEHAKKLIVF LNENNVPVQL TSISAPEHKF EGLTQIFQKA YEHEQHISES INNIVDHAIK GKDHATFNFL QWYVSEQHEE EVLFKDILDK IELIGNENHG LYLADQYVKG IAKSRKS // ID FTSA_HELPY Reviewed; 492 AA. AC O25629; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 82. DE RecName: Full=Cell division protein FtsA {ECO:0000255|HAMAP-Rule:MF_02033}; GN Name=ftsA {ECO:0000255|HAMAP-Rule:MF_02033}; GN OrderedLocusNames=HP_0978; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell division protein that is involved in the assembly CC of the Z ring. May serve as a membrane anchor for the Z ring. CC {ECO:0000255|HAMAP-Rule:MF_02033}. CC -!- SUBUNIT: Self-interacts. Interacts with FtsZ. {ECO:0000255|HAMAP- CC Rule:MF_02033}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_02033}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_02033}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_02033}. Note=Localizes to the Z ring in an FtsZ-dependent CC manner. Targeted to the membrane through a conserved C-terminal CC amphiphatic helix. {ECO:0000255|HAMAP-Rule:MF_02033}. CC -!- SIMILARITY: Belongs to the FtsA/MreB family. {ECO:0000255|HAMAP- CC Rule:MF_02033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08024.1; -; Genomic_DNA. DR PIR; B64642; B64642. DR RefSeq; NP_207769.1; NC_000915.1. DR RefSeq; WP_000400290.1; NC_018939.1. DR ProteinModelPortal; O25629; -. DR DIP; DIP-3124N; -. DR IntAct; O25629; 8. DR MINT; MINT-163208; -. DR STRING; 85962.HP0978; -. DR PaxDb; O25629; -. DR PRIDE; O25629; -. DR DNASU; 899510; -. DR EnsemblBacteria; AAD08024; AAD08024; HP_0978. DR GeneID; 899510; -. DR KEGG; heo:C694_05035; -. DR KEGG; hpy:HP0978; -. DR PATRIC; 20593271; VBIHelPyl33062_1017. DR eggNOG; ENOG4105CIT; Bacteria. DR eggNOG; COG0849; LUCA. DR KO; K03590; -. DR OMA; AKIPRIN; -. DR OrthoDB; EOG6TR0B6; -. DR BioCyc; HPY:HP0978-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0032153; C:cell division site; IEA:UniProtKB-HAMAP. DR GO; GO:0009898; C:cytoplasmic side of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0043093; P:FtsZ-dependent cytokinesis; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR HAMAP; MF_02033; FtsA; 1. DR InterPro; IPR020823; Cell_div_FtsA. DR InterPro; IPR003494; SHS2_FtsA. DR Pfam; PF02491; SHS2_FTSA; 1. DR SMART; SM00842; FtsA; 1. DR TIGRFAMs; TIGR01174; ftsA; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell inner membrane; Cell membrane; KW Cell shape; Complete proteome; Membrane; Reference proteome. FT CHAIN 1 492 Cell division protein FtsA. FT /FTId=PRO_0000062740. SQ SEQUENCE 492 AA; 54493 MW; FA237B467BE39B4A CRC64; MEHKEIVIGV DLGSRKICAI VAEFKEGILR IIGTAHQDSK EINSKAIKRG RINSLAHASN AIKEVINSAK KMAGLNADED RNNPMPHFGE YHPKTKAIVS FSGAYTESIR DVTGVASTKD NVVTIDEINR AINSACAKAG LDNDKHILHA LPYRFTLDKQ EVNDPLGMSG TRLEVFIHIV YTEKNNIENL EKIMIQSGVE IENIVINSYA ASIATLSNDE RELGVACVDM GGETCNLTIY SGNSIRYNKY LPVGSHHLTT DLSHMLNTPF PYAEEVKIKY GDLSFEGGEE TPSQNVQIPT TGSDGHESHI VPLSEIQTIM RERALETFKI IHRSIQDSGL EEHLGGGVVL TGGMALMKGI KELARTHFTN YPVRLAAPVE KYNIMGMFED LKDPRFSVVV GLILYKAGGH TNYERDSKGV IRYHESDDYT RTAHQSSPTP HIHSSPTERN LSDLKAPSAP LNTAKNDDFL PIKPTEQKGF FKSFLDKISK FF // ID FTSK_HELPY Reviewed; 858 AA. AC O25722; DT 29-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 87. DE RecName: Full=DNA translocase FtsK; GN Name=ftsK; OrderedLocusNames=HP_1090; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Essential cell division protein that coordinates cell CC division and chromosome segregation. The N-terminus is involved in CC assembly of the cell-division machinery. The C-terminus functions CC as a DNA motor that moves dsDNA in an ATP-dependent manner towards CC the dif recombination site, which is located within the CC replication terminus region. Translocation stops specifically at CC Xer-dif sites, where FtsK interacts with the Xer recombinase, CC allowing activation of chromosome unlinking by recombination. FtsK CC orienting polar sequences (KOPS) guide the direction of DNA CC translocation. FtsK can remove proteins from DNA as it CC translocates, but translocation stops specifically at XerCD-dif CC site, thereby preventing removal of XerC and XerD from dif (By CC similarity). {ECO:0000250}. CC -!- SUBUNIT: Homohexamer. Forms a ring that surrounds DNA (By CC similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. Note=Located at the septum. CC {ECO:0000250}. CC -!- DOMAIN: Consists of an N-terminal domain, which is sufficient for CC the localization to the septal ring and is required for cell CC division, followed by a linker domain, and a C-terminal domain, CC which forms the translocation motor involved in chromosome CC segregation. The C-terminal domain can be further subdivided into CC alpha, beta and gamma subdomains. The alpha and beta subdomains CC multimerise to produce a hexameric ring, contain the nucleotide CC binding motif and form the DNA pump. The gamma subdomain is a CC regulatory subdomain that controls translocation of DNA by CC recognition of KOPS motifs and interacts with XerD recombinase (By CC similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FtsK/SpoIIIE/SftA family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 FtsK domain. {ECO:0000255|PROSITE- CC ProRule:PRU00289}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08132.1; -; Genomic_DNA. DR PIR; B64656; B64656. DR RefSeq; NP_207881.1; NC_000915.1. DR RefSeq; WP_010875590.1; NC_000915.1. DR ProteinModelPortal; O25722; -. DR STRING; 85962.HP1090; -. DR PaxDb; O25722; -. DR PRIDE; O25722; -. DR EnsemblBacteria; AAD08132; AAD08132; HP_1090. DR GeneID; 899626; -. DR KEGG; hpy:HP1090; -. DR PATRIC; 20593519; VBIHelPyl33062_1139. DR eggNOG; ENOG4105CNU; Bacteria. DR eggNOG; COG1674; LUCA. DR KO; K03466; -. DR OMA; CAESIRI; -. DR OrthoDB; EOG6S52GD; -. DR BioCyc; HPY:HP1090-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002543; FtsK_dom. DR InterPro; IPR018541; Ftsk_gamma. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF09397; Ftsk_gamma; 1. DR Pfam; PF01580; FtsK_SpoIIIE; 1. DR SMART; SM00843; Ftsk_gamma; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50901; FTSK; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Cell inner membrane; KW Cell membrane; Chromosome partition; Complete proteome; DNA-binding; KW Membrane; Nucleotide-binding; Reference proteome; Transmembrane; KW Transmembrane helix. FT CHAIN 1 858 DNA translocase FtsK. FT /FTId=PRO_0000098262. FT TRANSMEM 9 29 Helical. {ECO:0000255}. FT TRANSMEM 48 68 Helical. {ECO:0000255}. FT TRANSMEM 74 94 Helical. {ECO:0000255}. FT TRANSMEM 116 136 Helical. {ECO:0000255}. FT TOPO_DOM 137 858 Cytoplasmic. {ECO:0000255}. FT DOMAIN 532 722 FtsK. {ECO:0000255|PROSITE- FT ProRule:PRU00289}. FT NP_BIND 552 557 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00289}. SQ SEQUENCE 858 AA; 96445 MW; 273C6384DB36B377 CRC64; MQPMKSKKLY LALIIGVLLA FLTLSSWLGN SGLVGRFGVW FAALNKKYFG HLSFINLPYL AWVLFLLYKT KNPFTEIVLE KTLGHLLGIL SLLFLQSSLL NQGEIGNSAR LFLRPFIGDF GLYALITLMV VISYLILFKL PPKSVFYPYM NKTQNLLKEI YKQCLQAFSP NFSPKKEGFE NTPSDIQKKE TKNDKEKENR KENPINENHK TPNEEPFLAI PTPYNTTLND SEPQEGLVQI SSHPPTHYTI YPKRNRFDDL TNPTNPPLKE IKQETKEREP TPTKETLTPT TPKPIMPTLA PIIENDNKTE NQKTPNHPKK EENPQENTQE EMIEGRIEEM IKENLKKEEK EVQNAPNFSP VTPTSAKKPV MVKELSENKE ILDGLDYGEV QKPKDYELPT TQLLNAVCLK DTSLDENEID QKIQDLLSKL RTFKIDGDII RTYSGPIVTT FEFRPAPNVK VSRILGLSDD LAMTLCAESI RIQAPIKGKD VVGIEIPNSQ SQIIYLREIL ESELFQKSSS PLTLALGKDI VGNPFITDLK KLPHLLIAGT TGSGKSVGVN AMILSLLYKN PPDQLKLVMI DPKMVEFSIY ADIPHLLTPI ITDPKKAIGA LQSVAKEMER RYSLMSEYKV KTIDSYNEQA PSNGVEAFPY LIVVIDELAD LMMTGGKEAE FPIARIAQMG RASGLHLIVA TQRPSVDVVT GLIKTNLPSR VSFRVGTKID SKVILDTDGA QSLLGRGDML FTPPGANGLV RLHAPFATED EIKKIVDFIK AQKEVQYDKD FLLEESRMPL DTPNYQGDDI LERAKAVILE KKITSTSFLQ RQLKIGYNQA ATITDELEAQ GFLSPRNAKG NREILQNF // ID FRDC_HELPY Reviewed; 255 AA. AC O06912; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 110. DE RecName: Full=Fumarate reductase cytochrome b subunit; GN Name=frdC; OrderedLocusNames=HP_0193; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=9434188; DOI=10.1016/S0378-1119(97)00550-7; RA Ge Z., Jiang Q., Kalisiak M.S., Taylor D.E.; RT "Cloning and functional characterization of Helicobacter pylori RT fumarate reductase operon comprising three structural genes coding for RT subunits C, A and B."; RL Gene 204:227-234(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Di-heme cytochrome of the fumarate reductase complex. CC {ECO:0000250}. CC -!- SUBUNIT: Part of an enzyme complex containing three subunits: a CC flavoprotein, an iron-sulfur, and cytochrome b-556. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass CC membrane protein {ECO:0000250}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U78101; AAC46063.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07260.1; -; Genomic_DNA. DR PIR; A64544; A64544. DR RefSeq; NP_206992.1; NC_000915.1. DR RefSeq; WP_001183634.1; NC_018939.1. DR ProteinModelPortal; O06912; -. DR SMR; O06912; 1-240. DR STRING; 85962.HP0193; -. DR PaxDb; O06912; -. DR PRIDE; O06912; -. DR EnsemblBacteria; AAD07260; AAD07260; HP_0193. DR GeneID; 898966; -. DR KEGG; heo:C694_00960; -. DR KEGG; hpy:HP0193; -. DR PATRIC; 20591607; VBIHelPyl33062_0203. DR eggNOG; ENOG4108S24; Bacteria. DR eggNOG; COG2009; LUCA. DR KO; K00246; -. DR OMA; LLAHLHF; -. DR OrthoDB; EOG6JHRMF; -. DR BioCyc; HPY:HP0193-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016627; F:oxidoreductase activity, acting on the CH-CH group of donors; IEA:InterPro. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. DR InterPro; IPR004224; Fum_red_TM. DR InterPro; IPR000701; Succ_DH_Fumarate_Rdtase_TM-su. DR Pfam; PF01127; Sdh_cyt; 1. DR PIRSF; PIRSF000177; Fumar_rd_cyt_b; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Electron transport; Heme; Iron; KW Membrane; Metal-binding; Reference proteome; Transmembrane; KW Transmembrane helix; Transport; Tricarboxylic acid cycle. FT CHAIN 1 255 Fumarate reductase cytochrome b subunit. FT /FTId=PRO_0000158683. FT TRANSMEM 33 53 Helical. {ECO:0000255}. FT TRANSMEM 78 98 Helical. {ECO:0000255}. FT TRANSMEM 126 146 Helical. {ECO:0000255}. FT TRANSMEM 168 188 Helical. {ECO:0000255}. FT TRANSMEM 208 228 Helical. {ECO:0000255}. FT METAL 44 44 Iron (heme axial ligand). {ECO:0000255}. FT METAL 93 93 Iron (heme axial ligand). {ECO:0000255}. FT METAL 143 143 Iron (heme axial ligand). {ECO:0000255}. FT METAL 182 182 Iron (heme axial ligand). {ECO:0000255}. FT CONFLICT 86 86 I -> V (in Ref. 1; AAC46063). FT {ECO:0000305}. FT CONFLICT 90 90 L -> V (in Ref. 1; AAC46063). FT {ECO:0000305}. FT CONFLICT 200 200 V -> A (in Ref. 1; AAC46063). FT {ECO:0000305}. FT CONFLICT 236 236 E -> D (in Ref. 1; AAC46063). FT {ECO:0000305}. SQ SEQUENCE 255 AA; 28886 MW; E74716D64957AD50 CRC64; MQQEEIIEGY YGASKGLKKS GIYAKLDFLQ SATGLILALF MIAHMFLVSS ILISDEAMYK VAKFFEGSLF LKAGEPAIVS VVAAGIILIL VAHAFLALRK FPINYRQYKV FKTHKHLMKH GDTSLWFIQA LTGFAMFFLA SIHLFVMLTE PESIGPHGSS YRFVTQNFWL LYIFLLFAVE LHGSIGLYRL AIKWGWFKNV SIQGLRKVKW AMSVFFIVLG LCTYGAYIKK GLENKENGIK TMQEAIEADG KFHKE // ID FTSY_HELPY Reviewed; 293 AA. AC O25458; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 109. DE RecName: Full=Signal recognition particle receptor FtsY {ECO:0000255|HAMAP-Rule:MF_00920}; DE Short=SRP receptor {ECO:0000255|HAMAP-Rule:MF_00920}; GN Name=ftsY {ECO:0000255|HAMAP-Rule:MF_00920}; GN OrderedLocusNames=HP_0763; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in targeting and insertion of nascent membrane CC proteins into the cytoplasmic membrane. Acts as a receptor for the CC complex formed by the signal recognition particle (SRP) and the CC ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to CC the transfer of the RNC complex to the Sec translocase for CC insertion into the membrane, the hydrolysis of GTP by both Ffh and CC FtsY, and the dissociation of the SRP-FtsY complex into the CC individual components. {ECO:0000255|HAMAP-Rule:MF_00920}. CC -!- SUBUNIT: Part of the signal recognition particle protein CC translocation system, which is composed of SRP and FtsY. SRP is a CC ribonucleoprotein composed of Ffh and a 4.5S RNA molecule. CC {ECO:0000255|HAMAP-Rule:MF_00920}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Peripheral membrane CC protein; Cytoplasmic side. Cytoplasm {ECO:0000255|HAMAP- CC Rule:MF_00920}. CC -!- SIMILARITY: Belongs to the GTP-binding SRP family. FtsY subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00920}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07809.1; -; Genomic_DNA. DR PIR; C64615; C64615. DR RefSeq; NP_207556.1; NC_000915.1. DR RefSeq; WP_000481557.1; NC_018939.1. DR ProteinModelPortal; O25458; -. DR STRING; 85962.HP0763; -. DR PaxDb; O25458; -. DR PRIDE; O25458; -. DR EnsemblBacteria; AAD07809; AAD07809; HP_0763. DR GeneID; 898867; -. DR KEGG; heo:C694_03925; -. DR KEGG; hpy:HP0763; -. DR PATRIC; 20592817; VBIHelPyl33062_0797. DR eggNOG; ENOG4105CCP; Bacteria. DR eggNOG; COG0552; LUCA. DR KO; K03110; -. DR OMA; KHLGDLI; -. DR OrthoDB; EOG62K1ZH; -. DR BioCyc; HPY:HP0763-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0031226; C:intrinsic component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00920; FtsY; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004390; SR_rcpt_FtsY. DR InterPro; IPR000897; SRP54_GTPase_dom. DR Pfam; PF00448; SRP54; 1. DR SMART; SM00962; SRP54; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00064; ftsY; 1. DR PROSITE; PS00300; SRP54; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Cytoplasm; KW GTP-binding; Membrane; Nucleotide-binding; Receptor; KW Reference proteome. FT CHAIN 1 293 Signal recognition particle receptor FT FtsY. FT /FTId=PRO_0000101133. FT NP_BIND 93 100 GTP. {ECO:0000255|HAMAP-Rule:MF_00920}. FT NP_BIND 175 179 GTP. {ECO:0000255|HAMAP-Rule:MF_00920}. FT NP_BIND 239 242 GTP. {ECO:0000255|HAMAP-Rule:MF_00920}. SQ SEQUENCE 293 AA; 32497 MW; 0F01D68AD73F14FE CRC64; MFNFFKKIVN KIKGEEAKEK KRQSVPKEEL EEILIGFDIQ YDLIESLLKH LGDLITPKQL EVALLRFVRG DSYYDKTRLK TITTKPLVHL IVGVNGAGKT TTIAKLAKLS LKQHKKALLG AGDTFRAAAV KQLQLWGEKL NIQVISAKEG SDPSSLAYNT IESAIAKNID EVFIDTAGRL HNQTNLKNEL SKIARTCSKV LKDAPFYKFL ILDGTQGSSG LTQAKIFHET LALDGVIMTK LDGTSKGGAI LSVLYELKLP ILYLGMGEKE DDLIAFDEER FIEDLVDAVF VGQ // ID G6PI_HELPY Reviewed; 545 AA. AC O25781; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Glucose-6-phosphate isomerase; DE Short=GPI; DE EC=5.3.1.9; DE AltName: Full=Phosphoglucose isomerase; DE Short=PGI; DE AltName: Full=Phosphohexose isomerase; DE Short=PHI; GN Name=pgi; OrderedLocusNames=HP_1166; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: D-glucose 6-phosphate = D-fructose 6- CC phosphate. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3- CC phosphate and glycerone phosphate from D-glucose: step 2/4. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GPI family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08211.1; -; Genomic_DNA. DR PIR; F64665; F64665. DR RefSeq; NP_207957.1; NC_000915.1. DR RefSeq; WP_000957646.1; NC_018939.1. DR ProteinModelPortal; O25781; -. DR SMR; O25781; 2-542. DR STRING; 85962.HP1166; -. DR PaxDb; O25781; -. DR PRIDE; O25781; -. DR EnsemblBacteria; AAD08211; AAD08211; HP_1166. DR GeneID; 899926; -. DR KEGG; heo:C694_06020; -. DR KEGG; hpy:HP1166; -. DR PATRIC; 20593683; VBIHelPyl33062_1220. DR eggNOG; ENOG4107QP8; Bacteria. DR eggNOG; COG0166; LUCA. DR KO; K01810; -. DR OMA; SHLIAPY; -. DR OrthoDB; EOG64R61J; -. DR BioCyc; HPY:HP1166-MONOMER; -. DR UniPathway; UPA00109; UER00181. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004347; F:glucose-6-phosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1390.10; -; 1. DR HAMAP; MF_00473; G6P_isomerase; 1. DR InterPro; IPR001672; G6P_Isomerase. DR InterPro; IPR023096; G6P_Isomerase_C. DR InterPro; IPR018189; Phosphoglucose_isomerase_CS. DR PANTHER; PTHR11469; PTHR11469; 1. DR Pfam; PF00342; PGI; 1. DR PRINTS; PR00662; G6PISOMERASE. DR PROSITE; PS00765; P_GLUCOSE_ISOMERASE_1; 1. DR PROSITE; PS00174; P_GLUCOSE_ISOMERASE_2; 1. DR PROSITE; PS51463; P_GLUCOSE_ISOMERASE_3; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Gluconeogenesis; Glycolysis; Isomerase; KW Reference proteome. FT CHAIN 1 545 Glucose-6-phosphate isomerase. FT /FTId=PRO_0000180652. FT ACT_SITE 351 351 Proton donor. {ECO:0000250}. FT ACT_SITE 382 382 {ECO:0000250}. FT ACT_SITE 510 510 {ECO:0000250}. SQ SEQUENCE 545 AA; 62487 MW; BDC68D1625190236 CRC64; MLTQLKTYPK LLKHYEEIKE VHMRDWFFKD KERASRYFLQ FESLSLDYSK NRLNDTTLKL LFELANDCSL KEKIEAMFKG EKINTTEKRA VLHTALRSLN DTEILLDNME VLKSIRSVLK RMRAFSDSVR SGKRLGYTNQ VITDIVNIGI GGSDLGALMV CTALKRYAHP RLKMHFVSNV DGTQILDVLE KLNPASTLFI VASKTFSTQE TLTNALTARK WFVERSGDEK HIAKHFVAVS TNKEAVQQFG IDEHNMFEFW DFVGGRYSLW SAIGLSIMIY LGKKNFNALL KGAYLMDEHF RNAPFESNLP VLMGLIGVWY INFFQSKSHL IAPYDQYLRH FPKFIQQLDM ESNGKRISKK GEIIPYDTCP VVWGDMGINA QHAFFQLLHQ GTHLIPIDFI ASLDKKPNAK GHHEILFSNV LAQAQAFMKG KSYEEALGEL LFKGLDKDEA KDLAHHRVFF GNRPSNILLL EKISPSNIGA LVALYEHKVF VQGVIWDINS FDQWGVELGK ELAVPILQEL EGHKSNAYFD SSTKHLIELY KNYNQ // ID FTSH_HELPY Reviewed; 632 AA. AC P71408; O07679; Q48268; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 122. DE RecName: Full=ATP-dependent zinc metalloprotease FtsH {ECO:0000255|HAMAP-Rule:MF_01458}; DE EC=3.4.24.- {ECO:0000255|HAMAP-Rule:MF_01458}; GN Name=ftsH {ECO:0000255|HAMAP-Rule:MF_01458}; GN OrderedLocusNames=HP_1069; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], SUBCELLULAR LOCATION, AND RP DISRUPTION PHENOTYPE. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=8892813; RA Ge Z., Taylor D.E.; RT "Sequencing, expression, and genetic characterization of the RT Helicobacter pylori ftsH gene encoding a protein homologous to members RT of a novel putative ATPase family."; RL J. Bacteriol. 178:6151-6157(1996). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 324-632. RC STRAIN=69A; RX PubMed=8550601; DOI=10.1074/jbc.271.1.446; RA Melchers K., Weitzenegger T., Buhmann A., Steinhilber W., Sachs G., RA Schaefer K.P.; RT "Cloning and membrane topology of a P type ATPase from Helicobacter RT pylori."; RL J. Biol. Chem. 271:446-457(1996). RN [5] RP X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF 160-419 NUCLEOTIDE-FREE AND RP COMPLEXED WITH ADP. RX PubMed=18421140; DOI=10.1107/S090904950706846X; RA Kim S.H., Kang G.B., Song H.E., Park S.J., Bea M.H., Eom S.H.; RT "Structural studies on Helicobacter pylori ATP-dependent protease, RT FtsH."; RL J. Synchrotron Radiat. 15:208-210(2008). CC -!- FUNCTION: Acts as a processive, ATP-dependent zinc CC metallopeptidase for both cytoplasmic and membrane proteins. Plays CC a role in the quality control of integral membrane proteins. CC {ECO:0000255|HAMAP-Rule:MF_01458}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01458}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01458}; CC -!- SUBUNIT: Homohexamer. {ECO:0000255|HAMAP-Rule:MF_01458}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000305|PubMed:8892813}; Multi-pass membrane protein CC {ECO:0000305|PubMed:8892813}; Cytoplasmic side CC {ECO:0000305|PubMed:8892813}. CC -!- DISRUPTION PHENOTYPE: A homozygous disruption strain was not CC identified, suggesting this gene may be essential. CC {ECO:0000269|PubMed:8892813}. CC -!- SIMILARITY: In the central section; belongs to the AAA ATPase CC family. {ECO:0000255|HAMAP-Rule:MF_01458}. CC -!- SIMILARITY: In the C-terminal section; belongs to the peptidase CC M41 family. {ECO:0000255|HAMAP-Rule:MF_01458}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U59452; AAC44563.1; -; Genomic_DNA. DR EMBL; U97567; AAB66377.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08115.1; -; Genomic_DNA. DR EMBL; U59625; AAB05472.1; -; Genomic_DNA. DR PIR; E64653; E64653. DR RefSeq; NP_207860.1; NC_000915.1. DR RefSeq; WP_000805281.1; NC_018939.1. DR PDB; 2R62; X-ray; 3.30 A; A/B=160-419. DR PDB; 2R65; X-ray; 3.30 A; A/B/C/D/E=160-419. DR PDBsum; 2R62; -. DR PDBsum; 2R65; -. DR ProteinModelPortal; P71408; -. DR SMR; P71408; 163-408. DR DIP; DIP-3549N; -. DR IntAct; P71408; 4. DR MINT; MINT-188002; -. DR STRING; 85962.HP1069; -. DR PaxDb; P71408; -. DR PRIDE; P71408; -. DR EnsemblBacteria; AAD08115; AAD08115; HP_1069. DR GeneID; 899605; -. DR KEGG; heo:C694_05525; -. DR KEGG; hpy:HP1069; -. DR PATRIC; 20593477; VBIHelPyl33062_1118. DR eggNOG; ENOG4105C3H; Bacteria. DR eggNOG; COG0465; LUCA. DR KO; K03798; -. DR OMA; FFQSPIV; -. DR OrthoDB; EOG6PKFBJ; -. DR BioCyc; HPY:HP1069-MONOMER; -. DR EvolutionaryTrace; P71408; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030163; P:protein catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01458; FtsH; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR005936; FtsH. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000642; Peptidase_M41. DR Pfam; PF00004; AAA; 1. DR Pfam; PF01434; Peptidase_M41; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01241; FtsH_fam; 1. DR PROSITE; PS00674; AAA; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Cell inner membrane; Cell membrane; KW Complete proteome; Hydrolase; Membrane; Metal-binding; KW Metalloprotease; Nucleotide-binding; Protease; Reference proteome; KW Transmembrane; Transmembrane helix; Zinc. FT CHAIN 1 632 ATP-dependent zinc metalloprotease FtsH. FT /FTId=PRO_0000084636. FT TOPO_DOM 1 9 Cytoplasmic. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT TRANSMEM 10 30 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT TOPO_DOM 31 116 Periplasmic. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT TRANSMEM 117 137 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT TOPO_DOM 138 632 Cytoplasmic. {ECO:0000305}. FT NP_BIND 213 217 ATP. FT ACT_SITE 435 435 {ECO:0000255|HAMAP-Rule:MF_01458}. FT METAL 434 434 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT METAL 438 438 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT METAL 511 511 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01458}. FT BINDING 173 173 ATP; via amide nitrogen and carbonyl FT oxygen. FT BINDING 354 354 ATP. FT CONFLICT 275 275 G -> P (in Ref. 1; AAC44563). FT {ECO:0000305}. FT CONFLICT 283 284 VV -> MI (in Ref. 1; AAC44563). FT {ECO:0000305}. FT CONFLICT 297 297 L -> F (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 354 354 H -> D (in Ref. 1; AAC44563). FT {ECO:0000305}. FT CONFLICT 366 367 LQ -> FE (in Ref. 1; AAC44563). FT {ECO:0000305}. FT CONFLICT 401 402 RQ -> KL (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 401 401 R -> K (in Ref. 1; AAC44563). FT {ECO:0000305}. FT CONFLICT 430 430 I -> M (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 449 449 A -> G (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 455 455 S -> Y (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 499 499 V -> F (in Ref. 2; AAB66377). FT {ECO:0000305}. FT CONFLICT 576 576 K -> E (in Ref. 1; AAC44563 and 4; FT AAB05472). {ECO:0000305}. FT CONFLICT 616 616 V -> A (in Ref. 1; AAC44563). FT {ECO:0000305}. FT HELIX 169 171 {ECO:0000244|PDB:2R65}. FT STRAND 172 174 {ECO:0000244|PDB:2R62}. FT TURN 176 178 {ECO:0000244|PDB:2R62}. FT HELIX 179 190 {ECO:0000244|PDB:2R62}. FT HELIX 192 198 {ECO:0000244|PDB:2R62}. FT STRAND 206 209 {ECO:0000244|PDB:2R65}. FT STRAND 211 215 {ECO:0000244|PDB:2R65}. FT HELIX 216 224 {ECO:0000244|PDB:2R62}. FT TURN 225 228 {ECO:0000244|PDB:2R62}. FT STRAND 231 234 {ECO:0000244|PDB:2R65}. FT TURN 238 241 {ECO:0000244|PDB:2R62}. FT STRAND 244 246 {ECO:0000244|PDB:2R62}. FT STRAND 248 252 {ECO:0000244|PDB:2R62}. FT HELIX 255 260 {ECO:0000244|PDB:2R62}. FT STRAND 265 269 {ECO:0000244|PDB:2R62}. FT HELIX 271 273 {ECO:0000244|PDB:2R62}. FT TURN 291 293 {ECO:0000244|PDB:2R65}. FT TURN 294 302 {ECO:0000244|PDB:2R62}. FT STRAND 307 309 {ECO:0000244|PDB:2R65}. FT STRAND 312 315 {ECO:0000244|PDB:2R62}. FT HELIX 325 328 {ECO:0000244|PDB:2R62}. FT STRAND 329 333 {ECO:0000244|PDB:2R62}. FT STRAND 335 338 {ECO:0000244|PDB:2R65}. FT TURN 344 346 {ECO:0000244|PDB:2R62}. FT HELIX 347 354 {ECO:0000244|PDB:2R62}. FT STRAND 356 358 {ECO:0000244|PDB:2R62}. FT TURN 366 370 {ECO:0000244|PDB:2R62}. FT STRAND 371 373 {ECO:0000244|PDB:2R62}. FT HELIX 378 390 {ECO:0000244|PDB:2R62}. FT STRAND 393 395 {ECO:0000244|PDB:2R62}. FT HELIX 402 406 {ECO:0000244|PDB:2R62}. FT STRAND 408 411 {ECO:0000244|PDB:2R65}. SQ SEQUENCE 632 AA; 69745 MW; 1D0674163FFC206D CRC64; MKPTNEPKKP FFQSPIILAV LGGILLIFFL RSFNSDGSFS DNFLASSTKN VSYHEIKQLI SNNEVENVSI GQTLIKASHK EGNNRVIYIA KRVPDLTLVP LLDEKKINYS GFSESNFFTD MLGWLMPILV ILGLWMFMAN RMQKNMGGGI FGMGSAKKLI NAEKPNVRFN DMAGNEEAKE EVVEIVDFLK YPERYANLGA KIPKGVLLVG PPGTGKTLLA KAVAGEAHVP FFSMGGSSFI EMFVGLGASR VRDLFETAKK QAPSIIFIDE IDAIGKSRAA GGVVSGNDER EQTLNQLLAE MDGFGSENAP VIVLAATNRP EILDPALMRP GRFDRQVLVD KPDFNGRVEI LKVHIKGVKL ANDVNLQEVA KLTAGLAGAD LANIINEAAL LAGRNNQKEV RQQHLKEAVE RGIAGLEKKS RRISPKEKKI VAYHESGHAV ISEMTKGSAR VNKVSIIPRG MAALGYTLNT PEENKYLMQK HELIAEIDVL LGGRAAEDVF LEEISTGASN DLERATDIIK GMVSYYGMSS VSGLMVLEKQ RNAFLGGGYG SSREFSEKTA EEMDLFIKNL LEERYKHVKQ TLSDYREAIE IMVKELFDKE VITGERVREI ISEYEVANNL ESRLIPLEEQ AS // ID FTSZ_HELPY Reviewed; 385 AA. AC P56097; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 20-JAN-2016, entry version 103. DE RecName: Full=Cell division protein FtsZ {ECO:0000255|HAMAP-Rule:MF_00909}; GN Name=ftsZ {ECO:0000255|HAMAP-Rule:MF_00909}; GN OrderedLocusNames=HP_0979; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Essential cell division protein that forms a contractile CC ring structure (Z ring) at the future cell division site. The CC regulation of the ring assembly controls the timing and the CC location of cell division. One of the functions of the FtsZ ring CC is to recruit other cell division proteins to the septum to CC produce a new cell wall between the dividing cells. Binds GTP and CC shows GTPase activity. {ECO:0000255|HAMAP-Rule:MF_00909}. CC -!- SUBUNIT: Homodimer. Polymerizes to form a dynamic ring structure CC in a strictly GTP-dependent manner. Interacts directly with CC several other division proteins. {ECO:0000255|HAMAP- CC Rule:MF_00909}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00909}. CC Note=Assembles at midcell at the inner surface of the cytoplasmic CC membrane. {ECO:0000255|HAMAP-Rule:MF_00909}. CC -!- SIMILARITY: Belongs to the FtsZ family. {ECO:0000255|HAMAP- CC Rule:MF_00909}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08025.1; -; Genomic_DNA. DR PIR; C64642; C64642. DR RefSeq; NP_207770.1; NC_000915.1. DR RefSeq; WP_000233600.1; NC_018939.1. DR ProteinModelPortal; P56097; -. DR DIP; DIP-3610N; -. DR IntAct; P56097; 4. DR MINT; MINT-163183; -. DR STRING; 85962.HP0979; -. DR PaxDb; P56097; -. DR PRIDE; P56097; -. DR EnsemblBacteria; AAD08025; AAD08025; HP_0979. DR GeneID; 899511; -. DR KEGG; heo:C694_05040; -. DR KEGG; hpy:HP0979; -. DR PATRIC; 20593273; VBIHelPyl33062_1018. DR eggNOG; ENOG4105CDK; Bacteria. DR eggNOG; COG0206; LUCA. DR KO; K03531; -. DR OMA; IWGTSVD; -. DR OrthoDB; EOG6S7XZG; -. DR BioCyc; HPY:HP0979-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0032153; C:cell division site; IEA:UniProtKB-HAMAP. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000917; P:barrier septum assembly; IEA:UniProtKB-KW. DR GO; GO:0043093; P:FtsZ-dependent cytokinesis; IEA:UniProtKB-HAMAP. DR GO; GO:0051258; P:protein polymerization; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.20; -; 1. DR Gene3D; 3.40.50.1440; -; 1. DR HAMAP; MF_00909; FtsZ; 1. DR InterPro; IPR000158; Cell_div_FtsZ. DR InterPro; IPR020805; Cell_div_FtsZ_CS. DR InterPro; IPR024757; FtsZ_C. DR InterPro; IPR008280; Tub_FtsZ_C. DR InterPro; IPR018316; Tubulin/FtsZ_2-layer-sand-dom. DR InterPro; IPR003008; Tubulin_FtsZ_GTPase. DR Pfam; PF12327; FtsZ_C; 1. DR Pfam; PF00091; Tubulin; 1. DR PRINTS; PR00423; CELLDVISFTSZ. DR SMART; SM00864; Tubulin; 1. DR SMART; SM00865; Tubulin_C; 1. DR SUPFAM; SSF52490; SSF52490; 1. DR SUPFAM; SSF55307; SSF55307; 1. DR TIGRFAMs; TIGR00065; ftsZ; 1. DR PROSITE; PS01134; FTSZ_1; 1. DR PROSITE; PS01135; FTSZ_2; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Complete proteome; Cytoplasm; GTP-binding; KW Nucleotide-binding; Reference proteome; Septation. FT CHAIN 1 385 Cell division protein FtsZ. FT /FTId=PRO_0000114356. FT NP_BIND 37 41 GTP. {ECO:0000255|HAMAP-Rule:MF_00909}. FT NP_BIND 125 127 GTP. {ECO:0000255|HAMAP-Rule:MF_00909}. FT BINDING 156 156 GTP. {ECO:0000255|HAMAP-Rule:MF_00909}. FT BINDING 160 160 GTP. {ECO:0000255|HAMAP-Rule:MF_00909}. FT BINDING 204 204 GTP. {ECO:0000255|HAMAP-Rule:MF_00909}. SQ SEQUENCE 385 AA; 40954 MW; 601291720C336BA4 CRC64; MVHQSEMENY NIGQASIEEV SDPAYKGAKI VVIGVGGGGS NMIKHLVEYG VHQDVTPIAT NTDGQHLKNN PAPVKILLGK ESTGGLGAGG IPDIGRKAAE ESANEIKEAI KDAKLVIIST GLGGGTGTGA TPTIVKIAKE VGALTIAIVT KPFKYEGNQK RKRAEEGLKE LEQSSDSILV IPNDKILLTM KKNASTTECY REVDDVLVRA VSGISTIITK PGNINVDFAD LKSALGFKGF ALMGIGEATG EESAKLAVQN AIQSPLLDDA SIEGAKSIIV FFEHHPDYPM MAYSQACDFI QDQAHQDVDV KFGQHTSDNI PIDHVRVTII ATGAERNSGG ASLESIATPS QPVVKQTRKV GNGEYLKIPT EEELSIPTTM RIQQD // ID FUR_HELPY Reviewed; 150 AA. AC O25671; O32689; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 96. DE RecName: Full=Ferric uptake regulation protein; DE Short=Ferric uptake regulator; GN Name=fur; OrderedLocusNames=HP_1027; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9503612; DOI=10.1111/j.1574-6968.1998.tb12860.x; RA Bereswill S., Lichte F., Vey T., Fassbinder F., Kist M.; RT "Cloning and characterization of the fur gene from Helicobacter RT pylori."; RL FEMS Microbiol. Lett. 159:193-200(1998). CC -!- FUNCTION: Acts as a global negative controlling element, employing CC Fe(2+) as a cofactor to bind the operator of the repressed genes. CC {ECO:0000250}. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the Fur family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08073.1; -; Genomic_DNA. DR EMBL; Y14394; CAA74751.1; -; Genomic_DNA. DR PIR; C64648; C64648. DR RefSeq; NP_207817.1; NC_000915.1. DR RefSeq; WP_000824996.1; NC_018939.1. DR PDB; 2XIG; X-ray; 1.85 A; A/B/C/D=1-150. DR PDBsum; 2XIG; -. DR ProteinModelPortal; O25671; -. DR STRING; 85962.HP1027; -. DR PaxDb; O25671; -. DR PRIDE; O25671; -. DR DNASU; 899562; -. DR EnsemblBacteria; AAD08073; AAD08073; HP_1027. DR GeneID; 899562; -. DR KEGG; heo:C694_05315; -. DR KEGG; hpy:HP1027; -. DR PATRIC; 20593391; VBIHelPyl33062_1076. DR eggNOG; ENOG41090R7; Bacteria. DR eggNOG; COG0735; LUCA. DR KO; K03711; -. DR OMA; YGVCTND; -. DR OrthoDB; EOG6J48SS; -. DR BioCyc; HPY:HP1027-MONOMER; -. DR EvolutionaryTrace; O25671; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR002481; FUR. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01475; FUR; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; DNA-binding; Iron; KW Metal-binding; Reference proteome; Repressor; Transcription; KW Transcription regulation; Zinc. FT CHAIN 1 150 Ferric uptake regulation protein. FT /FTId=PRO_0000095555. FT REGION 1 93 DNA-binding. {ECO:0000250}. FT REGION 94 150 Dimerization. {ECO:0000250}. FT COMPBIAS 86 89 His-rich. FT METAL 42 42 Zinc. {ECO:0000250}. FT METAL 90 90 Zinc. {ECO:0000250}. FT METAL 96 96 Iron. {ECO:0000250}. FT METAL 98 98 Iron. {ECO:0000250}. FT METAL 99 99 Zinc. {ECO:0000250}. FT METAL 102 102 Zinc. {ECO:0000250}. FT METAL 105 105 Zinc. {ECO:0000250}. FT METAL 110 110 Zinc. {ECO:0000250}. FT METAL 117 117 Iron. {ECO:0000250}. FT METAL 134 134 Iron. {ECO:0000250}. FT CONFLICT 124 124 V -> I (in Ref. 2; CAA74751). FT {ECO:0000305}. FT HELIX 7 20 {ECO:0000244|PDB:2XIG}. FT HELIX 26 38 {ECO:0000244|PDB:2XIG}. FT HELIX 45 55 {ECO:0000244|PDB:2XIG}. FT HELIX 61 73 {ECO:0000244|PDB:2XIG}. FT STRAND 76 82 {ECO:0000244|PDB:2XIG}. FT TURN 83 85 {ECO:0000244|PDB:2XIG}. FT STRAND 86 92 {ECO:0000244|PDB:2XIG}. FT STRAND 98 102 {ECO:0000244|PDB:2XIG}. FT TURN 103 105 {ECO:0000244|PDB:2XIG}. FT STRAND 108 111 {ECO:0000244|PDB:2XIG}. FT HELIX 114 125 {ECO:0000244|PDB:2XIG}. FT TURN 126 128 {ECO:0000244|PDB:2XIG}. FT STRAND 130 141 {ECO:0000244|PDB:2XIG}. FT HELIX 143 146 {ECO:0000244|PDB:2XIG}. SQ SEQUENCE 150 AA; 17681 MW; 9227BB71A6BD5100 CRC64; MKRLETLESI LERLRMSIKK NGLKNSKQRE EVVSVLYRSG THLSPEEITH SIRQKDKNTS ISSVYRILNF LEKENFICVL ETSKSGRRYE IAAKEHHDHI ICLHCGKIIE FADPEIENRQ NEVVKKYQAK LISHDMKMFV WCKECQESEC // ID GCH1_HELPY Reviewed; 180 AA. AC P56462; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=GTP cyclohydrolase 1; DE EC=3.5.4.16; DE AltName: Full=GTP cyclohydrolase I; DE Short=GTP-CH-I; GN Name=folE; OrderedLocusNames=HP_0928; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: GTP + H(2)O = formate + 2-amino-4-hydroxy-6- CC (erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate. CC -!- PATHWAY: Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate CC biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step CC 1/1. CC -!- SUBUNIT: Toroid-shaped homodecamer, composed of two pentamers of CC five dimers. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GTP cyclohydrolase I family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07973.1; -; Genomic_DNA. DR PIR; H64635; H64635. DR RefSeq; NP_207720.1; NC_000915.1. DR RefSeq; WP_000427004.1; NC_018939.1. DR ProteinModelPortal; P56462; -. DR DIP; DIP-3586N; -. DR IntAct; P56462; 5. DR MINT; MINT-164654; -. DR STRING; 85962.HP0928; -. DR PaxDb; P56462; -. DR PRIDE; P56462; -. DR EnsemblBacteria; AAD07973; AAD07973; HP_0928. DR GeneID; 899457; -. DR KEGG; heo:C694_04775; -. DR KEGG; hpy:HP0928; -. DR PATRIC; 20593157; VBIHelPyl33062_0964. DR eggNOG; ENOG4105EUJ; Bacteria. DR eggNOG; COG0302; LUCA. DR KO; K01495; -. DR OMA; IATAMVQ; -. DR OrthoDB; EOG6XHC8G; -. DR BioCyc; HPY:HP0928-MONOMER; -. DR UniPathway; UPA00848; UER00151. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003934; F:GTP cyclohydrolase I activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0035998; P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0046654; P:tetrahydrofolate biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00223; FolE; 1. DR InterPro; IPR001474; GTP_CycHdrlase_I. DR InterPro; IPR018234; GTP_CycHdrlase_I_CS. DR InterPro; IPR020602; GTP_CycHdrlase_I_dom. DR PANTHER; PTHR11109; PTHR11109; 1. DR Pfam; PF01227; GTP_cyclohydroI; 1. DR TIGRFAMs; TIGR00063; folE; 1. DR PROSITE; PS00859; GTP_CYCLOHYDROL_1_1; 1. DR PROSITE; PS00860; GTP_CYCLOHYDROL_1_2; 1. PE 3: Inferred from homology; KW Complete proteome; GTP-binding; Hydrolase; Metal-binding; KW Nucleotide-binding; One-carbon metabolism; Reference proteome; Zinc. FT CHAIN 1 180 GTP cyclohydrolase 1. FT /FTId=PRO_0000119413. FT METAL 71 71 Zinc. {ECO:0000250}. FT METAL 74 74 Zinc. {ECO:0000250}. FT METAL 142 142 Zinc. {ECO:0000250}. SQ SEQUENCE 180 AA; 20858 MW; 95521F3F3AE863FF CRC64; MENFFNQFFE SIGEDKNREG LKETPKRVQE LWKFLYKGYK EDPRVALKSA YFQGVCDEMI VAQNIEFYST CEHHLLPFLG NISVGYIPKE KIVGISAIAK LIEIYSRRLQ IQERLTIQIA ETFDEIIEPR GVIVVCEAKH LCMSMQGVQK QNAIIKTSVL RGLFKKDSKT RAEFMQLLKS // ID FUMC_HELPY Reviewed; 463 AA. AC O25883; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=Fumarate hydratase class II {ECO:0000255|HAMAP-Rule:MF_00743}; DE Short=Fumarase C {ECO:0000255|HAMAP-Rule:MF_00743}; DE EC=4.2.1.2 {ECO:0000255|HAMAP-Rule:MF_00743}; GN Name=fumC {ECO:0000255|HAMAP-Rule:MF_00743}; GN OrderedLocusNames=HP_1325; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible addition of water to fumarate CC to give L-malate. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: (S)-malate = fumarate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_00743}. CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; (S)- CC malate from fumarate: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00743}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_00743}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00743}. CC -!- MISCELLANEOUS: There are 2 substrate-binding sites: the catalytic CC A site, and the non-catalytic B site that may play a role in the CC transfer of substrate or product between the active site and the CC solvent. Alternatively, the B site may bind allosteric effectors CC (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II fumarase/aspartase family. CC Fumarase subfamily. {ECO:0000255|HAMAP-Rule:MF_00743}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08368.1; -; Genomic_DNA. DR PIR; E64685; E64685. DR RefSeq; NP_208117.1; NC_000915.1. DR RefSeq; WP_001160526.1; NC_018939.1. DR ProteinModelPortal; O25883; -. DR SMR; O25883; 4-459. DR DIP; DIP-3320N; -. DR IntAct; O25883; 4. DR MINT; MINT-167949; -. DR STRING; 85962.HP1325; -. DR PaxDb; O25883; -. DR PRIDE; O25883; -. DR EnsemblBacteria; AAD08368; AAD08368; HP_1325. DR GeneID; 898748; -. DR KEGG; heo:C694_06840; -. DR KEGG; hpy:HP1325; -. DR PATRIC; 20594031; VBIHelPyl33062_1386. DR eggNOG; ENOG4105C9Q; Bacteria. DR eggNOG; COG0114; LUCA. DR KO; K01679; -. DR OMA; FELNVYN; -. DR OrthoDB; EOG6V1M4M; -. DR BioCyc; HPY:HP1325-MONOMER; -. DR UniPathway; UPA00223; UER01007. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0045239; C:tricarboxylic acid cycle enzyme complex; IEA:InterPro. DR GO; GO:0004333; F:fumarate hydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006106; P:fumarate metabolic process; IEA:InterPro. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.275.10; -; 1. DR HAMAP; MF_00743; FumaraseC; 1. DR InterPro; IPR005677; Fum_hydII. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR018951; Fumarase_C_C. DR InterPro; IPR020557; Fumarate_lyase_CS. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR PANTHER; PTHR11444; PTHR11444; 1. DR Pfam; PF10415; FumaraseC_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SUPFAM; SSF48557; SSF48557; 1. DR TIGRFAMs; TIGR00979; fumC_II; 1. DR PROSITE; PS00163; FUMARATE_LYASES; 1. PE 3: Inferred from homology; KW Allosteric enzyme; Complete proteome; Cytoplasm; Lyase; KW Reference proteome; Tricarboxylic acid cycle. FT CHAIN 1 463 Fumarate hydratase class II. FT /FTId=PRO_0000161280. FT REGION 97 99 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT REGION 128 131 B site. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT REGION 138 140 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT REGION 186 187 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT REGION 323 325 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT ACT_SITE 187 187 Proton donor/acceptor. {ECO:0000250}. FT ACT_SITE 317 317 {ECO:0000250}. FT BINDING 318 318 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00743}. FT SITE 330 330 Important for catalytic activity. FT {ECO:0000250}. SQ SEQUENCE 463 AA; 50975 MW; D5798ADBC0EA0260 CRC64; MQFRIEHDTM GEIKVNDSQY WGAQTQRSLE NFKIGTEKMP KELIGAFAKL KRSLAVVNHK LGKLSLEKSQ AIIKACDCIL KGELCGEFPL AIWQTGSGTQ TNMNLNEVIA NKATEILGGN FREKKLIHPN DDVNMSQSSN DTFPTAMHIV SVLEITHRLL PSLENLLKTF KEKSQQFKEI VKIGRTHLQD ATPLTLGQEF SGYASMLEHS KQQILESLEH LRELAIGGTA VGTGLNAHKE LSEKVAEELS QFSGVKFVSA PNKFHALTSH DAIAYAHGAF KALAANLMKI ANDIRWLASG PRCGLGELNI PENEPGSSIM PGKVNPTQCE AMTMVAVQVM GNDTAIGIAA SQGNFELNVF KPVIIYNFLQ SLRLLSDSME SFNIHCASGI EPNREKIDYY LHHSLMLVTA LNPHVGYENA AKIAKNAHKK GISLKESALE LKLLSAEDFD KFVVPEKMIG PKA // ID G3P_HELPY Reviewed; 332 AA. AC P55971; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 110. DE RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000250|UniProtKB:P0A9B2}; DE Short=GAPDH {ECO:0000250|UniProtKB:P0A9B2}; DE EC=1.2.1.12 {ECO:0000250|UniProtKB:P0A9B2}; DE AltName: Full=NAD-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000250|UniProtKB:P0A9B2}; GN Name=gapA; Synonyms=gap; OrderedLocusNames=HP_0921; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the oxidative phosphorylation of CC glyceraldehyde 3-phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) CC using the cofactor NAD. The first reaction step involves the CC formation of a hemiacetal intermediate between G3P and a cysteine CC residue, and this hemiacetal intermediate is then oxidized to a CC thioester, with concomitant reduction of NAD to NADH. The reduced CC NADH is then exchanged with the second NAD, and the thioester is CC attacked by a nucleophilic inorganic phosphate to produce BPG. CC {ECO:0000250|UniProtKB:P0A9B2}. CC -!- CATALYTIC ACTIVITY: D-glyceraldehyde 3-phosphate + phosphate + CC NAD(+) = 3-phospho-D-glyceroyl phosphate + NADH. CC {ECO:0000250|UniProtKB:P0A9B2}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 1/5. {ECO:0000305}. CC -!- SUBUNIT: Homotetramer. {ECO:0000250|UniProtKB:P0A9B2}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the glyceraldehyde-3-phosphate CC dehydrogenase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07965.1; -; Genomic_DNA. DR PIR; A64635; A64635. DR RefSeq; NP_207713.1; NC_000915.1. DR RefSeq; WP_000688567.1; NC_018939.1. DR ProteinModelPortal; P55971; -. DR IntAct; P55971; 3. DR STRING; 85962.HP0921; -. DR PaxDb; P55971; -. DR PRIDE; P55971; -. DR EnsemblBacteria; AAD07965; AAD07965; HP_0921. DR GeneID; 899450; -. DR KEGG; heo:C694_04740; -. DR KEGG; hpy:HP0921; -. DR PATRIC; 20593143; VBIHelPyl33062_0957. DR eggNOG; ENOG4105C17; Bacteria. DR eggNOG; COG0057; LUCA. DR KO; K00134; -. DR OMA; HSLYQNQ; -. DR OrthoDB; EOG66TG3S; -. DR BioCyc; HPY:HP0921-MONOMER; -. DR UniPathway; UPA00109; UER00184. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004365; F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; ISS:UniProtKB. DR GO; GO:0051287; F:NAD binding; ISS:UniProtKB. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006006; P:glucose metabolic process; IEA:InterPro. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR020831; GlycerAld/Erythrose_P_DH. DR InterPro; IPR020830; GlycerAld_3-P_DH_AS. DR InterPro; IPR020829; GlycerAld_3-P_DH_cat. DR InterPro; IPR020828; GlycerAld_3-P_DH_NAD(P)-bd. DR InterPro; IPR006424; Glyceraldehyde-3-P_DH_1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR10836; PTHR10836; 1. DR Pfam; PF02800; Gp_dh_C; 1. DR Pfam; PF00044; Gp_dh_N; 1. DR PIRSF; PIRSF000149; GAP_DH; 1. DR PRINTS; PR00078; G3PDHDRGNASE. DR SMART; SM00846; Gp_dh_N; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01534; GAPDH-I; 1. DR PROSITE; PS00071; GAPDH; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Glycolysis; NAD; Nucleotide-binding; KW Oxidoreductase; Reference proteome. FT CHAIN 1 332 Glyceraldehyde-3-phosphate dehydrogenase. FT /FTId=PRO_0000145662. FT NP_BIND 10 11 NAD. {ECO:0000250|UniProtKB:P0A9B2}. FT REGION 150 152 Glyceraldehyde 3-phosphate binding. FT {ECO:0000250|UniProtKB:P0A9B2}. FT REGION 210 211 Glyceraldehyde 3-phosphate binding. FT {ECO:0000250|UniProtKB:P0A9B2}. FT ACT_SITE 151 151 Nucleophile. FT {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 36 36 NAD. {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 81 81 NAD; via carbonyl oxygen. FT {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 116 116 NAD. {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 181 181 Glyceraldehyde 3-phosphate. FT {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 197 197 Glyceraldehyde 3-phosphate. FT {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 233 233 Glyceraldehyde 3-phosphate. FT {ECO:0000250|UniProtKB:P0A9B2}. FT BINDING 314 314 NAD. {ECO:0000250|UniProtKB:P0A9B2}. FT SITE 178 178 Activates thiol group during catalysis. FT {ECO:0000250|UniProtKB:P0A9B2}. SQ SEQUENCE 332 AA; 37317 MW; 57F79227EE47E0B8 CRC64; MKIFINGFGR IGRCVLRAIL ERNDTNPKLE VIGINDPANW EILAYLLEHD SVHGLLPKEV RYSNYKLIIG SLEIPVFNSI KDLKGVDVII ECSGKFLEPK TLENYLLLGA KKVLLSAPFM GEYDEKQYPT LVYGVNHFCY QNQAIVSNAS CTTNAIAPIC AILDKAFKIK EGMLTTIHSY TSDQKLIDLA HPLDKRRSRA AASNIIPTTT KAALALHKVL PNLKNKMHGH SVRVPSLDVS MIDLSLFLEK KAPKDPINDL LIEASKGVLK GVLEIDLKER VSSDFISNPH SVIIAPDLTF TLENMVKIMG WYDNEWGYSN RLVDMAQFMY HY // ID GATA_HELPY Reviewed; 453 AA. AC P56114; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A; DE Short=Glu-ADT subunit A; DE EC=6.3.5.7; GN Name=gatA; OrderedLocusNames=HP_0830; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) CC through the transamidation of misacylated Glu-tRNA(Gln) in CC organisms which lack glutaminyl-tRNA synthetase. The reaction CC takes place in the presence of glutamine and ATP through an CC activated gamma-phospho-Glu-tRNA(Gln) (By similarity). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC -!- SUBUNIT: Heterotrimer of A, B and C subunits. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the amidase family. GatA subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07880.1; -; Genomic_DNA. DR PIR; F64623; F64623. DR RefSeq; NP_207623.1; NC_000915.1. DR RefSeq; WP_000631468.1; NC_018939.1. DR ProteinModelPortal; P56114; -. DR SMR; P56114; 44-450. DR DIP; DIP-3178N; -. DR IntAct; P56114; 8. DR MINT; MINT-176714; -. DR STRING; 85962.HP0830; -. DR PaxDb; P56114; -. DR PRIDE; P56114; -. DR EnsemblBacteria; AAD07880; AAD07880; HP_0830. DR GeneID; 899364; -. DR KEGG; heo:C694_04255; -. DR KEGG; hpy:HP0830; -. DR PATRIC; 20592951; VBIHelPyl33062_0864. DR eggNOG; ENOG4105C3P; Bacteria. DR eggNOG; COG0154; LUCA. DR KO; K02433; -. DR OMA; HASPLEM; -. DR OrthoDB; EOG61P6R9; -. DR BioCyc; HPY:HP0830-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1300.10; -; 1. DR HAMAP; MF_00120; GatA; 1. DR InterPro; IPR000120; Amidase. DR InterPro; IPR020556; Amidase_CS. DR InterPro; IPR023631; Amidase_dom. DR InterPro; IPR004412; GatA. DR PANTHER; PTHR11895; PTHR11895; 1. DR Pfam; PF01425; Amidase; 1. DR SUPFAM; SSF75304; SSF75304; 1. DR TIGRFAMs; TIGR00132; gatA; 1. DR PROSITE; PS00571; AMIDASES; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 453 Glutamyl-tRNA(Gln) amidotransferase FT subunit A. FT /FTId=PRO_0000105166. FT ACT_SITE 53 53 Charge relay system. {ECO:0000250}. FT ACT_SITE 128 128 Charge relay system. {ECO:0000250}. FT ACT_SITE 152 152 Acyl-ester intermediate. {ECO:0000250}. SQ SEQUENCE 453 AA; 49653 MW; A35814B32F1AE13A CRC64; MITLKQALSL SQDELETLKN EIDAKVRASD LNAYIKAPSL NGASAKGVPI LIKDNISVKG WEITCSSKIL EGYVAPYHAS VMENLHQNSM AGFGLSNMDE FAMGSTTESS CYGITKNPRD KNRVPGGSSG GSAAAVAGGL AVAALGSDTG GSIRQPASYC GCVGLKPTYG RVSRYGLIAY CSSFDQIGPI TQNVEDASIL FDAISGYDSK DSTSANLKPT QTFKNLNRDK RFKIAVLMDH IKDASNEVQL AYENTLKALK EMGHEIVEKK MLDSHYQISI YYIISMAEAS SNLARFDGVR YGRRAQNIKD LKELYLKSRS EGFGDEVKRR IMLGNFVLSS GYYDAYYLKA QQMRLIIKEQ YNKIFEEVDL IFTPVAPTSA HLFNYHASPL EMYLSDIYTI GANLSGLPAL SLPVAKDPLG LPIGMQFIAK AFDEQSLLDV SYALEQELDL KLD // ID GATC_HELPY Reviewed; 93 AA. AC O25626; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 81. DE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C; DE Short=Glu-ADT subunit C; DE EC=6.3.5.-; GN Name=gatC; OrderedLocusNames=HP_0975; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Allows the formation of correctly charged Asn-tRNA(Asn) CC or Gln-tRNA(Gln) through the transamidation of misacylated Asp- CC tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both CC of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction CC takes place in the presence of glutamine and ATP through an CC activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC -!- CATALYTIC ACTIVITY: ATP + L-aspartyl-tRNA(Asn) + L-glutamine = ADP CC + phosphate + L-asparaginyl-tRNA(Asn) + L-glutamate. CC -!- SUBUNIT: Heterotrimer of A, B and C subunits. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GatC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08021.1; -; Genomic_DNA. DR PIR; G64641; G64641. DR RefSeq; NP_207766.1; NC_000915.1. DR RefSeq; WP_001165207.1; NC_018939.1. DR ProteinModelPortal; O25626; -. DR IntAct; O25626; 19. DR MINT; MINT-4059238; -. DR STRING; 85962.HP0975; -. DR PaxDb; O25626; -. DR PRIDE; O25626; -. DR EnsemblBacteria; AAD08021; AAD08021; HP_0975. DR GeneID; 899507; -. DR KEGG; heo:C694_05015; -. DR KEGG; hpy:HP0975; -. DR PATRIC; 20593265; VBIHelPyl33062_1014. DR eggNOG; ENOG410855J; Bacteria. DR eggNOG; COG0721; LUCA. DR KO; K02435; -. DR OMA; HSQDHYF; -. DR OrthoDB; EOG625K3N; -. DR BioCyc; HPY:HP0975-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006450; P:regulation of translational fidelity; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00122; GatC; 1. DR InterPro; IPR003837; Asp/Glu-ADT_csu. DR Pfam; PF02686; Glu-tRNAGln; 1. DR SUPFAM; SSF141000; SSF141000; 1. DR TIGRFAMs; TIGR00135; gatC; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 93 Glutamyl-tRNA(Gln) amidotransferase FT subunit C. FT /FTId=PRO_0000105301. SQ SEQUENCE 93 AA; 10656 MW; 04B213101CE4B37E CRC64; MQIDDALLQR LEKLSMLEIK DEHKESVKGH LAEVLGFVEN IFALETSALK TDIELCTPLR EDEPKSQPNT AKEILSQNKH SQDHYFVVPK IIE // ID GATB_HELPY Reviewed; 474 AA. AC O25372; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 11-NOV-2015, entry version 90. DE RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; DE Short=Asp/Glu-ADT subunit B; DE EC=6.3.5.-; GN Name=gatB; OrderedLocusNames=HP_0658; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Allows the formation of correctly charged Asn-tRNA(Asn) CC or Gln-tRNA(Gln) through the transamidation of misacylated Asp- CC tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both CC of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction CC takes place in the presence of glutamine and ATP through an CC activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC -!- CATALYTIC ACTIVITY: ATP + L-aspartyl-tRNA(Asn) + L-glutamine = ADP CC + phosphate + L-asparaginyl-tRNA(Asn) + L-glutamate. CC -!- SUBUNIT: Heterotrimer of A, B and C subunits. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GatB/GatE family. GatB subfamily. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07723.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07723.1; ALT_INIT; Genomic_DNA. DR PIR; B64602; B64602. DR RefSeq; NP_207452.1; NC_000915.1. DR RefSeq; WP_000982564.1; NC_018939.1. DR ProteinModelPortal; O25372; -. DR IntAct; O25372; 1. DR MINT; MINT-4059404; -. DR STRING; 85962.HP0658; -. DR PaxDb; O25372; -. DR EnsemblBacteria; AAD07723; AAD07723; HP_0658. DR GeneID; 898991; -. DR KEGG; heo:C694_03405; -. DR KEGG; hpy:HP0658; -. DR PATRIC; 20592601; VBIHelPyl33062_0689. DR eggNOG; ENOG4105CHT; Bacteria. DR eggNOG; COG0064; LUCA. DR KO; K02434; -. DR OMA; ESADYRY; -. DR OrthoDB; EOG6RJV5B; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00121; GatB; 1. DR InterPro; IPR004413; Apn/Gln-ADT_bsu. DR InterPro; IPR017959; Asn/Gln-tRNA_amidoTrfase_suB/E. DR InterPro; IPR006075; Asn/Gln-tRNA_Trfase_suB/E_cat. DR InterPro; IPR018027; Asn/Gln_amidotransferase. DR InterPro; IPR003789; Asn/Gln_tRNA_amidoTrfrase-rel. DR InterPro; IPR017958; Gln-tRNA_amidoTrfase_suB_CS. DR PANTHER; PTHR11659; PTHR11659; 1. DR Pfam; PF02934; GatB_N; 1. DR Pfam; PF02637; GatB_Yqey; 1. DR SMART; SM00845; GatB_Yqey; 1. DR SUPFAM; SSF89095; SSF89095; 1. DR TIGRFAMs; TIGR00133; gatB; 1. DR PROSITE; PS01234; GATB; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 474 Aspartyl/glutamyl-tRNA(Asn/Gln) FT amidotransferase subunit B. FT /FTId=PRO_0000148794. SQ SEQUENCE 474 AA; 53157 MW; 990714A74197B34D CRC64; MPFEAVIGLE VHVQLNTKTK IFCSCSTSFG ESPNSNTCPV CLGLPGALPV LNKEVVKKAI QLGTAIEANI NQYSIFARKN YFYPDLPKAY QISQFEVPIV SDGKLEIDTK EGAKIVRIER AHMEEDAGKN IHEGSYSLVD LNRACTPLLE IVSKPDMRNS EEAIAYLKKL HAIVRFIGIS DANMQEGNFR CDANVSIRPK GDEKLYTRVE IKNLNSFRFI AKAIEYEIER QSAAWENGRY NEEVVQETRL FDTHKGITLS MRNKEESADY RYFKDPDLYP VFIDEKLLKE AQKINELPSA KKIRYMKDFN LKEDDANLLV SDPLLAQYFE SMLHLGVKAK TSVTWLCVEL LGRLKAEITL ENCGVSTHML GALAKRIDEG KISGKSAKDV LDKLLEEQGG DVDALIEQMG LSQVNDTEAI VKVIEEVLKN NADKVLEYKS GKDKLFGFFV GQAMKNLKGA NPSVVNAILK EKLG // ID GLMU_HELPY Reviewed; 433 AA. AC O25393; DT 02-MAY-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 104. DE RecName: Full=Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; DE Includes: DE RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; DE EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631}; DE AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; DE Includes: DE RecName: Full=Glucosamine-1-phosphate N-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; DE EC=2.3.1.157 {ECO:0000255|HAMAP-Rule:MF_01631}; GN Name=glmU {ECO:0000255|HAMAP-Rule:MF_01631}; GN OrderedLocusNames=HP_0683; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the last two sequential reactions in the de CC novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- CC GlcNAc). The C-terminal domain catalyzes the transfer of acetyl CC group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) CC to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is CC converted into UDP-GlcNAc by the transfer of uridine 5- CC monophosphate (from uridine 5-triphosphate), a reaction catalyzed CC by the N-terminal domain. {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + alpha-D-glucosamine 1-phosphate = CC CoA + N-acetyl-alpha-D-glucosamine 1-phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- CATALYTIC ACTIVITY: UTP + N-acetyl-alpha-D-glucosamine 1-phosphate CC = diphosphate + UDP-N-acetyl-alpha-D-glucosamine. CC {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01631}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01631}; CC -!- PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D- CC glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate CC from alpha-D-glucosamine 6-phosphate (route II): step 2/2. CC {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D- CC glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N- CC acetyl-alpha-D-glucosamine 1-phosphate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS lipid A CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- SUBUNIT: Homotrimer. {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- SIMILARITY: In the N-terminal section; belongs to the N- CC acetylglucosamine-1-phosphate uridyltransferase family. CC {ECO:0000255|HAMAP-Rule:MF_01631}. CC -!- SIMILARITY: In the C-terminal section; belongs to the transferase CC hexapeptide repeat family. {ECO:0000255|HAMAP-Rule:MF_01631}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14885.1; -; Genomic_DNA. DR PIR; C64605; C64605. DR RefSeq; NP_207477.1; NC_000915.1. DR RefSeq; WP_001862579.1; NC_018939.1. DR ProteinModelPortal; O25393; -. DR STRING; 85962.HP0683; -. DR PaxDb; O25393; -. DR PRIDE; O25393; -. DR EnsemblBacteria; AAD14885; AAD14885; HP_0683. DR GeneID; 898969; -. DR KEGG; heo:C694_03520; -. DR KEGG; hpy:HP0683; -. DR PATRIC; 20592649; VBIHelPyl33062_0713. DR eggNOG; ENOG4105CAJ; Bacteria. DR eggNOG; COG1207; LUCA. DR KO; K04042; -. DR OMA; SITANYD; -. DR OrthoDB; EOG6Z6FQZ; -. DR BioCyc; HPY:HP0683-MONOMER; -. DR UniPathway; UPA00113; UER00532. DR UniPathway; UPA00113; UER00533. DR UniPathway; UPA00973; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0019134; F:glucosamine-1-phosphate N-acetyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003977; F:UDP-N-acetylglucosamine diphosphorylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000902; P:cell morphogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:InterPro. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR GO; GO:0006048; P:UDP-N-acetylglucosamine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.90.550.10; -; 1. DR HAMAP; MF_01631; GlmU; 1. DR InterPro; IPR005882; Bifunctional_GlmU. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR018357; Hexapep_transf_CS. DR InterPro; IPR025877; MobA-like_NTP_Trfase. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR InterPro; IPR011004; Trimer_LpxA-like. DR Pfam; PF00132; Hexapep; 1. DR Pfam; PF12804; NTP_transf_3; 1. DR SUPFAM; SSF51161; SSF51161; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR01173; glmU; 1. DR PROSITE; PS00101; HEXAPEP_TRANSFERASES; 1. PE 3: Inferred from homology; KW Acyltransferase; Cell shape; Cell wall biogenesis/degradation; KW Complete proteome; Cytoplasm; Magnesium; Metal-binding; KW Multifunctional enzyme; Nucleotidyltransferase; KW Peptidoglycan synthesis; Reference proteome; Repeat; Transferase. FT CHAIN 1 433 Bifunctional protein GlmU. FT /FTId=PRO_0000233782. FT REGION 1 226 Pyrophosphorylase. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT REGION 7 10 UDP-GlcNAc binding. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT REGION 80 81 UDP-GlcNAc binding. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT REGION 227 247 Linker. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT REGION 248 433 N-acetyltransferase. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT REGION 362 363 Acetyl-CoA binding. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT ACT_SITE 339 339 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT METAL 106 106 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT METAL 224 224 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 21 21 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 138 138 UDP-GlcNAc; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01631}. FT BINDING 152 152 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 167 167 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 224 224 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 311 311 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 328 328 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 342 342 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 353 353 UDP-GlcNAc. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 356 356 Acetyl-CoA; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01631}. FT BINDING 381 381 Acetyl-CoA. {ECO:0000255|HAMAP- FT Rule:MF_01631}. FT BINDING 399 399 Acetyl-CoA; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01631}. FT BINDING 416 416 Acetyl-CoA. {ECO:0000255|HAMAP- FT Rule:MF_01631}. SQ SEQUENCE 433 AA; 47803 MW; A49870A4446CC16F CRC64; MLSVIILAAG KGTRMRSSLP KTLHTICGEP MLFYILETAF SISDDVHLIL HHQQERIKEA VLERFKGVIF HTQIVEKYSG TGGAIMQKDK TPISTKHERV LILNADMPLI TKDALAPLLE SKNNAIGLLH LADPKGYGRV VLENHQVKKI VEEKDANDEE KEIKSVNAGV YGFERDFLEK YLPKLHDQNA QKEYYLTDLI ALGINENETI DAIFLKEECF LGVNSQTERA KAEEIMLERL RKNAMDLGVV MQLPNSIYLE KGVSFKGECV LEQGVRLIGN CLIENAHIKA YSVIEESQIV NSSVGPFAHA RPKSVICNSH VGNFVETKNA KLQGTKAGHL SYLGDCEIGK NTNVGAGVIT CNYDGKKKHQ TIIGENVFIG SDSQLVAPIN IGSNVLIGSG TTITKDIPSG SLSLSRAPQT NIENGYFKFF KKP // ID GLK_HELPY Reviewed; 336 AA. AC O25731; DT 23-JAN-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=Glucokinase {ECO:0000255|HAMAP-Rule:MF_00524}; DE EC=2.7.1.2 {ECO:0000255|HAMAP-Rule:MF_00524}; DE AltName: Full=Glucose kinase {ECO:0000255|HAMAP-Rule:MF_00524}; GN Name=glk {ECO:0000255|HAMAP-Rule:MF_00524}; OrderedLocusNames=HP_1103; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + D-glucose = ADP + D-glucose 6-phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00524}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00524}. CC -!- SIMILARITY: Belongs to the bacterial glucokinase family. CC {ECO:0000255|HAMAP-Rule:MF_00524}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08146.1; -; Genomic_DNA. DR PIR; G64657; G64657. DR RefSeq; NP_207894.1; NC_000915.1. DR RefSeq; WP_001126886.1; NC_018939.1. DR ProteinModelPortal; O25731; -. DR STRING; 85962.HP1103; -. DR PaxDb; O25731; -. DR PRIDE; O25731; -. DR EnsemblBacteria; AAD08146; AAD08146; HP_1103. DR GeneID; 899639; -. DR KEGG; heo:C694_05690; -. DR KEGG; hpy:HP1103; -. DR PATRIC; 20593545; VBIHelPyl33062_1152. DR eggNOG; ENOG4105CHC; Bacteria. DR eggNOG; COG0837; LUCA. DR KO; K00845; -. DR OMA; GHADFAP; -. DR OrthoDB; EOG64BQ47; -. DR BioCyc; HPY:HP1103-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004340; F:glucokinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00524; Glucokinase; 1. DR InterPro; IPR003836; Glucokinase. DR Pfam; PF02685; Glucokinase; 1. DR TIGRFAMs; TIGR00749; glk; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Glycolysis; Kinase; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 336 Glucokinase. FT /FTId=PRO_0000215128. FT NP_BIND 12 17 ATP. {ECO:0000255|HAMAP-Rule:MF_00524}. SQ SEQUENCE 336 AA; 36661 MW; BA804AB6040151D8 CRC64; MPKTETYPRL LADIGGTNAR FGLEVAPRQI ECIEVLRCED FESLSDAVRF YLSKCKESLK LHPIYGSFAV ATPIMGDFVQ MTNNHWTFSI ETTRQCLTLK KLLVINDFVA QAYAISAMQE NDLAQIGGIK CEINAPKAIL GPGTGLGVST LIQNSDGSLK VLPGEGGHVS FAPFDDLEIL VWQYARSKFN HVSAERFLSG SGLVLIYEAL SKRKGLEKVA KLSKAELTPQ IISECALNGD YPICRLTLDT FCSMLGTLAA DVALTLGARG GVYLCGGIIP RFIDYFKTSP FRARFETKGR MGAFLASIPV HVVLKKTPGL DGAGIALENY LLHDKI // ID GLMM_HELPY Reviewed; 445 AA. AC P25177; Q6V395; DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 20-JAN-2016, entry version 111. DE RecName: Full=Phosphoglucosamine mutase; DE EC=5.4.2.10; GN Name=glmM; Synonyms=ureC; OrderedLocusNames=HP_0075; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=2001995; RA Labigne A., Cussac V., Courcoux P.; RT "Shuttle cloning and nucleotide sequences of Helicobacter pylori genes RT responsible for urease activity."; RL J. Bacteriol. 173:1920-1931(1991). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RA She F.F., Zhang J., Ding H.; RT "Gene cloning and expression of glmM in E. coli."; RL Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP FUNCTION AS A PHOSPHOGLUCOSAMINE MUTASE. RX PubMed=9171391; RA De Reuse H., Labigne A., Mengin-Lecreulx D.; RT "The Helicobacter pylori ureC gene codes for a phosphoglucosamine RT mutase."; RL J. Bacteriol. 179:3488-3493(1997). RN [5] RP PHOSPHORYLATION AT SER-99. RX PubMed=10671448; DOI=10.1128/JB.182.5.1280-1285.2000; RA Jolly L., Pompeo F., van Heijenoort J., Fassy F., Mengin-Lecreulx D.; RT "Autophosphorylation of phosphoglucosamine mutase from Escherichia RT coli."; RL J. Bacteriol. 182:1280-1285(2000). CC -!- FUNCTION: Catalyzes the conversion of glucosamine-6-phosphate to CC glucosamine-1-phosphate. {ECO:0000269|PubMed:9171391}. CC -!- CATALYTIC ACTIVITY: Alpha-D-glucosamine 1-phosphate = D- CC glucosamine 6-phosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000250}; CC -!- PTM: Activated by phosphorylation. Can autophosphorylate in vitro CC using ATP. {ECO:0000269|PubMed:10671448}. CC -!- SIMILARITY: Belongs to the phosphohexose mutase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M60398; AAA25018.1; -; Genomic_DNA. DR EMBL; AY353251; AAQ57666.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07146.1; -; Genomic_DNA. DR PIR; C38537; C38537. DR RefSeq; NP_206875.1; NC_000915.1. DR RefSeq; WP_000688400.1; NC_018939.1. DR ProteinModelPortal; P25177; -. DR DIP; DIP-3160N; -. DR MINT; MINT-176642; -. DR STRING; 85962.HP0075; -. DR iPTMnet; P25177; -. DR PaxDb; P25177; -. DR PRIDE; P25177; -. DR DNASU; 900169; -. DR EnsemblBacteria; AAD07146; AAD07146; HP_0075. DR GeneID; 900169; -. DR KEGG; heo:C694_00365; -. DR KEGG; hpy:HP0075; -. DR PATRIC; 20591355; VBIHelPyl33062_0078. DR eggNOG; ENOG4107QJF; Bacteria. DR eggNOG; COG1109; LUCA. DR KO; K03431; -. DR OMA; FNLGGEQ; -. DR OrthoDB; EOG6TN467; -. DR BioCyc; HPY:HP0075-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008966; F:phosphoglucosamine mutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.30.310.50; -; 1. DR Gene3D; 3.40.120.10; -; 3. DR HAMAP; MF_01554_B; GlmM_B; 1. DR InterPro; IPR005844; A-D-PHexomutase_a/b/a-I. DR InterPro; IPR016055; A-D-PHexomutase_a/b/a-I/II/III. DR InterPro; IPR005845; A-D-PHexomutase_a/b/a-II. DR InterPro; IPR005846; A-D-PHexomutase_a/b/a-III. DR InterPro; IPR005843; A-D-PHexomutase_C. DR InterPro; IPR016066; A-D-PHexomutase_CS. DR InterPro; IPR005841; Alpha-D-phosphohexomutase_SF. DR InterPro; IPR006352; GlmM_bact. DR Pfam; PF02878; PGM_PMM_I; 1. DR Pfam; PF02879; PGM_PMM_II; 1. DR Pfam; PF02880; PGM_PMM_III; 1. DR Pfam; PF00408; PGM_PMM_IV; 1. DR PRINTS; PR00509; PGMPMM. DR SUPFAM; SSF53738; SSF53738; 3. DR SUPFAM; SSF55957; SSF55957; 1. DR TIGRFAMs; TIGR01455; glmM; 1. DR PROSITE; PS00710; PGM_PMM; 1. PE 1: Evidence at protein level; KW Complete proteome; Isomerase; Magnesium; Metal-binding; KW Phosphoprotein; Reference proteome. FT CHAIN 1 445 Phosphoglucosamine mutase. FT /FTId=PRO_0000147899. FT ACT_SITE 99 99 Phosphoserine intermediate. FT {ECO:0000250}. FT METAL 99 99 Magnesium; via phosphate group. FT {ECO:0000250}. FT METAL 242 242 Magnesium. {ECO:0000250}. FT METAL 244 244 Magnesium. {ECO:0000250}. FT METAL 246 246 Magnesium. {ECO:0000250}. FT MOD_RES 99 99 Phosphoserine; by autocatalysis. FT {ECO:0000305|PubMed:10671448}. FT CONFLICT 124 124 K -> R (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 134 134 E -> G (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 146 146 V -> I (in Ref. 2; AAQ57666). FT {ECO:0000305}. FT CONFLICT 161 161 A -> V (in Ref. 2; AAQ57666). FT {ECO:0000305}. FT CONFLICT 216 216 D -> E (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 273 273 S -> T (in Ref. 2; AAQ57666). FT {ECO:0000305}. FT CONFLICT 282 282 V -> I (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 286 286 N -> S (in Ref. 2; AAQ57666). FT {ECO:0000305}. FT CONFLICT 318 318 Q -> R (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 359 359 Q -> L (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 364 364 A -> R (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 374 374 S -> N (in Ref. 1 and 2). {ECO:0000305}. FT CONFLICT 393 393 S -> N (in Ref. 1; AAA25018). FT {ECO:0000305}. FT CONFLICT 431 431 S -> L (in Ref. 2; AAQ57666). FT {ECO:0000305}. SQ SEQUENCE 445 AA; 49086 MW; C0A52D904FFDAF20 CRC64; MKIFGTDGVR GKAGVKLTPM FVMRLGIAAG LYFKKHSQTN KILIGKDTRK SGYMVENALV SALTSIGYNV IQIGPMPTPA IAFLTEDMRC DAGIMISASH NPFEDNGIKF FNSYGYKLKE EEEKAIEEIF HDEELLHSSY KVGESVGSAK RIDDVIGRYI AHLKHSFPKH LNLQSLRIVL DTANGAAYKV APVVFSELGA DVLVINDEPN GCNINDQCGA LHPNQLSQEV KKYRADLGFA FDGDADRLVV VDNLGNIVHG DKLLGVLGVY QKSKNALSSQ AVVATNMSNL ALKEYLKSQD LELKHCAIGD KFVSECMQLN KANFGGEQSG HIIFSDYAKT GDGLVCALQV SALVLESKQV SSVALNPFEL YPQSLVNLNV QKKPPLESLK GYSALLKELD KLEIRHLIRY SGTENKLRIL LEAKDEKLLE SKMQELKEFF EGHLC // ID GLMS_HELPY Reviewed; 597 AA. AC O26060; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 3. DT 11-NOV-2015, entry version 103. DE RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000255|HAMAP-Rule:MF_00164}; DE EC=2.6.1.16 {ECO:0000255|HAMAP-Rule:MF_00164}; DE AltName: Full=D-fructose-6-phosphate amidotransferase {ECO:0000255|HAMAP-Rule:MF_00164}; DE AltName: Full=GFAT {ECO:0000255|HAMAP-Rule:MF_00164}; DE AltName: Full=Glucosamine-6-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00164}; DE AltName: Full=Hexosephosphate aminotransferase {ECO:0000255|HAMAP-Rule:MF_00164}; DE AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000255|HAMAP-Rule:MF_00164}; GN Name=glmS {ECO:0000255|HAMAP-Rule:MF_00164}; GN OrderedLocusNames=HP_1532; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the first step in hexosamine metabolism, CC converting fructose-6P into glucosamine-6P using glutamine as a CC nitrogen source. {ECO:0000255|HAMAP-Rule:MF_00164}. CC -!- CATALYTIC ACTIVITY: L-glutamine + D-fructose 6-phosphate = L- CC glutamate + D-glucosamine 6-phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00164}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00164}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00164}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-2 domain. CC {ECO:0000255|HAMAP-Rule:MF_00164}. CC -!- SIMILARITY: Contains 2 SIS domains. {ECO:0000255|HAMAP- CC Rule:MF_00164}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08570.1; -; Genomic_DNA. DR PIR; D64711; D64711. DR RefSeq; NP_208322.1; NC_000915.1. DR RefSeq; WP_000334435.1; NC_018939.1. DR ProteinModelPortal; O26060; -. DR STRING; 85962.HP1532; -. DR MEROPS; C44.971; -. DR PaxDb; O26060; -. DR PRIDE; O26060; -. DR EnsemblBacteria; AAD08570; AAD08570; HP_1532. DR GeneID; 899758; -. DR KEGG; heo:C694_07935; -. DR KEGG; hpy:HP1532; -. DR PATRIC; 20594485; VBIHelPyl33062_1610. DR eggNOG; ENOG4105C46; Bacteria. DR eggNOG; COG0449; LUCA. DR KO; K00820; -. DR OMA; LNNIENM; -. DR OrthoDB; EOG6KT2Q1; -. DR BioCyc; HPY:HP1532-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro. DR GO; GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:1901137; P:carbohydrate derivative biosynthetic process; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.20.10; -; 1. DR HAMAP; MF_00164; GlmS; 1. DR InterPro; IPR017932; GATase_2_dom. DR InterPro; IPR005855; GlmS_trans. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR001347; SIS. DR PANTHER; PTHR10937:SF0; PTHR10937:SF0; 1. DR Pfam; PF01380; SIS; 2. DR SUPFAM; SSF56235; SSF56235; 1. DR TIGRFAMs; TIGR01135; glmS; 1. DR PROSITE; PS51278; GATASE_TYPE_2; 1. DR PROSITE; PS51464; SIS; 2. PE 3: Inferred from homology; KW Aminotransferase; Complete proteome; Cytoplasm; KW Glutamine amidotransferase; Reference proteome; Repeat; Transferase. FT INIT_MET 1 1 Removed. {ECO:0000255|HAMAP- FT Rule:MF_00164}. FT CHAIN 2 597 Glutamine--fructose-6-phosphate FT aminotransferase [isomerizing]. FT /FTId=PRO_0000135340. FT DOMAIN 2 218 Glutamine amidotransferase type-2. FT {ECO:0000255|HAMAP-Rule:MF_00164}. FT DOMAIN 276 416 SIS 1. {ECO:0000255|HAMAP-Rule:MF_00164}. FT DOMAIN 449 587 SIS 2. {ECO:0000255|HAMAP-Rule:MF_00164}. FT ACT_SITE 2 2 Nucleophile; for GATase activity. FT {ECO:0000255|HAMAP-Rule:MF_00164}. FT ACT_SITE 592 592 For Fru-6P isomerization activity. FT {ECO:0000255|HAMAP-Rule:MF_00164}. SQ SEQUENCE 597 AA; 67071 MW; AA9E6E29D1B903C9 CRC64; MCGIVGYIGD SEKKSVLLEG LKELEYRGYD SAGLAVLSND RLEVFKTQGK LENLKLELKN KEFLDFGVSI AHTRWATHGK PSSANAHPHF TENLALVHNG IIENYASLKK ELENKGHAFL SQTDTEVIAH LLEETLKSES DLLKAFEKSI SLLKGSYAIL MLHKRAKESL FYAKSSSPLV VGKGKEGVFF ASSLSVLAPK VDQFVILEEN SVGRISLENF KDLNNIENMK DYAFEDKDYS KGNFRNYLEK EIYEQHSSLL ECLEGRLEAL SVYCEIDPEF LKNVSEITLC SCGSSYHASL ASVYLFERLA KIRARAILAS EYRYAHFKSN PNELFIAISQ SGETADTLEA LKLAKAQGLK TISLCNAPFS MMSRISDHTL LIRAGVERSV ASTKAFSSQV MLLWLLSVYL GKQLGTISKE EERIQAKNML NSVNAMKVEP KLHEKIKRLS KRYLHGHGFF YIGRDVFYPL ALEGALKLKE ISYLHAEGYA SAEMKHGPIA LVDSNLFTIA LLSKHLLFDK TKSNIEELSA RDSTICVLSS EILEIADDFI QLEESESYME EFFRMNLAVQ LLALEIAMRL NHDVDHPRNL AKSVTVE // ID GLYA_HELPY Reviewed; 416 AA. AC P56089; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; DE Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051}; DE Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051}; DE EC=2.1.2.1 {ECO:0000255|HAMAP-Rule:MF_00051}; GN Name=glyA {ECO:0000255|HAMAP-Rule:MF_00051}; GN OrderedLocusNames=HP_0183; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible interconversion of serine and CC glycine with tetrahydrofolate (THF) serving as the one-carbon CC carrier. This reaction serves as the major source of one-carbon CC groups required for the biosynthesis of purines, thymidylate, CC methionine, and other important biomolecules. Also exhibits THF- CC independent aldolase activity toward beta-hydroxyamino acids, CC producing glycine and aldehydes, via a retro-aldol mechanism. CC {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + glycine + CC H(2)O = tetrahydrofolate + L-serine. {ECO:0000255|HAMAP- CC Rule:MF_00051}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00051}; CC -!- PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. CC {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- PATHWAY: Amino-acid biosynthesis; glycine biosynthesis; glycine CC from L-serine: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SIMILARITY: Belongs to the SHMT family. {ECO:0000255|HAMAP- CC Rule:MF_00051}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07252.1; -; Genomic_DNA. DR PIR; G64542; G64542. DR RefSeq; NP_206982.1; NC_000915.1. DR RefSeq; WP_000323092.1; NC_018939.1. DR ProteinModelPortal; P56089; -. DR SMR; P56089; 7-410. DR DIP; DIP-3405N; -. DR IntAct; P56089; 1. DR MINT; MINT-169974; -. DR STRING; 85962.HP0183; -. DR PaxDb; P56089; -. DR PRIDE; P56089; -. DR EnsemblBacteria; AAD07252; AAD07252; HP_0183. DR GeneID; 899151; -. DR KEGG; heo:C694_00910; -. DR KEGG; hpy:HP0183; -. DR PATRIC; 20591589; VBIHelPyl33062_0194. DR eggNOG; ENOG4105C65; Bacteria. DR eggNOG; COG0112; LUCA. DR KO; K00600; -. DR OMA; MLIDYEQ; -. DR OrthoDB; EOG6Z0QB2; -. DR BioCyc; HPY:HP0183-MONOMER; -. DR UniPathway; UPA00193; -. DR UniPathway; UPA00288; UER01023. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004372; F:glycine hydroxymethyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019264; P:glycine biosynthetic process from serine; IEA:UniProtKB-HAMAP. DR GO; GO:0035999; P:tetrahydrofolate interconversion; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR HAMAP; MF_00051; SHMT; 1. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR InterPro; IPR001085; Ser_HO-MeTrfase. DR InterPro; IPR019798; Ser_HO-MeTrfase_PLP_BS. DR PANTHER; PTHR11680; PTHR11680; 1. DR Pfam; PF00464; SHMT; 1. DR PIRSF; PIRSF000412; SHMT; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00096; SHMT; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW One-carbon metabolism; Pyridoxal phosphate; Reference proteome; KW Transferase. FT CHAIN 1 416 Serine hydroxymethyltransferase. FT /FTId=PRO_0000113586. FT REGION 122 124 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT REGION 350 352 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 32 32 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 52 52 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 54 54 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 61 61 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 62 62 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 96 96 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 118 118 Substrate; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00051}. FT BINDING 172 172 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 200 200 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 225 225 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 232 232 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 258 258 Pyridoxal phosphate; via amide nitrogen FT and carbonyl oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 358 358 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT MOD_RES 226 226 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00051}. SQ SEQUENCE 416 AA; 45710 MW; 42BB0CD4433CD708 CRC64; MAYFLEQTDS EIFELIFEEY KRQNEHLEMI ASENYTFASV MEAMGSVLTN KYAEGYPNKR YYGGCEVVDK IESLAIERAK KLFNCQFANV QAHSGSQANN AVYHALLKPY DKILGMDLSC GGHLTHGAKV SLTGKHYQSF SYGVNLDGYI DYEEALKIAQ SVKPEIIVCG FSAYPREIDF KKFREIADEV GALLLGDIAH VAGLVVTGEH AHPFPHCHVV SSTTHKTLRG PRGGIILTND EEIAAKIDKA IFPGTQGGPL MHVIAAKAVG FKENLKPEFK AYAQLVKSNM QVLAKALKEK NHKLVSGGTS NHLLLMDFLD KPYSGKDADI ALGNAGITVN KNTIPGETRS PFVTSGIRIG SAALSARGMG AKEFEIIGNK ISDILNDINN VSLQLHVKEE LKAMVNQFPV YHQPIF // ID GMHA_HELPY Reviewed; 192 AA. AC O25528; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Phosphoheptose isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; DE EC=5.3.1.28 {ECO:0000255|HAMAP-Rule:MF_00067}; DE AltName: Full=Sedoheptulose 7-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; GN Name=gmhA {ECO:0000255|HAMAP-Rule:MF_00067}; GN OrderedLocusNames=HP_0857; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP BIOSYNTHESIS OF NUCLEOTIDE-ACTIVATED GLYCERO-MANNO-HEPTOSE. RX PubMed=12101286; RA Valvano M.A., Messner P., Kosma P.; RT "Novel pathways for biosynthesis of nucleotide-activated glycero- RT manno-heptose precursors of bacterial glycoproteins and cell surface RT polysaccharides."; RL Microbiology 148:1979-1989(2002). CC -!- FUNCTION: Catalyzes the isomerization of sedoheptulose 7-phosphate CC in D-glycero-D-manno-heptose 7-phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00067}. CC -!- CATALYTIC ACTIVITY: D-sedoheptulose 7-phosphate = D-glycero-D- CC manno-heptose 7-phosphate. {ECO:0000255|HAMAP-Rule:MF_00067}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00067}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00067}; CC -!- PATHWAY: Carbohydrate biosynthesis; D-glycero-D-manno-heptose 7- CC phosphate biosynthesis; D-glycero-alpha-D-manno-heptose 7- CC phosphate and D-glycero-beta-D-manno-heptose 7-phosphate from CC sedoheptulose 7-phosphate: step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_00067}. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS core CC biosynthesis. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_00067}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00067}. CC -!- MISCELLANEOUS: The reaction produces a racemic mixture of D- CC glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D- CC manno-heptose 7-phosphate. {ECO:0000255|HAMAP-Rule:MF_00067}. CC -!- SIMILARITY: Belongs to the SIS family. GmhA subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00067}. CC -!- SIMILARITY: Contains 1 SIS domain. {ECO:0000255|HAMAP- CC Rule:MF_00067}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07903.1; -; Genomic_DNA. DR PIR; A64627; A64627. DR RefSeq; NP_207651.1; NC_000915.1. DR RefSeq; WP_000566736.1; NC_018939.1. DR ProteinModelPortal; O25528; -. DR SMR; O25528; 4-188. DR DIP; DIP-3683N; -. DR IntAct; O25528; 1. DR MINT; MINT-4077758; -. DR STRING; 85962.HP0857; -. DR PaxDb; O25528; -. DR PRIDE; O25528; -. DR EnsemblBacteria; AAD07903; AAD07903; HP_0857. DR GeneID; 899386; -. DR KEGG; heo:C694_04390; -. DR KEGG; hpy:HP0857; -. DR PATRIC; 20593003; VBIHelPyl33062_0889. DR eggNOG; ENOG4105F55; Bacteria. DR eggNOG; COG0279; LUCA. DR KO; K03271; -. DR OMA; EMHILMI; -. DR OrthoDB; EOG6384PC; -. DR BioCyc; HPY:HP0857-MONOMER; -. DR UniPathway; UPA00041; UER00436. DR UniPathway; UPA00958; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro. DR GO; GO:0008968; F:D-sedoheptulose 7-phosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:2001061; P:D-glycero-D-manno-heptose 7-phosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009244; P:lipopolysaccharide core region biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00067; GmhA; 1. DR InterPro; IPR004515; Phosphoheptose_Isoase. DR InterPro; IPR001347; SIS. DR Pfam; PF13580; SIS_2; 1. DR TIGRFAMs; TIGR00441; gmhA; 1. DR PROSITE; PS51464; SIS; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism; Complete proteome; Cytoplasm; Isomerase; KW Lipopolysaccharide biosynthesis; Metal-binding; Reference proteome; KW Zinc. FT CHAIN 1 192 Phosphoheptose isomerase. FT /FTId=PRO_0000136532. FT DOMAIN 35 192 SIS. {ECO:0000255|HAMAP-Rule:MF_00067}. FT REGION 50 52 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00067}. FT REGION 92 93 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00067}. FT REGION 118 120 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00067}. FT METAL 59 59 Zinc. {ECO:0000255|HAMAP-Rule:MF_00067}. FT METAL 63 63 Zinc. {ECO:0000255|HAMAP-Rule:MF_00067}. FT METAL 170 170 Zinc. {ECO:0000255|HAMAP-Rule:MF_00067}. FT METAL 178 178 Zinc. {ECO:0000255|HAMAP-Rule:MF_00067}. FT BINDING 63 63 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00067}. FT BINDING 123 123 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00067}. FT BINDING 170 170 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00067}. SQ SEQUENCE 192 AA; 21102 MW; 0224D090E639B878 CRC64; MIDNLIKKEF LAHKEALEKS LEGLQEALKQ SVHLLIETLE NQGKILICGN GGSASDAQHF AAELTGRYKL ERKGLSAISL NTDISALTAI ANDYGYEEVF ARQVEALGVK NDVLIGISTS GNSKNVLKAY EKAKDLEMKT LSLAGRDGGK MKPLSDMALI VPSDDTPRIQ EMHILMIHIL CDCIERHFAH KN // ID GPMI_HELPY Reviewed; 491 AA. AC P56196; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 112. DE RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000255|HAMAP-Rule:MF_01038}; DE Short=BPG-independent PGAM {ECO:0000255|HAMAP-Rule:MF_01038}; DE Short=Phosphoglyceromutase {ECO:0000255|HAMAP-Rule:MF_01038}; DE Short=iPGM {ECO:0000255|HAMAP-Rule:MF_01038}; DE EC=5.4.2.12 {ECO:0000255|HAMAP-Rule:MF_01038}; GN Name=gpmI {ECO:0000255|HAMAP-Rule:MF_01038}; Synonyms=pgm; GN OrderedLocusNames=HP_0974; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP 3D-STRUCTURE MODELING. RA Prashanth K., Nath P.R.; RT "Theoretical model of 2,3-bisphosphoglycerate-independent RT phosphoglycerate mutase of helicobacter pylori."; RL Submitted (MAY-2003) to the PDB data bank. CC -!- FUNCTION: Catalyzes the interconversion of 2-phosphoglycerate and CC 3-phosphoglycerate. {ECO:0000255|HAMAP-Rule:MF_01038}. CC -!- CATALYTIC ACTIVITY: 2-phospho-D-glycerate = 3-phospho-D-glycerate. CC {ECO:0000255|HAMAP-Rule:MF_01038}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01038}; CC Note=Binds 2 manganese ions per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01038}; CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 3/5. {ECO:0000255|HAMAP- CC Rule:MF_01038}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01038}. CC -!- SIMILARITY: Belongs to the BPG-independent phosphoglycerate mutase CC family. {ECO:0000255|HAMAP-Rule:MF_01038}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08020.1; -; Genomic_DNA. DR PIR; F64641; F64641. DR RefSeq; NP_207765.1; NC_000915.1. DR RefSeq; WP_000057737.1; NC_018939.1. DR PDB; 1LNO; Model; -; A=3-491. DR PDBsum; 1LNO; -. DR ProteinModelPortal; P56196; -. DR DIP; DIP-3166N; -. DR IntAct; P56196; 1. DR MINT; MINT-172669; -. DR STRING; 85962.HP0974; -. DR PaxDb; P56196; -. DR PRIDE; P56196; -. DR EnsemblBacteria; AAD08020; AAD08020; HP_0974. DR GeneID; 899506; -. DR KEGG; heo:C694_05010; -. DR KEGG; hpy:HP0974; -. DR PATRIC; 20593263; VBIHelPyl33062_1013. DR eggNOG; ENOG4105CJI; Bacteria. DR eggNOG; COG0696; LUCA. DR KO; K15633; -. DR OMA; LHIATMT; -. DR OrthoDB; EOG6HJ22X; -. DR BioCyc; HPY:HP0974-MONOMER; -. DR UniPathway; UPA00109; UER00186. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0046537; F:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006007; P:glucose catabolic process; IEA:InterPro. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1450.10; -; 1. DR Gene3D; 3.40.720.10; -; 2. DR HAMAP; MF_01038; GpmI; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR011258; BPG-indep_PGM_N. DR InterPro; IPR006124; Metalloenzyme. DR InterPro; IPR005995; Pgm_bpd_ind. DR Pfam; PF06415; iPGM_N; 1. DR Pfam; PF01676; Metalloenzyme; 1. DR PIRSF; PIRSF001492; IPGAM; 1. DR SUPFAM; SSF53649; SSF53649; 2. DR SUPFAM; SSF64158; SSF64158; 1. DR TIGRFAMs; TIGR01307; pgm_bpd_ind; 1. PE 3: Inferred from homology; KW 3D-structure; Complete proteome; Glycolysis; Isomerase; Manganese; KW Metal-binding; Reference proteome. FT CHAIN 1 491 2,3-bisphosphoglycerate-independent FT phosphoglycerate mutase. FT /FTId=PRO_0000212154. FT REGION 147 148 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT REGION 247 250 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT ACT_SITE 61 61 Phosphoserine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01038}. FT METAL 11 11 Manganese 2. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 61 61 Manganese 2. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 386 386 Manganese 1. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 390 390 Manganese 1. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 427 427 Manganese 2. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 428 428 Manganese 2. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT METAL 445 445 Manganese 1. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT BINDING 118 118 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT BINDING 177 177 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT BINDING 183 183 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01038}. FT BINDING 320 320 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01038}. SQ SEQUENCE 491 AA; 54788 MW; F72F8CDA04EA9D6D CRC64; MAQKTLLIIT DGIGYRKDSD HNAFFHAKKP TYDLMFKTLP YSLIDTHGLS VGLPKGQMGN SEVGHMCIGA GRVLYQDLVK ISLSLQNDEL KNNPAFLNTI QKSPVVHLMG LMSDGGVHSH IEHFIALALE CEKSHKKVCL HLITDGRDVA PKSALTYLKQ MQNICNESIQ IATISGRFYA MDRDKRFERI ELAYHSLMGL NHTPLSPSEY IQSQYDKNIT DEFIMPACFK NYCGMQDDES FIFINFRNDR AREIVSALGQ KQFSGFKRQV FKKLHIATMT PYDNTFPYPV LFPKESVQNT LAEVVSQHNL TQSHIAETEK YAHVTFFING GVETPFKNEN RVLIQSPKVT TYDLKPEMSA KEVTLAVLEQ MKLGTDLIIV NFANGDMVGH TGNFEASVKA VEAVDACLGE ILSLAKKLDY AMLLTSDHGN CERMKDENQN PLTNHTAGSV YCFVLGDGVK SIKNGALNNI ASSVLKLMGL KAPATMDEPL F // ID GLNA_HELPY Reviewed; 481 AA. AC P94845; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-MAY-2016, entry version 98. DE RecName: Full=Glutamine synthetase; DE EC=6.3.1.2; DE AltName: Full=Glutamate--ammonia ligase; GN Name=glnA; OrderedLocusNames=HP_0512; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 367-481. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RA Clairoux N., Boissinot M.; RT "Sequence of the dihydrodipicolinate reductase gene (dapB) from RT Helicobacter pylori and complementation in Escherichia coli."; RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamate + NH(3) = ADP + phosphate + CC L-glutamine. CC -!- SUBUNIT: Oligomer of 12 subunits arranged in the form of two CC hexagons. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. CC -!- SIMILARITY: Belongs to the glutamine synthetase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07575.1; -; Genomic_DNA. DR EMBL; U75328; AAB39719.1; -; Genomic_DNA. DR PIR; H64583; H64583. DR RefSeq; NP_207309.1; NC_000915.1. DR RefSeq; WP_000637150.1; NC_018939.1. DR ProteinModelPortal; P94845; -. DR DIP; DIP-3543N; -. DR IntAct; P94845; 14. DR MINT; MINT-172713; -. DR STRING; 85962.HP0512; -. DR PaxDb; P94845; -. DR PRIDE; P94845; -. DR EnsemblBacteria; AAD07575; AAD07575; HP_0512. DR GeneID; 900049; -. DR KEGG; heo:C694_02630; -. DR KEGG; hpy:HP0512; -. DR PATRIC; 20592299; VBIHelPyl33062_0538. DR eggNOG; ENOG4105C5F; Bacteria. DR eggNOG; COG0174; LUCA. DR KO; K01915; -. DR OMA; KVLNQVG; -. DR OrthoDB; EOG6B360N; -. DR BioCyc; HPY:HP0512-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004356; F:glutamate-ammonia ligase activity; IEA:UniProtKB-EC. DR GO; GO:0006542; P:glutamine biosynthetic process; IEA:InterPro. DR GO; GO:0009399; P:nitrogen fixation; IEA:InterPro. DR Gene3D; 3.10.20.70; -; 1. DR Gene3D; 3.30.590.10; -; 1. DR InterPro; IPR008147; Gln_synt_b-grasp. DR InterPro; IPR014746; Gln_synth/guanido_kin_cat_dom. DR InterPro; IPR008146; Gln_synth_cat_dom. DR InterPro; IPR027303; Gln_synth_gly_rich_site. DR InterPro; IPR004809; Gln_synth_I. DR Pfam; PF00120; Gln-synt_C; 1. DR Pfam; PF03951; Gln-synt_N; 1. DR SMART; SM01230; Gln-synt_C; 1. DR SUPFAM; SSF54368; SSF54368; 1. DR TIGRFAMs; TIGR00653; GlnA; 1. DR PROSITE; PS00181; GLNA_ATP; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Ligase; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 481 Glutamine synthetase. FT /FTId=PRO_0000153239. FT CONFLICT 396 396 I -> M (in Ref. 2; AAB39719). FT {ECO:0000305}. FT CONFLICT 443 443 S -> G (in Ref. 2; AAB39719). FT {ECO:0000305}. SQ SEQUENCE 481 AA; 54514 MW; 87EDFEB540723D3E CRC64; MIVRTQNSES KIKEFFEFCK ENEVEFVDFR FSDIKGTWNH IAYSFGALTH GMLKEGIPFD ASCFKGWQGI EHSDMILTPD LVRYFIDPFS ADVSVVVFCD VYDVYKNQPY EKCPRSIAKK ALQHLKDSGL GDVAYFGAEN EFFIFDSIKI KDASNSQYYE VDSEEGEWNR DRSFENGVNF GHRPGKQGGY MPVPPTDTMM DIRTEIVKVL NQVGLETFVV HHEVAQAQGE VGVKFGDLVE AADNVQKLKY VVKMVAHLNG KTATFMPKPL YGDNGSGMHT HVSVWKNNEN LFSGETYKGL SEFALHFLGG VLRHARGLAA FTNASTNSYK RLIPGYEAPS ILTYSANNRS ASVRIPYGIS KNSARFEFRF PDSSSNPYLA FAAILMAGMD GVKNKIDPGE AMDINLFKLT LDEIREKGIK QMPHTLRRSL EEMLADKQYL KESQVFSEEF IQAYQSLKFN AEVFPWESKP HPFEFITTYS C // ID GLUP_HELPY Reviewed; 407 AA. AC O25788; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Putative glucose/galactose transporter; GN Name=gluP; OrderedLocusNames=HP_1174; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Intake of glucose and galactose. {ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the major facilitator superfamily. FHS CC transporter (TC 2.A.1.7) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08219.1; -; Genomic_DNA. DR PIR; F64666; F64666. DR RefSeq; NP_207965.1; NC_000915.1. DR RefSeq; WP_001174195.1; NC_018939.1. DR ProteinModelPortal; O25788; -. DR IntAct; O25788; 1. DR STRING; 85962.HP1174; -. DR TCDB; 2.A.1.7.7; the major facilitator superfamily (mfs). DR PaxDb; O25788; -. DR PRIDE; O25788; -. DR EnsemblBacteria; AAD08219; AAD08219; HP_1174. DR GeneID; 899934; -. DR KEGG; heo:C694_06065; -. DR KEGG; hpy:HP1174; -. DR PATRIC; 20593701; VBIHelPyl33062_1229. DR eggNOG; ENOG4105EDR; Bacteria. DR eggNOG; COG0738; LUCA. DR KO; K02429; -. DR OMA; FESCIFP; -. DR OrthoDB; EOG661H8H; -. DR BioCyc; HPY:HP1174-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009276; C:Gram-negative-bacterium-type cell wall; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005354; F:galactose transmembrane transporter activity; IEA:InterPro. DR GO; GO:0005355; F:glucose transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR005964; Glc/Gal_transptr_bac. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR TIGRFAMs; TIGR01272; gluP; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Sugar transport; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 407 Putative glucose/galactose transporter. FT /FTId=PRO_0000094506. FT TRANSMEM 11 31 Helical. {ECO:0000255}. FT TRANSMEM 47 67 Helical. {ECO:0000255}. FT TRANSMEM 70 90 Helical. {ECO:0000255}. FT TRANSMEM 96 116 Helical. {ECO:0000255}. FT TRANSMEM 139 159 Helical. {ECO:0000255}. FT TRANSMEM 180 200 Helical. {ECO:0000255}. FT TRANSMEM 225 245 Helical. {ECO:0000255}. FT TRANSMEM 263 283 Helical. {ECO:0000255}. FT TRANSMEM 300 320 Helical. {ECO:0000255}. FT TRANSMEM 321 341 Helical. {ECO:0000255}. FT TRANSMEM 349 369 Helical. {ECO:0000255}. FT TRANSMEM 378 398 Helical. {ECO:0000255}. SQ SEQUENCE 407 AA; 43950 MW; 447B5CCF6117D712 CRC64; MQKTSNTLAL GSLTALFFLM GFITVLNDIL IPHLKPIFDL TYFEASLIQF CFFGAYFIMG GVFGNVISKI GYPFGVVLGF VITATGCALF YPAAHFGSYG FFLGALFILA SGIVCLQTAG NPFVTLLSKG KEARNLVLVQ AFNSLGTTLG PIFGSLLIFS TTKMGDNASL IDKLADAKSV QMPYLGLAVF SLLLALIMYL LKLPDVEKEM PKETTQKSLF SHKHFVFGAL GIFFYVGGEV AIGSFLVLSF EKLLNLDSQS SAHYLVYYWG GAMVGRFLGS VLMNKIAPNK YLAFNALSSI VLIALAIIIG GKIALFALTF VGFFNSIMFP TIFSLATLNL GHLTSKASGV ISMAIVGGAL IPPIQGAVTD MLTATESNLL YAYGVPLLCY FYILFFALKG YKQEENS // ID GRPE_HELPY Reviewed; 189 AA. AC P55970; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; DE AltName: Full=HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; GN Name=grpE {ECO:0000255|HAMAP-Rule:MF_01151}; GN OrderedLocusNames=HP_0110; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates actively in the response to hyperosmotic CC and heat shock by preventing the aggregation of stress-denatured CC proteins, in association with DnaK and GrpE. It is the nucleotide CC exchange factor for DnaK and may function as a thermosensor. CC Unfolded proteins bind initially to DnaJ; upon interaction with CC the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting CC in the formation of a stable complex. GrpE releases ADP from DnaK; CC ATP binding to DnaK triggers the release of the substrate protein, CC thus completing the reaction cycle. Several rounds of ATP- CC dependent interactions between DnaJ, DnaK and GrpE are required CC for fully efficient folding. {ECO:0000255|HAMAP-Rule:MF_01151}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01151}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01151}. CC -!- SIMILARITY: Belongs to the GrpE family. {ECO:0000255|HAMAP- CC Rule:MF_01151}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07179.1; -; Genomic_DNA. DR PIR; F64533; F64533. DR RefSeq; NP_206910.1; NC_000915.1. DR RefSeq; WP_000650844.1; NC_000915.1. DR ProteinModelPortal; P55970; -. DR IntAct; P55970; 1. DR STRING; 85962.HP0110; -. DR PaxDb; P55970; -. DR PRIDE; P55970; -. DR EnsemblBacteria; AAD07179; AAD07179; HP_0110. DR GeneID; 899121; -. DR KEGG; hpy:HP0110; -. DR PATRIC; 20591435; VBIHelPyl33062_0117. DR eggNOG; ENOG4105K90; Bacteria. DR eggNOG; COG0576; LUCA. DR KO; K03687; -. DR OMA; KEPEFCE; -. DR OrthoDB; EOG6FJNJ9; -. DR BioCyc; HPY:HP0110-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000774; F:adenyl-nucleotide exchange factor activity; IEA:InterPro. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 2.30.22.10; -; 1. DR Gene3D; 3.90.20.20; -; 1. DR HAMAP; MF_01151; GrpE; 1. DR InterPro; IPR000740; GrpE. DR InterPro; IPR013805; GrpE_coiled_coil. DR InterPro; IPR009012; GrpE_head. DR PANTHER; PTHR21237; PTHR21237; 1. DR Pfam; PF01025; GrpE; 1. DR PRINTS; PR00773; GRPEPROTEIN. DR SUPFAM; SSF51064; SSF51064; 1. DR PROSITE; PS01071; GRPE; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Cytoplasm; Reference proteome; KW Stress response. FT CHAIN 1 189 Protein GrpE. FT /FTId=PRO_0000113795. SQ SEQUENCE 189 AA; 22040 MW; 62C0991B684F0C2D CRC64; MKDEHNQEHD HLSQKEPEFC EKACKEQQYE EKQEAGEKEG EIKEDFELKY KEMHEKYLRV HADFENVKKR LERDKSMALE YAYEKIALDL LPVIDALLGA HKSAAEEDKE SALTKGLELT MEKLHEVLAR HGIEGIECLE EFDPHFHNAI MQVKSEEKEN GKIVQVLQQG YKYKGRVLRP AMVSIAKND // ID GMHBB_HELPY Reviewed; 173 AA. AC O25531; DT 27-SEP-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase; DE EC=3.1.3.82; DE AltName: Full=D,D-heptose 1,7-bisphosphate phosphatase; DE Short=HBP phosphatase; GN Name=gmhB; OrderedLocusNames=HP_0860; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP BIOSYNTHESIS OF NUCLEOTIDE-ACTIVATED GLYCERO-MANNO-HEPTOSE. RX PubMed=12101286; RA Valvano M.A., Messner P., Kosma P.; RT "Novel pathways for biosynthesis of nucleotide-activated glycero- RT manno-heptose precursors of bacterial glycoproteins and cell surface RT polysaccharides."; RL Microbiology 148:1979-1989(2002). CC -!- FUNCTION: Converts the D-glycero-beta-D-manno-heptose 1,7- CC bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1- CC phosphate by removing the phosphate group at the C-7 position. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: D-glycero-beta-D-manno-heptose 1,7- CC bisphosphate + H(2)O = D-glycero-beta-D-manno-heptose 1-phosphate CC + phosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC -!- PATHWAY: Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D- CC manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose CC from D-glycero-beta-D-manno-heptose 7-phosphate: step 2/4. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS core CC biosynthesis. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the GmhB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07906.1; -; Genomic_DNA. DR PIR; D64627; D64627. DR RefSeq; NP_207654.1; NC_000915.1. DR RefSeq; WP_001095387.1; NC_018939.1. DR ProteinModelPortal; O25531; -. DR STRING; 85962.HP0860; -. DR PaxDb; O25531; -. DR PRIDE; O25531; -. DR DNASU; 899389; -. DR EnsemblBacteria; AAD07906; AAD07906; HP_0860. DR GeneID; 899389; -. DR KEGG; heo:C694_04405; -. DR KEGG; hpy:HP0860; -. DR PATRIC; 20593009; VBIHelPyl33062_0892. DR eggNOG; ENOG4108ZI0; Bacteria. DR eggNOG; COG0241; LUCA. DR KO; K03273; -. DR OMA; SFMIGDK; -. DR OrthoDB; EOG6QG8GT; -. DR BioCyc; HPY:HP0860-MONOMER; -. DR BRENDA; 3.1.3.82; 2604. DR UniPathway; UPA00356; UER00438. DR UniPathway; UPA00958; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0034200; F:D,D-heptose 1,7-bisphosphate phosphatase activity; ISS:UniProtKB. DR GO; GO:0000287; F:magnesium ion binding; ISS:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; ISS:UniProtKB. DR GO; GO:0097171; P:ADP-L-glycero-beta-D-manno-heptose biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0016311; P:dephosphorylation; ISS:GOC. DR GO; GO:0009244; P:lipopolysaccharide core region biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.1000; -; 1. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006549; HAD-SF_hydro_IIIA. DR InterPro; IPR004446; Heptose_bisP_phosphatase. DR InterPro; IPR006543; Histidinol-phos. DR PIRSF; PIRSF004682; GmhB; 1. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR00213; GmhB_yaeD; 1. DR TIGRFAMs; TIGR01662; HAD-SF-IIIA; 1. DR TIGRFAMs; TIGR01656; Histidinol-ppas; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism; Complete proteome; Cytoplasm; Hydrolase; KW Lipopolysaccharide biosynthesis; Magnesium; Metal-binding; KW Reference proteome; Zinc. FT CHAIN 1 173 D-glycero-beta-D-manno-heptose-1,7- FT bisphosphate 7-phosphatase. FT /FTId=PRO_0000209395. FT REGION 10 12 Substrate binding. {ECO:0000250}. FT REGION 18 21 Substrate binding. {ECO:0000250}. FT REGION 52 55 Substrate binding. {ECO:0000250}. FT REGION 103 104 Substrate binding. {ECO:0000250}. FT ACT_SITE 10 10 Nucleophile. {ECO:0000250}. FT ACT_SITE 12 12 Proton donor. {ECO:0000250}. FT METAL 10 10 Magnesium. {ECO:0000250}. FT METAL 12 12 Magnesium; via carbonyl oxygen. FT {ECO:0000250}. FT METAL 92 92 Zinc. {ECO:0000250}. FT METAL 94 94 Zinc; via amide nitrogen. {ECO:0000250}. FT METAL 100 100 Zinc. {ECO:0000250}. FT METAL 102 102 Zinc. {ECO:0000250}. FT METAL 129 129 Magnesium. {ECO:0000250}. FT METAL 130 130 Magnesium. {ECO:0000250}. FT BINDING 130 130 Substrate. {ECO:0000250}. FT SITE 52 52 Stabilizes the phosphoryl group. FT {ECO:0000250}. FT SITE 103 103 Contributes to substrate recognition. FT {ECO:0000250}. FT SITE 104 104 Stabilizes the phosphoryl group. FT {ECO:0000250}. SQ SEQUENCE 173 AA; 19994 MW; 5DAE8211E681BF8E CRC64; MNTNKALFLD RDGIINIDKG YVSQKEDFEF QKGIFELLKH AKSLGYKLLL ITNQSGINRG YYTLKDFEQL TQYLQESLFK ELGFNLDGIY FCRHAPEENC ACRKPKPSLI LQAAKEHQIC LEQSFMIGDK ESDMLAGLNA KVKNNLLLIQ NPLKTPHSWI QCKDFKEMID LIK // ID GTPC1_HELPY Reviewed; 243 AA. AC O25613; DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=GTP cyclohydrolase 1 type 2; DE EC=3.5.4.16 {ECO:0000269|PubMed:23825549}; DE AltName: Full=GTP cyclohydrolase I; GN OrderedLocusNames=HP_0959; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, CATALYTIC ACTIVITY, RP SUBSTRATE SPECIFICITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Converts GTP to dihydroneopterin triphosphate. Is not CC active with GDP, GMP, ATP, CTP or UTP as substrate. CC {ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: GTP + H(2)O = formate + 2-amino-4-hydroxy-6- CC (erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate. CC {ECO:0000269|PubMed:23825549}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.040 mM for GTP {ECO:0000269|PubMed:23825549}; CC Note=kcat is 2593 min(-1). {ECO:0000269|PubMed:23825549}; CC pH dependence: CC Optimum pH is about 4.0. Activity strongly decreases above this CC value. {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is about 35 degrees Celsius. Activity CC strongly decreases above this value. CC {ECO:0000269|PubMed:23825549}; CC -!- PATHWAY: Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate CC biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step CC 1/1. CC -!- SUBUNIT: Homohexamer. {ECO:0000250|UniProtKB:P0AFP6}. CC -!- SIMILARITY: Belongs to the GTP cyclohydrolase I type 2/NIF3 CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08001.1; -; Genomic_DNA. DR PIR; G64639; G64639. DR RefSeq; NP_207751.1; NC_000915.1. DR RefSeq; WP_001229797.1; NC_018939.1. DR ProteinModelPortal; O25613; -. DR IntAct; O25613; 1. DR STRING; 85962.HP0959; -. DR PaxDb; O25613; -. DR PRIDE; O25613; -. DR EnsemblBacteria; AAD08001; AAD08001; HP_0959. DR GeneID; 899492; -. DR KEGG; heo:C694_04940; -. DR KEGG; hpy:HP0959; -. DR PATRIC; 20593231; VBIHelPyl33062_0997. DR eggNOG; ENOG4105EGD; Bacteria. DR eggNOG; COG0327; LUCA. DR OMA; YSHCFFA; -. DR OrthoDB; EOG6D8BD1; -. DR BioCyc; HPY:HP0959-MONOMER; -. DR UniPathway; UPA00848; UER00151. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003934; F:GTP cyclohydrolase I activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0035998; P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR InterPro; IPR002678; GTP_cyclohydrolase_I/Nif3. DR PANTHER; PTHR13799; PTHR13799; 1. DR Pfam; PF01784; NIF3; 1. DR SUPFAM; SSF102705; SSF102705; 1. DR TIGRFAMs; TIGR00486; YbgI_SA1388; 1. PE 1: Evidence at protein level; KW Complete proteome; GTP-binding; Hydrolase; Metal-binding; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 243 GTP cyclohydrolase 1 type 2. FT /FTId=PRO_0000147311. FT METAL 63 63 Divalent metal cation 1. FT {ECO:0000250|UniProtKB:P0AFP6}. FT METAL 64 64 Divalent metal cation 2. FT {ECO:0000250|UniProtKB:P0AFP6}. FT METAL 102 102 Divalent metal cation 1. FT {ECO:0000250|UniProtKB:P0AFP6}. FT METAL 209 209 Divalent metal cation 2. FT {ECO:0000250|UniProtKB:P0AFP6}. FT METAL 213 213 Divalent metal cation 1. FT {ECO:0000250|UniProtKB:P0AFP6}. FT METAL 213 213 Divalent metal cation 2. FT {ECO:0000250|UniProtKB:P0AFP6}. SQ SEQUENCE 243 AA; 26798 MW; 499D006A957F9AE5 CRC64; MALVKEVLVV LNRLSPFELQ ESWDNSGLNV GSENSEFSEI VACLEITLKI ALNAPQNALI ITHHPLIFKP LKTLNDEIYP GNILKILIQK NVSVISMHTN FDKTHLNKHF AHALLEFDGL VEKGLMLVKE NANIEFDALV KKIKSSLGVG SLACVKSSQT IKDLAFVCGS GASMFSSLKA QSCLITGDVK YHDAMIAQSL GISLIDATHY YSERGFALIV AEILHSFNYL VTIENFKNPL QII // ID GPDA_HELPY Reviewed; 312 AA. AC O25614; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 112. DE RecName: Full=Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000255|HAMAP-Rule:MF_00394}; DE EC=1.1.1.94 {ECO:0000255|HAMAP-Rule:MF_00394}; DE AltName: Full=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00394}; GN Name=gpsA {ECO:0000255|HAMAP-Rule:MF_00394}; GN OrderedLocusNames=HP_0961; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: sn-glycerol 3-phosphate + NAD(P)(+) = CC glycerone phosphate + NAD(P)H. {ECO:0000255|HAMAP-Rule:MF_00394}. CC -!- PATHWAY: Membrane lipid metabolism; glycerophospholipid CC metabolism. {ECO:0000255|HAMAP-Rule:MF_00394}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00394}. CC -!- SIMILARITY: Belongs to the NAD-dependent glycerol-3-phosphate CC dehydrogenase family. {ECO:0000255|HAMAP-Rule:MF_00394}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08003.1; -; Genomic_DNA. DR PIR; A64640; A64640. DR RefSeq; NP_207753.1; NC_000915.1. DR RefSeq; WP_000401714.1; NC_018939.1. DR ProteinModelPortal; O25614; -. DR DIP; DIP-3377N; -. DR IntAct; O25614; 4. DR MINT; MINT-175509; -. DR STRING; 85962.HP0961; -. DR PaxDb; O25614; -. DR PRIDE; O25614; -. DR EnsemblBacteria; AAD08003; AAD08003; HP_0961. DR GeneID; 899494; -. DR KEGG; heo:C694_04950; -. DR KEGG; hpy:HP0961; -. DR PATRIC; 20593235; VBIHelPyl33062_0999. DR eggNOG; ENOG4105CSF; Bacteria. DR eggNOG; COG0240; LUCA. DR KO; K00057; -. DR OMA; ARQYGPY; -. DR OrthoDB; EOG6JDWF4; -. DR BioCyc; HPY:HP0961-MONOMER; -. DR UniPathway; UPA00940; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009331; C:glycerol-3-phosphate dehydrogenase complex; IEA:InterPro. DR GO; GO:0047952; F:glycerol-3-phosphate dehydrogenase [NAD(P)+] activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004367; F:glycerol-3-phosphate dehydrogenase [NAD+] activity; IEA:UniProtKB-EC. DR GO; GO:0036439; F:glycerol-3-phosphate dehydrogenase [NADP+] activity; IEA:UniProtKB-EC. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0046167; P:glycerol-3-phosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0046168; P:glycerol-3-phosphate catabolic process; IEA:InterPro. DR GO; GO:0006650; P:glycerophospholipid metabolic process; IEA:UniProtKB-UniPathway. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1040.10; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00394; NAD_Glyc3P_dehydrog; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR013328; 6PGD_dom_2. DR InterPro; IPR006168; G3P_DH_NAD-dep. DR InterPro; IPR006109; G3P_DH_NAD-dep_C. DR InterPro; IPR011128; G3P_DH_NAD-dep_N. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF07479; NAD_Gly3P_dh_C; 1. DR Pfam; PF01210; NAD_Gly3P_dh_N; 1. DR PIRSF; PIRSF000114; Glycerol-3-P_dh; 1. DR PRINTS; PR00077; GPDHDRGNASE. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00957; NAD_G3PDH; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Lipid biosynthesis; Lipid metabolism; KW NAD; Oxidoreductase; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome. FT CHAIN 1 312 Glycerol-3-phosphate dehydrogenase FT [NAD(P)+]. FT /FTId=PRO_0000137971. FT NP_BIND 7 12 NAD. {ECO:0000255|HAMAP-Rule:MF_00394}. FT REGION 241 242 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00394}. FT ACT_SITE 177 177 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00394}. FT BINDING 95 95 NAD; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00394}. FT BINDING 95 95 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00394}. FT BINDING 127 127 NAD; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00394}. FT BINDING 241 241 NAD. {ECO:0000255|HAMAP-Rule:MF_00394}. FT BINDING 267 267 NAD. {ECO:0000255|HAMAP-Rule:MF_00394}. SQ SEQUENCE 312 AA; 33392 MW; 5786864D43E8D266 CRC64; MEIAVFGGGA WGRALAFAFG EKNEVKIISR RDLNEPLKKL NDALISKGSA PIEQVDLQRG LKATLYVIAI SVQHLREWFQ NASLPKNAKV LIASKGIEVL NKAFVSEIAK DFIDPNSLCF LAGPSFAAEI IQGLPCALVI HSNNQALALE FANKTPSFIR AYAQQDIIGG EIAGAYKNVI AIAGGVCDGL KLGNSAKASL LSRGLVEMQR FGAFFGGKTE TFLGLSGAGD LFLTANSILS RNYRVGLGLA QNKPLEVVLE ELGEVAEGVK TTNAIVEIAR KYGIYTPIAS ELALLLKGKS VLESMNDLIR RA // ID GYRA_HELPY Reviewed; 827 AA. AC P48370; DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 16-MAR-2016, entry version 106. DE RecName: Full=DNA gyrase subunit A {ECO:0000255|HAMAP-Rule:MF_01897}; DE EC=5.99.1.3 {ECO:0000255|HAMAP-Rule:MF_01897}; GN Name=gyrA {ECO:0000255|HAMAP-Rule:MF_01897}; GN OrderedLocusNames=HP_0701; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=UC946; RX PubMed=7695290; DOI=10.1128/AAC.39.1.107; RA Moore R.A., Beckthold B., Wong S., Kureishi A., Bryan L.E.; RT "Nucleotide sequence of the gyrA gene and characterization of RT ciprofloxacin-resistant mutants of Helicobacter pylori."; RL Antimicrob. Agents Chemother. 39:107-111(1995). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: A type II topoisomerase that negatively supercoils CC closed circular double-stranded (ds) DNA in an ATP-dependent CC manner to modulate DNA topology and maintain chromosomes in an CC underwound state. Negative supercoiling favors strand separation, CC and DNA replication, transcription, recombination and repair, all CC of which involve strand separation. Also able to catalyze the CC interconversion of other topological isomers of dsDNA rings, CC including catenanes and knotted rings. Type II topoisomerases CC break and join 2 DNA strands simultaneously in an ATP-dependent CC manner. {ECO:0000255|HAMAP-Rule:MF_01897}. CC -!- CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining CC of double-stranded DNA. {ECO:0000255|HAMAP-Rule:MF_01897}. CC -!- SUBUNIT: Heterotetramer, composed of two GyrA and two GyrB chains. CC In the heterotetramer, GyrA contains the active site tyrosine that CC forms a transient covalent intermediate with DNA, while GyrB binds CC cofactors and catalyzes ATP hydrolysis. {ECO:0000255|HAMAP- CC Rule:MF_01897}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01897}. CC -!- MISCELLANEOUS: Few gyrases are as efficient as E.coli at forming CC negative supercoils. Not all organisms have 2 type II CC topoisomerases; in organisms with a single type II topoisomerase CC this enzyme also has to decatenate newly replicated chromosomes. CC {ECO:0000255|HAMAP-Rule:MF_01897}. CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrA/ParC subunit CC family. {ECO:0000255|HAMAP-Rule:MF_01897}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; L29481; AAA74376.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07753.1; -; Genomic_DNA. DR PIR; E64607; E64607. DR RefSeq; NP_207495.1; NC_000915.1. DR RefSeq; WP_001153763.1; NC_018939.1. DR ProteinModelPortal; P48370; -. DR SMR; P48370; 34-490. DR DIP; DIP-3353N; -. DR IntAct; P48370; 4. DR MINT; MINT-185350; -. DR STRING; 85962.HP0701; -. DR PaxDb; P48370; -. DR PRIDE; P48370; -. DR EnsemblBacteria; AAD07753; AAD07753; HP_0701. DR GeneID; 898803; -. DR KEGG; heo:C694_03615; -. DR KEGG; hpy:HP0701; -. DR PATRIC; 20592689; VBIHelPyl33062_0733. DR eggNOG; ENOG4105C24; Bacteria. DR eggNOG; COG0188; LUCA. DR KO; K02469; -. DR OMA; ESYLAYS; -. DR OrthoDB; EOG661H5V; -. DR BioCyc; HPY:HP0701-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-HAMAP. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1360.40; -; 1. DR Gene3D; 3.90.199.10; -; 2. DR HAMAP; MF_01897; GyrA; 1. DR InterPro; IPR024946; Arg_repress_C-like. DR InterPro; IPR005743; GyrA. DR InterPro; IPR006691; GyrA/parC_pinwhl. DR InterPro; IPR013760; Topo_IIA-like_dom. DR InterPro; IPR002205; Topo_IIA_A/C. DR InterPro; IPR013758; Topo_IIA_A/C_ab. DR Pfam; PF03989; DNA_gyraseA_C; 6. DR Pfam; PF00521; DNA_topoisoIV; 1. DR SMART; SM00434; TOP4c; 1. DR SUPFAM; SSF56719; SSF56719; 1. DR TIGRFAMs; TIGR01063; gyrA; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; DNA-binding; Isomerase; KW Nucleotide-binding; Reference proteome; Topoisomerase. FT CHAIN 1 827 DNA gyrase subunit A. FT /FTId=PRO_0000145236. FT MOTIF 528 534 GyrA-box. {ECO:0000255|HAMAP- FT Rule:MF_01897}. FT ACT_SITE 126 126 O-(5'-phospho-DNA)-tyrosine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01897}. FT CONFLICT 4 5 NS -> RL (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 191 191 M -> I (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 199 199 V -> A (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 208 208 G -> E (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 354 354 H -> R (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 397 397 R -> Q (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 403 403 Q -> P (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 495 495 N -> S (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 524 524 A -> V (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 610 610 D -> N (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 632 632 E -> G (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 679 679 E -> D (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 683 683 I -> M (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 686 687 TT -> NA (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 694 694 K -> R (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 733 733 G -> E (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 819 819 T -> N (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 821 822 SA -> PT (in Ref. 1; AAA74376). FT {ECO:0000305}. FT CONFLICT 824 824 Missing (in Ref. 1; AAA74376). FT {ECO:0000305}. SQ SEQUENCE 827 AA; 92500 MW; 3631E6AFCF4279F2 CRC64; MQDNSVNETK NIVEVGIDSS IEESYLAYSM SVIIGRALPD ARDGLKPVHR RILYAMHELG LTSKVAYKKS ARIVGDVIGK YHPHGDNAVY DALVRMAQDF SMRLELVDGQ GNFGSIDGDN AAAMRYTEAR MTKASEEILR DIDKDTIDFV PNYDDTLKEP DILPSRLPNL LVNGANGIAV GMATSIPPHR MDEIIDALVH VLENPNAGLD EILEFVKGPD FPTGGIIYGK AGIIEAYKTG RGRVKVRAKV HVEKTKNKEI IVLDEMPFQT NKAKLVEQIS DLAREKQIEG ISEVRDESDR EGIRVVIELK RDAMSEIVLN HLYKLTTMET TFSIILLAIY NKEPKIFTLL ELLHLFLNHR KTIIIRRTIF ELEKAKARAH ILEGYLIALD NIDEIVRLIK TSQSPEAAKN ALMERFTLSE IQSKAILEMR LQRLTGLERD KIKEEYQNLL ELIDDLNGIL KSEDRLNGVV KTELLEVKEQ FSSPRRTEIQ ESYENIDIED LIANEPMVVS MSYKGYVKRV DLKAYEKQNR GGKGKLSGST YEDDFIENFF VANTHDILLF ITNKGQLYHL KVYKIPEASR IAMGKAIVNL ISLAPDEKIM ATLSTKDFSD ERSLAFFTKN GVVKRTNLSE FESNRSCGIR AIVLDEGDEL VSAKVVDKNA KHLLIASHLG IFIKFPLEEV REIGRTTRGV IGIKLNENDF VVGAVVISDD GNKLLSVSEN GLGKQTLAEA YRGQSRGGKG VIGMKLTQKT GNLVGVISVD DENLDLMILT ASAKMIRVSI KDIRETGRNA SGVKLINTAD KVMYVNSCPK EEEPENLETS SAQNLFE // ID GUAA_HELPY Reviewed; 508 AA. AC O25165; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 116. DE RecName: Full=GMP synthase [glutamine-hydrolyzing]; DE EC=6.3.5.2; DE AltName: Full=GMP synthetase; DE AltName: Full=Glutamine amidotransferase; GN Name=guaA; OrderedLocusNames=HP_0409; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the synthesis of GMP from XMP. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + XMP + L-glutamine + H(2)O = AMP + CC diphosphate + GMP + L-glutamate. CC -!- PATHWAY: Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln CC route): step 1/1. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 GMPS ATP-PPase (ATP pyrophosphatase) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07477.1; -; Genomic_DNA. DR PIR; A64571; A64571. DR RefSeq; NP_207207.1; NC_000915.1. DR RefSeq; WP_000604593.1; NC_018939.1. DR ProteinModelPortal; O25165; -. DR DIP; DIP-3393N; -. DR IntAct; O25165; 1. DR MINT; MINT-179255; -. DR STRING; 85962.HP0409; -. DR MEROPS; C26.957; -. DR PaxDb; O25165; -. DR PRIDE; O25165; -. DR EnsemblBacteria; AAD07477; AAD07477; HP_0409. DR GeneID; 900176; -. DR KEGG; heo:C694_02085; -. DR KEGG; hpy:HP0409; -. DR PATRIC; 20592061; VBIHelPyl33062_0424. DR eggNOG; ENOG4105CM0; Bacteria. DR eggNOG; COG0518; LUCA. DR eggNOG; COG0519; LUCA. DR KO; K01951; -. DR OMA; MSHGDSV; -. DR OrthoDB; EOG6JHRJV; -. DR BioCyc; HPY:HP0409-MONOMER; -. DR UniPathway; UPA00189; UER00296. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003922; F:GMP synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016462; F:pyrophosphatase activity; IEA:InterPro. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006177; P:GMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_00344; GMP_synthase; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR001674; GMP_synth_C. DR InterPro; IPR004739; GMP_synth_N. DR InterPro; IPR022955; GMP_synthase. DR InterPro; IPR025777; GMPS_ATP_PPase_dom. DR InterPro; IPR022310; NAD/GMP_synthase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00117; GATase; 1. DR Pfam; PF00958; GMP_synt_C; 1. DR Pfam; PF02540; NAD_synthase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR00884; guaA_Cterm; 1. DR TIGRFAMs; TIGR00888; guaA_Nterm; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. DR PROSITE; PS51553; GMPS_ATP_PPASE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Glutamine amidotransferase; KW GMP biosynthesis; Ligase; Nucleotide-binding; Purine biosynthesis; KW Reference proteome. FT CHAIN 1 508 GMP synthase [glutamine-hydrolyzing]. FT /FTId=PRO_0000140133. FT DOMAIN 1 189 Glutamine amidotransferase type-1. FT DOMAIN 190 383 GMPS ATP-PPase. FT NP_BIND 217 223 ATP. {ECO:0000250}. FT ACT_SITE 78 78 Nucleophile. {ECO:0000250}. FT ACT_SITE 163 163 {ECO:0000250}. FT ACT_SITE 165 165 {ECO:0000250}. SQ SEQUENCE 508 AA; 56824 MW; 19F1FC3CA4331B3F CRC64; MILVLDFGSQ YTQLIARRLR ERGIYTEIVP FFESIENIQK KAPKGLILSG GPASVYAKDA YKPSGKIFDL NVPILGICYG MQYLVDFFGG VVVGANEQEF GKAVLEITQN SVIFEGVKIK SLVWMSHMDK VIELPKGFTT LAKSPNSPHC AIENGKIFGL QFHPEVVQSE EGGKILENFA LLVCGCEKTW GMQHFAQREI ARLKEKIANA KVLCAVSGGV DSTVVATLLH RAIKDNLIAV FVDHGLLRKN EKERVQAMFK DLKIPLNTID AKEVFLSKLK GVSEPELKRK IIGETFIEVF EKEAKKHHLK GKIEFLAQGT LYPDVIESVS VKGPSKVIKT HHNVGGLPEW MDFKLIEPLR ELFKDEVRLL GKELGVSQDF LMRHPFPGPG LAVRILGEIS ESKIKRLQEA DFIFIEELKK ANLYDKVWQA FCVLLNVNSV GVMGDNRTYE NAICLRAVNA SDGMTASFSF LEHSFLEKVS NRITNEVSGI NRVVYDITSK PPGTIEWE // ID GSA_HELPY Reviewed; 430 AA. AC P56115; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; DE Short=GSA; DE EC=5.4.3.8; DE AltName: Full=Glutamate-1-semialdehyde aminotransferase; DE Short=GSA-AT; GN Name=hemL; OrderedLocusNames=HP_0306; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: (S)-4-amino-5-oxopentanoate = 5- CC aminolevulinate. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step CC 2/2. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. HemL subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07374.1; -; Genomic_DNA. DR PIR; B64558; B64558. DR RefSeq; NP_207104.1; NC_000915.1. DR RefSeq; WP_000421462.1; NC_018939.1. DR ProteinModelPortal; P56115; -. DR DIP; DIP-3347N; -. DR IntAct; P56115; 4. DR MINT; MINT-175701; -. DR STRING; 85962.HP0306; -. DR PaxDb; P56115; -. DR PRIDE; P56115; -. DR EnsemblBacteria; AAD07374; AAD07374; HP_0306. DR GeneID; 900188; -. DR KEGG; heo:C694_01545; -. DR KEGG; hpy:HP0306; -. DR PATRIC; 20591839; VBIHelPyl33062_0317. DR eggNOG; ENOG4105CDM; Bacteria. DR eggNOG; COG0001; LUCA. DR KO; K01845; -. DR OMA; IMRHLAP; -. DR OrthoDB; EOG6QVRHN; -. DR BioCyc; HPY:HP0306-MONOMER; -. DR UniPathway; UPA00251; UER00317. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0042286; F:glutamate-1-semialdehyde 2,1-aminomutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR HAMAP; MF_00375; HemL_aminotrans_3; 1. DR InterPro; IPR004639; 4pyrrol_synth_GluAld_NH2Trfase. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00713; hemL; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Isomerase; Porphyrin biosynthesis; KW Pyridoxal phosphate; Reference proteome. FT CHAIN 1 430 Glutamate-1-semialdehyde 2,1-aminomutase. FT /FTId=PRO_0000120414. FT MOD_RES 265 265 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 430 AA; 46727 MW; 246AC6B4096949F7 CRC64; MELLHSINDF NEAKQVIAGG VNSPVRAFKS VKGTPPFILK GKGAYLYDVD NNHYIDFVQS WGPLIFGHAD EEIEENIINA LKKGTSFGAP TELETTLAKE IISCYEGLDK VRLVSSGTEA TMSAIRLARA YSQKDDLIKF EGCYHGHSDS LLVKAGSGCA TFGSPSSLGV PNDFSKHTLV ARYNDLNSTE ECFKKGNVGC VIIEPIAGNM GLVPAQKEFL LGLKALCEKY QAVLILDEVM SGFRASLSGS QEFYGVVPDL VTFGKVIGAG LPLACFGGRA EIMDLLSPIG SVYQAGTLSG NPLAVCAGLS ALYKIKRDKT LYTRLDALAI RLTQGLQKSA QNYNIALETL NMGSMFGFFF NENAVHDFDD ALKSDTEMFA KFHQKMLFKG VYLACSSFET GFICEPMTEE MIDLTIAKAD ESFDEIIKGV // ID GREA_HELPY Reviewed; 164 AA. AC P64275; P55978; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 75. DE RecName: Full=Transcription elongation factor GreA {ECO:0000255|HAMAP-Rule:MF_00105}; DE AltName: Full=Transcript cleavage factor GreA {ECO:0000255|HAMAP-Rule:MF_00105}; GN Name=greA {ECO:0000255|HAMAP-Rule:MF_00105}; GN OrderedLocusNames=HP_0866; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Necessary for efficient RNA polymerase transcription CC elongation past template-encoded arresting sites. The arresting CC sites in DNA have the property of trapping a certain fraction of CC elongating RNA polymerases that pass through, resulting in locked CC ternary complexes. Cleavage of the nascent transcript by cleavage CC factors such as GreA or GreB allows the resumption of elongation CC from the new 3'terminus. GreA releases sequences of 2 to 3 CC nucleotides. {ECO:0000255|HAMAP-Rule:MF_00105}. CC -!- SIMILARITY: Belongs to the GreA/GreB family. {ECO:0000255|HAMAP- CC Rule:MF_00105}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07908.1; -; Genomic_DNA. DR PIR; B64628; B64628. DR RefSeq; NP_207660.1; NC_000915.1. DR RefSeq; WP_001031337.1; NC_018939.1. DR ProteinModelPortal; P64275; -. DR STRING; 85962.HP0866; -. DR PaxDb; P64275; -. DR PRIDE; P64275; -. DR EnsemblBacteria; AAD07908; AAD07908; HP_0866. DR GeneID; 899395; -. DR KEGG; heo:C694_04435; -. DR KEGG; hpy:HP0866; -. DR PATRIC; 20593021; VBIHelPyl33062_0898. DR eggNOG; ENOG4108UKH; Bacteria. DR eggNOG; COG0782; LUCA. DR KO; K03624; -. DR OMA; HNEGRIA; -. DR OrthoDB; EOG686NQ9; -. DR BioCyc; HPY:HP0866-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0032784; P:regulation of DNA-templated transcription, elongation; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.287.180; -; 1. DR Gene3D; 3.10.50.30; -; 1. DR HAMAP; MF_00105; GreA_GreB; 1. DR InterPro; IPR018151; TF_GreA/GreB_CS. DR InterPro; IPR006359; Tscrpt_elong_fac_GreA. DR InterPro; IPR028624; Tscrpt_elong_fac_GreA/B. DR InterPro; IPR001437; Tscrpt_elong_fac_GreA/B_C. DR InterPro; IPR023459; Tscrpt_elong_fac_GreA/B_fam. DR InterPro; IPR022691; Tscrpt_elong_fac_GreA/B_N. DR Pfam; PF01272; GreA_GreB; 1. DR Pfam; PF03449; GreA_GreB_N; 1. DR PIRSF; PIRSF006092; GreA_GreB; 1. DR SUPFAM; SSF46557; SSF46557; 1. DR TIGRFAMs; TIGR01462; greA; 1. DR PROSITE; PS00829; GREAB_1; 1. DR PROSITE; PS00830; GREAB_2; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 164 Transcription elongation factor GreA. FT /FTId=PRO_0000176931. SQ SEQUENCE 164 AA; 18199 MW; 439E43A5FD0965BE CRC64; MNKEPMSMHG YNKICAELKQ LKEVERPNIV KEIDIARGHG DLKENAEYHA AKEKQRFIEA RIVDLSEIVA NAQVIDPSAL AHNKVSFGST IKILNLDNDK EFSYTIVGSV ESDPAKGLIS FGSPIAKSLI GKSKGDAVSI QLPNGESDFE ILDIYYKEIC FDEN // ID HCPA_HELPY Reviewed; 250 AA. AC O25001; O32634; O85223; DT 24-JAN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 111. DE RecName: Full=Beta-lactamase HcpA; DE EC=3.5.2.6; DE AltName: Full=Cysteine-rich 28 kDa protein; DE Flags: Precursor; GN Name=hcpA; OrderedLocusNames=HP_0211; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9317022; RA Karita M., Etterbeek M.L., Forsyth M.H., Tummuru M.K.R., Blaser M.J.; RT "Characterization of Helicobacter pylori dapE and construction of a RT conditionally lethal dapE mutant."; RL Infect. Immun. 65:4158-4164(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND SUBCELLULAR LOCATION. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9596777; RA Cao P., McClain M.S., Forsyth M.H., Cover T.L.; RT "Extracellular release of antigenic proteins by Helicobacter pylori."; RL Infect. Immun. 66:2984-2986(1998). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP FUNCTION, ENZYME REGULATION, MASS SPECTROMETRY, AND DISULFIDE BONDS. RX PubMed=10748053; DOI=10.1074/jbc.M001869200; RA Mittl P.R.E., Luethy L., Hunziker P., Gruetter M.G.; RT "The cysteine-rich protein A from Helicobacter pylori is a beta- RT lactamase."; RL J. Biol. Chem. 275:17693-17699(2000). RN [5] RP ANTIGENICITY. RX PubMed=12853383; DOI=10.1128/CDLI.10.4.542-545.2003; RA Mittl P.R.E., Luethy L., Reinhardt C., Joller H.; RT "Detection of high titers of antibody against Helicobacter cysteine- RT rich proteins A, B, C, and E in Helicobacter pylori-infected RT individuals."; RL Clin. Diagn. Lab. Immunol. 10:542-545(2003). CC -!- FUNCTION: Slowly hydrolyzes 6-aminopenicillinic acid and 7- CC aminocephalosporanic acid (ACA) derivatives. May be involved in CC the synthesis of the cell wall peptidoglycan. CC {ECO:0000269|PubMed:10748053}. CC -!- CATALYTIC ACTIVITY: A beta-lactam + H(2)O = a substituted beta- CC amino acid. CC -!- ENZYME REGULATION: Inhibited by cloxacillin and oxacillin but not CC by ACA derivatives or metal chelators. CC {ECO:0000269|PubMed:10748053}. CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000269|PubMed:9596777}. CC -!- MASS SPECTROMETRY: Mass=25613; Mass_error=1.6; Method=MALDI; CC Range=26-250; Evidence={ECO:0000269|PubMed:10748053}; CC -!- MISCELLANEOUS: Antibodies against HcpA are present in sera from CC human patients infected by Helicobacter pylori. CC -!- SIMILARITY: Belongs to the hcp beta-lactamase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 5 TPR repeats. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF008565; AAB63298.1; -; Genomic_DNA. DR EMBL; AF053708; AAC24210.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07279.1; -; Genomic_DNA. DR PIR; C64546; C64546. DR RefSeq; NP_207009.1; NC_000915.1. DR RefSeq; WP_000901420.1; NC_018939.1. DR ProteinModelPortal; O25001; -. DR SMR; O25001; 28-250. DR STRING; 85962.HP0211; -. DR PaxDb; O25001; -. DR PRIDE; O25001; -. DR EnsemblBacteria; AAD07279; AAD07279; HP_0211. DR GeneID; 899162; -. DR KEGG; heo:C694_01060; -. DR KEGG; hpy:HP0211; -. DR PATRIC; 20591645; VBIHelPyl33062_0222. DR eggNOG; ENOG4105EUU; Bacteria. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; YRSCKLA; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP0211-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0008800; F:beta-lactamase activity; IDA:CACAO. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF08238; Sel1; 4. DR Pfam; PF13181; TPR_8; 1. DR SMART; SM00671; SEL1; 6. DR SMART; SM00028; TPR; 3. PE 1: Evidence at protein level; KW Antibiotic resistance; Complete proteome; Disulfide bond; Hydrolase; KW Reference proteome; Repeat; Secreted; Signal; TPR repeat. FT SIGNAL 1 25 {ECO:0000255}. FT CHAIN 26 250 Beta-lactamase HcpA. FT /FTId=PRO_0000013194. FT REPEAT 29 62 TPR 1. FT REPEAT 67 98 TPR 2. FT REPEAT 100 133 TPR 3. FT REPEAT 134 169 TPR 4. FT REPEAT 170 202 TPR 5. FT DISULFID 56 64 {ECO:0000269|PubMed:10748053}. FT DISULFID 92 100 {ECO:0000269|PubMed:10748053}. FT DISULFID 128 136 {ECO:0000269|PubMed:10748053}. FT DISULFID 164 172 {ECO:0000269|PubMed:10748053}. FT DISULFID 196 204 {ECO:0000269|PubMed:10748053}. FT DISULFID 232 240 {ECO:0000255}. FT VARIANT 4 4 N -> S (in strain: ATCC 49503). FT VARIANT 9 9 L -> F (in strain: ATCC 49503). FT VARIANT 11 11 G -> W (in strain: ATCC 49503). FT VARIANT 17 17 T -> A (in strain: ATCC 49503). FT VARIANT 91 91 G -> S (in strain: ATCC 49503). FT VARIANT 194 194 K -> Q (in strain: ATCC 49503). FT VARIANT 199 199 K -> N (in strain: ATCC 49503). FT VARIANT 235 235 S -> G (in strain: ATCC 49503). SQ SEQUENCE 250 AA; 27366 MW; A375FF12EB795355 CRC64; MLGNVKKTLF GVLCLGTLCL RGLMAEPDAK ELVNLGIESA KKQDFAQAKT HFEKACELKN GFGCVFLGAF YEEGKGVGKD LKKAIQFYTK GCELNDGYGC NLLGNLYYNG QGVSKDAKKA SQYYSKACDL NHAEGCMVLG SLHHYGVGTP KDLRKALDLY EKACDLKDSP GCINAGYIYS VTKNFKEAIV RYSKACELKD GRGCYNLGVM QYNAQGTAKD EKQAVENFKK GCKSSVKEAC DALKELKIEL // ID HCPE_HELPY Reviewed; 355 AA. AC O25021; DT 15-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 94. DE RecName: Full=Putative beta-lactamase HcpE; DE EC=3.5.2.6; DE AltName: Full=Cysteine-rich protein E; DE Flags: Precursor; GN Name=hcpE; OrderedLocusNames=HP_0235; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP ANTIGENICITY. RX PubMed=12853383; DOI=10.1128/CDLI.10.4.542-545.2003; RA Mittl P.R.E., Luethy L., Reinhardt C., Joller H.; RT "Detection of high titers of antibody against Helicobacter cysteine- RT rich proteins A, B, C, and E in Helicobacter pylori-infected RT individuals."; RL Clin. Diagn. Lab. Immunol. 10:542-545(2003). CC -!- FUNCTION: May hydrolyze 6-aminopenicillinic acid and 7- CC aminocephalosporanic acid (ACA) derivatives. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: A beta-lactam + H(2)O = a substituted beta- CC amino acid. CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}. CC -!- MISCELLANEOUS: Antibodies against HcpE are present in sera from CC human patients infected by Helicobacter pylori. CC -!- SIMILARITY: Belongs to the hcp beta-lactamase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 8 TPR repeats. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07303.1; -; Genomic_DNA. DR PIR; C64549; C64549. DR RefSeq; NP_207033.1; NC_000915.1. DR RefSeq; WP_000538261.1; NC_018939.1. DR ProteinModelPortal; O25021; -. DR STRING; 85962.HP0235; -. DR PaxDb; O25021; -. DR PRIDE; O25021; -. DR EnsemblBacteria; AAD07303; AAD07303; HP_0235. DR GeneID; 898928; -. DR KEGG; heo:C694_01185; -. DR KEGG; hpy:HP0235; -. DR PATRIC; 20591695; VBIHelPyl33062_0246. DR eggNOG; ENOG4105EUU; Bacteria. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; NAIMIYD; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP0235-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0008800; F:beta-lactamase activity; IEA:UniProtKB-EC. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF08238; Sel1; 7. DR Pfam; PF13176; TPR_7; 1. DR Pfam; PF13181; TPR_8; 1. DR SMART; SM00671; SEL1; 9. PE 3: Inferred from homology; KW Antibiotic resistance; Complete proteome; Disulfide bond; Hydrolase; KW Reference proteome; Repeat; Secreted; Signal; TPR repeat. FT SIGNAL 1 22 {ECO:0000255}. FT CHAIN 23 355 Putative beta-lactamase HcpE. FT /FTId=PRO_0000013200. FT REPEAT 27 60 TPR 1. FT REPEAT 63 96 TPR 2. FT REPEAT 98 131 TPR 3. FT REPEAT 132 166 TPR 4. FT REPEAT 202 240 TPR 5. FT REPEAT 245 275 TPR 6. FT REPEAT 276 311 TPR 7. FT REPEAT 312 344 TPR 8. FT DISULFID 54 62 {ECO:0000255}. FT DISULFID 90 98 {ECO:0000255}. FT DISULFID 126 134 {ECO:0000255}. FT DISULFID 160 168 {ECO:0000255}. FT DISULFID 197 205 {ECO:0000255}. FT DISULFID 234 242 {ECO:0000255}. FT DISULFID 270 278 {ECO:0000255}. FT DISULFID 306 314 {ECO:0000255}. FT DISULFID 338 346 {ECO:0000255}. SQ SEQUENCE 355 AA; 39399 MW; 12B6CB9E295BD628 CRC64; MGVKFLKILV CGLFFWSLNA HLWGKQDNSF LGVAEKAYKS GNYSKATSYF KKACNDGVSE GCTQLGIIYE NGQGTRIDYK KALEYYKTAC QADDREGCFG LGGLYDEGLG TTQNYQEAID AYAKACVLKH PESCYNLGII YDRKIKGNAD QAVTYYQKSC NFDMAKGCYV LGVAYEKGFL EVKQSNHKAV IYYLKACRLD DGQACRALGS LFENGDAGLD EDFEVAFDYL QKACGLNNSG GCASLGSMYM LGRYVKKDPQ KAFNFFKQAC DMGSAVSCSR MGFMYSQGDA VPKDLRKALD NYERGCDMGD EVGCFALAGM YYNMKDKENA IMIYDKGCKL GMKQACENLT KLRGY // ID GUAC_HELPY Reviewed; 327 AA. AC O25525; DT 15-MAR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=GMP reductase {ECO:0000255|HAMAP-Rule:MF_01511}; DE EC=1.7.1.7 {ECO:0000255|HAMAP-Rule:MF_01511}; DE AltName: Full=Guanosine 5'-monophosphate oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01511}; DE Short=Guanosine monophosphate reductase {ECO:0000255|HAMAP-Rule:MF_01511}; GN Name=guaC {ECO:0000255|HAMAP-Rule:MF_01511}; GN OrderedLocusNames=HP_0854; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the irreversible NADPH-dependent deamination CC of GMP to IMP. It functions in the conversion of nucleobase, CC nucleoside and nucleotide derivatives of G to A nucleotides, and CC in maintaining the intracellular balance of A and G nucleotides. CC {ECO:0000255|HAMAP-Rule:MF_01511}. CC -!- CATALYTIC ACTIVITY: Inosine 5'-phosphate + NH(3) + NADP(+) = CC guanosine 5'-phosphate + NADPH. {ECO:0000255|HAMAP-Rule:MF_01511}. CC -!- SIMILARITY: Belongs to the IMPDH/GMPR family. GuaC type 2 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01511}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07901.1; -; Genomic_DNA. DR PIR; F64626; F64626. DR RefSeq; NP_207648.1; NC_000915.1. DR RefSeq; WP_010875554.1; NC_000915.1. DR ProteinModelPortal; O25525; -. DR SMR; O25525; 5-322. DR DIP; DIP-3407N; -. DR IntAct; O25525; 1. DR MINT; MINT-176797; -. DR STRING; 85962.HP0854; -. DR PaxDb; O25525; -. DR PRIDE; O25525; -. DR EnsemblBacteria; AAD07901; AAD07901; HP_0854. DR GeneID; 899383; -. DR KEGG; hpy:HP0854; -. DR PATRIC; 20592997; VBIHelPyl33062_0886. DR eggNOG; ENOG4105CP4; Bacteria. DR eggNOG; COG0516; LUCA. DR KO; K00364; -. DR OMA; EGKKIWI; -. DR OrthoDB; EOG6GTZPV; -. DR BioCyc; HPY:HP0854-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:1902560; C:GMP reductase complex; IEA:UniProtKB-EC. DR GO; GO:0003920; F:GMP reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006163; P:purine nucleotide metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01511; GMP_reduct_type2; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR005994; GuaC_type_2. DR InterPro; IPR015875; IMP_DH/GMP_Rdtase_CS. DR InterPro; IPR001093; IMP_DH_GMPRt. DR Pfam; PF00478; IMPDH; 1. DR PIRSF; PIRSF036500; GMP_red_Firmic; 1. DR TIGRFAMs; TIGR01306; GMP_reduct_2; 1. DR PROSITE; PS00487; IMP_DH_GMP_RED; 1. PE 3: Inferred from homology; KW Complete proteome; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 327 GMP reductase. FT /FTId=PRO_0000093756. FT NP_BIND 205 228 NADP. {ECO:0000255|HAMAP-Rule:MF_01511}. FT ACT_SITE 176 176 Thioimidate intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01511}. SQ SEQUENCE 327 AA; 36039 MW; E9ED3053C3E103C8 CRC64; MSLKVFDYED VQLIPNKCIV NSRSECDTTV ILGKHAFKMP IVPANMQTII NESIAEFLAE NGYFYIMHRF DGAARIPFVK KMKKRQWISS ISVGVKKEEC LFVEELAKQG LAPDYITIDI AHGHSNSVIE MIQRIKTHLP ETFVIAGNVG TPEAVRELEN AGADATKVGI GPGKVCITKI KTGFGTGGWQ LAALRWCAKA ARKPIIADGG IRTHGDIVKS IRFGATMVMI GSLFAGHEES SGETKIENGI AYKEYFGSAS EFQKGEKKNI EGKKIWIQHK GSLKDTLVEM HQDLQSSISY AGGRDLEAIR KVDYVIVKNS IFNGDAI // ID HEM2_HELPY Reviewed; 323 AA. AC P56074; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Delta-aminolevulinic acid dehydratase; DE Short=ALAD; DE Short=ALADH; DE EC=4.2.1.24; DE AltName: Full=Porphobilinogen synthase; GN Name=hemB; OrderedLocusNames=HP_0163; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes an early step in the biosynthesis of CC tetrapyrroles. Binds two molecules of 5-aminolevulinate per CC subunit, each at a distinct site, and catalyzes their condensation CC to form porphobilinogen (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 2 5-aminolevulinate = porphobilinogen + 2 CC H(2)O. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per monomer. {ECO:0000250}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: CC step 1/4. CC -!- SUBUNIT: Homooctamer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ALAD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07232.1; -; Genomic_DNA. DR PIR; C64540; C64540. DR RefSeq; NP_206962.1; NC_000915.1. DR RefSeq; WP_000476591.1; NC_018939.1. DR ProteinModelPortal; P56074; -. DR SMR; P56074; 1-318. DR IntAct; P56074; 1. DR STRING; 85962.HP0163; -. DR PaxDb; P56074; -. DR PRIDE; P56074; -. DR EnsemblBacteria; AAD07232; AAD07232; HP_0163. DR GeneID; 899142; -. DR KEGG; heo:C694_00810; -. DR KEGG; hpy:HP0163; -. DR PATRIC; 20591547; VBIHelPyl33062_0173. DR eggNOG; ENOG4105D52; Bacteria. DR eggNOG; COG0113; LUCA. DR KO; K01698; -. DR OMA; ISYHAKE; -. DR OrthoDB; EOG6VXFCB; -. DR BioCyc; HPY:HP0163-MONOMER; -. DR UniPathway; UPA00251; UER00318. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004655; F:porphobilinogen synthase activity; IEA:UniProtKB-EC. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR001731; ALAD. DR InterPro; IPR030656; ALAD_AS. DR InterPro; IPR013785; Aldolase_TIM. DR PANTHER; PTHR11458; PTHR11458; 1. DR Pfam; PF00490; ALAD; 1. DR PIRSF; PIRSF001415; Porphbilin_synth; 1. DR PRINTS; PR00144; DALDHYDRTASE. DR SMART; SM01004; ALAD; 1. DR PROSITE; PS00169; D_ALA_DEHYDRATASE; 1. PE 3: Inferred from homology; KW Complete proteome; Heme biosynthesis; Lyase; Magnesium; Metal-binding; KW Porphyrin biosynthesis; Reference proteome; Zinc. FT CHAIN 1 323 Delta-aminolevulinic acid dehydratase. FT /FTId=PRO_0000140502. FT ACT_SITE 193 193 Schiff-base intermediate with substrate. FT {ECO:0000250}. FT ACT_SITE 246 246 Schiff-base intermediate with substrate. FT {ECO:0000250}. FT METAL 118 118 Zinc; catalytic. {ECO:0000250}. FT METAL 120 120 Zinc; catalytic. {ECO:0000250}. FT METAL 128 128 Zinc; catalytic. {ECO:0000250}. FT METAL 231 231 Magnesium. {ECO:0000250}. FT BINDING 203 203 Substrate 1. {ECO:0000250}. FT BINDING 215 215 Substrate 1. {ECO:0000250}. FT BINDING 272 272 Substrate 2. {ECO:0000250}. FT BINDING 311 311 Substrate 2. {ECO:0000250}. SQ SEQUENCE 323 AA; 36203 MW; ADB784A450856CA2 CRC64; MFKRLRRLRS SENLRAMLRE TRLNIDDFIA PLFVIESDSC IKNEISSMPG VYQMSMEPLL KECEELVGLG VKAVLLFGIP KHKDATGSHA LNKDHIVAKA AKEIKKRFKD LIVIADLCFC EYTDHGHCGI LENASVSNDK TLEILNLQGL ILAESGVDIL APSNMMDGNV LSLRKTLDNA GYTHTPIMSY STKFASSYYG PFRDVANSAP SFGDRKSYQM DYANQKEALL ESLEDEKQGA DILMVKPALA YLDIVKEIRD HTLLPLALYN VSGEYAMLKL AQKHNLINYE SVLLETMTCF KRAGADMIIS YHAKEVANLL QRN // ID HEM3_HELPY Reviewed; 306 AA. AC P56140; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Porphobilinogen deaminase; DE Short=PBG; DE EC=2.5.1.61; DE AltName: Full=Hydroxymethylbilane synthase; DE Short=HMBS; DE AltName: Full=Pre-uroporphyrinogen synthase; GN Name=hemC; OrderedLocusNames=HP_0237; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Tetrapolymerization of the monopyrrole PBG into the CC hydroxymethylbilane pre-uroporphyrinogen in several discrete CC steps. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 4 porphobilinogen + H(2)O = CC hydroxymethylbilane + 4 NH(3). CC -!- COFACTOR: CC Name=dipyrromethane; Xref=ChEBI:CHEBI:60342; CC Evidence={ECO:0000250}; CC Note=Binds 1 dipyrromethane group covalently. {ECO:0000250}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: CC step 2/4. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- MISCELLANEOUS: The porphobilinogen subunits are added to the CC dipyrromethane group. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the HMBS family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07304.1; -; Genomic_DNA. DR PIR; E64549; E64549. DR RefSeq; NP_207035.1; NC_000915.1. DR RefSeq; WP_000527585.1; NC_018939.1. DR ProteinModelPortal; P56140; -. DR STRING; 85962.HP0237; -. DR PaxDb; P56140; -. DR PRIDE; P56140; -. DR EnsemblBacteria; AAD07304; AAD07304; HP_0237. DR GeneID; 899174; -. DR KEGG; heo:C694_01195; -. DR KEGG; hpy:HP0237; -. DR PATRIC; 20591699; VBIHelPyl33062_0248. DR eggNOG; ENOG4105D6W; Bacteria. DR eggNOG; COG0181; LUCA. DR KO; K01749; -. DR OMA; GIECRTD; -. DR OrthoDB; EOG6HB9Z6; -. DR BioCyc; HPY:HP0237-MONOMER; -. DR UniPathway; UPA00251; UER00319. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004418; F:hydroxymethylbilane synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0018160; P:peptidyl-pyrromethane cofactor linkage; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.160.40; -; 1. DR HAMAP; MF_00260; Porphobil_deam; 1. DR InterPro; IPR000860; HemC. DR InterPro; IPR022419; Porphobilin_deaminase_cofac_BS. DR InterPro; IPR022417; Porphobilin_deaminase_N. DR InterPro; IPR022418; Porphobilinogen_deaminase_C. DR PANTHER; PTHR11557; PTHR11557; 1. DR Pfam; PF01379; Porphobil_deam; 1. DR Pfam; PF03900; Porphobil_deamC; 1. DR PIRSF; PIRSF001438; 4pyrrol_synth_OHMeBilane_synth; 1. DR PRINTS; PR00151; PORPHBDMNASE. DR SUPFAM; SSF54782; SSF54782; 1. DR TIGRFAMs; TIGR00212; hemC; 1. DR PROSITE; PS00533; PORPHOBILINOGEN_DEAM; 1. PE 3: Inferred from homology; KW Complete proteome; Porphyrin biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 306 Porphobilinogen deaminase. FT /FTId=PRO_0000142945. FT MOD_RES 239 239 S-(dipyrrolylmethanemethyl)cysteine. FT {ECO:0000250}. SQ SEQUENCE 306 AA; 33940 MW; 583F9944464A8B46 CRC64; MGNLVIGSRG SELALWQANH IKERLKKECL IESEIQIVKT KGDKILDTPL NKIGGKGLFT KELEELLLKG AIDLAVHSLK DVPVVFEKGL DLACITKRAD VRDTFLSVKF PDLMSLPKGA KVGTTSLRRS MQIKLKRQDL DTESLRGNVQ TRLKKLECGE FDAIILAEAG LCRLEIQGAK YRKAFSVEEM IPSMGQGALG VEMLKNHKHF ATLQKLNDEK SAFCCRLERE FIKGLNGGCQ IPIGVHASLM GDRVKIQAVL GLPNGKEVIT KEKQGDKTKA FDLVQELLEE FLQSGAKEIL EKAQLF // ID GYRB_HELPY Reviewed; 773 AA. AC P55992; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 16-MAR-2016, entry version 104. DE RecName: Full=DNA gyrase subunit B {ECO:0000255|HAMAP-Rule:MF_01898}; DE EC=5.99.1.3 {ECO:0000255|HAMAP-Rule:MF_01898}; GN Name=gyrB {ECO:0000255|HAMAP-Rule:MF_01898}; GN OrderedLocusNames=HP_0501; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: A type II topoisomerase that negatively supercoils CC closed circular double-stranded (ds) DNA in an ATP-dependent CC manner to modulate DNA topology and maintain chromosomes in an CC underwound state. Negative supercoiling favors strand separation, CC and DNA replication, transcription, recombination and repair, all CC of which involve strand separation. Also able to catalyze the CC interconversion of other topological isomers of dsDNA rings, CC including catenanes and knotted rings. Type II topoisomerases CC break and join 2 DNA strands simultaneously in an ATP-dependent CC manner. {ECO:0000255|HAMAP-Rule:MF_01898}. CC -!- CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining CC of double-stranded DNA. {ECO:0000255|HAMAP-Rule:MF_01898}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01898}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01898}; CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01898}; CC Note=Binds two Mg(2+) per subunit. The magnesium ions form salt CC bridges with both the protein and the DNA. Can also accept other CC divalent metal cations, such as Mn(2+) or Ca(2+). CC {ECO:0000255|HAMAP-Rule:MF_01898}; CC -!- SUBUNIT: Heterotetramer, composed of two GyrA and two GyrB chains. CC In the heterotetramer, GyrA contains the active site tyrosine that CC forms a transient covalent intermediate with DNA, while GyrB binds CC cofactors and catalyzes ATP hydrolysis. {ECO:0000255|HAMAP- CC Rule:MF_01898}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01898}. CC -!- MISCELLANEOUS: Few gyrases are as efficient as E.coli at forming CC negative supercoils. Not all organisms have 2 type II CC topoisomerases; in organisms with a single type II topoisomerase CC this enzyme also has to decatenate newly replicated chromosomes. CC {ECO:0000255|HAMAP-Rule:MF_01898}. CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrB family. CC {ECO:0000255|HAMAP-Rule:MF_01898}. CC -!- SIMILARITY: Contains 1 Toprim domain. {ECO:0000255|HAMAP- CC Rule:MF_01898}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07566.1; -; Genomic_DNA. DR PIR; E64582; E64582. DR RefSeq; NP_207298.1; NC_000915.1. DR RefSeq; WP_001182024.1; NC_018939.1. DR ProteinModelPortal; P55992; -. DR DIP; DIP-3593N; -. DR IntAct; P55992; 3. DR MINT; MINT-168943; -. DR STRING; 85962.HP0501; -. DR PaxDb; P55992; -. DR PRIDE; P55992; -. DR EnsemblBacteria; AAD07566; AAD07566; HP_0501. DR GeneID; 900050; -. DR KEGG; heo:C694_02575; -. DR KEGG; hpy:HP0501; -. DR PATRIC; 20592277; VBIHelPyl33062_0527. DR eggNOG; ENOG4105C7D; Bacteria. DR eggNOG; COG0187; LUCA. DR KO; K02470; -. DR OMA; IKNMITA; -. DR OrthoDB; EOG6P334W; -. DR BioCyc; HPY:HP0501-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-HAMAP. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR Gene3D; 3.40.50.670; -; 2. DR HAMAP; MF_01898; GyrB; 1. DR InterPro; IPR002288; DNA_gyrase_B_C. DR InterPro; IPR011557; GyrB. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR001241; Topo_IIA. DR InterPro; IPR013760; Topo_IIA-like_dom. DR InterPro; IPR013506; Topo_IIA_bsu_dom2. DR InterPro; IPR013759; Topo_IIA_cen_dom. DR InterPro; IPR018522; TopoIIA_CS. DR InterPro; IPR006171; Toprim_domain. DR Pfam; PF00204; DNA_gyraseB; 1. DR Pfam; PF00986; DNA_gyraseB_C; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF01751; Toprim; 1. DR PRINTS; PR00418; TPI2FAMILY. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00433; TOP2c; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR SUPFAM; SSF56719; SSF56719; 2. DR TIGRFAMs; TIGR01059; gyrB; 1. DR PROSITE; PS00177; TOPOISOMERASE_II; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; DNA-binding; Isomerase; KW Magnesium; Metal-binding; Nucleotide-binding; Reference proteome; KW Topoisomerase. FT CHAIN 1 773 DNA gyrase subunit B. FT /FTId=PRO_0000145314. FT DOMAIN 416 530 Toprim. {ECO:0000255|HAMAP- FT Rule:MF_01898}. FT METAL 422 422 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_01898}. FT METAL 495 495 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_01898}. FT METAL 495 495 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_01898}. FT METAL 497 497 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_01898}. FT SITE 447 447 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_01898}. FT SITE 450 450 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_01898}. SQ SEQUENCE 773 AA; 87367 MW; FDB47D3112CE8661 CRC64; MQNYQSHSIK VLKGLEGVRK RPGMYIGDTN VGGLHHMVYE VVDNAVDESM AGFCDTINIT LTDEGSCIVE DNGRGIPVDI HPTEKIPACT VVLTILHAGG KFDNDTYKVS GGLHGVGVSV VNALSKRLIM TIKKEGQIYR QEFEKGIPTS ELEIIGKTKS AKESGTTIEF FPDESVMEVV EFQAGILQKR FKEMAYLNDG LKISFKEEKT QLQETYFYED GLKQFVKDSA KKELLTPIIS FKSMDEETRT SIEVALAYAD DYNENTLSFV NNIKTSEGGT HEAGFKMGLS KAILQYIGNN IKTKESRPIS EDIKEGLIAV VSLKMSEPLF EGQTKSKLGS SYARALVSKL VYDKIHQFLE ENPNEAKIIA NKALLAAKAR EASKKARELT RKKDNLSVGT LPGKLADCQS KDPLESEIFL VEGDSAGGSA KQGRDRVFQA ILPLKGKILN VEKSHLSKIL KSEEIKNMIT AFGCGIQESF DIERLRYHKI IIMTDADVDG SHIQTLLMTF FYRYLRPLIE QGHVYIAQAP LYKYKKGKTE IYLKDSVALD HFLIEHGINS VDIEGIGKND LMNLLKVARH YRYALLELEK RYNLLEILRF LIETKDALSL DMKVLEKSIL EKLEGLNYQI LRSFATEESL HLHTQTPKGL VEFNLDDNLF KEVLFEEANY TYQKLMEYNL DFLENKDILA FLEEVENHAK KGANIQRYKG LGEMNPNDLW ETTMHKENRS LIKLKIEDLE KTDAVFSLCM GDEVEPRRAF IQAHAKDVKQ LDV // ID HEM1_HELPY Reviewed; 449 AA. AC P56125; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 109. DE RecName: Full=Glutamyl-tRNA reductase {ECO:0000255|HAMAP-Rule:MF_00087}; DE Short=GluTR {ECO:0000255|HAMAP-Rule:MF_00087}; DE EC=1.2.1.70 {ECO:0000255|HAMAP-Rule:MF_00087}; GN Name=hemA {ECO:0000255|HAMAP-Rule:MF_00087}; GN OrderedLocusNames=HP_0239; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl- CC tRNA(Glu) to glutamate 1-semialdehyde (GSA). {ECO:0000255|HAMAP- CC Rule:MF_00087}. CC -!- CATALYTIC ACTIVITY: L-glutamate 1-semialdehyde + NADP(+) + CC tRNA(Glu) = L-glutamyl-tRNA(Glu) + NADPH. {ECO:0000255|HAMAP- CC Rule:MF_00087}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step CC 1/2. {ECO:0000255|HAMAP-Rule:MF_00087}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00087}. CC -!- DOMAIN: Possesses an unusual extended V-shaped dimeric structure CC with each monomer consisting of three distinct domains arranged CC along a curved 'spinal' alpha-helix. The N-terminal catalytic CC domain specifically recognizes the glutamate moiety of the CC substrate. The second domain is the NADPH-binding domain, and the CC third C-terminal domain is responsible for dimerization. CC {ECO:0000255|HAMAP-Rule:MF_00087}. CC -!- MISCELLANEOUS: During catalysis, the active site Cys acts as a CC nucleophile attacking the alpha-carbonyl group of tRNA-bound CC glutamate with the formation of a thioester intermediate between CC enzyme and glutamate, and the concomitant release of tRNA(Glu). CC The thioester intermediate is finally reduced by direct hydride CC transfer from NADPH, to form the product GSA. {ECO:0000255|HAMAP- CC Rule:MF_00087}. CC -!- SIMILARITY: Belongs to the glutamyl-tRNA reductase family. CC {ECO:0000255|HAMAP-Rule:MF_00087}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07306.1; -; Genomic_DNA. DR PIR; G64549; G64549. DR RefSeq; NP_207037.1; NC_000915.1. DR RefSeq; WP_000418286.1; NC_018939.1. DR ProteinModelPortal; P56125; -. DR STRING; 85962.HP0239; -. DR PaxDb; P56125; -. DR PRIDE; P56125; -. DR EnsemblBacteria; AAD07306; AAD07306; HP_0239. DR GeneID; 898973; -. DR KEGG; heo:C694_01210; -. DR KEGG; hpy:HP0239; -. DR PATRIC; 20591703; VBIHelPyl33062_0250. DR eggNOG; ENOG4105C7E; Bacteria. DR eggNOG; COG0373; LUCA. DR KO; K02492; -. DR OMA; NHCPNIK; -. DR OrthoDB; EOG6MWNBM; -. DR BioCyc; HPY:HP0239-MONOMER; -. DR UniPathway; UPA00251; UER00316. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008883; F:glutamyl-tRNA reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00087; Glu_tRNA_reductase; 1. DR InterPro; IPR000343; 4pyrrol_synth_GluRdtase. DR InterPro; IPR015896; 4pyrrol_synth_GluRdtase_dimer. DR InterPro; IPR015895; 4pyrrol_synth_GluRdtase_N. DR InterPro; IPR018214; GluRdtase_CS. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006151; Shikm_DH/Glu-tRNA_Rdtase. DR Pfam; PF00745; GlutR_dimer; 1. DR Pfam; PF05201; GlutR_N; 1. DR Pfam; PF01488; Shikimate_DH; 1. DR PIRSF; PIRSF000445; 4pyrrol_synth_GluRdtase; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF69075; SSF69075; 1. DR SUPFAM; SSF69742; SSF69742; 1. DR TIGRFAMs; TIGR01035; hemA; 1. DR PROSITE; PS00747; GLUTR; 1. PE 3: Inferred from homology; KW Complete proteome; NADP; Oxidoreductase; Porphyrin biosynthesis; KW Reference proteome. FT CHAIN 1 449 Glutamyl-tRNA reductase. FT /FTId=PRO_0000114032. FT NP_BIND 203 208 NADP. {ECO:0000255|HAMAP-Rule:MF_00087}. FT REGION 58 61 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00087}. FT REGION 126 128 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00087}. FT ACT_SITE 59 59 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_00087}. FT BINDING 121 121 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00087}. FT BINDING 132 132 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00087}. FT SITE 111 111 Important for activity. FT {ECO:0000255|HAMAP-Rule:MF_00087}. SQ SEQUENCE 449 AA; 51902 MW; C4B12225DE4D83CB CRC64; MELETHLSKY FTLAFTHKSM SLEMREKLAI NSNATLKEFL QTIKNHCPNI KECMVLSTCN RFEIYASLKH GANTNEQKNA LLKILAQNKK MSVSDLEKCV LMNTDESAVH HVFSVCSSLD SLVVGETQIT GQMKNAYKFA FEEKFCSKDL TRLLHFAFKC AAKVRNLTGI SKQGVSISSV AVKEALNIFE KERIKDKKAL VIGLGEMAQL VIKHLLNKQF EALILGRNAA KFEDFIKELE EPKKVSFQNI ENLNAYINEY ELLFCATSSP HFIVQNRMLK ETIFRRFWFD LAVPRNIEKP VLDNIFLYSV DDLEPMVREN VENRQESRMR AYEIVGLATM EFYQWIQSLE VEPVIKDLRE LARISAQKEL QKALKKRYVP KEYENNIEKI LHNAFNTFLH NPTIALKKNA QKEESDVLVG AIKNLFNLDK SNANHAQNLN LYKCEYYEE // ID HEMH_HELPY Reviewed; 334 AA. AC P56107; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Ferrochelatase; DE EC=4.99.1.1; DE AltName: Full=Heme synthase; DE AltName: Full=Protoheme ferro-lyase; GN Name=hemH; OrderedLocusNames=HP_0376; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the ferrous insertion into protoporphyrin IX. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Protoheme + 2 H(+) = protoporphyrin + Fe(2+). CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoheme CC biosynthesis; protoheme from protoporphyrin-IX: step 1/1. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ferrochelatase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07444.1; -; Genomic_DNA. DR PIR; H64566; H64566. DR RefSeq; NP_207174.1; NC_000915.1. DR RefSeq; WP_000364269.1; NC_018939.1. DR ProteinModelPortal; P56107; -. DR IntAct; P56107; 2. DR STRING; 85962.HP0376; -. DR PaxDb; P56107; -. DR PRIDE; P56107; -. DR EnsemblBacteria; AAD07444; AAD07444; HP_0376. DR GeneID; 898870; -. DR KEGG; heo:C694_01910; -. DR KEGG; hpy:HP0376; -. DR PATRIC; 20591989; VBIHelPyl33062_0388. DR eggNOG; ENOG4105CFX; Bacteria. DR eggNOG; COG0276; LUCA. DR KO; K01772; -. DR OMA; LPIQNKL; -. DR OrthoDB; EOG6XHC5H; -. DR BioCyc; HPY:HP0376-MONOMER; -. DR UniPathway; UPA00252; UER00325. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004325; F:ferrochelatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006783; P:heme biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00323; Ferrochelatase; 1. DR InterPro; IPR001015; Ferrochelatase. DR InterPro; IPR019772; Ferrochelatase_AS. DR PANTHER; PTHR11108; PTHR11108; 1. DR Pfam; PF00762; Ferrochelatase; 1. DR TIGRFAMs; TIGR00109; hemH; 1. DR PROSITE; PS00534; FERROCHELATASE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Heme biosynthesis; Iron; Lyase; KW Metal-binding; Porphyrin biosynthesis; Reference proteome. FT CHAIN 1 334 Ferrochelatase. FT /FTId=PRO_0000175149. FT METAL 207 207 Iron. {ECO:0000250}. FT METAL 288 288 Iron. {ECO:0000250}. SQ SEQUENCE 334 AA; 38735 MW; A955449996649B3E CRC64; MDLINEKLNN LENNATKSPK EAVILLNMGG PNSLYEVGVF LKNMFDDPFI LTIKNNFMRK MVGKMIVNSR IEKSKKIYEK LGGKSPLTPI TFALTERLNK LDPSRFYTYA MRYTPPYASM VLQDLALKEV ESLVFFSMYP QYSSTTTLSS FNDAFNALKS LETFRPKVRV IERFYASKKL NKIILNTILN TLNNRKSQDF VLIFSVHGLP KSVIDAGDTY QQECEHHVSL LKELMQQKNT PFKEVLLSYQ SKLGPMKWLE PSTEELIEKH RKSHIIIYPL AFTIDNSETL YELDMQYRLM AERLAVKEYL VCPCLNDSIE FAQFIIERVK NLKE // ID HCPC_HELPY Reviewed; 290 AA. AC O25728; DT 15-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 108. DE RecName: Full=Putative beta-lactamase HcpC; DE EC=3.5.2.6; DE AltName: Full=Cysteine-rich protein C; DE Flags: Precursor; GN Name=hcpC; OrderedLocusNames=HP_1098; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP ANTIGENICITY. RX PubMed=11921447; RX DOI=10.1002/1615-9861(200203)2:3<313::AID-PROT313>3.0.CO;2-7; RA Haas G., Karaali G., Ebermayer K., Metzger W.G., Lamer S., RA Zimny-Arndt U., Diescher S., Goebel U.B., Vogt K., Roznowski A.B., RA Wiedenmann B.J., Meyer T.F., Aebischer T., Jungblut P.R.; RT "Immunoproteomics of Helicobacter pylori infection and relation to RT gastric disease."; RL Proteomics 2:313-324(2002). RN [3] RP ANTIGENICITY. RX PubMed=12853383; DOI=10.1128/CDLI.10.4.542-545.2003; RA Mittl P.R.E., Luethy L., Reinhardt C., Joller H.; RT "Detection of high titers of antibody against Helicobacter cysteine- RT rich proteins A, B, C, and E in Helicobacter pylori-infected RT individuals."; RL Clin. Diagn. Lab. Immunol. 10:542-545(2003). RN [4] RP X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 24-290, AND DISULFIDE BONDS. RX PubMed=15223324; DOI=10.1016/j.jmb.2004.04.055; RA Luethy L., Grutter M.G., Mittl P.R.E.; RT "The crystal structure of Helicobacter cysteine-rich protein C at 2.0 RT A resolution: similar peptide-binding sites in TPR and SEL1-like RT repeat proteins."; RL J. Mol. Biol. 340:829-841(2004). CC -!- FUNCTION: May hydrolyze 6-aminopenicillinic acid and 7- CC aminocephalosporanic acid (ACA) derivatives. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: A beta-lactam + H(2)O = a substituted beta- CC amino acid. CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}. CC -!- MISCELLANEOUS: Antibodies against HcpC are present in sera from CC human patients infected by Helicobacter pylori. CC -!- SIMILARITY: Belongs to the hcp beta-lactamase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 7 TPR repeats. {ECO:0000255|PROSITE- CC ProRule:PRU00339}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08141.1; -; Genomic_DNA. DR PIR; B64657; B64657. DR RefSeq; NP_207889.1; NC_000915.1. DR RefSeq; WP_000892717.1; NC_018939.1. DR PDB; 1OUV; X-ray; 2.00 A; A=24-290. DR PDBsum; 1OUV; -. DR ProteinModelPortal; O25728; -. DR SMR; O25728; 28-290. DR DIP; DIP-3502N; -. DR IntAct; O25728; 1. DR MINT; MINT-164700; -. DR STRING; 85962.HP1098; -. DR PaxDb; O25728; -. DR PRIDE; O25728; -. DR EnsemblBacteria; AAD08141; AAD08141; HP_1098. DR GeneID; 899634; -. DR KEGG; heo:C694_05665; -. DR KEGG; hpy:HP1098; -. DR PATRIC; 20593535; VBIHelPyl33062_1147. DR eggNOG; ENOG4105EUU; Bacteria. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; KKQAFYW; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP1098-MONOMER; -. DR EvolutionaryTrace; O25728; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0008800; F:beta-lactamase activity; IEA:UniProtKB-EC. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF08238; Sel1; 7. DR SMART; SM00671; SEL1; 7. DR SMART; SM00028; TPR; 3. DR PROSITE; PS50005; TPR; 1. PE 1: Evidence at protein level; KW 3D-structure; Antibiotic resistance; Complete proteome; KW Disulfide bond; Hydrolase; Reference proteome; Repeat; Secreted; KW Signal; TPR repeat. FT SIGNAL 1 25 {ECO:0000255}. FT CHAIN 26 290 Putative beta-lactamase HcpC. FT /FTId=PRO_0000013196. FT REPEAT 29 62 TPR 1. FT REPEAT 64 98 TPR 2. FT REPEAT 100 133 TPR 3. FT REPEAT 134 170 TPR 4. FT REPEAT 172 205 TPR 5. FT REPEAT 206 242 TPR 6. FT REPEAT 244 278 TPR 7. FT DISULFID 56 64 {ECO:0000269|PubMed:15223324}. FT DISULFID 92 100 {ECO:0000269|PubMed:15223324}. FT DISULFID 128 136 {ECO:0000269|PubMed:15223324}. FT DISULFID 164 172 {ECO:0000269|PubMed:15223324}. FT DISULFID 200 208 {ECO:0000269|PubMed:15223324}. FT DISULFID 236 244 {ECO:0000269|PubMed:15223324}. FT DISULFID 272 280 {ECO:0000269|PubMed:15223324}. FT HELIX 29 41 {ECO:0000244|PDB:1OUV}. FT HELIX 45 57 {ECO:0000244|PDB:1OUV}. FT HELIX 61 73 {ECO:0000244|PDB:1OUV}. FT STRAND 75 77 {ECO:0000244|PDB:1OUV}. FT HELIX 81 93 {ECO:0000244|PDB:1OUV}. FT HELIX 97 109 {ECO:0000244|PDB:1OUV}. FT STRAND 111 113 {ECO:0000244|PDB:1OUV}. FT HELIX 117 129 {ECO:0000244|PDB:1OUV}. FT HELIX 133 145 {ECO:0000244|PDB:1OUV}. FT STRAND 147 149 {ECO:0000244|PDB:1OUV}. FT HELIX 153 165 {ECO:0000244|PDB:1OUV}. FT HELIX 169 181 {ECO:0000244|PDB:1OUV}. FT STRAND 183 185 {ECO:0000244|PDB:1OUV}. FT HELIX 189 201 {ECO:0000244|PDB:1OUV}. FT HELIX 205 217 {ECO:0000244|PDB:1OUV}. FT HELIX 225 237 {ECO:0000244|PDB:1OUV}. FT HELIX 241 252 {ECO:0000244|PDB:1OUV}. FT STRAND 255 258 {ECO:0000244|PDB:1OUV}. FT HELIX 264 274 {ECO:0000244|PDB:1OUV}. FT HELIX 277 284 {ECO:0000244|PDB:1OUV}. SQ SEQUENCE 290 AA; 31594 MW; 0F0CFD779A6F108E CRC64; MLENVKKSFF RVLCLGALCL GGLMAEQDPK ELVGLGAKSY KEKDFTQAKK YFEKACDLKE NSGCFNLGVL YYQGQGVEKN LKKAASFYAK ACDLNYSNGC HLLGNLYYSG QGVSQNTNKA LQYYSKACDL KYAEGCASLG GIYHDGKVVT RDFKKAVEYF TKACDLNDGD GCTILGSLYD AGRGTPKDLK KALASYDKAC DLKDSPGCFN AGNMYHHGEG ATKNFKEALA RYSKACELEN GGGCFNLGAM QYNGEGVTRN EKQAIENFKK GCKLGAKGAC DILKQLKIKV // ID HCPB_HELPY Reviewed; 138 AA. AC O25103; DT 15-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Beta-lactamase HcpB; DE EC=3.5.2.6; DE AltName: Full=Cysteine-rich protein B; GN Name=hcpB; OrderedLocusNames=HP_0336; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP ANTIGENICITY. RX PubMed=12853383; DOI=10.1128/CDLI.10.4.542-545.2003; RA Mittl P.R.E., Luethy L., Reinhardt C., Joller H.; RT "Detection of high titers of antibody against Helicobacter cysteine- RT rich proteins A, B, C, and E in Helicobacter pylori-infected RT individuals."; RL Clin. Diagn. Lab. Immunol. 10:542-545(2003). RN [3] RP X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS), AND FUNCTION. RX PubMed=11777911; DOI=10.1074/jbc.M108993200; RA Luethy L., Gruetter M.G., Mittl P.R.E.; RT "The crystal structure of Helicobacter pylori cysteine-rich protein B RT reveals a novel fold for a penicillin-binding protein."; RL J. Biol. Chem. 277:10187-10193(2002). CC -!- FUNCTION: Hydrolyzes 6-aminopenicillinic acid and 7- CC aminocephalosporanic acid (ACA) derivatives. CC {ECO:0000269|PubMed:11777911}. CC -!- CATALYTIC ACTIVITY: A beta-lactam + H(2)O = a substituted beta- CC amino acid. CC -!- MISCELLANEOUS: Antibodies against HcpB are present in sera from CC human patients infected by Helicobacter pylori. CC -!- SIMILARITY: Belongs to the hcp beta-lactamase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 3 TPR repeats. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07408.1; -; Genomic_DNA. DR PIR; H64561; H64561. DR RefSeq; WP_001862988.1; NC_018939.1. DR PDB; 1KLX; X-ray; 1.95 A; A=1-138. DR PDBsum; 1KLX; -. DR ProteinModelPortal; O25103; -. DR SMR; O25103; 3-135. DR DIP; DIP-3342N; -. DR IntAct; O25103; 50. DR MINT; MINT-160080; -. DR STRING; 85962.HP0336; -. DR PaxDb; O25103; -. DR PRIDE; O25103; -. DR EnsemblBacteria; AAD07408; AAD07408; HP_0336. DR PATRIC; 20591907; VBIHelPyl33062_0350. DR eggNOG; COG0790; LUCA. DR OMA; AAQYYSK; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP0336-MONOMER; -. DR EvolutionaryTrace; O25103; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008800; F:beta-lactamase activity; IDA:CACAO. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF08238; Sel1; 4. DR SMART; SM00671; SEL1; 3. PE 1: Evidence at protein level; KW 3D-structure; Antibiotic resistance; Complete proteome; KW Disulfide bond; Hydrolase; Reference proteome; Repeat; TPR repeat. FT CHAIN 1 138 Beta-lactamase HcpB. FT /FTId=PRO_0000221379. FT REPEAT 1 28 TPR 1. FT REPEAT 57 94 TPR 2. FT REPEAT 97 130 TPR 3. FT DISULFID 22 30 FT DISULFID 52 60 FT DISULFID 88 96 FT DISULFID 124 132 FT HELIX 7 23 {ECO:0000244|PDB:1KLX}. FT HELIX 29 34 {ECO:0000244|PDB:1KLX}. FT HELIX 41 53 {ECO:0000244|PDB:1KLX}. FT HELIX 57 69 {ECO:0000244|PDB:1KLX}. FT STRAND 71 73 {ECO:0000244|PDB:1KLX}. FT HELIX 77 89 {ECO:0000244|PDB:1KLX}. FT HELIX 93 105 {ECO:0000244|PDB:1KLX}. FT STRAND 107 109 {ECO:0000244|PDB:1KLX}. FT HELIX 113 125 {ECO:0000244|PDB:1KLX}. FT HELIX 129 134 {ECO:0000244|PDB:1KLX}. SQ SEQUENCE 138 AA; 15346 MW; 4149505C1BE623B1 CRC64; MVGGGTVKKD LKKAIQYYVK ACELNEMFGC LSLVSNSQIN KQKLFQYLSK ACELNSGNGC RFLGDFYENG KYVKKDLRKA AQYYSKACGL NDQDGCLILG YKQYAGKGVV KNEKQAVKTF EKACRLGSED ACGILNNY // ID HCPD_HELPY Reviewed; 306 AA. AC O24968; DT 15-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Putative beta-lactamase HcpD; DE EC=3.5.2.6; DE AltName: Full=Cysteine-rich protein D; DE AltName: Full=Penicillin-binding protein 4; DE Short=PBP 4; DE Flags: Precursor; GN Name=hcpD; OrderedLocusNames=HP_0160; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP PENICILLIN-BINDING. RX PubMed=10438788; RA Krishnamurthy P., Parlow M.H., Schneider J., Burroughs S., RA Wickland C., Vakil N.B., Dunn B.E., Phadnis S.H.; RT "Identification of a novel penicillin-binding protein from RT Helicobacter pylori."; RL J. Bacteriol. 181:5107-5110(1999). CC -!- FUNCTION: May hydrolyze 6-aminopenicillinic acid and 7- CC aminocephalosporanic acid (ACA) derivatives (By similarity). Binds CC to penicillin. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: A beta-lactam + H(2)O = a substituted beta- CC amino acid. CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000250}. CC -!- SIMILARITY: Belongs to the hcp beta-lactamase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 4 TPR repeats. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07230.1; -; Genomic_DNA. DR PIR; H64539; H64539. DR RefSeq; NP_206959.1; NC_000915.1. DR RefSeq; WP_000597856.1; NC_018939.1. DR ProteinModelPortal; O24968; -. DR STRING; 85962.HP0160; -. DR PaxDb; O24968; -. DR PRIDE; O24968; -. DR EnsemblBacteria; AAD07230; AAD07230; HP_0160. DR GeneID; 900146; -. DR KEGG; heo:C694_00800; -. DR KEGG; hpy:HP0160; -. DR PATRIC; 20591541; VBIHelPyl33062_0170. DR eggNOG; ENOG4105EUU; Bacteria. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; NLYKKGC; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP0160-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0008800; F:beta-lactamase activity; IEA:UniProtKB-EC. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF08238; Sel1; 7. DR SMART; SM00671; SEL1; 7. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 1: Evidence at protein level; KW Antibiotic resistance; Complete proteome; Disulfide bond; Hydrolase; KW Reference proteome; Repeat; Secreted; Signal; TPR repeat. FT SIGNAL 1 25 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 26 306 Putative beta-lactamase HcpD. FT /FTId=PRO_0000013198. FT REPEAT 28 61 TPR 1. FT REPEAT 96 133 TPR 2. FT REPEAT 168 205 TPR 3. FT REPEAT 240 277 TPR 4. FT DISULFID 55 63 {ECO:0000255}. FT DISULFID 91 99 {ECO:0000255}. FT DISULFID 127 135 {ECO:0000255}. FT DISULFID 163 171 {ECO:0000255}. FT DISULFID 199 207 {ECO:0000255}. FT DISULFID 235 243 {ECO:0000255}. FT DISULFID 271 279 {ECO:0000255}. SQ SEQUENCE 306 AA; 34097 MW; D3BDE25CA3009B87 CRC64; MIKSWTKKWF LILFLMASCS SYLVATTGEK YFKMATQAFK RGDYHKAVAF YKRSCNLRVG VGCTSLGSMY EDGDGVDQNI TKAVFYYRRG CNLRNHLACA SLGSMYEDGD GVQKNLPKAI YYYRRGCHLK GGVSCGSLGF MYFNGTGVKQ NYAKALFLSK YACSLNYGIS CNFVGYMYRN AKGVQKDLKK ALANFKRGCH LKDGASCVSL GYMYEVGMDV KQNGEQALNL YKKGCYLKRG SGCHNVAVMY YTGKGVPKDL DKAISYYKKG CTLGFSGSCK VLEEVIGKKS DDLQDDAQND TQDDMQ // ID HEMN_HELPY Reviewed; 457 AA. AC O25376; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase; DE Short=CPO; DE EC=1.3.99.22; DE AltName: Full=Coproporphyrinogen III dehydrogenase; DE Short=CPDH; GN Name=hemN; OrderedLocusNames=HP_0665; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the heme biosynthesis. Catalyzes the CC anaerobic oxidative decarboxylation of propionate groups of rings CC A and B of coproporphyrinogen-III to yield the vinyl groups in CC protoporphyrinogen-IX (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Coproporphyrinogen-III + 2 S-adenosyl-L- CC methionine = protoporphyrinogen-IX + 2 CO(2) + 2 L-methionine + 2 CC 5'-deoxyadenosine. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000250}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000250}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III CC (AdoMet route): step 1/1. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the anaerobic coproporphyrinogen-III CC oxidase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07727.1; -; Genomic_DNA. DR PIR; A64603; A64603. DR RefSeq; NP_207459.1; NC_000915.1. DR RefSeq; WP_001193216.1; NC_018939.1. DR ProteinModelPortal; O25376; -. DR IntAct; O25376; 2. DR MINT; MINT-185799; -. DR STRING; 85962.HP0665; -. DR PaxDb; O25376; -. DR PRIDE; O25376; -. DR EnsemblBacteria; AAD07727; AAD07727; HP_0665. DR GeneID; 899306; -. DR KEGG; heo:C694_03440; -. DR KEGG; hpy:HP0665; -. DR PATRIC; 20592615; VBIHelPyl33062_0696. DR eggNOG; ENOG4105D4P; Bacteria. DR eggNOG; COG0635; LUCA. DR KO; K02495; -. DR OMA; CEIDPRH; -. DR OrthoDB; EOG683S9D; -. DR BioCyc; HPY:HP0665-MONOMER; -. DR UniPathway; UPA00251; UER00323. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; ISS:UniProtKB. DR GO; GO:0051989; F:coproporphyrinogen dehydrogenase activity; ISS:UniProtKB. DR GO; GO:0004109; F:coproporphyrinogen oxidase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006779; P:porphyrin-containing compound biosynthetic process; ISS:UniProtKB. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; ISS:UniProtKB. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR004558; Coprogen_oxidase_HemN. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR010723; HemN_C. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR Pfam; PF06969; HemN_C; 1. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF000167; HemN; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00538; hemN; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; KW Metal-binding; Oxidoreductase; Porphyrin biosynthesis; KW Reference proteome; S-adenosyl-L-methionine. FT CHAIN 1 457 Oxygen-independent coproporphyrinogen-III FT oxidase. FT /FTId=PRO_0000109942. FT REGION 114 115 S-adenosyl-L-methionine 2 binding. FT {ECO:0000250}. FT METAL 62 62 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000250}. FT METAL 66 66 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000250}. FT METAL 69 69 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000250}. FT BINDING 56 56 S-adenosyl-L-methionine 1. {ECO:0000250}. FT BINDING 68 68 S-adenosyl-L-methionine 2; via carbonyl FT oxygen. {ECO:0000250}. FT BINDING 113 113 S-adenosyl-L-methionine 1; via amide FT nitrogen and carbonyl oxygen. FT {ECO:0000250}. FT BINDING 147 147 S-adenosyl-L-methionine 1. {ECO:0000250}. FT BINDING 174 174 S-adenosyl-L-methionine 2. {ECO:0000250}. FT BINDING 186 186 S-adenosyl-L-methionine 2. {ECO:0000250}. FT BINDING 211 211 S-adenosyl-L-methionine 2. {ECO:0000250}. SQ SEQUENCE 457 AA; 53246 MW; 2578727AEFDE1218 CRC64; MQTIDFEKFS QYSKPGPRYT SYPTAVEFNE NFNEESLKTA FFNHDNLKNP MPLSLYTHLP FCRSACYFCA CSVIYTSLEE KKIRYISYLK KELALLKNAM DTNREVAQFH YGGGTPTFFS PIQLDEITQS IQEVFPNFSK DIEMSCEIDP RHFTKEHMQT LFDRGFNRLS FGVQDFDFEV QKAIHRIQPF EMVQESVKLA RDYGIKSINF DLIYGLPNQT KEGFLKTLEW VLKLDPDRLA VFNYAHVPWV KKTMRKIDET LLPSLRDKLE ILESLISFLE KANYQMIGMD HFAKSDNELY LALQKAELRR NFQGYTTKKF TQTIGIGVTS IGEGGDYYTQ NYKDLHHYEK ALDLGHLPVE RGVALSQEDV LRKEVIMQMM SNLKLDYSKI EEKFSVDFKA HFKKELEKLK PYEEAGLLSF NSKGFEMTKT GGMLVRNMAM EFDAYLRGGE KHFSKTL // ID HPPK_HELPY Reviewed; 163 AA. AC O25680; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; DE EC=2.7.6.3; DE AltName: Full=6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase; DE Short=PPPK; DE AltName: Full=7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; DE Short=HPPK; GN Name=folK; OrderedLocusNames=HP_1036; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + 6-hydroxymethyl-7,8-dihydropterin = AMP CC + 6-hydroxymethyl-7,8-dihydropterin diphosphate. CC -!- PATHWAY: Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2- CC amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate CC from 7,8-dihydroneopterin triphosphate: step 4/4. CC -!- SIMILARITY: Belongs to the HPPK family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08079.1; -; Genomic_DNA. DR PIR; D64649; D64649. DR RefSeq; NP_207826.1; NC_000915.1. DR RefSeq; WP_000984302.1; NC_000915.1. DR ProteinModelPortal; O25680; -. DR STRING; 85962.HP1036; -. DR PaxDb; O25680; -. DR PRIDE; O25680; -. DR EnsemblBacteria; AAD08079; AAD08079; HP_1036. DR GeneID; 899571; -. DR KEGG; heo:C694_05360; -. DR KEGG; hpy:HP1036; -. DR PATRIC; 20593409; VBIHelPyl33062_1085. DR eggNOG; ENOG4105K8U; Bacteria. DR eggNOG; COG0801; LUCA. DR KO; K00950; -. DR OMA; QVILRQN; -. DR OrthoDB; EOG65J58J; -. DR BioCyc; HPY:HP1036-MONOMER; -. DR UniPathway; UPA00077; UER00155. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003848; F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0046656; P:folic acid biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0046654; P:tetrahydrofolate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.70.560; -; 1. DR InterPro; IPR000550; Hppk. DR Pfam; PF01288; HPPK; 1. DR SUPFAM; SSF55083; SSF55083; 1. DR TIGRFAMs; TIGR01498; folK; 1. DR PROSITE; PS00794; HPPK; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Folate biosynthesis; Kinase; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 163 2-amino-4-hydroxy-6- FT hydroxymethyldihydropteridine FT pyrophosphokinase. FT /FTId=PRO_0000168251. SQ SEQUENCE 163 AA; 19282 MW; CAA7CC2302E35CA7 CRC64; MMREILTSRF FPSLFKKRLD FSNRVVLGLG SNLKNPLKIL KNCFLYFKNH SKIGKIFSSP IYINPPFGYT KQPNFYNATI ILKTSLSLRH FFALVFYIER RFGRQRKRDF KDAPRTLDID IIAFNQVILR QNDLALPHPK WSERDSVLVP LALQQILFKK GEW // ID HLDE_HELPY Reviewed; 461 AA. AC O25529; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Bifunctional protein HldE {ECO:0000255|HAMAP-Rule:MF_01603}; DE Includes: DE RecName: Full=D-beta-D-heptose 7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; DE EC=2.7.1.167 {ECO:0000255|HAMAP-Rule:MF_01603}; DE AltName: Full=D-beta-D-heptose 7-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_01603}; DE AltName: Full=D-glycero-beta-D-manno-heptose-7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; DE Includes: DE RecName: Full=D-beta-D-heptose 1-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_01603}; DE EC=2.7.7.70 {ECO:0000255|HAMAP-Rule:MF_01603}; DE AltName: Full=D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_01603}; GN Name=hldE {ECO:0000255|HAMAP-Rule:MF_01603}; Synonyms=rfaE, waaE; GN OrderedLocusNames=HP_0858; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of D-glycero-D-manno- CC heptose 7-phosphate at the C-1 position to selectively form D- CC glycero-beta-D-manno-heptose-1,7-bisphosphate. {ECO:0000255|HAMAP- CC Rule:MF_01603}. CC -!- FUNCTION: Catalyzes the ADP transfer from ATP to D-glycero-beta-D- CC manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- CC heptose. {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- CATALYTIC ACTIVITY: D-glycero-beta-D-manno-heptose 7-phosphate + CC ATP = D-glycero-beta-D-manno-heptose 1,7-bisphosphate + ADP. CC {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- CATALYTIC ACTIVITY: D-glycero-beta-D-manno-heptose 1-phosphate + CC ATP = ADP-D-glycero-beta-D-manno-heptose + diphosphate. CC {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- PATHWAY: Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D- CC manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose CC from D-glycero-beta-D-manno-heptose 7-phosphate: step 1/4. CC {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- PATHWAY: Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D- CC manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose CC from D-glycero-beta-D-manno-heptose 7-phosphate: step 3/4. CC {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS core CC biosynthesis. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- SIMILARITY: In the N-terminal section; belongs to the carbohydrate CC kinase PfkB family. {ECO:0000255|HAMAP-Rule:MF_01603}. CC -!- SIMILARITY: In the C-terminal section; belongs to the CC cytidylyltransferase family. {ECO:0000255|HAMAP-Rule:MF_01603}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07904.1; -; Genomic_DNA. DR PIR; B64627; B64627. DR RefSeq; NP_207652.1; NC_000915.1. DR RefSeq; WP_000723047.1; NC_018939.1. DR ProteinModelPortal; O25529; -. DR DIP; DIP-3359N; -. DR IntAct; O25529; 3. DR MINT; MINT-182668; -. DR STRING; 85962.HP0858; -. DR PaxDb; O25529; -. DR PRIDE; O25529; -. DR EnsemblBacteria; AAD07904; AAD07904; HP_0858. DR GeneID; 899387; -. DR KEGG; heo:C694_04395; -. DR KEGG; hpy:HP0858; -. DR PATRIC; 20593005; VBIHelPyl33062_0890. DR eggNOG; ENOG4105DW0; Bacteria. DR eggNOG; COG2870; LUCA. DR KO; K03272; -. DR OMA; EACYLAN; -. DR OrthoDB; EOG68Q0W4; -. DR BioCyc; HPY:HP0858-MONOMER; -. DR UniPathway; UPA00356; UER00437. DR UniPathway; UPA00356; UER00439. DR UniPathway; UPA00958; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0033785; F:heptose 7-phosphate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0033786; F:heptose-1-phosphate adenylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016773; F:phosphotransferase activity, alcohol group as acceptor; IEA:InterPro. DR GO; GO:0097171; P:ADP-L-glycero-beta-D-manno-heptose biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009244; P:lipopolysaccharide core region biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1190.20; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_01603; HldE; 1. DR InterPro; IPR023030; Bifunc_HldE. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR011611; PfkB_dom. DR InterPro; IPR011913; RfaE_dom_I. DR InterPro; IPR011914; RfaE_dom_II. DR InterPro; IPR029056; Ribokinase-like. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR Pfam; PF00294; PfkB; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. DR TIGRFAMs; TIGR02198; rfaE_dom_I; 1. DR TIGRFAMs; TIGR02199; rfaE_dom_II; 1. PE 3: Inferred from homology; KW ATP-binding; Carbohydrate metabolism; Complete proteome; Kinase; KW Lipopolysaccharide biosynthesis; Multifunctional enzyme; KW Nucleotide-binding; Nucleotidyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 461 Bifunctional protein HldE. FT /FTId=PRO_0000080115. FT NP_BIND 191 194 ATP. {ECO:0000255|HAMAP-Rule:MF_01603}. FT REGION 1 315 Ribokinase. FT REGION 332 461 Cytidylyltransferase. FT ACT_SITE 260 260 {ECO:0000255|HAMAP-Rule:MF_01603}. SQ SEQUENCE 461 AA; 50689 MW; FB6A42A5301C16A5 CRC64; MKKILVIGDL IADYYLWGKS ERLSPEAPVP VLEVQRESKN LGGAANVANN LISLKAKVFL CGVVGDDLEG EHFISALKAR GIDASGILID KTRCTTLKTR IIAQNQQIAR VDKEIKDPLN ADLRKKLLDF FTEKIQEIDG VILSDYNKGV LDFELTQAMI ALANQHHKLI LCDPKGKDYS KYSHASLITP NRTELEHALH LKLDSHANLS KALQILKETY HIAMPLVTLS EQGIAFLEKG ELVNCPTIAK EVYDVTGAGD TVIASLTLSL LESMSLKDAC EFANAAAAVV VGKMGSALAS LEEIALILNQ THPKILSLEK LLETLDQQKI IFTNGCFDLL HKGHASYLQK AKALGDILIV GLNSDASIKR LKGDKRPIVS EKDRAFLLAS LSCVDYVVVF EEDTPIKLIQ ALKPDILVKG ADYLNKEVIG SEFAKETHLM EFEEGYSTSA IIEKIKRTCN D // ID HSLU_HELPY Reviewed; 443 AA. AC O25254; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; DE AltName: Full=Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; GN Name=hslU {ECO:0000255|HAMAP-Rule:MF_00249}; GN OrderedLocusNames=HP_0516; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: ATPase subunit of a proteasome-like degradation complex; CC this subunit has chaperone activity. The binding of ATP and its CC subsequent hydrolysis by HslU are essential for unfolding of CC protein substrates subsequently hydrolyzed by HslV. HslU CC recognizes the N-terminal part of its protein substrates and CC unfolds these before they are guided to HslV for hydrolysis. CC {ECO:0000255|HAMAP-Rule:MF_00249}. CC -!- SUBUNIT: A double ring-shaped homohexamer of HslV is capped on CC each side by a ring-shaped HslU homohexamer. The assembly of the CC HslU/HslV complex is dependent on binding of ATP. CC {ECO:0000255|HAMAP-Rule:MF_00249}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00249}. CC -!- SIMILARITY: Belongs to the ClpX chaperone family. HslU subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00249}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07584.1; -; Genomic_DNA. DR PIR; D64584; D64584. DR RefSeq; NP_207313.1; NC_000915.1. DR RefSeq; WP_000040764.1; NC_018939.1. DR ProteinModelPortal; O25254; -. DR SMR; O25254; 6-109. DR STRING; 85962.HP0516; -. DR PaxDb; O25254; -. DR PRIDE; O25254; -. DR EnsemblBacteria; AAD07584; AAD07584; HP_0516. DR GeneID; 898758; -. DR KEGG; hpy:HP0516; -. DR PATRIC; 20592309; VBIHelPyl33062_0543. DR eggNOG; ENOG4105C4N; Bacteria. DR eggNOG; COG1220; LUCA. DR KO; K03667; -. DR OMA; RLHTTIE; -. DR OrthoDB; EOG6NPM7G; -. DR BioCyc; HPY:HP0516-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009376; C:HslUV protease complex; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070011; F:peptidase activity, acting on L-amino acid peptides; IEA:InterPro. DR GO; GO:0043335; P:protein unfolding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00249; HslU; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR019489; Clp_ATPase_C. DR InterPro; IPR004491; HslU. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11262:SF3; PTHR11262:SF3; 2. DR Pfam; PF07724; AAA_2; 2. DR Pfam; PF10431; ClpB_D2-small; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM01086; ClpB_D2-small; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00390; hslU; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Complete proteome; Cytoplasm; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 443 ATP-dependent protease ATPase subunit FT HslU. FT /FTId=PRO_0000160509. FT NP_BIND 62 67 ATP. {ECO:0000255|HAMAP-Rule:MF_00249}. FT BINDING 20 20 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00249}. FT BINDING 255 255 ATP. {ECO:0000255|HAMAP-Rule:MF_00249}. FT BINDING 321 321 ATP. {ECO:0000255|HAMAP-Rule:MF_00249}. FT BINDING 393 393 ATP. {ECO:0000255|HAMAP-Rule:MF_00249}. SQ SEQUENCE 443 AA; 50191 MW; 96860817032097E9 CRC64; MSKLNMTPRE IVAYLDEYII GQKEAKKSIA IAFRNRYRRL QLEKSLQEEI TPKNILMIGS TGVGKTEIAR RIAKIMELPF VKVEASKYTE VGFVGRDVES MVRDLVNNSV LLVENEHKEK LKDKIEEAVI EKIAKKLLPP LPNGVSEEKK QEYANSLLKM QQRIAQGELD SREIEIEVRK KSIEIDSNVP PEILRVQENL IKVFHKEQDK VKKTLSVKEA KEALKAEISD TLLDSEAIKM EGLKRAESSG VIFIDEIDKI AVSSKEGSRQ DPSKEGVQRD LLPIVEGSVV NTKYGSIKTE HILFIAAGAF HLSKPSDLIP ELQGRFPLRV ELENLTEEIM YMILTQTKTS IIKQYQALLK VEGVEIAFED DAIKELAKLS YNANQKSEDI GARRLHTTIE KVLEDISFEA EDYSGQNVTI TKELVQSKLE DLVADENLVK YIL // ID HMCT_HELPY Reviewed; 686 AA. AC Q59465; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 13-APR-2016, entry version 125. DE RecName: Full=Cadmium, zinc and cobalt-transporting ATPase; DE EC=3.6.3.3; DE EC=3.6.3.5; GN Name=cadA; OrderedLocusNames=HP_0791; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=69A; RX PubMed=8550601; DOI=10.1074/jbc.271.1.446; RA Melchers K., Weitzenegger T., Buhmann A., Steinhilber W., Sachs G., RA Schaefer K.P.; RT "Cloning and membrane topology of a P type ATPase from Helicobacter RT pylori."; RL J. Biol. Chem. 271:446-457(1996). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP TOPOLOGY. RC STRAIN=69A; RX PubMed=10417643; DOI=10.1046/j.1365-2958.1999.01496.x; RA Herrmann L., Schwan D., Garner R., Mobley H.L., Haas R., RA Schaefer K.P., Melchers K.; RT "Helicobacter pylori cadA encodes an essential Cd(II)-Zn(II)-Co(II) RT resistance factor influencing urease activity."; RL Mol. Microbiol. 33:524-536(1999). RN [4] RP SUBSTRATE SPECIFICITY. RC STRAIN=69A; RX PubMed=10577484; DOI=10.1016/S0923-2508(99)00106-0; RA Melchers K., Schuhmacher A., Buhmann A., Weitzenegger T., Belin D., RA Grau S., Ehrmann M.; RT "Membrane topology of CadA homologous P-type ATPase of Helicobacter RT pylori as determined by expression of phoA fusions in Escherichia coli RT and the positive inside rule."; RL Res. Microbiol. 150:507-520(1999). CC -!- FUNCTION: Couples the hydrolysis of ATP with the transport of CC cadmium, zinc and cobalt out of the cell. This ion efflux may CC influence the activity of urease, which is essential for the CC survival of the bacterium in the gastric environment. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + Cd(2+)(In) = ADP + phosphate + CC Cd(2+)(Out). CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + Zn(2+)(In) = ADP + phosphate + CC Zn(2+)(Out). CC -!- SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. CC -!- SIMILARITY: Belongs to the cation transport ATPase (P-type) CC (TC 3.A.3) family. Type IB subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 HMA domain. {ECO:0000255|PROSITE- CC ProRule:PRU00280}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; L46864; AAA93043.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07839.1; -; Genomic_DNA. DR PIR; G64618; G64618. DR RefSeq; NP_207584.1; NC_000915.1. DR RefSeq; WP_001158808.1; NC_018939.1. DR ProteinModelPortal; Q59465; -. DR DIP; DIP-3082N; -. DR IntAct; Q59465; 3. DR MINT; MINT-188226; -. DR STRING; 85962.HP0791; -. DR TCDB; 3.A.3.6.3; the p-type atpase (p-atpase) superfamily. DR PaxDb; Q59465; -. DR PRIDE; Q59465; -. DR DNASU; 899347; -. DR EnsemblBacteria; AAD07839; AAD07839; HP_0791. DR GeneID; 899347; -. DR KEGG; heo:C694_04055; -. DR KEGG; hpy:HP0791; -. DR PATRIC; 20592869; VBIHelPyl33062_0823. DR eggNOG; ENOG4105C59; Bacteria. DR eggNOG; COG2217; LUCA. DR KO; K01534; -. DR OMA; QKACEEM; -. DR OrthoDB; EOG6742RM; -. DR BioCyc; HPY:HP0791-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008551; F:cadmium-exporting ATPase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016463; F:zinc-exporting ATPase activity; IEA:UniProtKB-EC. DR GO; GO:0030001; P:metal ion transport; IMP:CACAO. DR Gene3D; 2.70.150.10; -; 1. DR Gene3D; 3.40.1110.10; -; 1. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR023299; ATPase_P-typ_cyto_domN. DR InterPro; IPR018303; ATPase_P-typ_P_site. DR InterPro; IPR008250; ATPase_P-typ_transduc_dom_A. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR017969; Heavy-metal-associated_CS. DR InterPro; IPR006121; HMA_dom. DR InterPro; IPR027256; P-typ_ATPase_IB. DR InterPro; IPR001757; P_typ_ATPase. DR Pfam; PF00122; E1-E2_ATPase; 1. DR Pfam; PF00403; HMA; 1. DR PRINTS; PR00941; CDATPASE. DR SUPFAM; SSF55008; SSF55008; 1. DR SUPFAM; SSF56784; SSF56784; 2. DR TIGRFAMs; TIGR01525; ATPase-IB_hvy; 1. DR TIGRFAMs; TIGR01494; ATPase_P-type; 1. DR PROSITE; PS00154; ATPASE_E1_E2; 1. DR PROSITE; PS01047; HMA_1; 1. DR PROSITE; PS50846; HMA_2; 1. PE 1: Evidence at protein level; KW ATP-binding; Cadmium; Cell membrane; Cobalt; Complete proteome; KW Hydrolase; Magnesium; Membrane; Metal-binding; Nucleotide-binding; KW Phosphoprotein; Reference proteome; Transmembrane; KW Transmembrane helix; Zinc. FT CHAIN 1 686 Cadmium, zinc and cobalt-transporting FT ATPase. FT /FTId=PRO_0000046176. FT TOPO_DOM 1 72 Cytoplasmic. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 73 92 Helical; Name=1. FT TOPO_DOM 93 102 Extracellular. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 103 124 Helical; Name=2. FT TOPO_DOM 125 131 Cytoplasmic. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 132 151 Helical; Name=3. FT TOPO_DOM 152 154 Extracellular. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 155 174 Helical; Name=4. FT TOPO_DOM 175 308 Cytoplasmic. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 309 327 Helical; Name=5. FT TOPO_DOM 328 332 Extracellular. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 333 350 Helical; Name=6. FT TOPO_DOM 351 635 Cytoplasmic. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 636 657 Helical; Name=7. FT TOPO_DOM 658 665 Extracellular. FT {ECO:0000269|PubMed:10417643}. FT TRANSMEM 666 681 Helical; Name=8. FT TOPO_DOM 682 686 Cytoplasmic. FT {ECO:0000269|PubMed:10417643}. FT DOMAIN 1 63 HMA. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT ACT_SITE 388 388 4-aspartylphosphate intermediate. FT {ECO:0000250}. FT METAL 11 11 Cadmium or zinc or cobalt. FT {ECO:0000255|PROSITE-ProRule:PRU00280}. FT METAL 14 14 Cadmium or zinc or cobalt. FT {ECO:0000255|PROSITE-ProRule:PRU00280}. FT METAL 583 583 Magnesium. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT METAL 587 587 Magnesium. {ECO:0000255|PROSITE- FT ProRule:PRU00280}. FT VARIANT 24 24 E -> K (in strain: 69A). FT VARIANT 39 39 K -> R (in strain: 69A). FT VARIANT 69 69 T -> A (in strain: 69A). FT VARIANT 80 80 I -> V (in strain: 69A). FT VARIANT 83 83 M -> A (in strain: 69A). FT VARIANT 148 148 F -> C (in strain: 69A). FT VARIANT 173 174 VS -> IA (in strain: 69A). FT VARIANT 198 198 E -> A (in strain: 69A). FT VARIANT 209 209 V -> I (in strain: 69A). FT VARIANT 228 228 V -> I (in strain: 69A). FT VARIANT 251 251 N -> R (in strain: 69A). FT VARIANT 435 435 K -> E (in strain: 69A). FT VARIANT 456 456 V -> L (in strain: 69A). FT VARIANT 504 504 V -> I (in strain: 69A). FT VARIANT 526 526 V -> A (in strain: 69A). FT VARIANT 555 555 H -> Y (in strain: 69A). SQ SEQUENCE 686 AA; 75012 MW; 8777A49D80397E19 CRC64; MQEYHIHNLD CPDCASKLER DLNELDYVKK AQINFSTSKL FLDTSDFEKV KAFIKQNEPH LSLSFKEATE KPLSFTPLII TIMVFLGAIL ILHLNPSPLI EKAMFFVLAL VYLVSGKDVI LGAFRGLRKG QFFDENALML IATIAAFFVG AYEESVSIMV FYSAGEFLQK LAVSRSKKSL KALVDVAPNL AYLKKGDELV SVAPEDLRVN DIVVVKVGEK VPVDGVVVKG ESLLDERALS GESMPVNVSE NSKVLGGSLN LKAVLEIQVE KMYKDSSIAK VVDLVQQATN EKSETEKFIT KFSRYYTPSV LFIALMIAVL PPLFSMGSFD EWIYRGLVAL MVSCPCALVI SVPLGYFGGV GAASRKGILM KGVHVLEVLT QAKSIAFDKT GTLTKGVFKV TDIVPQNGHS KEEVLHYASC SQLLSTHPIA LSIQKACEEM LKDDKHQHDI KNYEEVSGMG VKAQCHTDLI IAGNEKMLDQ FHIAHSPSKE NGTIVHVAFN QTYVGYIVIS DEIKDDAIEC LRDLKVQGIE NFCILSGDRK SATESIAQTL GCEYHASLLP EEKTSVFKTF KERYKAPAIF VGDGINDAPT LASADVGIGM GKGSELSKQS ADIVITNDSL NSLVKVLAIA KKTKSIIWQN ILFALGIKAV FIVLGLMGVA SLWEAVFGDV GVTLLALANS MRAMRA // ID HPAA_HELPY Reviewed; 260 AA. AC P55969; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Neuraminyllactose-binding hemagglutinin; DE AltName: Full=Flagellar sheath adhesin; DE AltName: Full=N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit; DE Short=NLBH; DE Flags: Precursor; GN Name=hpaA; OrderedLocusNames=HP_0797; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000305}; Lipid- CC anchor {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07844.1; -; Genomic_DNA. DR PIR; E64619; E64619. DR RefSeq; NP_207590.1; NC_000915.1. DR RefSeq; WP_000646667.1; NC_018939.1. DR ProteinModelPortal; P55969; -. DR DIP; DIP-3518N; -. DR IntAct; P55969; 7. DR MINT; MINT-168283; -. DR STRING; 85962.HP0797; -. DR PaxDb; P55969; -. DR PRIDE; P55969; -. DR EnsemblBacteria; AAD07844; AAD07844; HP_0797. DR GeneID; 898975; -. DR KEGG; heo:C694_04085; -. DR KEGG; hpy:HP0797; -. DR PATRIC; 20592881; VBIHelPyl33062_0829. DR KO; K15846; -. DR OMA; AFQYSDN; -. DR OrthoDB; EOG6R87D7; -. DR BioCyc; HPY:HP0797-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR007876; NeuraminylLac-bd_hemagglutn. DR Pfam; PF05211; NLBH; 1. DR PIRSF; PIRSF019714; Neuraminyllac-bd_haemagglutn; 1. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 3: Inferred from homology; KW Cell outer membrane; Complete proteome; Lipoprotein; Membrane; KW Palmitate; Reference proteome; Signal. FT SIGNAL 1 27 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 28 260 Neuraminyllactose-binding hemagglutinin. FT /FTId=PRO_0000018100. FT LIPID 28 28 N-palmitoyl cysteine. {ECO:0000305}. FT LIPID 28 28 S-diacylglycerol cysteine. {ECO:0000305}. SQ SEQUENCE 260 AA; 29040 MW; D9F86C8B0556D071 CRC64; MKANNHFKDF AWKKCLLGAS VVALLVGCSP HIIETNEVAL KLNYHPASEK VQALDEKILL LRPAFQYSDN IAKEYENKFK NQTALKVEQI LQNQGYKVIS VDSSDKDDLS FSQKKEGYLA VAMNGEIVLR PDPKRTIQKK SEPGLLFSTG LDKMEGVLIP AGFVKVTILE PMSGESLDSF TMDLSELDIQ EKFLKTTHSS HSGGLVSTMV KGTDNSNDAI KSALNKIFAN IMQEIDKKLT QKNLESYQKD AKELKGKRNR // ID HRCA_HELPY Reviewed; 266 AA. AC O24933; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 09-DEC-2015, entry version 88. DE RecName: Full=Heat-inducible transcription repressor HrcA {ECO:0000255|HAMAP-Rule:MF_00081}; GN Name=hrcA {ECO:0000255|HAMAP-Rule:MF_00081}; GN OrderedLocusNames=HP_0111; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Negative regulator of class I heat shock genes (grpE- CC dnaK-dnaJ and groELS operons). Prevents heat-shock induction of CC these operons. {ECO:0000255|HAMAP-Rule:MF_00081}. CC -!- SIMILARITY: Belongs to the HrcA family. {ECO:0000255|HAMAP- CC Rule:MF_00081}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07182.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07182.1; ALT_INIT; Genomic_DNA. DR PIR; G64533; G64533. DR RefSeq; NP_206911.1; NC_000915.1. DR ProteinModelPortal; O24933; -. DR IntAct; O24933; 1. DR MINT; MINT-166978; -. DR STRING; 85962.HP0111; -. DR PaxDb; O24933; -. DR EnsemblBacteria; AAD07182; AAD07182; HP_0111. DR GeneID; 900159; -. DR KEGG; hpy:HP0111; -. DR PATRIC; 20591437; VBIHelPyl33062_0118. DR eggNOG; COG1420; LUCA. DR KO; K03705; -. DR OMA; IECEKRF; -. DR OrthoDB; EOG632D4G; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR HAMAP; MF_00081; HrcA; 1. DR InterPro; IPR002571; HrcA. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Repressor; Stress response; KW Transcription; Transcription regulation. FT CHAIN 1 266 Heat-inducible transcription repressor FT HrcA. FT /FTId=PRO_0000182483. SQ SEQUENCE 266 AA; 30795 MW; F1A3F7001FF41F03 CRC64; MLRRIKVGSN LNKKESLLDA FVKTYLQILE PISSKRLKEL ADLKISCATI RNYFQILSKE GMLYQAHSSG ARLPTFKAFE NYWQKSLRFE TLKVNEKRLK SASENFGLFT LLKKPSLERL ERVIECEKRF LILDFLAFSC ALGYSVKMEK FLLELVGRSV KEVRSIAASF NALSLARQLE RLEYSNTQIT RFNLMGLKTL LNSPLFFDIL GGKVLERLSK GLHFIEPDCM LVTRPVEFQN KRMQLLCVGK LECDYEGFFQ TISEEE // ID HPN_HELPY Reviewed; 60 AA. AC P0A0V6; Q48251; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 11-NOV-2015, entry version 50. DE RecName: Full=Histidine-rich metal-binding polypeptide; GN Name=hpn; OrderedLocusNames=HP_1427; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 2-19 AND RP 48-60. RC STRAIN=LEU; RX PubMed=7790085; RA Gilbert J.V., Ramakrishna J., Sunderman F.W. Jr., Wright A., RA Plaut A.G.; RT "Protein Hpn: cloning and characterization of a histidine-rich metal- RT binding polypeptide in Helicobacter pylori and Helicobacter RT mustelae."; RL Infect. Immun. 63:2682-2688(1995). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Strongly binds nickel and zinc. Binds other metals less CC strongly: cobalt > copper > cadmium > manganese. May act to CC increase, or at least to preserve, urease activity. Exact function CC is still unknown. CC -!- INTERACTION: CC O25772:HP_1157; NbExp=3; IntAct=EBI-7512037, EBI-7500169; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U26361; AAA85859.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08471.1; -; Genomic_DNA. DR PIR; C64698; C64698. DR ProteinModelPortal; P0A0V6; -. DR IntAct; P0A0V6; 16. DR MINT; MINT-160454; -. DR STRING; 85962.HP1427; -. DR PaxDb; P0A0V6; -. DR EnsemblBacteria; AAD08471; AAD08471; HP_1427. DR KEGG; heo:C694_07380; -. DR OMA; DAHHHEP; -. DR BioCyc; HPY:HP1427-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. PE 1: Evidence at protein level; KW Complete proteome; Direct protein sequencing; Metal-binding; Nickel; KW Reference proteome; Repeat; Zinc. FT INIT_MET 1 1 Removed. {ECO:0000269|PubMed:7790085}. FT CHAIN 2 60 Histidine-rich metal-binding polypeptide. FT /FTId=PRO_0000084044. FT REPEAT 38 42 1. FT REPEAT 51 55 2. FT REGION 38 55 2 X 5 AA repeats of E-E-G-C-C. FT COMPBIAS 11 24 Poly-His. FT COMPBIAS 28 33 Poly-His. SQ SEQUENCE 60 AA; 7077 MW; C3AEE3BB4FECDA71 CRC64; MAHHEEQHGG HHHHHHHTHH HHYHGGEHHH HHHSSHHEEG CCSTSDSHHQ EEGCCHGHHE // ID HTPG_HELPY Reviewed; 621 AA. AC P56116; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 98. DE RecName: Full=Chaperone protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; DE AltName: Full=Heat shock protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; DE AltName: Full=High temperature protein G {ECO:0000255|HAMAP-Rule:MF_00505}; GN Name=htpG {ECO:0000255|HAMAP-Rule:MF_00505}; GN OrderedLocusNames=HP_0210; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Molecular chaperone. Has ATPase activity. CC {ECO:0000255|HAMAP-Rule:MF_00505}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00505}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00505}. CC -!- SIMILARITY: Belongs to the heat shock protein 90 family. CC {ECO:0000255|HAMAP-Rule:MF_00505}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07278.1; -; Genomic_DNA. DR PIR; B64546; B64546. DR RefSeq; NP_207008.1; NC_000915.1. DR RefSeq; WP_000070607.1; NC_018939.1. DR ProteinModelPortal; P56116; -. DR STRING; 85962.HP0210; -. DR PaxDb; P56116; -. DR PRIDE; P56116; -. DR EnsemblBacteria; AAD07278; AAD07278; HP_0210. DR GeneID; 900013; -. DR KEGG; heo:C694_01055; -. DR KEGG; hpy:HP0210; -. DR PATRIC; 20591643; VBIHelPyl33062_0221. DR eggNOG; ENOG4105CJX; Bacteria. DR eggNOG; COG0326; LUCA. DR KO; K04079; -. DR OMA; YLRFMRG; -. DR OrthoDB; EOG65TRNM; -. DR BioCyc; HPY:HP0210-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.30.565.10; -; 1. DR HAMAP; MF_00505; HSP90; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR019805; Heat_shock_protein_90_CS. DR InterPro; IPR001404; Hsp90_fam. DR InterPro; IPR020575; Hsp90_N. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR PANTHER; PTHR11528; PTHR11528; 1. DR Pfam; PF00183; HSP90; 1. DR PIRSF; PIRSF002583; Hsp90; 1. DR PRINTS; PR00775; HEATSHOCK90. DR SMART; SM00387; HATPase_c; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS00298; HSP90; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Complete proteome; Cytoplasm; KW Nucleotide-binding; Reference proteome; Stress response. FT CHAIN 1 621 Chaperone protein HtpG. FT /FTId=PRO_0000062992. FT REGION 1 341 A; substrate-binding. {ECO:0000255|HAMAP- FT Rule:MF_00505}. FT REGION 342 547 B. {ECO:0000255|HAMAP-Rule:MF_00505}. FT REGION 548 621 C. {ECO:0000255|HAMAP-Rule:MF_00505}. SQ SEQUENCE 621 AA; 71274 MW; 28F198C1DC7EAB9A CRC64; MSNQEYTFQT EINQLLDLMI HSLYSNKEIF LRELVSNASD ALDKLNYLML TDEKLKGLNT TPSIHLSFDS QKKTLTIKDN GIGMDKNDLI EHLGTIAKSG TKNFLSALSG DKKKDSALIG QFGVGFYSAF MVASKIVVQT KKVNSDQAYA WVSDGKGKFE ISECVKDEQG TEITLFLKDE DSHFASRWEI DSVVKKYSEH IPFPIFLTYT DTKHEGEGDN QKEIKEEKCE QINQASALWK MNKSELKDKD YKEFYQSFAH DNSEPLSYIH NKVEGSLEYT TLFYIPSTAP FDMFRVDYKS GVKLYVKRVF ITDDDKELLP SYLRFVKGVI DSEDLPLNVS REILQQNKIL ANIRSASVKK ILSEIERLSK DEKNYHKFYE PFGKVLKEGL YGDFENKEKL LELLRFYSKD KEKLISLKEY KENLKENQKS IYYLLGENLD LLKASPLLEK YAQKGYDVLL LSDEIDAFVM PGVNEYDKTP FKDASHSESL KELGLEEIHD EVKDQFKDLM KAFEENLKDE IKGVELSSHL TSAVALIGDE QNAMMANWMR QMGQSVPESK KTLELNPNHA ILQKLLKCED KEQLSAFIWL LYDGAKLLEK GALKDAKSFN ERLNSVLLKA L // ID HYPA_HELPY Reviewed; 117 AA. AC P0A0U4; O25539; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 11-NOV-2015, entry version 61. DE RecName: Full=Hydrogenase/urease nickel incorporation protein HypA; GN Name=hypA; OrderedLocusNames=HP_0869; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CHARACTERIZATION. RC STRAIN=ATCC 43504; RX PubMed=11123699; DOI=10.1046/j.1365-2958.2001.02244.x; RA Olson J.W., Mehta N.S., Maier R.J.; RT "Requirement of nickel metabolism proteins HypA and HypB for full RT activity of both hydrogenase and urease in Helicobacter pylori."; RL Mol. Microbiol. 39:176-182(2001). CC -!- FUNCTION: Plays a role in both the hydrogenase and the urease CC nickel cofactor insertion step. CC -!- SIMILARITY: Belongs to the HypA/HybF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07910.1; -; Genomic_DNA. DR PIR; E64628; E64628. DR RefSeq; NP_207663.1; NC_000915.1. DR RefSeq; WP_000545280.1; NC_018939.1. DR PDB; 2KDX; NMR; -; A=1-117. DR PDBsum; 2KDX; -. DR ProteinModelPortal; P0A0U4; -. DR IntAct; P0A0U4; 19. DR MINT; MINT-165058; -. DR STRING; 85962.HP0869; -. DR PaxDb; P0A0U4; -. DR PRIDE; P0A0U4; -. DR DNASU; 899398; -. DR EnsemblBacteria; AAD07910; AAD07910; HP_0869. DR GeneID; 899398; -. DR KEGG; heo:C694_04450; -. DR KEGG; hpy:HP0869; -. DR PATRIC; 20593027; VBIHelPyl33062_0901. DR eggNOG; ENOG4105WMM; Bacteria. DR eggNOG; COG0375; LUCA. DR KO; K04651; -. DR OMA; HALANHA; -. DR OrthoDB; EOG6QVRK2; -. DR BioCyc; HPY:HP0869-MONOMER; -. DR EvolutionaryTrace; P0A0U4; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006464; P:cellular protein modification process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00213; HypA; 1. DR InterPro; IPR000688; Hydgase_Ni_incorp_HypA/HybF. DR InterPro; IPR020538; Hydgase_Ni_incorp_HypA/HybF_CS. DR Pfam; PF01155; HypA; 1. DR PIRSF; PIRSF004761; Hydrgn_mat_HypA; 1. DR TIGRFAMs; TIGR00100; hypA; 1. DR PROSITE; PS01249; HYPA; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Metal-binding; Nickel; KW Reference proteome. FT CHAIN 1 117 Hydrogenase/urease nickel incorporation FT protein HypA. FT /FTId=PRO_0000129042. FT METAL 2 2 Nickel. {ECO:0000255}. FT METAL 74 74 Nickel. {ECO:0000255}. FT METAL 77 77 Nickel. {ECO:0000255}. FT METAL 91 91 Nickel. {ECO:0000255}. FT METAL 94 94 Nickel. {ECO:0000255}. FT HELIX 2 20 {ECO:0000244|PDB:2KDX}. FT STRAND 28 34 {ECO:0000244|PDB:2KDX}. FT HELIX 41 51 {ECO:0000244|PDB:2KDX}. FT HELIX 52 54 {ECO:0000244|PDB:2KDX}. FT TURN 56 58 {ECO:0000244|PDB:2KDX}. FT STRAND 63 68 {ECO:0000244|PDB:2KDX}. FT STRAND 71 73 {ECO:0000244|PDB:2KDX}. FT STRAND 75 78 {ECO:0000244|PDB:2KDX}. FT STRAND 92 96 {ECO:0000244|PDB:2KDX}. FT STRAND 100 105 {ECO:0000244|PDB:2KDX}. FT STRAND 108 113 {ECO:0000244|PDB:2KDX}. SQ SEQUENCE 117 AA; 13202 MW; BA67A69E2EC35506 CRC64; MHEYSVVSSL IALCEEHAKK NQAHKIERVV VGIGERSAMD KSLFVSAFET FREESLVCKD AILDIVDEKV ELECKDCSHV FKPNALDYGV CEKCHSKNVI ITQGNEMRLL SLEMLAE // ID IDH_HELPY Reviewed; 425 AA. AC P56063; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 108. DE RecName: Full=Isocitrate dehydrogenase [NADP]; DE Short=IDH; DE EC=1.1.1.42; DE AltName: Full=IDP; DE AltName: Full=NADP(+)-specific ICDH; DE AltName: Full=Oxalosuccinate decarboxylase; GN Name=icd; OrderedLocusNames=HP_0027; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Isocitrate + NADP(+) = 2-oxoglutarate + CO(2) CC + NADPH. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) or Mn(2+) ion per subunit. {ECO:0000250}; CC -!- SIMILARITY: Belongs to the isocitrate and isopropylmalate CC dehydrogenases family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07098.1; -; Genomic_DNA. DR PIR; C64523; C64523. DR RefSeq; NP_206829.1; NC_000915.1. DR RefSeq; WP_000323988.1; NC_018939.1. DR ProteinModelPortal; P56063; -. DR SMR; P56063; 11-425. DR DIP; DIP-3724N; -. DR IntAct; P56063; 1. DR MINT; MINT-180352; -. DR STRING; 85962.HP0027; -. DR PaxDb; P56063; -. DR PRIDE; P56063; -. DR EnsemblBacteria; AAD07098; AAD07098; HP_0027. DR GeneID; 899116; -. DR KEGG; heo:C694_00125; -. DR KEGG; hpy:HP0027; -. DR PATRIC; 20591251; VBIHelPyl33062_0027. DR eggNOG; ENOG4108HMX; Bacteria. DR eggNOG; COG0538; LUCA. DR KO; K00031; -. DR OMA; RDWGYEL; -. DR OrthoDB; EOG6SNDTP; -. DR BioCyc; HPY:HP0027-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004450; F:isocitrate dehydrogenase (NADP+) activity; IEA:UniProtKB-EC. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0006097; P:glyoxylate cycle; IEA:UniProtKB-KW. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. DR Gene3D; 3.40.718.10; -; 1. DR InterPro; IPR019818; IsoCit/isopropylmalate_DH_CS. DR InterPro; IPR001804; Isocitrate/isopropylmalate_DH. DR InterPro; IPR004439; Isocitrate_DH_NADP_dimer_prok. DR InterPro; IPR024084; IsoPropMal-DH-like_dom. DR PANTHER; PTHR11835; PTHR11835; 3. DR Pfam; PF00180; Iso_dh; 1. DR SMART; SM01329; Iso_dh; 1. DR TIGRFAMs; TIGR00183; prok_nadp_idh; 1. DR PROSITE; PS00470; IDH_IMDH; 1. PE 3: Inferred from homology; KW Complete proteome; Glyoxylate bypass; Magnesium; Manganese; KW Metal-binding; NADP; Oxidoreductase; Phosphoprotein; KW Reference proteome; Tricarboxylic acid cycle. FT CHAIN 1 425 Isocitrate dehydrogenase [NADP]. FT /FTId=PRO_0000083552. FT NP_BIND 348 354 NADP. {ECO:0000250}. FT METAL 316 316 Magnesium or manganese. {ECO:0000250}. FT BINDING 114 114 NADP. {ECO:0000250}. FT BINDING 123 123 Substrate. {ECO:0000250}. FT BINDING 125 125 Substrate. {ECO:0000250}. FT BINDING 129 129 Substrate. {ECO:0000250}. FT BINDING 139 139 Substrate. {ECO:0000250}. FT BINDING 162 162 Substrate. {ECO:0000250}. FT BINDING 361 361 NADP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000250}. FT BINDING 400 400 NADP. {ECO:0000250}. FT BINDING 404 404 NADP. {ECO:0000250}. FT SITE 169 169 Critical for catalysis. {ECO:0000250}. FT SITE 239 239 Critical for catalysis. {ECO:0000250}. FT MOD_RES 123 123 Phosphoserine. {ECO:0000250}. SQ SEQUENCE 425 AA; 47531 MW; 3741722B8818DC96 CRC64; MAYNPKILQK PKEGEEITIK DNKLHVPNHP IIPFIEGDGI GSDITPAMIK VVDSAVQKAY KGEKKIAWYE VFVGEKCYQK FKDYKELSPE EQWLLPDTIE AINHYKVSIK GPLTTPIGEG FRSLNVALRQ KMDLYVCLRP VRWYGSPSPV KEPQKVDMVI FRENSEDIYA GIEWQEGSAE AKKLIHFLQN ELKVKKIRFP ESSGIGVKPI SKEGTERLVR KAIEYAIDND KPSVTFVHKG NIMKYTEGAF MKWGYALAQK EFNAQVIDKG PWCSLKNPKN GKEIIIKDMI ADAFLQQILL RPSEYSVIAT MNLNGDYISD ALAAMVGGIG IAPGANLNDT VGMFEATHGT APKYAGLDKV NPGSIILSAE MMLRHMGWVE AADLIVSAME KAIKSKKVTY DFARLMDGAK EVKCSEFASV MIENM // ID HSLV_HELPY Reviewed; 180 AA. AC O25253; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=ATP-dependent protease subunit HslV {ECO:0000255|HAMAP-Rule:MF_00248}; DE EC=3.4.25.2 {ECO:0000255|HAMAP-Rule:MF_00248}; GN Name=hslV {ECO:0000255|HAMAP-Rule:MF_00248}; GN OrderedLocusNames=HP_0515; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Protease subunit of a proteasome-like degradation CC complex believed to be a general protein degrading machinery. CC {ECO:0000255|HAMAP-Rule:MF_00248}. CC -!- CATALYTIC ACTIVITY: ATP-dependent cleavage of peptide bonds with CC broad specificity. {ECO:0000255|HAMAP-Rule:MF_00248}. CC -!- ENZYME REGULATION: Allosterically activated by HslU binding. CC {ECO:0000255|HAMAP-Rule:MF_00248}. CC -!- SUBUNIT: A double ring-shaped homohexamer of HslV is capped on CC each side by a ring-shaped HslU homohexamer. The assembly of the CC HslU/HslV complex is dependent on binding of ATP. CC {ECO:0000255|HAMAP-Rule:MF_00248}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00248}. CC -!- SIMILARITY: Belongs to the peptidase T1B family. HslV subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00248}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07583.1; -; Genomic_DNA. DR PIR; C64584; C64584. DR RefSeq; NP_207312.1; NC_000915.1. DR RefSeq; WP_000461024.1; NC_018939.1. DR ProteinModelPortal; O25253; -. DR DIP; DIP-3441N; -. DR IntAct; O25253; 4. DR MINT; MINT-161682; -. DR STRING; 85962.HP0515; -. DR PaxDb; O25253; -. DR PRIDE; O25253; -. DR EnsemblBacteria; AAD07583; AAD07583; HP_0515. DR GeneID; 900048; -. DR KEGG; heo:C694_02650; -. DR KEGG; hpy:HP0515; -. DR PATRIC; 20592307; VBIHelPyl33062_0542. DR eggNOG; ENOG4108R5P; Bacteria. DR eggNOG; COG5405; LUCA. DR KO; K01419; -. DR OMA; IMKGNAR; -. DR OrthoDB; EOG6ND0PJ; -. DR BioCyc; HPY:HP0515-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009376; C:HslUV protease complex; IEA:UniProtKB-HAMAP. DR GO; GO:0005839; C:proteasome core complex; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:UniProtKB-KW. DR GO; GO:0051603; P:proteolysis involved in cellular protein catabolic process; IEA:InterPro. DR Gene3D; 3.60.20.10; -; 1. DR HAMAP; MF_00248; HslV; 1. DR InterPro; IPR022281; ATP-dep_Prtase_HsIV_su. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR001353; Proteasome_sua/b. DR InterPro; IPR023333; Proteasome_suB-type. DR Pfam; PF00227; Proteasome; 1. DR SUPFAM; SSF56235; SSF56235; 1. DR TIGRFAMs; TIGR03692; ATP_dep_HslV; 1. DR PROSITE; PS51476; PROTEASOME_BETA_2; 1. PE 3: Inferred from homology; KW Allosteric enzyme; Complete proteome; Cytoplasm; Hydrolase; KW Metal-binding; Protease; Reference proteome; Sodium; KW Threonine protease. FT CHAIN 1 180 ATP-dependent protease subunit HslV. FT /FTId=PRO_0000148113. FT ACT_SITE 5 5 {ECO:0000255|HAMAP-Rule:MF_00248}. FT METAL 165 165 Sodium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00248}. FT METAL 168 168 Sodium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00248}. FT METAL 171 171 Sodium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00248}. SQ SEQUENCE 180 AA; 20009 MW; 6AD82D79E52BC05E CRC64; MFEATTILGY RGELNHKKFA LIGGDGQVTL GNCVVKANAT KIRSLYHNQV LSGFAGSTAD AFSLFDMFER ILESKKGDLF KSVVDFSKEW RKDKYLRRLE AMMIVLNFDH IFILSGMGDV LEAEDNKIAA IGSGGNYALS AARALDHFAH LEPRKLVEES LKIAGDLCIY TNTNIKILEL // ID IF1_HELPY Reviewed; 72 AA. AC P65108; P55974; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 2. DT 11-NOV-2015, entry version 71. DE RecName: Full=Translation initiation factor IF-1 {ECO:0000255|HAMAP-Rule:MF_00075}; GN Name=infA {ECO:0000255|HAMAP-Rule:MF_00075}; GN OrderedLocusNames=HP_1298; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the essential components for the initiation of CC protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the CC 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently CC binds. Helps modulate mRNA selection, yielding the 30S pre- CC initiation complex (PIC). Upon addition of the 50S ribosomal CC subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S CC translation initation complex. {ECO:0000255|HAMAP-Rule:MF_00075}. CC -!- SUBUNIT: Component of the 30S ribosomal translation pre-initiation CC complex which assembles on the 30S ribosome in the order IF-2 and CC IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can CC occur at any time during PIC assembly. {ECO:0000255|HAMAP- CC Rule:MF_00075}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00075}. CC -!- SIMILARITY: Belongs to the IF-1 family. {ECO:0000255|HAMAP- CC Rule:MF_00075}. CC -!- SIMILARITY: Contains 1 S1-like domain. {ECO:0000255|HAMAP- CC Rule:MF_00075}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08360.1; -; Genomic_DNA. DR PIR; B64682; B64682. DR RefSeq; NP_208090.1; NC_000915.1. DR RefSeq; WP_000090248.1; NC_018939.1. DR ProteinModelPortal; P65108; -. DR SMR; P65108; 2-72. DR IntAct; P65108; 15. DR MINT; MINT-4074587; -. DR STRING; 85962.HP1298; -. DR PaxDb; P65108; -. DR PRIDE; P65108; -. DR EnsemblBacteria; AAD08360; AAD08360; HP_1298. DR GeneID; 900216; -. DR KEGG; heo:C694_06705; -. DR KEGG; hpy:HP1298; -. DR PATRIC; 20593977; VBIHelPyl33062_1359. DR eggNOG; ENOG4105K9U; Bacteria. DR eggNOG; COG0361; LUCA. DR KO; K02518; -. DR OMA; ECLPNAT; -. DR OrthoDB; EOG6384SC; -. DR BioCyc; HPY:HP1298-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0043022; F:ribosome binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00075; IF_1; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR006196; RNA-binding_domain_S1_IF1. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR004368; TIF_IF1. DR Pfam; PF01176; eIF-1a; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00008; infA; 1. DR PROSITE; PS50832; S1_IF1_TYPE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Initiation factor; Protein biosynthesis; KW Reference proteome; RNA-binding; rRNA-binding. FT INIT_MET 1 1 Removed. {ECO:0000250}. FT CHAIN 2 72 Translation initiation factor IF-1. FT /FTId=PRO_0000095799. FT DOMAIN 2 72 S1-like. {ECO:0000255|HAMAP- FT Rule:MF_00075}. SQ SEQUENCE 72 AA; 8348 MW; EEB44143D56FBF57 CRC64; MARDDVIEVD GKVIEALPNA TFKVELDNKH VVLCRISGKM RMHYIRIALG DRVKLELTPY SLDKGRITFR YK // ID IF2_HELPY Reviewed; 944 AA. AC P55972; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 111. DE RecName: Full=Translation initiation factor IF-2; GN Name=infB; OrderedLocusNames=HP_1048; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the essential components for the initiation of CC protein synthesis. Protects formylmethionyl-tRNA from spontaneous CC hydrolysis and promotes its binding to the 30S ribosomal subunits. CC Also involved in the hydrolysis of GTP during the formation of the CC 70S ribosomal complex (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. IF-2 CC subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08093.1; -; Genomic_DNA. DR PIR; H64650; H64650. DR RefSeq; NP_207839.1; NC_000915.1. DR RefSeq; WP_000016275.1; NC_018939.1. DR ProteinModelPortal; P55972; -. DR SMR; P55972; 846-935. DR DIP; DIP-3291N; -. DR IntAct; P55972; 5. DR MINT; MINT-163944; -. DR STRING; 85962.HP1048; -. DR PaxDb; P55972; -. DR PRIDE; P55972; -. DR EnsemblBacteria; AAD08093; AAD08093; HP_1048. DR GeneID; 899583; -. DR KEGG; heo:C694_05420; -. DR KEGG; hpy:HP1048; -. DR PATRIC; 20593433; VBIHelPyl33062_1097. DR eggNOG; ENOG4107QHU; Bacteria. DR eggNOG; COG0532; LUCA. DR KO; K02519; -. DR OMA; AKNPEQD; -. DR OrthoDB; EOG67HJSV; -. DR BioCyc; HPY:HP1048-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.10050; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00100_B; IF_2_B; 1. DR InterPro; IPR006847; IF2_N. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR000178; TF_IF2_bacterial-like. DR InterPro; IPR023115; TIF_IF2_dom3. DR InterPro; IPR009000; Transl_B-barrel. DR Pfam; PF11987; IF-2; 1. DR Pfam; PF04760; IF2_N; 1. DR SUPFAM; SSF50447; SSF50447; 2. DR SUPFAM; SSF52156; SSF52156; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00487; IF-2; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS51722; G_TR_2; 1. DR PROSITE; PS01176; IF2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Initiation factor; KW Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 944 Translation initiation factor IF-2. FT /FTId=PRO_0000137209. FT DOMAIN 443 612 tr-type G. FT NP_BIND 452 459 GTP. {ECO:0000250}. FT NP_BIND 498 502 GTP. {ECO:0000250}. FT NP_BIND 552 555 GTP. {ECO:0000250}. FT REGION 452 459 G1. {ECO:0000250}. FT REGION 477 481 G2. {ECO:0000250}. FT REGION 498 501 G3. {ECO:0000250}. FT REGION 552 555 G4. {ECO:0000250}. FT REGION 588 590 G5. {ECO:0000250}. SQ SEQUENCE 944 AA; 105195 MW; EC90404D9C3B851D CRC64; MSGMVDLKEF LAELGKTQKE LKNVIEQAKD IGLELKTNSK MTPEQAGKLY KYIVDGIKEQ IQANQPAKNP EQDNKDDLNT AVASKSLNKK VSKTPKKEET KSQPKPKKTK EKKKEAPTPI AKKKGGIEIV NTFENQTPPT ENTPKVVSHS QIEKAKQKLQ EIQKSREALN KLTQSNANNA SNANNAKKEI SEVKKQEQEI KRHENIKRRT GFRVIKRNDE VENESENSVT ESKKPTQSAA AIFEDIKKEW QEKDKQEAKK AKKPSKPKAT PTAKNNKSHK IDFSDARDFK GNDIYDDETD EILLFDLHEQ DNFNKEEEEK EIRQNINDRV RVQRKNPWMN ESGIKRQSKK KRAFRNDNSQ KVIQSTTAIP EEVRVYEFAQ KANLNLADVI KTLFNLGLMV TKNDFLDKDS IEILAEEFHL EISVQNTLEE FEVEEVLEGV KKERPPVVTI MGHVDHGKTS LLDKIRDKRV AHTEAGGITQ HIGAYMVEKN DKWVSFIDTP GHEAFSQMRN RGAQVTDIAV IVIAADDGVK QQTIEALEHA KAANVPVIFA MNKMDKPNVN PDKLKAECAE LGYNPVDWGG EHEFIPVSAK TGDGIDNLLE TILIQAGIME LKAIEEGSAR AVVLEGSVEK GRGAVATVIV QSGTLSVGDS FFAETAFGKV RTMTDDQGKS IQNLKPSMVA LITGLSEVPP AGSVLIGVEN DSIARLQAQK RATYLRQKAL SKSTKVSFDE LSEMVANKEL KNIPVVIKAD TQGSLEAIKN SLLELNNEEV AIQVIHSGVG GITENDLSLV SSSEHAVILG FNIRPTGNVK NKAKEYNVSI KTYTVIYALI EEMRSLLLGL MSPIIEEEHT GQAEVRETFN IPKVGTIAGC VVSDGVIARG IKARLIRDGV VIHTGEILSL KRFKDDVKEV SKGYECGIML DNYNEIKVGD VFETYKEIHK KRTL // ID HTPX_HELPY Reviewed; 310 AA. AC O25582; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 16-MAR-2016, entry version 105. DE RecName: Full=Protease HtpX homolog {ECO:0000255|HAMAP-Rule:MF_00188}; DE EC=3.4.24.- {ECO:0000255|HAMAP-Rule:MF_00188}; GN Name=htpX {ECO:0000255|HAMAP-Rule:MF_00188}; GN OrderedLocusNames=HP_0927; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00188}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00188}; CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00188}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00188}. CC -!- SIMILARITY: Belongs to the peptidase M48B family. CC {ECO:0000255|HAMAP-Rule:MF_00188}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07972.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07972.1; ALT_INIT; Genomic_DNA. DR PIR; G64635; G64635. DR RefSeq; NP_207719.1; NC_000915.1. DR RefSeq; WP_000180871.1; NC_018939.1. DR RefSeq; WP_010875563.1; NC_000915.1. DR ProteinModelPortal; O25582; -. DR STRING; 85962.HP0927; -. DR PaxDb; O25582; -. DR EnsemblBacteria; AAD07972; AAD07972; HP_0927. DR GeneID; 899456; -. DR KEGG; heo:C694_04770; -. DR KEGG; hpy:HP0927; -. DR PATRIC; 20593155; VBIHelPyl33062_0963. DR eggNOG; ENOG4105D0M; Bacteria. DR eggNOG; COG0501; LUCA. DR KO; K03799; -. DR OMA; PYMNAFA; -. DR OrthoDB; EOG6F55J5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00188; Pept_M48_protease_HtpX; 1. DR InterPro; IPR022919; Pept_M48_protease_HtpX. DR InterPro; IPR001915; Peptidase_M48. DR Pfam; PF01435; Peptidase_M48; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Hydrolase; KW Membrane; Metal-binding; Metalloprotease; Protease; KW Reference proteome; Transmembrane; Transmembrane helix; Zinc. FT CHAIN 1 310 Protease HtpX homolog. FT /FTId=PRO_0000138866. FT TRANSMEM 16 36 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT TRANSMEM 55 75 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT TRANSMEM 182 202 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT TRANSMEM 214 234 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT ACT_SITE 167 167 {ECO:0000255|HAMAP-Rule:MF_00188}. FT METAL 166 166 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT METAL 170 170 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00188}. FT METAL 239 239 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00188}. SQ SEQUENCE 310 AA; 35432 MW; 71F909AFC748F3EF CRC64; MTNFEKIIAQ NRIKTNAVLA TYCVIFAFIG LLVDVIRINA NDLGIALFKL MTFQIFPTIT MIMFLVAFVV IVVCIQNFSS IMLSGDGYKL IDTSKVLSSK ENQIHRLLLE LLEEANLHFE PKLYIINAPY MNAFASGWNE SNSLIALTSA LIERLDRDEL KAVIAHELSH IRHNDIRLTM CVGILSNIML LVANFSVYFF MGNRKNSGAN LARMILWVLQ IILPFLTLLL QMYLSRTREY MADSGAAFLM HDNKPMIRAL QKISNDYTNN DYKEIDKNST RSAAYLFNAE MFSTHPSIKN RIQSLRKRVI // ID ILVC_HELPY Reviewed; 330 AA. AC O25097; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=Ketol-acid reductoisomerase; DE EC=1.1.1.86; DE AltName: Full=Acetohydroxy-acid isomeroreductase; DE AltName: Full=Alpha-keto-beta-hydroxylacyl reductoisomerase; GN Name=ilvC; OrderedLocusNames=HP_0330; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: (2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) CC = (2S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH. CC -!- CATALYTIC ACTIVITY: (2R,3R)-2,3-dihydroxy-3-methylpentanoate + CC NADP(+) = (S)-2-hydroxy-2-ethyl-3-oxobutanoate + NADPH. CC -!- PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L- CC isoleucine from 2-oxobutanoate: step 2/4. CC -!- PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine CC from pyruvate: step 2/4. CC -!- SIMILARITY: Belongs to the ketol-acid reductoisomerase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07399.1; -; Genomic_DNA. DR PIR; B64561; B64561. DR RefSeq; NP_207128.1; NC_000915.1. DR RefSeq; WP_001207734.1; NC_018939.1. DR ProteinModelPortal; O25097; -. DR STRING; 85962.HP0330; -. DR PaxDb; O25097; -. DR PRIDE; O25097; -. DR EnsemblBacteria; AAD07399; AAD07399; HP_0330. DR GeneID; 899086; -. DR KEGG; heo:C694_01670; -. DR KEGG; hpy:HP0330; -. DR PATRIC; 20591895; VBIHelPyl33062_0344. DR eggNOG; ENOG4105C6M; Bacteria. DR eggNOG; COG0059; LUCA. DR KO; K00053; -. DR OMA; LDWWKKF; -. DR OrthoDB; EOG625K07; -. DR BioCyc; HPY:HP0330-MONOMER; -. DR UniPathway; UPA00047; UER00056. DR UniPathway; UPA00049; UER00060. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004455; F:ketol-acid reductoisomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009099; P:valine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1040.10; -; 1. DR HAMAP; MF_00435; IlvC; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR013328; 6PGD_dom_2. DR InterPro; IPR000506; AcH_isomrdctse_C. DR InterPro; IPR013116; IlvN. DR InterPro; IPR013023; Ketol-acid_reductoisomrdctse. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR21371; PTHR21371; 1. DR Pfam; PF01450; IlvC; 1. DR Pfam; PF07991; IlvN; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00465; ilvC; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Branched-chain amino acid biosynthesis; KW Complete proteome; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 330 Ketol-acid reductoisomerase. FT /FTId=PRO_0000151316. FT ACT_SITE 109 109 {ECO:0000255}. SQ SEQUENCE 330 AA; 36534 MW; 97DAE57B06C3FC38 CRC64; MALPVYYDKD IDLGVIQSLQ VGIIGYGAQG EAQALNLRDS KVKARIGLYQ GSLSVSKAKK EGFEVLEVKE LVQNSDVIMA LLPDELHKEV LEKEVIPFLK EGQIVGFAHG FSVHFNQVVL PKGVGAILVA PKGPGSALRE EYLKNRGLYH LIAIEQESSI HNAKAVALSY AKAMGGGRMG VLETSFKEEC ESDLFGEQAV LCGGLEAIVR MGFETLIKAG YPEELAYFEC VHEVKLVADL LHYKGVEGLR KHISNTAEFG AIKAREPMGK LLKKRMQKIL KKIQNGSFAK DFLLEKSLNY PRLNTERKAL KETKIEQIGE ILRAPFNHKK // ID HYPB_HELPY Reviewed; 242 AA. AC O25560; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Hydrogenase/urease nickel incorporation protein HypB; GN Name=hypB; OrderedLocusNames=HP_0900; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CHARACTERIZATION. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=11123699; DOI=10.1046/j.1365-2958.2001.02244.x; RA Olson J.W., Mehta N.S., Maier R.J.; RT "Requirement of nickel metabolism proteins HypA and HypB for full RT activity of both hydrogenase and urease in Helicobacter pylori."; RL Mol. Microbiol. 39:176-182(2001). RN [3] RP MUTAGENESIS OF LYS-59. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=14521881; DOI=10.1016/S0882-4010(03)00151-7; RA Mehta N., Benoit S., Maier R.J.; RT "Roles of conserved nucleotide-binding domains in accessory proteins, RT HypB and UreG, in the maturation of nickel-enzymes required for RT efficient Helicobacter pylori colonization."; RL Microb. Pathog. 35:229-234(2003). CC -!- FUNCTION: Plays a role in both the hydrogenase and the urease CC nickel cofactor insertion step. CC -!- SIMILARITY: Belongs to the SIMIBI class G3E GTPase family. CC HypB/HupM subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07946.1; -; Genomic_DNA. DR PIR; D64632; D64632. DR RefSeq; NP_207693.1; NC_000915.1. DR RefSeq; WP_000003622.1; NC_018939.1. DR PDB; 4LPS; X-ray; 2.00 A; A/B=1-242. DR PDBsum; 4LPS; -. DR ProteinModelPortal; O25560; -. DR DIP; DIP-3235N; -. DR IntAct; O25560; 2. DR MINT; MINT-163389; -. DR STRING; 85962.HP0900; -. DR PaxDb; O25560; -. DR PRIDE; O25560; -. DR EnsemblBacteria; AAD07946; AAD07946; HP_0900. DR GeneID; 899430; -. DR KEGG; heo:C694_04620; -. DR KEGG; hpy:HP0900; -. DR PATRIC; 20593093; VBIHelPyl33062_0932. DR eggNOG; ENOG4105E8T; Bacteria. DR eggNOG; COG0378; LUCA. DR KO; K04652; -. DR OMA; CPSEFDL; -. DR OrthoDB; EOG628F9T; -. DR BioCyc; HPY:HP0900-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016151; F:nickel cation binding; IEA:InterPro. DR GO; GO:0006461; P:protein complex assembly; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003495; CobW/HypB/UreG_dom. DR InterPro; IPR004392; Hyd_acc_HypB. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF02492; cobW; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00073; hypB; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Metal-binding; Nickel; KW Nickel insertion; Reference proteome. FT CHAIN 1 242 Hydrogenase/urease nickel incorporation FT protein HypB. FT /FTId=PRO_0000201442. FT MUTAGEN 59 59 K->A: No hydrogenase activity, 1% urease FT activity. Normal amounts of apourease and FT HypB protein are produced Hydrogenase FT activity is partially restored and urease FT activity is fully restored by growth on 5 FT uM Ni(2+). {ECO:0000269|PubMed:14521881}. FT HELIX 29 43 {ECO:0000244|PDB:4LPS}. FT STRAND 47 52 {ECO:0000244|PDB:4LPS}. FT HELIX 59 66 {ECO:0000244|PDB:4LPS}. FT STRAND 74 82 {ECO:0000244|PDB:4LPS}. FT HELIX 85 91 {ECO:0000244|PDB:4LPS}. FT TURN 92 94 {ECO:0000244|PDB:4LPS}. FT STRAND 97 101 {ECO:0000244|PDB:4LPS}. FT HELIX 110 122 {ECO:0000244|PDB:4LPS}. FT TURN 123 128 {ECO:0000244|PDB:4LPS}. FT STRAND 130 135 {ECO:0000244|PDB:4LPS}. FT HELIX 142 145 {ECO:0000244|PDB:4LPS}. FT STRAND 151 158 {ECO:0000244|PDB:4LPS}. FT HELIX 159 161 {ECO:0000244|PDB:4LPS}. FT HELIX 165 168 {ECO:0000244|PDB:4LPS}. FT HELIX 170 174 {ECO:0000244|PDB:4LPS}. FT STRAND 177 182 {ECO:0000244|PDB:4LPS}. FT HELIX 184 186 {ECO:0000244|PDB:4LPS}. FT TURN 187 191 {ECO:0000244|PDB:4LPS}. FT HELIX 194 204 {ECO:0000244|PDB:4LPS}. FT STRAND 210 212 {ECO:0000244|PDB:4LPS}. FT HELIX 218 234 {ECO:0000244|PDB:4LPS}. SQ SEQUENCE 242 AA; 27310 MW; 7C505390FB5C0142 CRC64; MSEQRQESLQ NNPNLSKKDV KIVEKILSKN DIKAAEMKER YLKEGLYVLN FMSSPGSGKT TMLENLADFK DFKFCVVEGD LQTNRDADRL RKKGVSAHQI TTGEACHLEA SMIEGAFDLL KDEGALEKSD FLIIENVGNL VCPSSYNLGA AMNIVLLSVP EGDDKVLKYP TMFMCADAVI ISKADMVEVF NFRVSQVKED MQKLKPEAPI FLMSSKDPKS LEDFKNFLLE KKRENYQSTH SF // ID ILVE_HELPY Reviewed; 340 AA. AC O26004; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Branched-chain-amino-acid aminotransferase; DE Short=BCAT; DE EC=2.6.1.42; GN Name=ilvE; OrderedLocusNames=HP_1468; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Acts on leucine, isoleucine and valine. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: L-leucine + 2-oxoglutarate = 4-methyl-2- CC oxopentanoate + L-glutamate. CC -!- CATALYTIC ACTIVITY: L-isoleucine + 2-oxoglutarate = (S)-3-methyl- CC 2-oxopentanoate + L-glutamate. CC -!- CATALYTIC ACTIVITY: L-valine + 2-oxoglutarate = 3-methyl-2- CC oxobutanoate + L-glutamate. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC -!- PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L- CC isoleucine from 2-oxobutanoate: step 4/4. CC -!- PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L- CC leucine from 3-methyl-2-oxobutanoate: step 4/4. CC -!- PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine CC from pyruvate: step 4/4. CC -!- SIMILARITY: Belongs to the class-IV pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08509.1; -; Genomic_DNA. DR PIR; D64703; D64703. DR RefSeq; NP_208259.1; NC_000915.1. DR RefSeq; WP_001284861.1; NC_018939.1. DR ProteinModelPortal; O26004; -. DR STRING; 85962.HP1468; -. DR PaxDb; O26004; -. DR PRIDE; O26004; -. DR EnsemblBacteria; AAD08509; AAD08509; HP_1468. DR GeneID; 899825; -. DR KEGG; heo:C694_07600; -. DR KEGG; hpy:HP1468; -. DR PATRIC; 20594347; VBIHelPyl33062_1542. DR eggNOG; ENOG4105CM2; Bacteria. DR eggNOG; COG0115; LUCA. DR KO; K00826; -. DR OMA; NFFGITH; -. DR OrthoDB; EOG67MF3R; -. DR BioCyc; HPY:HP1468-MONOMER; -. DR UniPathway; UPA00047; UER00058. DR UniPathway; UPA00048; UER00073. DR UniPathway; UPA00049; UER00062. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0052656; F:L-isoleucine transaminase activity; IEA:UniProtKB-EC. DR GO; GO:0052654; F:L-leucine transaminase activity; IEA:UniProtKB-EC. DR GO; GO:0052655; F:L-valine transaminase activity; IEA:UniProtKB-EC. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009099; P:valine biosynthetic process; IEA:UniProtKB-UniPathway. DR InterPro; IPR001544; Aminotrans_IV. DR InterPro; IPR018300; Aminotrans_IV_CS. DR InterPro; IPR005786; B_amino_transII. DR PANTHER; PTHR11825; PTHR11825; 1. DR Pfam; PF01063; Aminotran_4; 1. DR PIRSF; PIRSF006468; BCAT1; 1. DR SUPFAM; SSF56752; SSF56752; 1. DR TIGRFAMs; TIGR01123; ilvE_II; 1. DR PROSITE; PS00770; AA_TRANSFER_CLASS_4; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aminotransferase; KW Branched-chain amino acid biosynthesis; Complete proteome; KW Pyridoxal phosphate; Reference proteome; Transferase. FT CHAIN 1 340 Branched-chain-amino-acid FT aminotransferase. FT /FTId=PRO_0000103268. FT MOD_RES 187 187 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 340 AA; 37641 MW; 84F1685F61DC5C2C CRC64; MANLENLDWK NLGFSYIKTD FRFIATYKNG SWSQGGLVSE NMLQLSEGSP VLHYGQACFE GLKAYRSQKG KALLFRPLEN AKRLQTSCER LLMPKVSEEL FLRACAEVVK ANQKWLAPYK SGASLYLRPF VIGVGDNLGV KPANEYLFIV FCAPVGAYFK GGIEKGGARF ITTIFDRAAP KGTGGVKVGG NYAASLLAHK MATEQGYDDC IYLDPTTHTK IEEVGAANFF GITHDDAFIT PHSPSILPSI TKKSLMVLAK EYLNLKVEER EILMDELDAF KEAGACGTAA IITPIKEIVH NNKSYFFEAP GHITKRLYDL LLSIQQGEQE APKDWIFEVG // ID IMDH_HELPY Reviewed; 481 AA. AC P56088; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 117. DE RecName: Full=Inosine-5'-monophosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMP dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMPD {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMPDH {ECO:0000255|HAMAP-Rule:MF_01964}; DE EC=1.1.1.205 {ECO:0000255|HAMAP-Rule:MF_01964}; GN Name=guaB {ECO:0000255|HAMAP-Rule:MF_01964}; GN OrderedLocusNames=HP_0829; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of inosine 5'-phosphate (IMP) CC to xanthosine 5'-phosphate (XMP), the first committed and rate- CC limiting step in the de novo synthesis of guanine nucleotides, and CC therefore plays an important role in the regulation of cell CC growth. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- CATALYTIC ACTIVITY: Inosine 5'-phosphate + NAD(+) + H(2)O = CC xanthosine 5'-phosphate + NADH. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01964}; CC -!- ENZYME REGULATION: Mycophenolic acid (MPA) is a non-competitive CC inhibitor that prevents formation of the closed enzyme CC conformation by binding to the same site as the amobile flap. In CC contrast, mizoribine monophosphate (MZP) is a competitive CC inhibitor that induces the closed conformation. MPA is a potent CC inhibitor of mammalian IMPDHs but a poor inhibitor of the CC bacterial enzymes. MZP is a more potent inhibitor of bacterial CC IMPDH. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- PATHWAY: Purine metabolism; XMP biosynthesis via de novo pathway; CC XMP from IMP: step 1/1. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- SIMILARITY: Belongs to the IMPDH/GMPR family. {ECO:0000255|HAMAP- CC Rule:MF_01964}. CC -!- SIMILARITY: Contains 2 CBS domains. {ECO:0000255|HAMAP- CC Rule:MF_01964}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07879.1; -; Genomic_DNA. DR PIR; E64623; E64623. DR RefSeq; NP_207622.1; NC_000915.1. DR RefSeq; WP_001221712.1; NC_018939.1. DR ProteinModelPortal; P56088; -. DR SMR; P56088; 2-480. DR STRING; 85962.HP0829; -. DR PaxDb; P56088; -. DR PRIDE; P56088; -. DR EnsemblBacteria; AAD07879; AAD07879; HP_0829. DR GeneID; 900202; -. DR KEGG; heo:C694_04250; -. DR KEGG; hpy:HP0829; -. DR PATRIC; 20592949; VBIHelPyl33062_0863. DR eggNOG; ENOG4105CP4; Bacteria. DR eggNOG; COG0516; LUCA. DR eggNOG; COG0517; LUCA. DR KO; K00088; -. DR OMA; SSMGYCG; -. DR OrthoDB; EOG6GTZPV; -. DR BioCyc; HPY:HP0829-MONOMER; -. DR UniPathway; UPA00601; UER00295. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003938; F:IMP dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006177; P:GMP biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01964; IMPDH; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR005990; IMP_DH. DR InterPro; IPR015875; IMP_DH/GMP_Rdtase_CS. DR InterPro; IPR001093; IMP_DH_GMPRt. DR PANTHER; PTHR11911:SF6; PTHR11911:SF6; 2. DR Pfam; PF00571; CBS; 2. DR Pfam; PF00478; IMPDH; 1. DR PIRSF; PIRSF000130; IMPDH; 1. DR SMART; SM00116; CBS; 2. DR TIGRFAMs; TIGR01302; IMP_dehydrog; 1. DR PROSITE; PS51371; CBS; 2. DR PROSITE; PS00487; IMP_DH_GMP_RED; 1. PE 3: Inferred from homology; KW CBS domain; Complete proteome; GMP biosynthesis; Metal-binding; NAD; KW Oxidoreductase; Potassium; Purine biosynthesis; Reference proteome; KW Repeat. FT CHAIN 1 481 Inosine-5'-monophosphate dehydrogenase. FT /FTId=PRO_0000093698. FT DOMAIN 92 148 CBS 1. {ECO:0000255|HAMAP-Rule:MF_01964}. FT DOMAIN 152 209 CBS 2. {ECO:0000255|HAMAP-Rule:MF_01964}. FT NP_BIND 293 295 NAD. {ECO:0000255|HAMAP-Rule:MF_01964}. FT REGION 333 335 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT REGION 356 357 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT REGION 380 384 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT ACT_SITE 300 300 Thioimidate intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT ACT_SITE 396 396 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT METAL 295 295 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 297 297 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 300 300 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 464 464 Potassium; via carbonyl oxygen; shared FT with tetrameric partner. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 465 465 Potassium; via carbonyl oxygen; shared FT with tetrameric partner. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 466 466 Potassium; via carbonyl oxygen; shared FT with tetrameric partner. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 244 244 NAD. {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 298 298 IMP. {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 410 410 IMP. {ECO:0000255|HAMAP-Rule:MF_01964}. SQ SEQUENCE 481 AA; 51802 MW; 075A84B1F8AC9481 CRC64; MRILQRALTF EDVLMVPRKS SVLPKDVSLK SRLTKNIRLN IPFISAAMDT VTEHKTAIAM ARLGGIGIVH KNMDIQTQVK EITKVKKSES GVINDPIFIH AHRTLADAKV ITDNYKISGV PVVDDKGLLI GILTNRDVRF ETDLSKKVGD VMTKMPLVTA HVGISLDEAS DLMHKHKIEK LPIVDKDNVL KGLITIKDIQ KRIEYPEANK DDFGRLRVGA AIGVGQLDRA EMLVKAGVDA LVLDSAHGHS ANILHTLEEI KKSLVVDVIV GNVVTKEATS DLISAGADAI KVGIGPGSIC TTRIVAGVGM PQVSAIDNCV EVASKFDIPV IADGGIRYSG DVAKALALGA SSVMIGSLLA GTEESPGDFM IYQGRQYKSY RGMGSIGAMT KGSSDRYFQE GVASEKLVPE GIEGRVPYRG KVSDMIFQLV GGVRSSMGYQ GAKNILELYQ NAEFVEITSA GLKESHVHGV DITKEAPNYY G // ID ISCS_HELPY Reviewed; 387 AA. AC O25008; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=Cysteine desulfurase IscS {ECO:0000255|HAMAP-Rule:MF_00331}; DE EC=2.8.1.7 {ECO:0000255|HAMAP-Rule:MF_00331}; GN Name=iscS {ECO:0000255|HAMAP-Rule:MF_00331}; GN OrderedLocusNames=HP_0220; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Master enzyme that delivers sulfur to a number of CC partners involved in Fe-S cluster assembly, tRNA modification or CC cofactor biosynthesis. Catalyzes the removal of elemental sulfur CC atoms from cysteine to produce alanine. Functions as a sulfur CC delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S CC scaffold assembly protein, as well as other S acceptor proteins. CC {ECO:0000255|HAMAP-Rule:MF_00331}. CC -!- CATALYTIC ACTIVITY: L-cysteine + acceptor = L-alanine + S- CC sulfanyl-acceptor. {ECO:0000255|HAMAP-Rule:MF_00331}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00331}; CC -!- PATHWAY: Cofactor biosynthesis; iron-sulfur cluster biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00331}. CC -!- SUBUNIT: Homodimer. Forms a heterotetramer with IscU, interacts CC with other sulfur acceptors. {ECO:0000255|HAMAP-Rule:MF_00331}. CC -!- INTERACTION: CC O25852:HP_1262; NbExp=3; IntAct=EBI-7607228, EBI-7731253; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00331}. CC -!- SIMILARITY: Belongs to the class-V pyridoxal-phosphate-dependent CC aminotransferase family. NifS/IscS subfamily. {ECO:0000255|HAMAP- CC Rule:MF_00331}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07288.1; -; Genomic_DNA. DR PIR; D64547; D64547. DR RefSeq; NP_207018.1; NC_000915.1. DR RefSeq; WP_000941691.1; NC_018939.1. DR ProteinModelPortal; O25008; -. DR DIP; DIP-3630N; -. DR IntAct; O25008; 5. DR MINT; MINT-177413; -. DR STRING; 85962.HP0220; -. DR PaxDb; O25008; -. DR PRIDE; O25008; -. DR EnsemblBacteria; AAD07288; AAD07288; HP_0220. DR GeneID; 900131; -. DR KEGG; heo:C694_01110; -. DR KEGG; hpy:HP0220; -. DR PATRIC; 20591663; VBIHelPyl33062_0231. DR eggNOG; ENOG4105C3J; Bacteria. DR eggNOG; COG1104; LUCA. DR KO; K04487; -. DR OMA; DNMAIRG; -. DR OrthoDB; EOG62RSBK; -. DR BioCyc; HPY:HP0220-MONOMER; -. DR UniPathway; UPA00266; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0031071; F:cysteine desulfurase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0044571; P:[2Fe-2S] cluster assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0006534; P:cysteine metabolic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR HAMAP; MF_00331; Cys_desulf_IscS; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR010240; Cys_deSase_IscS. DR InterPro; IPR017773; Cys_deSase_NifS_proteobacteria. DR InterPro; IPR016454; Cysteine_dSase. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00266; Aminotran_5; 1. DR PIRSF; PIRSF005572; NifS; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR03403; nifS_epsilon; 1. PE 1: Evidence at protein level; KW 2Fe-2S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; KW Metal-binding; Pyridoxal phosphate; Reference proteome; Transferase. FT CHAIN 1 387 Cysteine desulfurase IscS. FT /FTId=PRO_0000150269. FT REGION 73 74 Pyridoxal phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00331}. FT REGION 203 205 Pyridoxal phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00331}. FT ACT_SITE 328 328 Cysteine persulfide intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00331}. FT METAL 328 328 Iron-sulfur (2Fe-2S); via persulfide FT group; shared with IscU. FT {ECO:0000255|HAMAP-Rule:MF_00331}. FT BINDING 155 155 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00331}. FT BINDING 183 183 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00331}. FT BINDING 241 241 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00331}. FT MOD_RES 206 206 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00331}. SQ SEQUENCE 387 AA; 42404 MW; 93AF9C7FB6FC8D94 CRC64; MLQRIYLDNN ATTRIDPKVK EIMDPFLRDH YGNPSSLHQF GTETHPAIAE ALDKLYKGIN ARDIDDVIIT SCATESNNWV LKGVYFDECL KKGKNHIVTT VAEHPAVRST CNFLESLGVE VTYLPINEHG SITAEQVKEA ITEKTALVSV MWANNETGLI FPIEEIGAIC KEKGVLFHTD AVQAIGKIPV DVLKANADFL SFSAHKFHGP KGIGGLYIRS GVGLTPLFHG GEHMNGRRSG TLNVPYIVGM GEAMKLAVEH LDYEKEVVGK LRDKLEEALL KIPDVMVVGD RIHRVPNTTL VSVRGIEGEA MLWDLNRSNI AASTGSACAS EDLEANPVMV AIGASKELAH TAIRLSLSRF NTEAEIDKTI EVFSQAAVRL RNISSSY // ID IF3_HELPY Reviewed; 203 AA. AC P55973; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Translation initiation factor IF-3 {ECO:0000255|HAMAP-Rule:MF_00080}; GN Name=infC {ECO:0000255|HAMAP-Rule:MF_00080}; GN OrderedLocusNames=HP_0124; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: IF-3 binds to the 30S ribosomal subunit and shifts the CC equilibrum between 70S ribosomes and their 50S and 30S subunits in CC favor of the free subunits, thus enhancing the availability of 30S CC subunits on which protein synthesis initiation begins. CC {ECO:0000255|HAMAP-Rule:MF_00080}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00080}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00080}. CC -!- SIMILARITY: Belongs to the IF-3 family. {ECO:0000255|HAMAP- CC Rule:MF_00080}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07193.1; -; Genomic_DNA. DR PIR; D64535; D64535. DR RefSeq; NP_206924.1; NC_000915.1. DR RefSeq; WP_000089203.1; NC_018939.1. DR ProteinModelPortal; P55973; -. DR SMR; P55973; 5-79. DR DIP; DIP-3195N; -. DR IntAct; P55973; 2. DR MINT; MINT-171266; -. DR STRING; 85962.HP0124; -. DR PaxDb; P55973; -. DR PRIDE; P55973; -. DR EnsemblBacteria; AAD07193; AAD07193; HP_0124. DR GeneID; 899823; -. DR KEGG; heo:C694_00615; -. DR KEGG; hpy:HP0124; -. DR PATRIC; 20591465; VBIHelPyl33062_0132. DR eggNOG; ENOG4108UUX; Bacteria. DR eggNOG; COG0290; LUCA. DR KO; K02520; -. DR OMA; DYDVRIG; -. DR OrthoDB; EOG63JRGJ; -. DR BioCyc; HPY:HP0124-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.20.80; -; 1. DR Gene3D; 3.30.110.10; -; 1. DR HAMAP; MF_00080; IF_3; 1. DR InterPro; IPR019813; Translation_initiation_fac3_CS. DR InterPro; IPR001288; Translation_initiation_fac_3. DR InterPro; IPR019815; Translation_initiation_fac_3_C. DR InterPro; IPR019814; Translation_initiation_fac_3_N. DR PANTHER; PTHR10938; PTHR10938; 1. DR Pfam; PF00707; IF3_C; 1. DR Pfam; PF05198; IF3_N; 1. DR SUPFAM; SSF54364; SSF54364; 1. DR SUPFAM; SSF55200; SSF55200; 1. DR TIGRFAMs; TIGR00168; infC; 1. DR PROSITE; PS00938; IF3; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Initiation factor; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 203 Translation initiation factor IF-3. FT /FTId=PRO_0000177525. SQ SEQUENCE 203 AA; 23342 MW; 65B38BFD36CD8003 CRC64; MSRNEVLLNG DINFKEVRCV GDNGEVYGII SSKEALHIAQ NLGLDLVLIS ASAKPPVCKV MDYNKFRYQN EKKIKEAKKK QKQIEIKEIK LSTQIAQNDI NYKVKHAREF IESNKHVKFK VVLKGRESQN SKAGLDVLFR VQTMMQDLAN PEKEPKTEGR FVSWMFVPKA KEAPKNEKKT KENNPPFNRI NLMKGENHAK NED // ID ISPH_HELPY Reviewed; 274 AA. AC P65185; O25160; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-MAY-2016, entry version 72. DE RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000255|HAMAP-Rule:MF_00191}; DE EC=1.17.7.4 {ECO:0000255|HAMAP-Rule:MF_00191}; GN Name=ispH {ECO:0000255|HAMAP-Rule:MF_00191}; Synonyms=lytB; GN OrderedLocusNames=HP_0400; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate CC into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate CC (DMAPP). {ECO:0000255|HAMAP-Rule:MF_00191}. CC -!- CATALYTIC ACTIVITY: Isopentenyl diphosphate + 2 oxidized CC ferredoxin [iron-sulfur] cluster + H(2)O = (E)-4-hydroxy-3- CC methylbut-2-en-1-yl diphosphate + 2 reduced ferredoxin [iron- CC sulfur] cluster + 2 H(+). {ECO:0000255|HAMAP-Rule:MF_00191}. CC -!- CATALYTIC ACTIVITY: Dimethylallyl diphosphate + 2 oxidized CC ferredoxin [iron-sulfur] cluster + H(2)O = (E)-4-hydroxy-3- CC methylbut-2-en-1-yl diphosphate + 2 reduced ferredoxin [iron- CC sulfur] cluster + 2 H(+). {ECO:0000255|HAMAP-Rule:MF_00191}. CC -!- COFACTOR: CC Name=[3Fe-4S] cluster; Xref=ChEBI:CHEBI:21137; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00191}; CC Note=Binds 1 [3Fe-4S] cluster per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00191}; CC -!- PATHWAY: Isoprenoid biosynthesis; dimethylallyl diphosphate CC biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3- CC methylbutenyl diphosphate: step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_00191}. CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 6/6. {ECO:0000255|HAMAP- CC Rule:MF_00191}. CC -!- SIMILARITY: Belongs to the IspH family. {ECO:0000255|HAMAP- CC Rule:MF_00191}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07469.1; -; Genomic_DNA. DR PIR; H64569; H64569. DR RefSeq; NP_207198.1; NC_000915.1. DR RefSeq; WP_000403575.1; NC_018939.1. DR ProteinModelPortal; P65185; -. DR IntAct; P65185; 2. DR MINT; MINT-4070280; -. DR STRING; 85962.HP0400; -. DR PaxDb; P65185; -. DR PRIDE; P65185; -. DR EnsemblBacteria; AAD07469; AAD07469; HP_0400. DR GeneID; 898887; -. DR KEGG; heo:C694_02030; -. DR KEGG; hpy:HP0400; -. DR PATRIC; 20592039; VBIHelPyl33062_0413. DR eggNOG; ENOG4105C48; Bacteria. DR eggNOG; COG0761; LUCA. DR KO; K03527; -. DR OMA; HTIDATC; -. DR OrthoDB; EOG6HF624; -. DR BioCyc; HPY:HP0400-MONOMER; -. DR UniPathway; UPA00056; UER00097. DR UniPathway; UPA00059; UER00105. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051538; F:3 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0051745; F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0050992; P:dimethylallyl diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-HAMAP. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00191; IspH; 1. DR InterPro; IPR003451; LytB/IspH. DR Pfam; PF02401; LYTB; 1. DR TIGRFAMs; TIGR00216; ispH_lytB; 1. PE 3: Inferred from homology; KW 3Fe-4S; Complete proteome; Iron; Iron-sulfur; Isoprene biosynthesis; KW Metal-binding; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 274 4-hydroxy-3-methylbut-2-enyl diphosphate FT reductase. FT /FTId=PRO_0000128826. FT REGION 214 216 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT METAL 12 12 Iron-sulfur (3Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT METAL 92 92 Iron-sulfur (3Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT METAL 186 186 Iron-sulfur (3Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT BINDING 36 36 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT BINDING 70 70 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT BINDING 120 120 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT BINDING 158 158 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00191}. FT BINDING 258 258 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00191}. SQ SEQUENCE 274 AA; 30917 MW; FB08918117BA01BD CRC64; MEIKMAKDYG FCFGVKRAIQ IAEKNQNSLI FGSLIHNAKE INRLEKNFNV KIEEDPKKIP KNKSVIIRTH GIPKQDLEYL KNKGVKITDA TCPYVIKPQQ IVESMSKEGY QIVLFGDINH PEVKGVISYA TNQALVVNSL EELQEKKLQR KVALVSQTTK QTPKLLQIAS YLVERCTEVR IFNTICNATS YNQKAALDLS KEVDIMIVVG GKTSSNTKQL LSIAKQHCKD SYLVEDENEL ELAWFKDKKL CGITAGASTP DWIIENVKQK ISTI // ID ISPG_HELPY Reviewed; 359 AA. AC O25342; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000255|HAMAP-Rule:MF_00159}; DE EC=1.17.7.3 {ECO:0000255|HAMAP-Rule:MF_00159}; DE AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00159}; GN Name=ispG {ECO:0000255|HAMAP-Rule:MF_00159}; GN OrderedLocusNames=HP_0625; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate CC (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. CC {ECO:0000255|HAMAP-Rule:MF_00159}. CC -!- CATALYTIC ACTIVITY: (E)-4-hydroxy-3-methylbut-2-en-1-yl CC diphosphate + H(2)O + oxidized flavodoxin = 2-C-methyl-D- CC erythritol 2,4-cyclodiphosphate + reduced flavodoxin. CC {ECO:0000255|HAMAP-Rule:MF_00159}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00159}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000255|HAMAP-Rule:MF_00159}; CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 5/6. {ECO:0000255|HAMAP- CC Rule:MF_00159}. CC -!- SIMILARITY: Belongs to the IspG family. {ECO:0000255|HAMAP- CC Rule:MF_00159}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07695.1; -; Genomic_DNA. DR PIR; A64598; A64598. DR RefSeq; NP_207419.1; NC_000915.1. DR RefSeq; WP_000892489.1; NC_018939.1. DR ProteinModelPortal; O25342; -. DR DIP; DIP-3696N; -. DR IntAct; O25342; 1. DR MINT; MINT-179231; -. DR STRING; 85962.HP0625; -. DR PaxDb; O25342; -. DR PRIDE; O25342; -. DR DNASU; 899294; -. DR EnsemblBacteria; AAD07695; AAD07695; HP_0625. DR GeneID; 899294; -. DR KEGG; heo:C694_03235; -. DR KEGG; hpy:HP0625; -. DR PATRIC; 20592533; VBIHelPyl33062_0655. DR eggNOG; ENOG4105C4E; Bacteria. DR eggNOG; COG0821; LUCA. DR KO; K03526; -. DR OMA; HNGMKIA; -. DR OrthoDB; EOG67Q96Z; -. DR BioCyc; HPY:HP0625-MONOMER; -. DR UniPathway; UPA00056; UER00096. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046429; F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00159; IspG; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR029065; Enolase_C-like. DR InterPro; IPR016425; IspG_bac. DR InterPro; IPR004588; IspG_bac-typ. DR Pfam; PF04551; GcpE; 1. DR PIRSF; PIRSF004640; IspG; 1. DR SUPFAM; SSF51604; SSF51604; 1. DR TIGRFAMs; TIGR00612; ispG_gcpE; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Isoprene biosynthesis; KW Metal-binding; Oxidoreductase; Reference proteome. FT CHAIN 1 359 4-hydroxy-3-methylbut-2-en-1-yl FT diphosphate synthase (flavodoxin). FT /FTId=PRO_0000190587. FT METAL 264 264 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00159}. FT METAL 267 267 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00159}. FT METAL 299 299 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00159}. FT METAL 306 306 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_00159}. SQ SEQUENCE 359 AA; 39279 MW; 02D8860C6D6E8F51 CRC64; MLENRVKTKQ IFIGGVAIGG DAPISTQSMT FSKTADIEST KNQIDRLKLA GADLVRVAVS NEKDALALKE LKKVSPLPLI ADIHFHYKFA LIAAQSVDAI RINPGNIGSK EKIKAVVDAC KEKNIPIRIG VNAGSLEKQF DQKYGPTPKG MVESALYNAK LLEDLDFTNF KISLKASDVI RTIEAYRMLR PLVIYPFHLG VTEAGNLFSS SIKSAMALGG LLMEGIGDTM RVSITGELEN EIKVARAILR HSGRLKEGIN WISCPTCGRI EANLVDMAIK VEKRLSHIKT PLDISVMGCV VNALGEAKHA DMAIAFGNRS GLIIKEGKVI HKLAEKDLFE TFVIEVENLA KEREKSLKD // ID ISPT_HELPY Reviewed; 234 AA. AC P55984; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Isoprenyl transferase; DE EC=2.5.1.-; GN Name=uppS; OrderedLocusNames=HP_1221; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 4-233, AND SUBUNIT. RX PubMed=18382620; DOI=10.1155/2008/841312; RA Kuo C.J., Guo R.T., Lu I.L., Liu H.G., Wu S.Y., Ko T.P., Wang A.H., RA Liang P.H.; RT "Structure-based inhibitors exhibit differential activities against RT Helicobacter pylori and Escherichia coli undecaprenyl pyrophosphate RT synthases."; RL J. Biomed. Biotechnol. 2008:841312-841312(2008). RN [3] RP X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS) IN COMPLEX WITH SUBSTRATE, AND RP SUBUNIT. RA Guo R.T., Kuo C.J., Chen C.L., Ko T.P., Liang P.H., Wang A.H.-J.; RT "Biochemical characterization, crystal structure, and inhibitors of RT Helicobacter pylori undecaprenyl pyrophosphate synthase."; RL Submitted (FEB-2009) to the PDB data bank. CC -!- FUNCTION: Catalyzes the condensation of isopentenyl diphosphate CC (IPP) with allylic pyrophosphates generating different type of CC terpenoids. {ECO:0000250}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 2 magnesium ions per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:18382620, CC ECO:0000269|Ref.3}. CC -!- SIMILARITY: Belongs to the UPP synthase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08263.1; -; Genomic_DNA. DR PIR; E64672; E64672. DR RefSeq; NP_208013.1; NC_000915.1. DR RefSeq; WP_000370674.1; NC_000915.1. DR PDB; 2D2R; X-ray; 1.88 A; A/B=2-233. DR PDB; 2DTN; X-ray; 2.50 A; A/B=2-233. DR PDBsum; 2D2R; -. DR PDBsum; 2DTN; -. DR ProteinModelPortal; P55984; -. DR SMR; P55984; 3-227. DR IntAct; P55984; 2. DR STRING; 85962.HP1221; -. DR PaxDb; P55984; -. DR PRIDE; P55984; -. DR EnsemblBacteria; AAD08263; AAD08263; HP_1221. DR GeneID; 900332; -. DR KEGG; heo:C694_06305; -. DR KEGG; hpy:HP1221; -. DR PATRIC; 20593813; VBIHelPyl33062_1277. DR eggNOG; ENOG4105CR3; Bacteria. DR eggNOG; COG0020; LUCA. DR KO; K00806; -. DR OMA; WAKLKNK; -. DR OrthoDB; EOG68H89T; -. DR BioCyc; HPY:HP1221-MONOMER; -. DR BRENDA; 2.5.1.31; 2604. DR EvolutionaryTrace; P55984; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004659; F:prenyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1180.10; -; 1. DR HAMAP; MF_01139; ISPT; 1. DR InterPro; IPR001441; UPP_synth-like. DR InterPro; IPR018520; UPP_synth-like_CS. DR PANTHER; PTHR10291; PTHR10291; 1. DR Pfam; PF01255; Prenyltransf; 1. DR SUPFAM; SSF64005; SSF64005; 1. DR TIGRFAMs; TIGR00055; uppS; 1. DR PROSITE; PS01066; UPP_SYNTHASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Magnesium; Metal-binding; KW Reference proteome; Transferase. FT CHAIN 1 234 Isoprenyl transferase. FT /FTId=PRO_0000123623. FT REGION 14 17 Substrate binding. {ECO:0000250}. FT REGION 58 60 Substrate binding. {ECO:0000250}. FT REGION 186 188 Substrate binding. {ECO:0000250}. FT ACT_SITE 13 13 {ECO:0000250}. FT ACT_SITE 61 61 Proton acceptor. {ECO:0000250}. FT METAL 13 13 Magnesium. {ECO:0000250}. FT METAL 199 199 Magnesium. {ECO:0000250}. FT BINDING 18 18 Substrate. {ECO:0000250}. FT BINDING 26 26 Substrate. {ECO:0000269|Ref.3}. FT BINDING 30 30 Substrate. {ECO:0000250}. FT BINDING 62 62 Substrate. {ECO:0000250}. FT BINDING 64 64 Substrate. {ECO:0000250}. FT BINDING 180 180 Substrate. {ECO:0000250}. FT STRAND 7 11 {ECO:0000244|PDB:2D2R}. FT HELIX 15 20 {ECO:0000244|PDB:2D2R}. FT TURN 21 23 {ECO:0000244|PDB:2D2R}. FT HELIX 26 45 {ECO:0000244|PDB:2D2R}. FT TURN 46 48 {ECO:0000244|PDB:2D2R}. FT STRAND 50 57 {ECO:0000244|PDB:2D2R}. FT HELIX 69 89 {ECO:0000244|PDB:2D2R}. FT STRAND 93 98 {ECO:0000244|PDB:2D2R}. FT HELIX 100 102 {ECO:0000244|PDB:2D2R}. FT HELIX 105 118 {ECO:0000244|PDB:2D2R}. FT STRAND 125 131 {ECO:0000244|PDB:2D2R}. FT HELIX 134 147 {ECO:0000244|PDB:2D2R}. FT HELIX 153 155 {ECO:0000244|PDB:2D2R}. FT HELIX 160 164 {ECO:0000244|PDB:2D2R}. FT TURN 168 171 {ECO:0000244|PDB:2D2R}. FT STRAND 176 180 {ECO:0000244|PDB:2D2R}. FT STRAND 189 191 {ECO:0000244|PDB:2DTN}. FT TURN 192 197 {ECO:0000244|PDB:2D2R}. FT STRAND 199 202 {ECO:0000244|PDB:2D2R}. FT HELIX 207 209 {ECO:0000244|PDB:2D2R}. FT HELIX 212 225 {ECO:0000244|PDB:2D2R}. SQ SEQUENCE 234 AA; 27455 MW; F3C84720F9E4EB96 CRC64; MDNTLKHLAI IMDGNGRWAK LKNKARAYGH KKGVKTLKDI TIWCANHKLE CLTLYAFSTE NWKRPKSEVD FLMKMLKKYL KDERSTYLNN NIRFRAIGDL EGFSKELRDT ILQLENDTRH FKDFTQVLAL NYGSKNELSR AFKSLLESPP SHINLLESLE NEISNRLDTH DLPEVDLLLR TGGEMRLSNF LLWQSSYAEL FFTPILWPDF TPKDLENIIS DFYKRVRKFG ELKC // ID IPYR_HELPY Reviewed; 173 AA. AC P56153; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=Inorganic pyrophosphatase; DE EC=3.6.1.1; DE AltName: Full=Pyrophosphate phospho-hydrolase; DE Short=PPase; GN Name=ppa; OrderedLocusNames=HP_0620; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=PP34A2; RA Dailide G., Ogura M., Dailidiene D., Berg D.E.; RT "Geographic partioning in Helicobacter pylori: gene pools of Spain and RT Peru are closely related, and distinct from those of Japan."; RL Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Diphosphate + H(2)O = 2 phosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 4 Mg(2+) ions per subunit. Other metal ions can support CC activity, but at a lower rate. Two Mg(2+) ions are required for CC the activation of the enzyme and are present before substrate CC binds, two additional Mg(2+) ions form complexes with substrate CC and product. {ECO:0000250}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the PPase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY153259; AAN74434.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07684.1; -; Genomic_DNA. DR PIR; D64597; D64597. DR RefSeq; NP_207414.1; NC_000915.1. DR RefSeq; WP_001047373.1; NC_018939.1. DR PDB; 1YGZ; X-ray; 2.60 A; A/B/C/D/E/F=1-173. DR PDB; 2BQX; X-ray; 1.90 A; A=1-173. DR PDB; 2BQY; X-ray; 2.30 A; A=1-173. DR PDBsum; 1YGZ; -. DR PDBsum; 2BQX; -. DR PDBsum; 2BQY; -. DR ProteinModelPortal; P56153; -. DR SMR; P56153; 1-172. DR DIP; DIP-3464N; -. DR IntAct; P56153; 2. DR MINT; MINT-163881; -. DR STRING; 85962.HP0620; -. DR PaxDb; P56153; -. DR PRIDE; P56153; -. DR EnsemblBacteria; AAD07684; AAD07684; HP_0620. DR GeneID; 898984; -. DR KEGG; heo:C694_03210; -. DR KEGG; hpy:HP0620; -. DR PATRIC; 20592521; VBIHelPyl33062_0649. DR eggNOG; ENOG4105F0N; Bacteria. DR eggNOG; COG0221; LUCA. DR KO; K01507; -. DR OMA; PVALMKM; -. DR OrthoDB; EOG6NKR4X; -. DR BioCyc; HPY:HP0620-MONOMER; -. DR BRENDA; 3.6.1.1; 2604. DR EvolutionaryTrace; P56153; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004427; F:inorganic diphosphatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006796; P:phosphate-containing compound metabolic process; IEA:InterPro. DR Gene3D; 3.90.80.10; -; 1. DR HAMAP; MF_00209; Inorganic_PPase; 1. DR InterPro; IPR008162; Pyrophosphatase. DR PANTHER; PTHR10286; PTHR10286; 1. DR Pfam; PF00719; Pyrophosphatase; 1. DR SUPFAM; SSF50324; SSF50324; 1. DR PROSITE; PS00387; PPASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Hydrolase; Magnesium; KW Metal-binding; Reference proteome. FT CHAIN 1 173 Inorganic pyrophosphatase. FT /FTId=PRO_0000137501. FT METAL 64 64 Magnesium 1. {ECO:0000250}. FT METAL 69 69 Magnesium 1. {ECO:0000250}. FT METAL 69 69 Magnesium 2. {ECO:0000250}. FT METAL 101 101 Magnesium 1. {ECO:0000250}. FT HELIX 3 5 {ECO:0000244|PDB:1YGZ}. FT STRAND 14 21 {ECO:0000244|PDB:2BQX}. FT STRAND 26 31 {ECO:0000244|PDB:2BQX}. FT TURN 33 35 {ECO:0000244|PDB:2BQX}. FT STRAND 38 43 {ECO:0000244|PDB:2BQX}. FT STRAND 45 47 {ECO:0000244|PDB:2BQX}. FT STRAND 51 56 {ECO:0000244|PDB:2BQX}. FT STRAND 69 72 {ECO:0000244|PDB:2BQX}. FT STRAND 83 96 {ECO:0000244|PDB:2BQX}. FT STRAND 99 108 {ECO:0000244|PDB:2BQX}. FT TURN 110 112 {ECO:0000244|PDB:2BQX}. FT TURN 115 118 {ECO:0000244|PDB:2BQX}. FT HELIX 122 124 {ECO:0000244|PDB:2BQX}. FT HELIX 127 139 {ECO:0000244|PDB:2BQX}. FT TURN 140 143 {ECO:0000244|PDB:2BQX}. FT STRAND 144 146 {ECO:0000244|PDB:1YGZ}. FT STRAND 149 156 {ECO:0000244|PDB:2BQX}. FT HELIX 157 171 {ECO:0000244|PDB:2BQX}. SQ SEQUENCE 173 AA; 19272 MW; 23A51C685A6EC7F2 CRC64; MNLEKLEVSH DADSLCVVIE ISKHSNIKYE LDKESGALMV DRVLYGAQNY PANYGFVPNT LGSDGDPVDA LVLSDVAFQA GSVVKARLVG VLNMEDESGM DEKLIALPID KIDPTHSYVK DIDDLSKHTL DKIKHFFETY KDLEPNKWVK VKGFENKESA IKVLEKAIKA YQG // ID ISPDF_HELPY Reviewed; 406 AA. AC O25664; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=Bifunctional enzyme IspD/IspF {ECO:0000255|HAMAP-Rule:MF_01520}; DE Includes: DE RecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; DE EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_01520}; DE AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_01520}; DE AltName: Full=MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; DE Short=MCT {ECO:0000255|HAMAP-Rule:MF_01520}; DE Includes: DE RecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_01520}; DE Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_01520}; DE Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_01520}; DE Short=MECPS {ECO:0000255|HAMAP-Rule:MF_01520}; DE EC=4.6.1.12 {ECO:0000255|HAMAP-Rule:MF_01520}; GN Name=ispDF {ECO:0000255|HAMAP-Rule:MF_01520}; GN OrderedLocusNames=HP_1020; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Bifunctional enzyme that catalyzes the formation of 4- CC diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- CC D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the CC conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- CC phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- CC cyclodiphosphate (ME-CPP) with a corresponding release of cytidine CC 5-monophosphate (CMP) (IspF). {ECO:0000255|HAMAP-Rule:MF_01520}. CC -!- CATALYTIC ACTIVITY: CTP + 2-C-methyl-D-erythritol 4-phosphate = CC diphosphate + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. CC {ECO:0000255|HAMAP-Rule:MF_01520}. CC -!- CATALYTIC ACTIVITY: 2-phospho-4-(cytidine 5'-diphospho)-2-C- CC methyl-D-erythritol = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate CC + CMP. {ECO:0000255|HAMAP-Rule:MF_01520}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01520}; CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 2/6. {ECO:0000255|HAMAP- CC Rule:MF_01520}. CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 4/6. {ECO:0000255|HAMAP- CC Rule:MF_01520}. CC -!- SIMILARITY: In the N-terminal section; belongs to the IspD family. CC {ECO:0000255|HAMAP-Rule:MF_01520}. CC -!- SIMILARITY: In the C-terminal section; belongs to the IspF family. CC {ECO:0000255|HAMAP-Rule:MF_01520}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08064.1; -; Genomic_DNA. DR PIR; D64647; D64647. DR RefSeq; NP_207810.1; NC_000915.1. DR RefSeq; WP_000052931.1; NC_018939.1. DR ProteinModelPortal; O25664; -. DR IntAct; O25664; 10. DR STRING; 85962.HP1020; -. DR PaxDb; O25664; -. DR PRIDE; O25664; -. DR EnsemblBacteria; AAD08064; AAD08064; HP_1020. DR GeneID; 899555; -. DR KEGG; heo:C694_05275; -. DR KEGG; hpy:HP1020; -. DR PATRIC; 20593375; VBIHelPyl33062_1068. DR eggNOG; ENOG4108UH8; Bacteria. DR eggNOG; COG0245; LUCA. DR eggNOG; COG1211; LUCA. DR KO; K12506; -. DR OMA; GGDIGEW; -. DR OrthoDB; EOG6J48RZ; -. DR BioCyc; HPY:HP1020-MONOMER; -. DR UniPathway; UPA00056; UER00093. DR UniPathway; UPA00056; UER00095. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008685; F:2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050518; F:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.50; -; 1. DR Gene3D; 3.90.550.10; -; 1. DR HAMAP; MF_00107; IspF; 1. DR HAMAP; MF_01520; IspDF; 1. DR InterPro; IPR001228; IspD. DR InterPro; IPR026596; IspD/F. DR InterPro; IPR018294; ISPD_synthase_CS. DR InterPro; IPR003526; MECDP_synthase. DR InterPro; IPR020555; MECDP_synthase_CS. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01128; IspD; 1. DR Pfam; PF02542; YgbB; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR SUPFAM; SSF69765; SSF69765; 1. DR TIGRFAMs; TIGR00453; ispD; 1. DR TIGRFAMs; TIGR00151; ispF; 1. DR PROSITE; PS01295; ISPD; 1. DR PROSITE; PS01350; ISPF; 1. PE 3: Inferred from homology; KW Complete proteome; Isoprene biosynthesis; Lyase; Metal-binding; KW Multifunctional enzyme; Nucleotidyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 406 Bifunctional enzyme IspD/IspF. FT /FTId=PRO_0000075669. FT REGION 1 247 2-C-methyl-D-erythritol 4-phosphate FT cytidylyltransferase. FT REGION 248 406 2-C-methyl-D-erythritol 2,4- FT cyclodiphosphate synthase. FT REGION 254 256 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT REGION 280 281 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT REGION 284 292 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT REGION 302 304 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT REGION 307 311 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT REGION 377 381 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT METAL 254 254 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT METAL 256 256 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT METAL 288 288 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT BINDING 311 311 Substrate; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT BINDING 385 385 Substrate; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT BINDING 388 388 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT SITE 48 48 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT SITE 55 55 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT SITE 175 175 Positions MEP for the nucleophilic FT attack. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT SITE 227 227 Positions MEP for the nucleophilic FT attack. {ECO:0000255|HAMAP- FT Rule:MF_01520}. FT SITE 280 280 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_01520}. FT SITE 379 379 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_01520}. SQ SEQUENCE 406 AA; 45529 MW; 0C1E9FF5EC72C1FB CRC64; MSLIRVNGEA FKLSLESLEE DPFETKETLE TLIKQTSVVL LAAGESRRFS QTIKKQWLRS NHTPLWLSVY ESFKEALDFK EIILVVSELD YIYIKRHYPE IKLVKGGASR QESVRNALKI IDSAYTLTSD VARGLANIEA LKNLFLTLQQ TSHYCIAPYL PCYDTAIYYN EALDREAIKL IQTPQLSHTK ALQSALNQGD FKDESSAILQ AFPDRVSYIE GSKDLHKLTT SGDLKHFTLF FNPAKDTFIG MGFDTHAFIK DKPMVLGGVV LDCEFGLKAH SDGDALLHAV IDAILGAIKG GDIGEWFPDN DPKYKNASSK ELLKIVLDFS QSIGFELFEM GATIFSEIPK ITPYKPAILE NLSQLLGLEK SQISLKATTM EKMGFIGKQE GLLVQAHVSM RYKQKL // ID ISPE_HELPY Reviewed; 268 AA. AC O25984; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; DE Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061}; DE EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061}; DE AltName: Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; GN Name=ispE {ECO:0000255|HAMAP-Rule:MF_00061}; GN OrderedLocusNames=HP_1443; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of the position 2 hydroxy CC group of 4-diphosphocytidyl-2C-methyl-D-erythritol. CC {ECO:0000255|HAMAP-Rule:MF_00061}. CC -!- CATALYTIC ACTIVITY: ATP + 4-(cytidine 5'-diphospho)-2-C-methyl-D- CC erythritol = ADP + 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl- CC D-erythritol. {ECO:0000255|HAMAP-Rule:MF_00061}. CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via DXP pathway; isopentenyl diphosphate from 1- CC deoxy-D-xylulose 5-phosphate: step 3/6. {ECO:0000255|HAMAP- CC Rule:MF_00061}. CC -!- SIMILARITY: Belongs to the GHMP kinase family. IspE subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00061}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08481.1; -; Genomic_DNA. DR PIR; C64700; C64700. DR RefSeq; NP_208234.1; NC_000915.1. DR RefSeq; WP_000150052.1; NC_018939.1. DR ProteinModelPortal; O25984; -. DR STRING; 85962.HP1443; -. DR PaxDb; O25984; -. DR PRIDE; O25984; -. DR EnsemblBacteria; AAD08481; AAD08481; HP_1443. DR GeneID; 899851; -. DR KEGG; heo:C694_07475; -. DR KEGG; hpy:HP1443; -. DR PATRIC; 20594293; VBIHelPyl33062_1515. DR eggNOG; ENOG4107Z7S; Bacteria. DR eggNOG; COG1947; LUCA. DR KO; K00919; -. DR OMA; KNIPTQA; -. DR OrthoDB; EOG6DRPFP; -. DR BioCyc; HPY:HP1443-MONOMER; -. DR UniPathway; UPA00056; UER00094. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050515; F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway. DR GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.890; -; 1. DR HAMAP; MF_00061; IspE; 1. DR InterPro; IPR013750; GHMP_kinase_C_dom. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR004424; IspE. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR PANTHER; PTHR20861:SF2; PTHR20861:SF2; 1. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PIRSF; PIRSF010376; IspE; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55060; SSF55060; 1. DR TIGRFAMs; TIGR00154; ispE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Isoprene biosynthesis; Kinase; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 268 4-diphosphocytidyl-2-C-methyl-D- FT erythritol kinase. FT /FTId=PRO_0000189224. FT NP_BIND 101 111 ATP. {ECO:0000255|HAMAP-Rule:MF_00061}. FT ACT_SITE 10 10 {ECO:0000255|HAMAP-Rule:MF_00061}. FT ACT_SITE 143 143 {ECO:0000255|HAMAP-Rule:MF_00061}. SQ SEQUENCE 268 AA; 30292 MW; 26D4DC682D6EAAFA CRC64; MTHVFEVYPK VNIFLKILHK EGAYHKLISR MCLVKDKLKD IISVKSALSF SLKGDFDCPL EENSLFKALQ ILKNFLKSKN FSHSVIKSLD TLAIEVEKNI PTQAGLGGGS TDAGGLLYHL NQIFDWRLSL EELYSMGSLV GADTNFFISQ YKSTNATSYG EVIENFEEEP LENRLEIYAP NHVFCSTKAV YQAYKPETCF SQAKEWLKKP SLECLKTYDR NGLNDLLKPA LLTNQALKDI ESELGKEWFF SGSGSAFFRL KPMQKGGE // ID KAD_HELPY Reviewed; 191 AA. AC P56104; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Adenylate kinase {ECO:0000255|HAMAP-Rule:MF_00235}; DE Short=AK {ECO:0000255|HAMAP-Rule:MF_00235}; DE EC=2.7.4.3 {ECO:0000255|HAMAP-Rule:MF_00235}; DE AltName: Full=ATP-AMP transphosphorylase {ECO:0000255|HAMAP-Rule:MF_00235}; DE AltName: Full=ATP:AMP phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00235}; DE AltName: Full=Adenylate monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_00235}; GN Name=adk {ECO:0000255|HAMAP-Rule:MF_00235}; OrderedLocusNames=HP_0618; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible transfer of the terminal CC phosphate group between ATP and AMP. Plays an important role in CC cellular energy homeostasis and in adenine nucleotide metabolism. CC {ECO:0000255|HAMAP-Rule:MF_00235}. CC -!- CATALYTIC ACTIVITY: ATP + AMP = 2 ADP. {ECO:0000255|HAMAP- CC Rule:MF_00235}. CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; CC AMP from ADP: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00235}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00235}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00235}. CC -!- DOMAIN: Consists of three domains, a large central CORE domain and CC two small peripheral domains, NMPbind and LID, which undergo CC movements during catalysis. The LID domain closes over the site of CC phosphoryl transfer upon ATP binding. Assembling and dissambling CC the active center during each catalytic cycle provides an CC effective means to prevent ATP hydrolysis. {ECO:0000255|HAMAP- CC Rule:MF_00235}. CC -!- SIMILARITY: Belongs to the adenylate kinase family. CC {ECO:0000255|HAMAP-Rule:MF_00235}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07683.1; -; Genomic_DNA. DR PIR; B64597; B64597. DR RefSeq; NP_207413.1; NC_000915.1. DR RefSeq; WP_000811238.1; NC_018939.1. DR ProteinModelPortal; P56104; -. DR DIP; DIP-3547N; -. DR IntAct; P56104; 1. DR MINT; MINT-169091; -. DR STRING; 85962.HP0618; -. DR PaxDb; P56104; -. DR PRIDE; P56104; -. DR EnsemblBacteria; AAD07683; AAD07683; HP_0618. DR GeneID; 899292; -. DR KEGG; heo:C694_03195; -. DR KEGG; hpy:HP0618; -. DR PATRIC; 20592515; VBIHelPyl33062_0646. DR eggNOG; ENOG4105CC8; Bacteria. DR eggNOG; COG0563; LUCA. DR KO; K00939; -. DR OMA; EKFTSQG; -. DR OrthoDB; EOG679TH4; -. DR BioCyc; HPY:HP0618-MONOMER; -. DR UniPathway; UPA00588; UER00649. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004017; F:adenylate kinase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0044209; P:AMP salvage; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00235; Adenylate_kinase_Adk; 1. DR InterPro; IPR000850; Adenylat/UMP-CMP_kin. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR23359; PTHR23359; 1. DR PRINTS; PR00094; ADENYLTKNASE. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00113; ADENYLATE_KINASE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Kinase; KW Nucleotide biosynthesis; Nucleotide-binding; Reference proteome; KW Transferase. FT CHAIN 1 191 Adenylate kinase. FT /FTId=PRO_0000158778. FT NP_BIND 12 17 ATP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT NP_BIND 61 63 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT NP_BIND 88 91 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT REGION 34 63 NMPbind. {ECO:0000255|HAMAP- FT Rule:MF_00235}. FT REGION 130 136 LID. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 35 35 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 40 40 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 95 95 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 131 131 ATP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 133 133 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 145 145 AMP. {ECO:0000255|HAMAP-Rule:MF_00235}. FT BINDING 173 173 ATP; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00235}. SQ SEQUENCE 191 AA; 21243 MW; EFFB5C6492CEF3E9 CRC64; MKQLFLIIGA PGSGKTTDAE LIAKNNSETI AHFSTGDLLR AESAKKTERG LLIEKFTSQG ELVPLEIVVE TILSAIKSSG KGIILIDGYP RSVEQMQALD KELNAQNEVI LKSVIEVEVS ENTAKERVLG RSRGADDNEK VFHNRMRVFL DPLGEIQNFY KNKKVYKAID GERSIEEIVG EMQEYILSFG N // ID KDSA_HELPY Reviewed; 276 AA. AC P56060; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 96. DE RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; DE EC=2.5.1.55; DE AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; DE AltName: Full=KDO-8-phosphate synthase; DE Short=KDO 8-P synthase; DE Short=KDOPS; DE AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase; GN Name=kdsA; OrderedLocusNames=HP_0003; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Phosphoenolpyruvate + D-arabinose 5-phosphate CC + H(2)O = 3-deoxy-D-manno-octulosonate 8-phosphate + phosphate. CC -!- PATHWAY: Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate CC biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5- CC phosphate: step 2/3. CC -!- PATHWAY: Bacterial outer membrane biogenesis; lipopolysaccharide CC biosynthesis. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the KdsA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07076.1; -; Genomic_DNA. DR PIR; C64520; C64520. DR RefSeq; NP_206805.1; NC_000915.1. DR RefSeq; WP_000858181.1; NC_018939.1. DR PDB; 4Z1A; X-ray; 2.00 A; A/B=1-276. DR PDB; 4Z1B; X-ray; 2.40 A; A/B=1-276. DR PDB; 4Z1C; X-ray; 1.93 A; A/B=1-276. DR PDB; 4Z1D; X-ray; 1.65 A; A/B=1-276. DR PDBsum; 4Z1A; -. DR PDBsum; 4Z1B; -. DR PDBsum; 4Z1C; -. DR PDBsum; 4Z1D; -. DR ProteinModelPortal; P56060; -. DR STRING; 85962.HP0003; -. DR PaxDb; P56060; -. DR PRIDE; P56060; -. DR EnsemblBacteria; AAD07076; AAD07076; HP_0003. DR GeneID; 898773; -. DR KEGG; heo:C694_00015; -. DR KEGG; hpy:HP0003; -. DR PATRIC; 20591193; VBIHelPyl33062_0003. DR eggNOG; ENOG4105CXR; Bacteria. DR eggNOG; COG2877; LUCA. DR KO; K01627; -. DR OMA; FRGIPTM; -. DR OrthoDB; EOG680X4R; -. DR BioCyc; HPY:HP0003-MONOMER; -. DR SABIO-RK; P56060; -. DR UniPathway; UPA00030; -. DR UniPathway; UPA00357; UER00474. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008676; F:3-deoxy-8-phosphooctulonate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019294; P:keto-3-deoxy-D-manno-octulosonic acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00056; KDO8P_synth; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR006218; DAHP1/KDSA. DR InterPro; IPR006269; KDO8P_synthase. DR PANTHER; PTHR21057:SF2; PTHR21057:SF2; 1. DR Pfam; PF00793; DAHP_synth_1; 1. DR TIGRFAMs; TIGR01362; KDO8P_synth; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; KW Lipopolysaccharide biosynthesis; Reference proteome; Transferase. FT CHAIN 1 276 2-dehydro-3-deoxyphosphooctonate FT aldolase. FT /FTId=PRO_0000187133. SQ SEQUENCE 276 AA; 30346 MW; D9161C551AE0FDF9 CRC64; MKTSKTKTPK SVLIAGPCVI ESLENLRSIA TKLQPLANNE RLDFYFKASF DKANRTSLES YRGPGLEKGL EMLQTIKEEF GYKILTDVHE SYQASVAAKV ADILQIPAFL CRQTDLIVEV SQTNAIVNIK KGQFMNPKDM QYSVLKALKT RDKSIQSPTY ETALKNGVWL CERGSSFGYG NLVVDMRSLK IMREFAPVIF DATHSVQMPG GANGKSSGDS SFAPILARAA AAVGIDGLFA ETHVDPKNAL SDGANMLKPD ELEQLVTDML KIQNLF // ID KPRS_HELPY Reviewed; 318 AA. AC P56184; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Ribose-phosphate pyrophosphokinase {ECO:0000255|HAMAP-Rule:MF_00583}; DE Short=RPPK {ECO:0000255|HAMAP-Rule:MF_00583}; DE EC=2.7.6.1 {ECO:0000255|HAMAP-Rule:MF_00583}; DE AltName: Full=5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000255|HAMAP-Rule:MF_00583}; DE AltName: Full=Phosphoribosyl diphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00583}; DE AltName: Full=Phosphoribosyl pyrophosphate synthase {ECO:0000255|HAMAP-Rule:MF_00583}; DE Short=P-Rib-PP synthase {ECO:0000255|HAMAP-Rule:MF_00583}; DE Short=PRPP synthase {ECO:0000255|HAMAP-Rule:MF_00583}; DE Short=PRPPase {ECO:0000255|HAMAP-Rule:MF_00583}; GN Name=prs {ECO:0000255|HAMAP-Rule:MF_00583}; Synonyms=prsA; GN OrderedLocusNames=HP_0742; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the biosynthesis of ribose 1,5-bisphosphate. CC Catalyzes the transfer of pyrophosphoryl group from ATP to ribose- CC 5-phosphate to yield phosphoribosyl diphosphate (PRPP) and AMP. CC {ECO:0000255|HAMAP-Rule:MF_00583}. CC -!- CATALYTIC ACTIVITY: ATP + D-ribose 5-phosphate = AMP + 5-phospho- CC alpha-D-ribose 1-diphosphate. {ECO:0000255|HAMAP-Rule:MF_00583}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00583}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00583}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; 5-phospho-alpha-D- CC ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1- CC diphosphate from D-ribose 5-phosphate (route I): step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_00583}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00583}. CC -!- SIMILARITY: Belongs to the ribose-phosphate pyrophosphokinase CC family. {ECO:0000255|HAMAP-Rule:MF_00583}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07793.1; -; Genomic_DNA. DR PIR; F64612; F64612. DR RefSeq; NP_207536.1; NC_000915.1. DR RefSeq; WP_000647423.1; NC_000915.1. DR ProteinModelPortal; P56184; -. DR SMR; P56184; 12-316. DR STRING; 85962.HP0742; -. DR PaxDb; P56184; -. DR PRIDE; P56184; -. DR EnsemblBacteria; AAD07793; AAD07793; HP_0742. DR GeneID; 900230; -. DR KEGG; hpy:HP0742; -. DR PATRIC; 20592771; VBIHelPyl33062_0774. DR eggNOG; ENOG4105C5T; Bacteria. DR eggNOG; COG0462; LUCA. DR KO; K00948; -. DR OMA; DGEIMVE; -. DR OrthoDB; EOG6Z99XQ; -. DR BioCyc; HPY:HP0742-MONOMER; -. DR UniPathway; UPA00087; UER00172. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004749; F:ribose phosphate diphosphokinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006015; P:5-phosphoribose 1-diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009165; P:nucleotide biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009156; P:ribonucleoside monophosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.2020; -; 2. DR HAMAP; MF_00583_B; RibP_PPkinase_B; 1. DR InterPro; IPR000842; PRib_PP_synth_CS. DR InterPro; IPR029099; Pribosyltran_N. DR InterPro; IPR029057; PRTase-like. DR InterPro; IPR005946; Rib-P_diPkinase. DR Pfam; PF14572; Pribosyl_synth; 1. DR Pfam; PF13793; Pribosyltran_N; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR01251; ribP_PPkin; 1. DR PROSITE; PS00114; PRPP_SYNTHASE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Kinase; Magnesium; KW Metal-binding; Nucleotide biosynthesis; Nucleotide-binding; KW Reference proteome; Transferase. FT CHAIN 1 318 Ribose-phosphate pyrophosphokinase. FT /FTId=PRO_0000141144. FT NP_BIND 46 48 ATP. {ECO:0000255|HAMAP-Rule:MF_00583}. FT NP_BIND 105 108 ATP. {ECO:0000255|HAMAP-Rule:MF_00583}. FT REGION 201 203 Ribose-5-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00583}. FT REGION 228 235 Ribose-5-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00583}. FT REGION 312 314 Ribose-5-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00583}. FT METAL 137 137 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00583}. FT METAL 139 139 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00583}. FT METAL 148 148 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00583}. FT METAL 152 152 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00583}. FT BINDING 113 113 Ribose-5-phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00583}. FT BINDING 139 139 ATP. {ECO:0000255|HAMAP-Rule:MF_00583}. FT BINDING 144 144 ATP. {ECO:0000255|HAMAP-Rule:MF_00583}. FT BINDING 178 178 Ribose-5-phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00583}. SQ SEQUENCE 318 AA; 34825 MW; 7692D2B6F80C52E0 CRC64; MKARGFKAKM RGFKIFSGSA HPAFGKEVSK HLGFPLSKAV IGKFSDGEIN IQISESVRGK DIFIIQPTCV PVNDNLMELL VMVDALRRSS ANSITAVLPY FGYARQDRKA APRVPITAKM VANLMQEVGI ERIITMDLHA GQIQGFFDVP VDNLYGSIVF RDYIRSKALK NPVIASPDVG GVTRARYFAN QMGLDLIIVD KRREKANESE VMNIIGSAKE RDVILVDDMI DTAGTICKAA LALKEQGATS VMALGTHAVL SGNAIKRIKE SALDEVVVTN SIPLVQKCDK ITTLSVAPLF AEVIRRIYHN ESVQSLFT // ID KDGL_HELPY Reviewed; 128 AA. AC P56411; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Diacylglycerol kinase; DE Short=DAGK; DE EC=2.7.1.107; DE AltName: Full=Diglyceride kinase; DE Short=DGK; GN Name=dgkA; OrderedLocusNames=HP_0700; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Recycling of diacylglycerol produced during the turnover CC of membrane phospholipid. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + 1,2-diacyl-sn-glycerol = ADP + 1,2- CC diacyl-sn-glycerol 3-phosphate. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the bacterial diacylglycerol kinase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07752.1; -; Genomic_DNA. DR PIR; D64607; D64607. DR RefSeq; NP_207494.1; NC_000915.1. DR RefSeq; WP_001279026.1; NC_018939.1. DR ProteinModelPortal; P56411; -. DR STRING; 85962.HP0700; -. DR PaxDb; P56411; -. DR PRIDE; P56411; -. DR EnsemblBacteria; AAD07752; AAD07752; HP_0700. DR GeneID; 898913; -. DR KEGG; heo:C694_03610; -. DR KEGG; hpy:HP0700; -. DR PATRIC; 20592687; VBIHelPyl33062_0732. DR eggNOG; ENOG41080IJ; Bacteria. DR eggNOG; COG0818; LUCA. DR KO; K00901; -. DR OMA; KCAWVEE; -. DR OrthoDB; EOG60W7XM; -. DR BioCyc; HPY:HP0700-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004143; F:diacylglycerol kinase activity; IEA:UniProtKB-EC. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-KW. DR InterPro; IPR000829; Diacylglycerol_kinase_prok. DR Pfam; PF01219; DAGK_prokar; 1. DR PROSITE; PS01069; DAGK_PROKAR; 1. PE 3: Inferred from homology; KW ATP-binding; Cell inner membrane; Cell membrane; Complete proteome; KW Kinase; Lipid biosynthesis; Lipid metabolism; Membrane; KW Nucleotide-binding; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 128 Diacylglycerol kinase. FT /FTId=PRO_0000195264. FT TOPO_DOM 1 34 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 35 55 Helical. {ECO:0000255}. FT TOPO_DOM 56 57 Periplasmic. {ECO:0000255}. FT TRANSMEM 58 78 Helical. {ECO:0000255}. FT TOPO_DOM 79 106 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 107 127 Helical. {ECO:0000255}. SQ SEQUENCE 128 AA; 14527 MW; F788FB3CFBDB59E8 CRC64; MSDFEVPPKA KGFKRLFKAL FYSKDGLKCA WIEESAFRQI VILALFCIVL ASYLAKDFLE WGLLILPCFL SVVVELINSS IEKAVDFTGT EFHPLAKKAK DMASAAQLIG LIFWTLIWGR YLLALYLK // ID KHSE_HELPY Reviewed; 293 AA. AC O25690; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Homoserine kinase {ECO:0000255|HAMAP-Rule:MF_00384}; DE Short=HK {ECO:0000255|HAMAP-Rule:MF_00384}; DE Short=HSK {ECO:0000255|HAMAP-Rule:MF_00384}; DE EC=2.7.1.39 {ECO:0000255|HAMAP-Rule:MF_00384}; GN Name=thrB {ECO:0000255|HAMAP-Rule:MF_00384}; GN OrderedLocusNames=HP_1050; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the ATP-dependent phosphorylation of L- CC homoserine to L-homoserine phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00384}. CC -!- CATALYTIC ACTIVITY: ATP + L-homoserine = ADP + O-phospho-L- CC homoserine. {ECO:0000255|HAMAP-Rule:MF_00384}. CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 4/5. {ECO:0000255|HAMAP- CC Rule:MF_00384}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00384}. CC -!- SIMILARITY: Belongs to the GHMP kinase family. Homoserine kinase CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00384}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08095.1; -; Genomic_DNA. DR PIR; B64651; B64651. DR RefSeq; NP_207841.1; NC_000915.1. DR RefSeq; WP_000261726.1; NC_018939.1. DR ProteinModelPortal; O25690; -. DR DIP; DIP-3182N; -. DR IntAct; O25690; 1. DR MINT; MINT-168483; -. DR STRING; 85962.HP1050; -. DR PaxDb; O25690; -. DR PRIDE; O25690; -. DR EnsemblBacteria; AAD08095; AAD08095; HP_1050. DR GeneID; 899585; -. DR KEGG; heo:C694_05430; -. DR KEGG; hpy:HP1050; -. DR PATRIC; 20593437; VBIHelPyl33062_1099. DR eggNOG; ENOG4105D5I; Bacteria. DR eggNOG; COG0083; LUCA. DR KO; K00872; -. DR OMA; HNKVPIT; -. DR OrthoDB; EOG6DG2WK; -. DR BioCyc; HPY:HP1050-MONOMER; -. DR UniPathway; UPA00050; UER00064. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004413; F:homoserine kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.890; -; 1. DR HAMAP; MF_00384; Homoser_kinase; 1. DR InterPro; IPR013750; GHMP_kinase_C_dom. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR006203; GHMP_knse_ATP-bd_CS. DR InterPro; IPR000870; Homoserine_kinase. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PIRSF; PIRSF000676; Homoser_kin; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55060; SSF55060; 1. DR TIGRFAMs; TIGR00191; thrB; 1. DR PROSITE; PS00627; GHMP_KINASES_ATP; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; ATP-binding; Complete proteome; Cytoplasm; KW Kinase; Nucleotide-binding; Reference proteome; KW Threonine biosynthesis; Transferase. FT CHAIN 1 293 Homoserine kinase. FT /FTId=PRO_0000156576. FT NP_BIND 83 93 ATP. {ECO:0000255|HAMAP-Rule:MF_00384}. SQ SEQUENCE 293 AA; 32663 MW; EB73D9C95E4F29AF CRC64; MVVSVPATSA NLGPGFDCLG LSLNLRNRFF IEPSSFHAVK LVGEGEGIPK FLTNNIFTKV FYEILKKHGN DGSFKFLLHN KVPITRGMGS SSAMIVGAVA SAFAFLGFDF DRENIVNTAL IYENHPDNIT PAVFGGYNAA FVEKKKVISL KTKIPSFLKA VMVIPNRAIS TKQSRHLLPK RYSVQESVFN LSHASLMTMA IVQGKWDLLR CCSKDRMHQY KRMQTYPVLF AIQKIALENN ALMSTLSGSG SSFFNMCYEE DAPKLKQVLS KKFPKFRVAV LDFDNDGVLI EKD // ID KGUA_HELPY Reviewed; 206 AA. AC P56103; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Guanylate kinase; DE EC=2.7.4.8; DE AltName: Full=GMP kinase; GN Name=gmk; OrderedLocusNames=HP_0321; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Essential for recycling GMP and indirectly, cGMP. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + GMP = ADP + GDP. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the guanylate kinase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 guanylate kinase-like domain. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07389.1; -; Genomic_DNA. DR PIR; A64560; A64560. DR RefSeq; NP_207119.1; NC_000915.1. DR RefSeq; WP_000551230.1; NC_018939.1. DR ProteinModelPortal; P56103; -. DR DIP; DIP-3426N; -. DR IntAct; P56103; 3. DR MINT; MINT-185893; -. DR STRING; 85962.HP0321; -. DR PaxDb; P56103; -. DR PRIDE; P56103; -. DR EnsemblBacteria; AAD07389; AAD07389; HP_0321. DR GeneID; 900200; -. DR KEGG; heo:C694_01625; -. DR KEGG; hpy:HP0321; -. DR PATRIC; 20591873; VBIHelPyl33062_0334. DR eggNOG; ENOG4108UHA; Bacteria. DR eggNOG; COG0194; LUCA. DR KO; K00942; -. DR OMA; MELQSIV; -. DR OrthoDB; EOG6CP410; -. DR BioCyc; HPY:HP0321-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004385; F:guanylate kinase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00328; Guanylate_kinase; 1. DR InterPro; IPR008145; GK/Ca_channel_bsu. DR InterPro; IPR008144; Guanylate_kin-like_dom. DR InterPro; IPR017665; Guanylate_kinase. DR InterPro; IPR020590; Guanylate_kinase_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00625; Guanylate_kin; 1. DR SMART; SM00072; GuKc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR03263; guanyl_kin; 1. DR PROSITE; PS00856; GUANYLATE_KINASE_1; 1. DR PROSITE; PS50052; GUANYLATE_KINASE_2; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Kinase; Nucleotide-binding; KW Reference proteome; Transferase. FT CHAIN 1 206 Guanylate kinase. FT /FTId=PRO_0000170547. FT DOMAIN 5 183 Guanylate kinase-like. FT NP_BIND 12 19 ATP. {ECO:0000250}. SQ SEQUENCE 206 AA; 23830 MW; AED9253D02C36A13 CRC64; MHNDFNLLIL SGPSGAGKST LTKYLQEKIP KTHFSLSTTT RKPREGEVDG LHYNFVSEEE FKQGIEKGQF LEWAIVHNHY YGTSKIPVEK ALKEGKIVIF DIDVQGHEIL KKHYPNACSV FISTKNQEIL KERLLLRGTD SKETIEKRLI NAYKEMQCLE SFDYLIINED LEKSKEIILS IAKTLVHRLK AFNFEKICKA WKNETL // ID KDSB_HELPY Reviewed; 243 AA. AC O25016; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; DE EC=2.7.7.38; DE AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; DE Short=CKS; DE Short=CMP-KDO synthase; GN Name=kdsB; OrderedLocusNames=HP_0230; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Activates KDO (a required 8-carbon sugar) for CC incorporation into bacterial lipopolysaccharide in Gram-negative CC bacteria. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: CTP + 3-deoxy-D-manno-octulosonate = CC diphosphate + CMP-3-deoxy-D-manno-octulosonate. CC -!- PATHWAY: Nucleotide-sugar biosynthesis; CMP-3-deoxy-D-manno- CC octulosonate biosynthesis; CMP-3-deoxy-D-manno-octulosonate from CC 3-deoxy-D-manno-octulosonate and CTP: step 1/1. CC -!- PATHWAY: Bacterial outer membrane biogenesis; lipopolysaccharide CC biosynthesis. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the KdsB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07299.1; -; Genomic_DNA. DR PIR; F64548; F64548. DR RefSeq; NP_207028.1; NC_000915.1. DR RefSeq; WP_000584045.1; NC_018939.1. DR ProteinModelPortal; O25016; -. DR DIP; DIP-3346N; -. DR IntAct; O25016; 1. DR MINT; MINT-185997; -. DR STRING; 85962.HP0230; -. DR PaxDb; O25016; -. DR PRIDE; O25016; -. DR EnsemblBacteria; AAD07299; AAD07299; HP_0230. DR GeneID; 900127; -. DR KEGG; heo:C694_01160; -. DR KEGG; hpy:HP0230; -. DR PATRIC; 20591685; VBIHelPyl33062_0241. DR eggNOG; ENOG4105CET; Bacteria. DR eggNOG; COG1212; LUCA. DR KO; K00979; -. DR OMA; NSGTERC; -. DR OrthoDB; EOG6KT2SK; -. DR BioCyc; HPY:HP0230-MONOMER; -. DR UniPathway; UPA00030; -. DR UniPathway; UPA00358; UER00476. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008690; F:3-deoxy-manno-octulosonate cytidylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0033468; P:CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019294; P:keto-3-deoxy-D-manno-octulosonic acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.550.10; -; 1. DR HAMAP; MF_00057; CMP_KDO_synth; 1. DR InterPro; IPR003329; Cytidylyl_trans. DR InterPro; IPR004528; KdsB. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR PANTHER; PTHR21485:SF4; PTHR21485:SF4; 1. DR Pfam; PF02348; CTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR00466; kdsB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Lipopolysaccharide biosynthesis; KW Nucleotidyltransferase; Reference proteome; Transferase. FT CHAIN 1 243 3-deoxy-manno-octulosonate FT cytidylyltransferase. FT /FTId=PRO_0000188507. SQ SEQUENCE 243 AA; 27481 MW; 8DB0BDF0D600180F CRC64; MIIIPARLKS SRFENKVLED IFGLPMVVRC AKNANLVDEC VVACDDESIM QTCQKFHIKA VLTSKHHNSG TERCLEAARI LGLKNDERVL NLQGDEPFLE KEVILALLEA TKNAPFMATC AKVIDEEQAK SPNLVKVVLD SQNNALYFSR SLIPFLRDFD AKRQTPLLGH IGIYGFHNKE ILEELCALKP CVLEEIEKLE QLRALYYQKK IAVKIVQSES VGIDTQEDLQ NALKIFSPDL LER // ID LEP_HELPY Reviewed; 290 AA. AC O25300; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Signal peptidase I; DE Short=SPase I; DE EC=3.4.21.89; DE AltName: Full=Leader peptidase I; GN Name=lepB; OrderedLocusNames=HP_0576; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Cleavage of hydrophobic, N-terminal signal or CC leader sequences from secreted and periplasmic proteins. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass CC type II membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the peptidase S26 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07643.1; -; Genomic_DNA. DR PIR; H64591; H64591. DR RefSeq; NP_207371.1; NC_000915.1. DR RefSeq; WP_000670710.1; NC_018939.1. DR ProteinModelPortal; O25300; -. DR IntAct; O25300; 2. DR STRING; 85962.HP0576; -. DR PaxDb; O25300; -. DR PRIDE; O25300; -. DR EnsemblBacteria; AAD07643; AAD07643; HP_0576. DR GeneID; 899281; -. DR KEGG; heo:C694_02970; -. DR KEGG; hpy:HP0576; -. DR PATRIC; 20592425; VBIHelPyl33062_0601. DR eggNOG; ENOG4105C3F; Bacteria. DR eggNOG; COG0681; LUCA. DR KO; K03100; -. DR OMA; AFIIPSR; -. DR OrthoDB; EOG6KDKTM; -. DR BioCyc; HPY:HP0576-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008236; F:serine-type peptidase activity; IEA:InterPro. DR Gene3D; 2.10.109.10; -; 2. DR InterPro; IPR000223; Pept_S26A_signal_pept_1. DR InterPro; IPR019758; Pept_S26A_signal_pept_1_CS. DR InterPro; IPR028360; Peptidase_S24/S26_b-rbn. DR InterPro; IPR019759; Peptidase_S24_S26. DR InterPro; IPR015927; Peptidase_S24_S26A/B/C. DR PANTHER; PTHR12383; PTHR12383; 3. DR Pfam; PF00717; Peptidase_S24; 1. DR PRINTS; PR00727; LEADERPTASE. DR SUPFAM; SSF51306; SSF51306; 1. DR TIGRFAMs; TIGR02227; sigpep_I_bact; 1. DR PROSITE; PS00761; SPASE_I_3; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Hydrolase; Membrane; Protease; KW Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 290 Signal peptidase I. FT /FTId=PRO_0000109508. FT TOPO_DOM 1 13 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 14 34 Helical. {ECO:0000255}. FT TOPO_DOM 35 290 Extracellular. {ECO:0000255}. FT ACT_SITE 38 38 {ECO:0000250}. FT ACT_SITE 106 106 {ECO:0000250}. SQ SEQUENCE 290 AA; 33710 MW; F3DF2DFCE8465310 CRC64; MKFLRSVYAF CSSWVGTIVI VLLVIFFIAQ AFIIPSRSMV GTLYEGDMLF VKKFSYGIPI PKIPWIELPV MPDFKNNGHL IEGDRPKRGE VVVFIPPHEK KSYYVKRNFA IGGDEVLFTN EGFYLHPFES DTDKNYIAKH YPNAMTKEFM GKIFVLNPYK NEHPGIHYQK DNETFHLMEQ LATQGAEANI SMQLIQMEGE KVFYKKINDD EFFMIGDNRD NSSDSRFWGS VAYKNIVGSP WFVYFSLSLK NSLEMDAENN PKKRYLVRWE RMFKSVGGLE KIIKKENATH // ID KTHY_HELPY Reviewed; 191 AA. AC O26009; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Thymidylate kinase; DE EC=2.7.4.9; DE AltName: Full=dTMP kinase; GN Name=tmk; OrderedLocusNames=HP_1474; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Phosphorylation of dTMP to form dTDP in both de novo and CC salvage pathways of dTTP synthesis. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + dTMP = ADP + dTDP. CC -!- INTERACTION: CC O25533:coaX; NbExp=2; IntAct=EBI-528054, EBI-528040; CC -!- SIMILARITY: Belongs to the thymidylate kinase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08513.1; -; Genomic_DNA. DR PIR; B64704; B64704. DR RefSeq; NP_208265.1; NC_000915.1. DR RefSeq; WP_000289698.1; NC_018939.1. DR ProteinModelPortal; O26009; -. DR DIP; DIP-3553N; -. DR IntAct; O26009; 1. DR MINT; MINT-175168; -. DR STRING; 85962.HP1474; -. DR PaxDb; O26009; -. DR PRIDE; O26009; -. DR EnsemblBacteria; AAD08513; AAD08513; HP_1474. DR GeneID; 899818; -. DR KEGG; heo:C694_07630; -. DR KEGG; hpy:HP1474; -. DR PATRIC; 20594359; VBIHelPyl33062_1548. DR eggNOG; ENOG4108ZMD; Bacteria. DR eggNOG; COG0125; LUCA. DR KO; K00943; -. DR OMA; KFGCEVL; -. DR OrthoDB; EOG64JFSH; -. DR BioCyc; HPY:HP1474-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004798; F:thymidylate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006233; P:dTDP biosynthetic process; IEA:InterPro. DR GO; GO:0006235; P:dTTP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00165; Thymidylate_kinase; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR018095; Thymidylate_kin_CS. DR InterPro; IPR018094; Thymidylate_kinase. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00041; DTMP_kinase; 1. DR PROSITE; PS01331; THYMIDYLATE_KINASE; 1. PE 1: Evidence at protein level; KW ATP-binding; Complete proteome; Kinase; Nucleotide biosynthesis; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 191 Thymidylate kinase. FT /FTId=PRO_0000155283. FT NP_BIND 7 14 ATP. {ECO:0000255}. SQ SEQUENCE 191 AA; 21363 MW; 58F9F4BEA2F909C7 CRC64; MYVVLEGVDG AGKSTQVELL KDRFKNALFT KEPGGTRMGE SLRRIALNEN ISELARAFLF LSDRAEHTES VIKPALKEKK LIISDRSLIS GMAYSQFSSL ELNLLATQSV LPAKIILLLI DKEGLKQRLS LKSLDKIENQ GIEKLLHIQQ KLKTHAYALQ EKFGCEVLEL DAKESVKNLH EKIAAFIKCA V // ID LEPA_HELPY Reviewed; 602 AA. AC O25122; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE RecName: Full=Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; DE Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071}; DE EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071}; DE AltName: Full=Ribosomal back-translocase LepA {ECO:0000255|HAMAP-Rule:MF_00071}; GN Name=lepA {ECO:0000255|HAMAP-Rule:MF_00071}; GN OrderedLocusNames=HP_0355; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for accurate and efficient protein synthesis CC under certain stress conditions. May act as a fidelity factor of CC the translation reaction, by catalyzing a one-codon backward CC translocation of tRNAs on improperly translocated ribosomes. Back- CC translocation proceeds from a post-translocation (POST) complex to CC a pre-translocation (PRE) complex, thus giving elongation factor G CC a second chance to translocate the tRNAs correctly. Binds to CC ribosomes in a GTP-dependent manner. {ECO:0000255|HAMAP- CC Rule:MF_00071}. CC -!- CATALYTIC ACTIVITY: GTP + H(2)O = GDP + phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00071}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00071}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00071}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_00071}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. LepA CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00071}. CC -!- SIMILARITY: Contains 1 tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07423.1; -; Genomic_DNA. DR PIR; C64564; C64564. DR RefSeq; NP_207153.1; NC_000915.1. DR RefSeq; WP_000849893.1; NC_000915.1. DR ProteinModelPortal; O25122; -. DR DIP; DIP-3049N; -. DR IntAct; O25122; 11. DR MINT; MINT-164292; -. DR STRING; 85962.HP0355; -. DR PaxDb; O25122; -. DR PRIDE; O25122; -. DR EnsemblBacteria; AAD07423; AAD07423; HP_0355. DR GeneID; 900304; -. DR KEGG; hpy:HP0355; -. DR PATRIC; 20591943; VBIHelPyl33062_0368. DR eggNOG; ENOG4105C4S; Bacteria. DR eggNOG; COG0481; LUCA. DR KO; K03596; -. DR OMA; KPMVFCG; -. DR OrthoDB; EOG6ZKXQ4; -. DR BioCyc; HPY:HP0355-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0043022; F:ribosome binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR GO; GO:0045727; P:positive regulation of translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.240; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00071; LepA; 1. DR InterPro; IPR006297; EF-4. DR InterPro; IPR009022; EFG_III-V. DR InterPro; IPR000640; EFG_V. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR013842; LepA_GTP-bd_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR Pfam; PF00679; EFG_C; 1. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR Pfam; PF06421; LepA_C; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54980; SSF54980; 2. DR TIGRFAMs; TIGR01393; lepA; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; GTP-binding; KW Hydrolase; Membrane; Nucleotide-binding; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 602 Elongation factor 4. FT /FTId=PRO_0000176282. FT DOMAIN 8 189 tr-type G. FT NP_BIND 20 25 GTP. {ECO:0000255|HAMAP-Rule:MF_00071}. FT NP_BIND 136 139 GTP. {ECO:0000255|HAMAP-Rule:MF_00071}. SQ SEQUENCE 602 AA; 66893 MW; 0F5E3E521B457E89 CRC64; MKTKAPMKNI RNFSIIAHID HGKSTLADCL ISECNAISNR EMKSQVMDTM DIEKERGITI KAQSVRLNYT FKGEDYVLNL IDTPGHVDFS YEVSRSLCSC EGALLVVDAT QGVEAQTIAN TYIALDNHLE ILPVINKIDL PNANVLEVKQ DIEDTIGIDC SNTNEVSAKA RLGIKDLLEK IITTIPAPSG DFNAPLKALI YDSWFDNYLG ALALVRIMDG SINTEQEILV MGTGKKHGVL GLYYPNPLKK IPTKSLECGE IGIVSLGLKS VTDIAVGDTL TDAKNPTSKP IEGFMPAKPF VFAGLYPIET DRFEDLREAL LKLQLNDCAL NFEPESSVAL GFGFRVGFLG LLHMEVIKER LEREFGLNLI ATAPTVVYEV HLTDNSIKYV QNPSELPPEN CIACIKEPFV RATIITPSEF LGNLMQLLNN KRGIQEKMEY LNQSRVMLTY SLPSNEIVMD FYDKLKSCTK GYASFDYEPI ENREANLVKL DVRVAGDVVD ALSIIIDKNK AYEKGRALVE TMKELIPRQL FEVAIQASVG NKIIARETIK SVGKNVTAKC YGGDITRKRK LLEKQKEGKK RMKAIGKVEL PQEAFLAILK ID // ID LOLA_HELPY Reviewed; 184 AA. AC O25474; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=Outer-membrane lipoprotein carrier protein; DE Flags: Precursor; GN Name=lolA; OrderedLocusNames=HP_0785; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates in the translocation of lipoproteins from CC the inner membrane to the outer membrane. Only forms a complex CC with a lipoprotein if the residue after the N-terminal Cys is not CC an aspartate (The Asp acts as a targeting signal to indicate that CC the lipoprotein should stay in the inner membrane) (By CC similarity). {ECO:0000250}. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the LolA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07829.1; -; Genomic_DNA. DR PIR; A64618; A64618. DR RefSeq; NP_207578.1; NC_000915.1. DR RefSeq; WP_001201065.1; NC_018939.1. DR ProteinModelPortal; O25474; -. DR DIP; DIP-3763N; -. DR IntAct; O25474; 1. DR MINT; MINT-184751; -. DR STRING; 85962.HP0785; -. DR PaxDb; O25474; -. DR PRIDE; O25474; -. DR EnsemblBacteria; AAD07829; AAD07829; HP_0785. DR GeneID; 899345; -. DR KEGG; heo:C694_04025; -. DR KEGG; hpy:HP0785; -. DR PATRIC; 20592857; VBIHelPyl33062_0817. DR eggNOG; ENOG4105ZGC; Bacteria. DR eggNOG; COG2834; LUCA. DR KO; K03634; -. DR OMA; PKDENID; -. DR OrthoDB; EOG683S93; -. DR BioCyc; HPY:HP0785-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell. DR GO; GO:0042954; F:lipoprotein transporter activity; IEA:InterPro. DR HAMAP; MF_00240; LolA; 1. DR InterPro; IPR029046; LolA/LolB/LppX. DR InterPro; IPR004564; OM_lipoprot_carrier_LolA-like. DR InterPro; IPR018323; OM_lipoprot_carrier_LolA_Pbac. DR Pfam; PF03548; LolA; 1. DR SUPFAM; SSF89392; SSF89392; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Periplasm; Protein transport; KW Reference proteome; Signal; Transport. FT SIGNAL 1 19 {ECO:0000255}. FT CHAIN 20 184 Outer-membrane lipoprotein carrier FT protein. FT /FTId=PRO_0000018262. SQ SEQUENCE 184 AA; 21481 MW; B0DC655A9C06D656 CRC64; MRAFLKILMV LIFMSVAYAK NPSTLSKEEE VLQHLQSFSA HFKQVLKNEK PLVYYGVLKA KAPNWALWVY EKPLKKEIYM NDKEVVIYEP NLFQATITPL KDKTDFFTIL KRLKKQDDGS FKTTINKTTY RLVFKDGKPF SLEFKDGMNN LVTITFSQAE INPTIANEIF VFKPKDENID IVRQ // ID LPP20_HELPY Reviewed; 175 AA. AC P0A0V0; P53436; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 11-NOV-2015, entry version 58. DE RecName: Full=LPP20 lipoprotein; DE Flags: Precursor; GN Name=lpp20; OrderedLocusNames=HP_1456; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 40-71 AND RP 109-134, AND MASS SPECTROMETRY. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=7928954; RA Kostrzynska M., O'Toole P.W., Taylor D.E., Trust T.J.; RT "Molecular characterization of a conserved 20-kilodalton membrane- RT associated lipoprotein antigen of Helicobacter pylori."; RL J. Bacteriol. 176:5938-5948(1994). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Could play a role in the pathogenesis of H.pylori by CC serving as an inflammatory mediator. CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000305}; Lipid- CC anchor {ECO:0000305}. CC -!- PTM: The N-terminus is blocked. CC -!- MASS SPECTROMETRY: Mass=18283; Mass_error=150; Method=MALDI; CC Range=22-175; Evidence={ECO:0000269|PubMed:7928954}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U12429; AAA50860.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08494.1; -; Genomic_DNA. DR PIR; H64701; H64701. DR RefSeq; NP_208247.1; NC_000915.1. DR RefSeq; WP_000795978.1; NC_018939.1. DR ProteinModelPortal; P0A0V0; -. DR IntAct; P0A0V0; 2. DR STRING; 85962.HP1456; -. DR PaxDb; P0A0V0; -. DR PRIDE; P0A0V0; -. DR EnsemblBacteria; AAD08494; AAD08494; HP_1456. DR GeneID; 899837; -. DR KEGG; heo:C694_07540; -. DR KEGG; hpy:HP1456; -. DR PATRIC; 20594321; VBIHelPyl33062_1529. DR OMA; QSHEARE; -. DR OrthoDB; EOG6N9496; -. DR BioCyc; HPY:HP1456-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR002217; Lipo_LPP20. DR InterPro; IPR024952; Lipo_LPP20-like. DR Pfam; PF02169; LPP20; 1. DR PIRSF; PIRSF011368; Lipo_LPP20; 1. DR PRINTS; PR01019; LIPOLPP20. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 1: Evidence at protein level; KW Cell outer membrane; Complete proteome; Direct protein sequencing; KW Lipoprotein; Membrane; Palmitate; Reference proteome; Signal. FT SIGNAL 1 21 {ECO:0000305}. FT CHAIN 22 175 LPP20 lipoprotein. FT /FTId=PRO_0000018105. FT LIPID 22 22 N-palmitoyl cysteine. {ECO:0000305}. FT LIPID 22 22 S-diacylglycerol cysteine. {ECO:0000305}. FT VARIANT 16 16 A -> T (in strain: NCTC 11638). FT VARIANT 152 152 V -> G (in strain: NCTC 11638). SQ SEQUENCE 175 AA; 19108 MW; BBB8359E03C8458A CRC64; MKNQVKKILG MSVVAAMVIV GCSHAPKSGI SKSNKAYKEA TKGAPDWVVG DLEKVAKYEK YSGVFLGRAE DLITNNDVDY STNQATAKAR ANLAANLKST LQKDLENEKT RTVDASGKRS ISGTDTEKIS QLVDKELIAS KMLARYVGKD RVFVLVGLDK QIVDKVREEL GMVKK // ID LPXE_HELPY Reviewed; 190 AA. AC O24866; Q1PDD4; DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Lipid A 1-phosphatase {ECO:0000303|PubMed:15489235}; DE EC=3.1.-.- {ECO:0000305}; GN Name=lpxE {ECO:0000303|PubMed:15489235}; GN OrderedLocusNames=HP_0021, C694_00100; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, SUBSTRATE SPECIFICITY, RP COFACTOR, BIOPHYSICOCHEMICAL PROPERTIES, SUBCELLULAR LOCATION, AND RP STRUCTURE OF LIPID A. RC STRAIN=ATCC 700392 / 26695; RX PubMed=15489235; DOI=10.1074/jbc.M406480200; RA Tran A.X., Karbarz M.J., Wang X., Raetz C.R., McGrath S.C., RA Cotter R.J., Trent M.S.; RT "Periplasmic cleavage and modification of the 1-phosphate group of RT Helicobacter pylori lipid A."; RL J. Biol. Chem. 279:55780-55791(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [4] RP FUNCTION, SUBSTRATE SPECIFICITY, PATHWAY, SUBCELLULAR LOCATION, RP DISRUPTION PHENOTYPE, STRUCTURE OF LIPID A, AND ANTIBIOTIC RESISTANCE. RC STRAIN=ATCC 700392 / 26695, Cp20-84, Hp7-91, and Hsp110-93; RX PubMed=16740959; DOI=10.1128/JB.00146-06; RA Tran A.X., Whittimore J.D., Wyrick P.B., McGrath S.C., Cotter R.J., RA Trent M.S.; RT "The lipid A 1-phosphatase of Helicobacter pylori is required for RT resistance to the antimicrobial peptide polymyxin."; RL J. Bacteriol. 188:4531-4541(2006). CC -!- FUNCTION: Removes the 1-phosphate group from tetra- and probably CC hexaacylated lipid A species, has no requirement for the Kdo CC moiety of lipid A (PubMed:15489235). Has no 4'-phosphatase CC activity (PubMed:15489235, PubMed:16740959). Has no activity on CC phospholipids (phosphatidylglycerol, phosphatidylethanolamine or CC cardiolipin). This enzyme has to act before EptA can attach CC phosphoethanolamine to the 1-position of lipid A CC (PubMed:16740959). Absence of the 1-phosphate group renders the CC bacteria partially resistant to host-derived cationic CC antimicrobial peptides (CAMP), allowing it to camouflage itself CC from the host innate immune response, and plays a role in the CC long-term colonization of the host's stomach (By similarity). CC {ECO:0000250|UniProtKB:Q9ZN40, ECO:0000269|PubMed:15489235, CC ECO:0000269|PubMed:16740959}. CC -!- COFACTOR: CC Note=Does not require divalent cations. CC {ECO:0000269|PubMed:15489235}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC pH dependence: CC Optimum pH is 6.0, activity is seen from pH 5.5 to 8.0. CC {ECO:0000269|PubMed:15489235}; CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS lipid A CC biosynthesis. {ECO:0000305|PubMed:16740959}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000305|PubMed:15489235, ECO:0000305|PubMed:16740959}; Multi- CC pass membrane protein {ECO:0000255}. Note=Activity depends on msbA CC function when expressed in E.coli, strongly suggesting this CC protein acts in the periplasm (MsbA flips the lipopolysaccharide CC precursor across the inner cell membrane). CC {ECO:0000269|PubMed:15489235}. CC -!- DISRUPTION PHENOTYPE: Lipid A retains the 1-phosphate group; none CC of the lipid A species have the usual phosphoethanolamine residue CC at the 1-position as the enzyme responsible (EptA) cannot act on a CC phosphorylated residue. In strain 26695 95% is hexaacylated (16 to CC 18 carbons in length) with both 1- and 4'-phosphate groups, 5% is CC tetraacylated with only 1-phosphate. In 4 other strains (Cp20-84, CC Hp7-91, Hsp110-93 and J99) only the 1-phosphate tetraacylated CC species is seen. Over 1250-fold decrease (strain 26695) or 10-fold CC decrease (strain Hp7-91) in resistance to cationic antimicrobial CC peptide (CAMP) polymyxin B (PMB); strain 26695 is probably more CC sensitive because it has a more negatively charged cell surface CC and thus binds more CAMP. In strain Hp7-91 upon exposure to PMB CC the cells round into a coccoid form, the outer membrane forms CC ruffles, invaginates and in some cases the periplasmic region CC increases in volume. {ECO:0000269|PubMed:16740959}. CC -!- MISCELLANEOUS: In this organism most lipid A is tetraacylated CC without a phosphate group at the 4'-position and a CC phosphoethanolamine residue at the 1-position. CC {ECO:0000269|PubMed:15489235, ECO:0000269|PubMed:16740959}. CC -!- SIMILARITY: Belongs to the lipid A LpxE 1-phosphatase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ447324; ABE02821.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07094.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41241.1; -; Genomic_DNA. DR PIR; E64522; E64522. DR RefSeq; NP_206823.1; NC_000915.1. DR RefSeq; WP_000713906.1; NC_018939.1. DR ProteinModelPortal; O24866; -. DR IntAct; O24866; 2. DR STRING; 85962.HP0021; -. DR PaxDb; O24866; -. DR PRIDE; O24866; -. DR EnsemblBacteria; AAD07094; AAD07094; HP_0021. DR EnsemblBacteria; AFV41241; AFV41241; C694_00100. DR GeneID; 899103; -. DR KEGG; heo:C694_00100; -. DR KEGG; hpy:HP0021; -. DR PATRIC; 20591235; VBIHelPyl33062_0019. DR eggNOG; COG0671; LUCA. DR KO; K12977; -. DR OMA; TMLARIY; -. DR OrthoDB; EOG65F8TK; -. DR BioCyc; HPY:HP0021-MONOMER; -. DR UniPathway; UPA00973; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016791; F:phosphatase activity; IDA:UniProtKB. DR GO; GO:0016311; P:dephosphorylation; IDA:GOC. DR GO; GO:0009245; P:lipid A biosynthetic process; IDA:UniProtKB. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 1.20.144.10; -; 1. DR InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase. DR Pfam; PF01569; PAP2; 1. DR SUPFAM; SSF48317; SSF48317; 1. PE 1: Evidence at protein level; KW Antibiotic resistance; Cell inner membrane; Cell membrane; KW Complete proteome; Hydrolase; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Lipopolysaccharide biosynthesis; KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 190 Lipid A 1-phosphatase. FT /FTId=PRO_0000432490. FT TRANSMEM 22 42 Helical; Name=1. {ECO:0000255}. FT TRANSMEM 60 80 Helical; Name=2. {ECO:0000255}. FT TRANSMEM 117 137 Helical; Name=3. {ECO:0000255}. FT TRANSMEM 145 162 Helical; Name=4. {ECO:0000255}. FT TRANSMEM 164 184 Helical; Name=5. {ECO:0000255}. SQ SEQUENCE 190 AA; 21183 MW; FE300DFD237655AD CRC64; MKKFLFKQKF CESLPKSFSK TLLALSLGLI LLGIFAPFPK VPKQPSVPLM FHFTEHYARF IPTILSVAIP LIQRDAVGLF QVANASIATT LLTHTTKRAL NHVTINDQRL GERPYGGNFN MPSGHSSMVG LAVAFLMRRY SFKKYFWLLP LVPLTMLARI YLDMHTIGAV LTGLGVGMLC VSLFTSPKKP // ID LON_HELPY Reviewed; 835 AA. AC P55995; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 17-FEB-2016, entry version 113. DE RecName: Full=Lon protease {ECO:0000255|HAMAP-Rule:MF_01973}; DE EC=3.4.21.53 {ECO:0000255|HAMAP-Rule:MF_01973}; DE AltName: Full=ATP-dependent protease La {ECO:0000255|HAMAP-Rule:MF_01973}; GN Name=lon {ECO:0000255|HAMAP-Rule:MF_01973}; OrderedLocusNames=HP_1379; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: ATP-dependent serine protease that mediates the CC selective degradation of mutant and abnormal proteins as well as CC certain short-lived regulatory proteins. Required for cellular CC homeostasis and for survival from DNA damage and developmental CC changes induced by stress. Degrades polypeptides processively to CC yield small peptide fragments that are 5 to 10 amino acids long. CC Binds to DNA in a double-stranded, site-specific manner. CC {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- CATALYTIC ACTIVITY: Hydrolysis of proteins in presence of ATP. CC {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- SUBUNIT: Homohexamer. Organized in a ring with a central cavity. CC {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- INDUCTION: By heat shock. {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- SIMILARITY: Belongs to the peptidase S16 family. CC {ECO:0000255|HAMAP-Rule:MF_01973}. CC -!- SIMILARITY: Contains 1 Lon N-terminal domain. CC {ECO:0000255|PROSITE-ProRule:PRU01123}. CC -!- SIMILARITY: Contains 1 Lon proteolytic domain. CC {ECO:0000255|PROSITE-ProRule:PRU01122}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08421.1; -; Genomic_DNA. DR PIR; C64692; C64692. DR RefSeq; NP_208170.1; NC_000915.1. DR RefSeq; WP_000133787.1; NC_018939.1. DR ProteinModelPortal; P55995; -. DR SMR; P55995; 638-834. DR DIP; DIP-3184N; -. DR IntAct; P55995; 7. DR MINT; MINT-186118; -. DR STRING; 85962.HP1379; -. DR MEROPS; S16.001; -. DR PaxDb; P55995; -. DR PRIDE; P55995; -. DR EnsemblBacteria; AAD08421; AAD08421; HP_1379. DR GeneID; 900303; -. DR KEGG; heo:C694_07120; -. DR KEGG; hpy:HP1379; -. DR PATRIC; 20594147; VBIHelPyl33062_1444. DR eggNOG; ENOG4105C6P; Bacteria. DR eggNOG; COG0466; LUCA. DR KO; K01338; -. DR OMA; RDHYANF; -. DR OrthoDB; EOG6XHC23; -. DR BioCyc; HPY:HP1379-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004176; F:ATP-dependent peptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0033554; P:cellular response to stress; IEA:UniProtKB-HAMAP. DR GO; GO:0006515; P:misfolded or incompletely synthesized protein catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01973; lon_bact; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR027543; Lon_bac. DR InterPro; IPR004815; Lon_bac/euk-typ. DR InterPro; IPR027065; Lon_Prtase. DR InterPro; IPR003111; LON_substr-bd_dom. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR008269; Pept_S16_C. DR InterPro; IPR008268; Peptidase_S16_AS. DR InterPro; IPR015947; PUA-like_domain. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR PANTHER; PTHR10046; PTHR10046; 1. DR Pfam; PF00004; AAA; 1. DR Pfam; PF05362; Lon_C; 1. DR Pfam; PF02190; LON_substr_bdg; 1. DR PIRSF; PIRSF001174; Lon_proteas; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00464; LON; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF88697; SSF88697; 1. DR TIGRFAMs; TIGR00763; lon; 1. DR PROSITE; PS51787; LON_N; 1. DR PROSITE; PS51786; LON_PROTEOLYTIC; 1. DR PROSITE; PS01046; LON_SER; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Hydrolase; KW Nucleotide-binding; Protease; Reference proteome; Serine protease; KW Stress response. FT CHAIN 1 835 Lon protease. FT /FTId=PRO_0000076137. FT DOMAIN 9 200 Lon N-terminal. {ECO:0000255|PROSITE- FT ProRule:PRU01123}. FT DOMAIN 636 835 Lon proteolytic. {ECO:0000255|PROSITE- FT ProRule:PRU01122}. FT NP_BIND 367 374 ATP. {ECO:0000255|HAMAP-Rule:MF_01973}. FT COMPBIAS 712 716 Poly-Lys. FT ACT_SITE 741 741 {ECO:0000255|HAMAP-Rule:MF_01973}. FT ACT_SITE 784 784 {ECO:0000255|HAMAP-Rule:MF_01973}. SQ SEQUENCE 835 AA; 94419 MW; 4BDA52814191C727 CRC64; MTEDFPKILP LLVEEDTFLY PFMIAPIFLQ NNASIKAVAY AKNNKSLVFI ACQKDKLNDN EAPYYDVGVI GSVMREANMP NGRVKLLFNG IAKGRILEPA KENEQGFLEA QISPIEYLEY DKENIQAIVE VLKEKVITLA NVSSLFPPDL IKALEDNDDP NRIADLIAAA LHLKKDQAYS LFANNNTEQR LLDLIDIVIE ETKTQKLQKE IKSKVHQKME QTNKEYFLKE QLKQIQKELG TDKQRDEDLN QYYQKLESIK PFLKEEAFKE IKKQIDRLSR THADSSDSAT LQNYIETMLD VPFGQYGKKA LDIKHVREQL DKDHYSLKRP KERIVEYFAT MQLLEMRRKK KPEKKDKTKG TILCFYGPPG VGKTSLANSI AKAIERPLVR IALGGLEDVN ELRGHRRTYI GSMPGRIVQG LIEAKKMNPV MVLDEIDKVD RSVRGDPASA LLEILDPEQN TAFRDHYANF SIDLSQVIFI ATANNIDRIP APLRDRMEFI SVSSYTPNEK EEIAKNYLIP QELEKHALKP SEVEISHECL KLIIEKYTRE AGVRDLRRQI ATIMRKVALK YLEDNPHQKG RTKKGKNEKS EDQKSEDQKS ENQKSENKDF CVSITPNNLK EYLERMVFEI DPIDEENKIG IVNGLAWTPV GGDVLKIEVL KIRGKGELKL TGSLGDVMKE SAIIAFSVVK VLLDNETLKV PKIPSETDAE GKKKKKVLKV YNAYDLHLHV PEGATPKDGP SAGIAMASVM ASILCDRATR SEVAMTGELT LSGEVLPIGG LKEKLIAAFK AGIKTALIPV KNYERDLDEI PAEVRENLNI VAVKNIAEVL EKTLL // ID LPXA_HELPY Reviewed; 270 AA. AC O25927; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000255|HAMAP-Rule:MF_00387}; DE Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000255|HAMAP-Rule:MF_00387}; DE EC=2.3.1.129 {ECO:0000255|HAMAP-Rule:MF_00387}; GN Name=lpxA {ECO:0000255|HAMAP-Rule:MF_00387}; GN OrderedLocusNames=HP_1375; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) IN COMPLEX WITH RP R-3-HYDROXY-ACYL CARRIER PROTEIN, AND SUBUNIT. RX PubMed=14579368; DOI=10.1002/prot.10436; RA Lee B.I., Suh S.W.; RT "Crystal structure of UDP-N-acetylglucosamine acyltransferase from RT Helicobacter pylori."; RL Proteins 53:772-774(2003). CC -!- FUNCTION: Involved in the biosynthesis of lipid A, a CC phosphorylated glycolipid that anchors the lipopolysaccharide to CC the outer membrane of the cell. {ECO:0000255|HAMAP-Rule:MF_00387}. CC -!- CATALYTIC ACTIVITY: (R)-3-hydroxytetradecanoyl-[acyl-carrier- CC protein] + UDP-N-acetyl-alpha-D-glucosamine = [acyl-carrier- CC protein] + UDP-3-O-(3-hydroxytetradecanoyl)-N-acetyl-alpha-D- CC glucosamine. {ECO:0000255|HAMAP-Rule:MF_00387}. CC -!- PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid CC IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and CC UDP-N-acetyl-alpha-D-glucosamine: step 1/6. {ECO:0000255|HAMAP- CC Rule:MF_00387}. CC -!- SUBUNIT: Homotrimer. {ECO:0000255|HAMAP-Rule:MF_00387}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00387}. CC -!- SIMILARITY: Belongs to the transferase hexapeptide repeat family. CC LpxA subfamily. {ECO:0000255|HAMAP-Rule:MF_00387}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08418.1; -; Genomic_DNA. DR PIR; G64691; G64691. DR RefSeq; NP_208166.1; NC_000915.1. DR RefSeq; WP_000034151.1; NC_018939.1. DR PDB; 1J2Z; X-ray; 2.10 A; A=1-270. DR PDBsum; 1J2Z; -. DR ProteinModelPortal; O25927; -. DR SMR; O25927; 2-260. DR STRING; 85962.HP1375; -. DR PaxDb; O25927; -. DR PRIDE; O25927; -. DR EnsemblBacteria; AAD08418; AAD08418; HP_1375. DR GeneID; 900308; -. DR KEGG; heo:C694_07095; -. DR KEGG; hpy:HP1375; -. DR PATRIC; 20594139; VBIHelPyl33062_1440. DR eggNOG; ENOG4105DAF; Bacteria. DR eggNOG; COG1043; LUCA. DR KO; K00677; -. DR OMA; MAYCHLG; -. DR OrthoDB; EOG6F81P1; -. DR BioCyc; HPY:HP1375-MONOMER; -. DR UniPathway; UPA00359; UER00477. DR EvolutionaryTrace; O25927; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008780; F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.20.1180.10; -; 1. DR HAMAP; MF_00387; LpxA; 1. DR InterPro; IPR029098; Acetyltransf_C. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR010137; Lipid_A_LpxA. DR InterPro; IPR011004; Trimer_LpxA-like. DR Pfam; PF13720; Acetyltransf_11; 1. DR Pfam; PF00132; Hexapep; 2. DR PIRSF; PIRSF000456; UDP-GlcNAc_acltr; 1. DR SUPFAM; SSF51161; SSF51161; 1. DR TIGRFAMs; TIGR01852; lipid_A_lpxA; 1. DR PROSITE; PS00101; HEXAPEP_TRANSFERASES; 1. PE 1: Evidence at protein level; KW 3D-structure; Acyltransferase; Complete proteome; Cytoplasm; KW Lipid A biosynthesis; Lipid biosynthesis; Lipid metabolism; KW Reference proteome; Repeat; Transferase. FT CHAIN 1 270 Acyl-[acyl-carrier-protein]--UDP-N- FT acetylglucosamine O-acyltransferase. FT /FTId=PRO_0000188052. FT REGION 69 72 Substrate binding. FT BINDING 121 121 Substrate. {ECO:0000250}. FT BINDING 140 140 Substrate. {ECO:0000250}. FT BINDING 157 157 Substrate. {ECO:0000250}. FT STRAND 14 16 {ECO:0000244|PDB:1J2Z}. FT STRAND 48 52 {ECO:0000244|PDB:1J2Z}. FT STRAND 63 65 {ECO:0000244|PDB:1J2Z}. FT STRAND 79 82 {ECO:0000244|PDB:1J2Z}. FT TURN 99 102 {ECO:0000244|PDB:1J2Z}. FT STRAND 103 107 {ECO:0000244|PDB:1J2Z}. FT STRAND 175 177 {ECO:0000244|PDB:1J2Z}. FT STRAND 181 184 {ECO:0000244|PDB:1J2Z}. FT STRAND 189 193 {ECO:0000244|PDB:1J2Z}. FT HELIX 195 201 {ECO:0000244|PDB:1J2Z}. FT HELIX 204 217 {ECO:0000244|PDB:1J2Z}. FT STRAND 220 222 {ECO:0000244|PDB:1J2Z}. FT HELIX 224 234 {ECO:0000244|PDB:1J2Z}. FT HELIX 239 250 {ECO:0000244|PDB:1J2Z}. SQ SEQUENCE 270 AA; 29855 MW; 3668DF2ED248BA4E CRC64; MSKIAKTAII SPKAEINKGV EIGEFCVIGD GVKLDEGVKL HNNVTLQGHT FVGKNTEIFP FAVLGTQPQD LKYKGEYSEL IIGEDNLIRE FCMINPGTEG GIKKTLIGDK NLLMAYVHVA HDCVIGSHCI LANGVTLAGH IEIGDYVNIG GLTAIHQFVR IAKGCMIAGK SALGKDVPPY CTVEGNRAFI RGLNRHRMRQ LLESKDIDFI YALYKRLFRP IPSLRESAKL ELEEHANNPF VKEICSFILE SSRGVAYKSS EYSSEEKQEE // ID LPXB_HELPY Reviewed; 360 AA. AC O25537; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Lipid-A-disaccharide synthase; DE EC=2.4.1.182; GN Name=lpxB; OrderedLocusNames=HP_0867; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Condensation of UDP-2,3-diacylglucosamine and 2,3- CC diacylglucosamine-1-phosphate to form lipid A disaccharide, a CC precursor of lipid A, a phosphorylated glycolipid that anchors the CC lipopolysaccharide to the outer membrane of the cell. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: UDP-2-N,3-O-bis((3R)-3-hydroxytetradecanoyl)- CC alpha-D-glucosamine + 2-N,3-O-bis((3R)-3-hydroxytetradecanoyl)- CC alpha-D-glucosaminyl 1-phosphate = UDP + 2-N,3-O-bis((3R)-3- CC hydroxytetradecanoyl)-beta-D-glucosaminyl-(1->6)-2-N,3-O-bis((3R)- CC 3-hydroxytetradecanoyl)-alpha-D-glucosaminyl 1-phosphate. CC -!- PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid CC IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and CC UDP-N-acetyl-alpha-D-glucosamine: step 5/6. CC -!- SIMILARITY: Belongs to the LpxB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07909.1; -; Genomic_DNA. DR PIR; C64628; C64628. DR RefSeq; NP_207661.1; NC_000915.1. DR RefSeq; WP_001142178.1; NC_018939.1. DR ProteinModelPortal; O25537; -. DR STRING; 85962.HP0867; -. DR CAZy; GT19; Glycosyltransferase Family 19. DR PaxDb; O25537; -. DR PRIDE; O25537; -. DR EnsemblBacteria; AAD07909; AAD07909; HP_0867. DR GeneID; 899396; -. DR KEGG; heo:C694_04440; -. DR KEGG; hpy:HP0867; -. DR PATRIC; 20593023; VBIHelPyl33062_0899. DR eggNOG; ENOG4105D0V; Bacteria. DR eggNOG; COG0763; LUCA. DR KO; K00748; -. DR OMA; SEIAKMF; -. DR OrthoDB; EOG6FBWZR; -. DR BioCyc; HPY:HP0867-MONOMER; -. DR UniPathway; UPA00359; UER00481. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00392; LpxB; 1. DR InterPro; IPR003835; Glyco_trans_19. DR Pfam; PF02684; LpxB; 1. DR TIGRFAMs; TIGR00215; lpxB; 1. PE 3: Inferred from homology; KW Complete proteome; Glycosyltransferase; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Reference proteome; Transferase. FT CHAIN 1 360 Lipid-A-disaccharide synthase. FT /FTId=PRO_0000190169. SQ SEQUENCE 360 AA; 41518 MW; 420421646FCE067D CRC64; MPTILVSALE ASSNAHLEEL RQNLPEDYRF IGVFEGKEVL YSPREFSIMG FRDVIGRLGF LLKAHKEMVQ LAKQADMVLL MDSSSFNIPL AKKIKKQDPH KKIMYYILPQ VWAWKKWRAK SLEKYCDFLG AILPFEVGYY QKKAQYVGHP LLDEIKHYKK DIKGETLVFM PGSRKSEIAK MFPLFVKAAQ MLEQNEGFKR RVLVVPSFFK GLDLKALYGE DIQLFEISYD AHKSLFEAEF AFICSGTATL EAALIGTPFV LAYRAKTMDF LIARMLVNLH YIGLANIFYN ALNNETPGLG ESQLHPELIQ HFLSVEGLLK AYKEMDRERY FKESLRLREY LKHGSARKIA NEMAFLLNLT // ID LGT_HELPY Reviewed; 284 AA. AC O25609; O30584; O30586; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Prolipoprotein diacylglyceryl transferase; DE EC=2.4.99.-; GN Name=lgt; OrderedLocusNames=HP_0955; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=HP439, and HP500; RA Goodwin A., Berg D.E., Hoffman P.S.; RL Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Transfers the N-acyl diglyceride group on what will CC become the N-terminal cysteine of membrane lipoproteins. CC {ECO:0000250}. CC -!- PATHWAY: Protein modification; lipoprotein biosynthesis CC (diacylglyceryl transfer). CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the Lgt family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07998.1; -; Genomic_DNA. DR EMBL; AF012552; AAC46348.1; -; Genomic_DNA. DR EMBL; AF012553; AAC46350.1; -; Genomic_DNA. DR PIR; C64639; C64639. DR RefSeq; NP_207747.1; NC_000915.1. DR RefSeq; WP_000995079.1; NC_018939.1. DR ProteinModelPortal; O25609; -. DR STRING; 85962.HP0955; -. DR PaxDb; O25609; -. DR PRIDE; O25609; -. DR EnsemblBacteria; AAD07998; AAD07998; HP_0955. DR GeneID; 899488; -. DR KEGG; heo:C694_04920; -. DR KEGG; hpy:HP0955; -. DR PATRIC; 20593223; VBIHelPyl33062_0993. DR eggNOG; ENOG4105C3B; Bacteria. DR eggNOG; COG0682; LUCA. DR KO; K13292; -. DR OMA; MWAKKHT; -. DR OrthoDB; EOG6MH5CQ; -. DR BioCyc; HPY:HP0955-MONOMER; -. DR UniPathway; UPA00664; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008961; F:phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042158; P:lipoprotein biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009249; P:protein lipoylation; IEA:InterPro. DR HAMAP; MF_01147; Lgt; 1. DR InterPro; IPR001640; Prolipoprot_diAcglycer_Trfase. DR Pfam; PF01790; LGT; 1. DR TIGRFAMs; TIGR00544; lgt; 1. DR PROSITE; PS01311; LGT; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transferase; Transmembrane; Transmembrane helix. FT CHAIN 1 284 Prolipoprotein diacylglyceryl FT transferase. FT /FTId=PRO_0000172613. FT TRANSMEM 14 34 Helical. {ECO:0000255}. FT TRANSMEM 62 82 Helical. {ECO:0000255}. FT TRANSMEM 106 126 Helical. {ECO:0000255}. FT TRANSMEM 136 156 Helical. {ECO:0000255}. FT TRANSMEM 190 210 Helical. {ECO:0000255}. FT TRANSMEM 218 238 Helical. {ECO:0000255}. FT TRANSMEM 252 272 Helical. {ECO:0000255}. FT VARIANT 20 20 S -> G (in strain: HP439). FT VARIANT 31 31 A -> V (in strain: HP439). FT VARIANT 76 76 I -> V (in strain: HP439). FT VARIANT 87 87 G -> S (in strain: HP439). FT VARIANT 182 182 M -> I (in strain: HP439). FT VARIANT 202 202 I -> V (in strain: HP500). FT VARIANT 217 217 H -> N (in strain: HP500). FT VARIANT 264 264 I -> V (in strain: HP500). SQ SEQUENCE 284 AA; 32643 MW; 696B3ABAE397FFB5 CRC64; MNAWNTIYDQ FNPIAFSLGS IEVHWYGLAY ACAIVTAFYM ALRMIQKDPK RFPIERKEFE SYFLWAELGI VLGARIGYIL IYEPNSGYYL THFWQIFNPF DSHGNFVGIR GMSYHGGLVG FLIASYLYSR KDLKKLLIYL DLIAISLPLG YVFGRIGNFL NQELVGRIVP KDSHLGQIIG IMVDNELRYP SQLIEAFLEG VIVFLMVMWA KKHTKTHGLL IVVYGLGYSL MRFIAEFYRE PDSQMGVYFL NLSMGQILSL FMVIVSLGIL LYATKNSKKI KENQ // ID LUXS_HELPY Reviewed; 155 AA. AC O24931; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=S-ribosylhomocysteine lyase; DE EC=4.4.1.21; DE AltName: Full=AI-2 synthesis protein; DE AltName: Full=Autoinducer-2 production protein LuxS; GN Name=luxS; OrderedLocusNames=HP_0105; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the synthesis of autoinducer 2 (AI-2) which CC is secreted by bacteria and is used to communicate both the cell CC density and the metabolic potential of the environment. The CC regulation of gene expression in response to changes in cell CC density is called quorum sensing. Catalyzes the transformation of CC S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- CC dihydroxy-2,3-pentadione (DPD) (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: S-(5-deoxy-D-ribos-5-yl)-L-homocysteine = L- CC homocysteine + (4S)-4,5-dihydroxypentan-2,3-dione. CC -!- COFACTOR: CC Name=Fe cation; Xref=ChEBI:CHEBI:24875; Evidence={ECO:0000250}; CC Note=Binds 1 Fe cation per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the LuxS family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07175.1; -; Genomic_DNA. DR PIR; A64533; A64533. DR RefSeq; WP_000856671.1; NC_018939.1. DR ProteinModelPortal; O24931; -. DR SMR; O24931; 5-155. DR DIP; DIP-3186N; -. DR IntAct; O24931; 1. DR MINT; MINT-173545; -. DR STRING; 85962.HP0105; -. DR PaxDb; O24931; -. DR EnsemblBacteria; AAD07175; AAD07175; HP_0105. DR KEGG; heo:C694_00520; -. DR PATRIC; 20591425; VBIHelPyl33062_0112. DR eggNOG; ENOG4106762; Bacteria. DR eggNOG; COG1854; LUCA. DR KO; K07173; -. DR OMA; AGFMREH; -. DR OrthoDB; EOG68WRBM; -. DR BioCyc; HPY:HP0105-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0043768; F:S-ribosylhomocysteine lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009372; P:quorum sensing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1360.80; -; 1. DR HAMAP; MF_00091; LuxS; 1. DR InterPro; IPR011249; Metalloenz_LuxS/M16. DR InterPro; IPR003815; S-ribosylhomocysteinase. DR Pfam; PF02664; LuxS; 1. DR PIRSF; PIRSF006160; AI2; 1. DR PRINTS; PR01487; LUXSPROTEIN. DR ProDom; PD013172; S-ribosylhomocysteinase; 1. DR SUPFAM; SSF63411; SSF63411; 1. PE 3: Inferred from homology; KW Autoinducer synthesis; Complete proteome; Iron; Lyase; Metal-binding; KW Quorum sensing; Reference proteome. FT CHAIN 1 155 S-ribosylhomocysteine lyase. FT /FTId=PRO_0000172229. FT METAL 58 58 Iron. {ECO:0000250}. FT METAL 62 62 Iron. {ECO:0000250}. FT METAL 125 125 Iron. {ECO:0000250}. SQ SEQUENCE 155 AA; 17655 MW; A127A9FDBF109E0D CRC64; MKTPKMNVES FNLDHTKVKA PYVRVADRKK GVNGDLIVKY DVRFKQPNQD HMDMPSLHSL EHLVAEIIRN HASYVVDWSP MGCQTGFYLT VLNHDNYTEI LEVLEKTMQD VLKATEVPAS NEKQCGWAAN HTLEGAKDLA RAFLDKRAEW SEVGV // ID LNT_HELPY Reviewed; 425 AA. AC O24982; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Apolipoprotein N-acyltransferase {ECO:0000255|HAMAP-Rule:MF_01148}; DE Short=ALP N-acyltransferase {ECO:0000255|HAMAP-Rule:MF_01148}; DE EC=2.3.1.- {ECO:0000255|HAMAP-Rule:MF_01148}; GN Name=lnt {ECO:0000255|HAMAP-Rule:MF_01148}; OrderedLocusNames=HP_0180; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transfers the fatty acyl group on membrane lipoproteins. CC {ECO:0000255|HAMAP-Rule:MF_01148}. CC -!- PATHWAY: Protein modification; lipoprotein biosynthesis (N-acyl CC transfer). {ECO:0000255|HAMAP-Rule:MF_01148}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01148}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01148}. CC -!- SIMILARITY: Belongs to the CN hydrolase family. Apolipoprotein N- CC acyltransferase subfamily. {ECO:0000255|HAMAP-Rule:MF_01148}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07250.1; -; Genomic_DNA. DR PIR; D64542; D64542. DR RefSeq; NP_206979.1; NC_000915.1. DR RefSeq; WP_001237964.1; NC_018939.1. DR ProteinModelPortal; O24982; -. DR STRING; 85962.HP0180; -. DR PaxDb; O24982; -. DR PRIDE; O24982; -. DR EnsemblBacteria; AAD07250; AAD07250; HP_0180. DR GeneID; 900142; -. DR KEGG; heo:C694_00895; -. DR KEGG; hpy:HP0180; -. DR PATRIC; 20591583; VBIHelPyl33062_0191. DR eggNOG; ENOG4105CE8; Bacteria. DR eggNOG; COG0815; LUCA. DR KO; K03820; -. DR OMA; HPFGFDW; -. DR OrthoDB; EOG6VTJXM; -. DR BioCyc; HPY:HP0180-MONOMER; -. DR UniPathway; UPA00666; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0016410; F:N-acyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042158; P:lipoprotein biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR HAMAP; MF_01148; Lnt; 1. DR InterPro; IPR004563; Apolipo_AcylTrfase. DR InterPro; IPR003010; C-N_Hydrolase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR TIGRFAMs; TIGR00546; lnt; 1. PE 3: Inferred from homology; KW Acyltransferase; Cell inner membrane; Cell membrane; KW Complete proteome; Membrane; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 425 Apolipoprotein N-acyltransferase. FT /FTId=PRO_0000178071. FT TRANSMEM 5 27 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. FT TRANSMEM 37 54 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. FT TRANSMEM 61 78 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. FT TRANSMEM 88 110 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. FT TRANSMEM 117 135 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. FT TRANSMEM 150 167 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01148}. SQ SEQUENCE 425 AA; 48474 MW; 2287520B14B48BBE CRC64; MRLLLFNQNA FLLACMFVSS VYVNAVLDAY AIENPYISIT LTSLLAPLSM LAFLKTPRNS AFALGFFVGA LLFYWCALSF RYSDFTYLLP LIIVLIALVY GVLFYLLLYF ENPYFRLLSF LGSSFIHPFG FDWLVPDSFF SYSVFRVDKL SLGLVFLACI FLSTKPLKKY RIIGVLLLLG ALDFNGFKTS DLKKVGNIEL VSTKTPQDLK FDSSYLNDIE NNILKEIKLA QSKQKTLIVF PETAYPIALE NSPFKAKLED LSDNIAILIG TLRTQGYNLY NSSFLFSKES VQIADKVILA PFGETMPLPE FLQKPLEKLF FGESTYLYRN APHFSDFTLD DFTFRPLICY EGTSKPAYSN SPSKIFIVMS NNAWFSPSIE PTLQRTLLKY YARRYDKIIL HSANFSTSYI LSPSLLGDIL FRKRS // ID LPXK_HELPY Reviewed; 312 AA. AC O25095; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Tetraacyldisaccharide 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; DE EC=2.7.1.130 {ECO:0000255|HAMAP-Rule:MF_00409}; DE AltName: Full=Lipid A 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; GN Name=lpxK {ECO:0000255|HAMAP-Rule:MF_00409}; GN OrderedLocusNames=HP_0328; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transfers the gamma-phosphate of ATP to the 4'-position CC of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- CC P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). CC {ECO:0000255|HAMAP-Rule:MF_00409}. CC -!- CATALYTIC ACTIVITY: ATP + (2-N,3-O-bis((3R)-3- CC hydroxytetradecanoyl)-beta-D-glucosaminyl)-(1->6)-(2-N,3-O- CC bis((3R)-3-hydroxytetradecanoyl)-alpha-D-glucosaminyl phosphate) = CC ADP + (2-N,3-O-bis((3R)-3-hydroxytetradecanoyl)-4-O-phospho-beta- CC D-glucosaminyl)-(1->6)-(2-N,3-O-bis((3R)-3-hydroxytetradecanoyl)- CC alpha-D-glucosaminyl phosphate). {ECO:0000255|HAMAP- CC Rule:MF_00409}. CC -!- PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid CC IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and CC UDP-N-acetyl-alpha-D-glucosamine: step 6/6. {ECO:0000255|HAMAP- CC Rule:MF_00409}. CC -!- SIMILARITY: Belongs to the LpxK family. {ECO:0000255|HAMAP- CC Rule:MF_00409}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07395.1; -; Genomic_DNA. DR PIR; H64560; H64560. DR RefSeq; NP_207126.1; NC_000915.1. DR RefSeq; WP_000833936.1; NC_018939.1. DR ProteinModelPortal; O25095; -. DR STRING; 85962.HP0328; -. DR PaxDb; O25095; -. DR PRIDE; O25095; -. DR EnsemblBacteria; AAD07395; AAD07395; HP_0328. DR GeneID; 898833; -. DR KEGG; heo:C694_01660; -. DR KEGG; hpy:HP0328; -. DR PATRIC; 20591889; VBIHelPyl33062_0342. DR eggNOG; ENOG4105CHD; Bacteria. DR eggNOG; COG1663; LUCA. DR KO; K00912; -. DR OMA; DDGFRFN; -. DR OrthoDB; EOG60GRWT; -. DR BioCyc; HPY:HP0328-MONOMER; -. DR UniPathway; UPA00359; UER00482. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009029; F:tetraacyldisaccharide 4'-kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00409; LpxK; 1. DR InterPro; IPR003758; Tetraacyldisaccharide_4-kinase. DR Pfam; PF02606; LpxK; 2. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Nucleotide-binding; KW Reference proteome; Transferase. FT CHAIN 1 312 Tetraacyldisaccharide 4'-kinase. FT /FTId=PRO_0000190930. FT NP_BIND 60 67 ATP. {ECO:0000255|HAMAP-Rule:MF_00409}. SQ SEQUENCE 312 AA; 35531 MW; 4391E686F9E447CA CRC64; MKSDKPFLER YFYDPTLLQK GLIFALYPFS LIYQGIATLK RKTAKKHDFK IPIISIGNLI AGGSGKTPFI LEIAPRYQEV AVVSRGYQRD SKGLVVVSVK GNILVSQKTA GDEAYLLALN LKQASVIVSE KRELGVLKAL ELGAKIVFLD DGFRFNFNQF NLLLKPKVPP YYPFCLPSGL YRESIKSYEE AHLVVTEDKD YQRITSISRP TKRMLLVTAI ANPSRLDAFL PKEVVKKLYF KDHAPFNLEL LEKEFYQNNA TSLLVTSKDL VKLQDCNLPL SVLNLKLEIC PKVLEEIDHY ILSYPYNTKE RL // ID LPXC_HELPY Reviewed; 295 AA. AC O25692; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE RecName: Full=UDP-3-O-acyl-N-acetylglucosamine deacetylase {ECO:0000255|HAMAP-Rule:MF_00388}; DE Short=UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000255|HAMAP-Rule:MF_00388}; DE EC=3.5.1.108 {ECO:0000255|HAMAP-Rule:MF_00388}; DE AltName: Full=UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase {ECO:0000255|HAMAP-Rule:MF_00388}; GN Name=lpxC {ECO:0000255|HAMAP-Rule:MF_00388}; GN OrderedLocusNames=HP_1052; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- CC acetylglucosamine to form UDP-3-O-myristoylglucosamine and CC acetate, the committed step in lipid A biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00388}. CC -!- CATALYTIC ACTIVITY: UDP-3-O-((3R)-3-hydroxytetradecanoyl)-N- CC acetyl-alpha-D-glucosamine + H(2)O = UDP-3-O-((3R)-3- CC hydroxytetradecanoyl)-alpha-D-glucosamine + acetate. CC {ECO:0000255|HAMAP-Rule:MF_00388}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00388}; CC -!- PATHWAY: Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid CC IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and CC UDP-N-acetyl-alpha-D-glucosamine: step 2/6. {ECO:0000255|HAMAP- CC Rule:MF_00388}. CC -!- SIMILARITY: Belongs to the LpxC family. {ECO:0000255|HAMAP- CC Rule:MF_00388}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08098.1; -; Genomic_DNA. DR PIR; D64651; D64651. DR RefSeq; NP_207843.1; NC_000915.1. DR RefSeq; WP_000815275.1; NC_018939.1. DR ProteinModelPortal; O25692; -. DR DIP; DIP-3457N; -. DR IntAct; O25692; 6. DR MINT; MINT-182315; -. DR STRING; 85962.HP1052; -. DR PaxDb; O25692; -. DR PRIDE; O25692; -. DR EnsemblBacteria; AAD08098; AAD08098; HP_1052. DR GeneID; 899587; -. DR KEGG; heo:C694_05440; -. DR KEGG; hpy:HP1052; -. DR PATRIC; 20593441; VBIHelPyl33062_1101. DR eggNOG; ENOG4105C7C; Bacteria. DR eggNOG; COG0774; LUCA. DR KO; K02535; -. DR OMA; NSMLVKA; -. DR OrthoDB; EOG6PGK74; -. DR BioCyc; HPY:HP1052-MONOMER; -. DR UniPathway; UPA00359; UER00478. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008759; F:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1700.10; -; 1. DR Gene3D; 3.30.230.20; -; 1. DR HAMAP; MF_00388; LpxC; 1. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR004463; UDP-acyl_GlcNac_deAcase. DR InterPro; IPR011334; UDP-acyl_GlcNac_deAcase_C. DR InterPro; IPR015870; UDP-acyl_N-AcGlcN_deAcase_N. DR Pfam; PF03331; LpxC; 1. DR SUPFAM; SSF54211; SSF54211; 2. DR TIGRFAMs; TIGR00325; lpxC; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Metal-binding; KW Reference proteome; Zinc. FT CHAIN 1 295 UDP-3-O-acyl-N-acetylglucosamine FT deacetylase. FT /FTId=PRO_0000191935. FT ACT_SITE 259 259 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00388}. FT METAL 75 75 Zinc; via tele nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00388}. FT METAL 232 232 Zinc; via tele nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00388}. FT METAL 236 236 Zinc. {ECO:0000255|HAMAP-Rule:MF_00388}. SQ SEQUENCE 295 AA; 32542 MW; 2351F204BCECDCAD CRC64; MKQTTINHSV ELVGIGLHKG VPVKLVLEPL GENQGIVFYR SDLGVNLPLK PENIVDTKMA TVLGKDNARI STIEHLLSAV HAYGIDNLKI SVDNEEIPIM DGSALTYCML LDEAGIKELD APKKVMEIKQ AVEIRESDKF VKIEPDSQLS LNFTIDFNHP VIAKQAHHFV FSKTAYKEQV AKARTFGFLQ EVNYLRSIGL AKGGSLNNCI VLDENSILNK EGLRCEKEFV CHKILDAMGD LMVLGMPVMG KYTSFSGSHK LNSMLVKAIL ADAKNYEVLI AADPAKEFAL QKAFA // ID LPXD_HELPY Reviewed; 336 AA. AC O24991; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000255|HAMAP-Rule:MF_00523}; DE EC=2.3.1.- {ECO:0000255|HAMAP-Rule:MF_00523}; GN Name=lpxD {ECO:0000255|HAMAP-Rule:MF_00523}; GN OrderedLocusNames=HP_0196; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the N-acylation of UDP-3-O-acylglucosamine CC using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the CC biosynthesis of lipid A, a phosphorylated glycolipid that anchors CC the lipopolysaccharide to the outer membrane of the cell. CC {ECO:0000255|HAMAP-Rule:MF_00523}. CC -!- CATALYTIC ACTIVITY: (3R)-3-hydroxyacyl-[acyl-carrier-protein] + CC UDP-3-O-acyl-alpha-D-glucosamine = UDP-2,3-diacyl-alpha-D- CC glucosamine + [acyl-carrier-protein]. {ECO:0000255|HAMAP- CC Rule:MF_00523}. CC -!- PATHWAY: Bacterial outer membrane biogenesis; LPS lipid A CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_00523}. CC -!- SUBUNIT: Homotrimer. {ECO:0000255|HAMAP-Rule:MF_00523}. CC -!- SIMILARITY: Belongs to the transferase hexapeptide repeat family. CC LpxD subfamily. {ECO:0000255|HAMAP-Rule:MF_00523}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07263.1; -; Genomic_DNA. DR PIR; D64544; D64544. DR RefSeq; NP_206995.1; NC_000915.1. DR RefSeq; WP_000777041.1; NC_018939.1. DR ProteinModelPortal; O24991; -. DR DIP; DIP-3246N; -. DR IntAct; O24991; 5. DR MINT; MINT-165883; -. DR STRING; 85962.HP0196; -. DR PaxDb; O24991; -. DR PRIDE; O24991; -. DR EnsemblBacteria; AAD07263; AAD07263; HP_0196. DR GeneID; 900138; -. DR KEGG; heo:C694_00975; -. DR KEGG; hpy:HP0196; -. DR PATRIC; 20591613; VBIHelPyl33062_0206. DR eggNOG; ENOG4105D7M; Bacteria. DR eggNOG; COG1044; LUCA. DR KO; K02536; -. DR OMA; GADCVIH; -. DR OrthoDB; EOG6JB11D; -. DR BioCyc; HPY:HP0196-MONOMER; -. DR UniPathway; UPA00973; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016410; F:N-acyltransferase activity; IEA:InterPro. DR GO; GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00523; LpxD; 1. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR007691; LpxD. DR InterPro; IPR011004; Trimer_LpxA-like. DR InterPro; IPR020573; UDP_GlcNAc_AcTrfase_non-rep. DR Pfam; PF00132; Hexapep; 3. DR Pfam; PF04613; LpxD; 1. DR SUPFAM; SSF51161; SSF51161; 1. DR TIGRFAMs; TIGR01853; lipid_A_lpxD; 1. PE 3: Inferred from homology; KW Acyltransferase; Complete proteome; Lipid A biosynthesis; KW Lipid biosynthesis; Lipid metabolism; Reference proteome; Repeat; KW Transferase. FT CHAIN 1 336 UDP-3-O-acylglucosamine N- FT acyltransferase. FT /FTId=PRO_0000059679. FT ACT_SITE 233 233 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00523}. SQ SEQUENCE 336 AA; 36646 MW; 17DAED0C39423497 CRC64; MKLSELLNAY SIETEFSNDF EVHALAELNK ATPNDISYID QARYLKLLKD SKAGAVFIRK KESSKVPKRM QALVVDNPHL AFAKASHAFK IPFFKNPESV NEPKHFERVT IMPNVVIGEG VEIGENSLIY PGVVIADGVK IGKNCILYPR VTLYQNTILE DNVTIHAGSV IGGDGFGYAH TALGEHVKIE HVGIVRIQKN VEIGANTAID RAVFGETLIK EGVKIDNLVQ IGHNCVLGEH SIVVSQVGLS GSTTTGRNVV FGGQVGIGGH LHVGEFTQIG GKSAVGKDLP PNTNFAGAIP AMEIHEWHHF LAHLRTNFRK QQKTSLLQKA KGFFKS // ID LSPA_HELPY Reviewed; 157 AA. AC P25178; DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 16-MAR-2016, entry version 114. DE RecName: Full=Lipoprotein signal peptidase; DE EC=3.4.23.36; DE AltName: Full=Prolipoprotein signal peptidase; DE AltName: Full=Signal peptidase II; DE Short=SPase II; GN Name=lspA; Synonyms=ureD; OrderedLocusNames=HP_0074; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=2001995; RA Labigne A., Cussac V., Courcoux P.; RT "Shuttle cloning and nucleotide sequences of Helicobacter pylori genes RT responsible for urease activity."; RL J. Bacteriol. 173:1920-1931(1991). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein specifically catalyzes the removal of CC signal peptides from prolipoproteins. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Release of signal peptides from bacterial CC membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|- CC (S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably CC Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, CC neutral side chains. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass CC membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the peptidase A8 family. {ECO:0000305}. CC -!- CAUTION: Was originally thought to be related to urease function. CC {ECO:0000305|PubMed:2001995}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M60398; AAA25019.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07145.1; -; Genomic_DNA. DR PIR; B64529; B64529. DR RefSeq; NP_206874.1; NC_000915.1. DR RefSeq; WP_000921378.1; NC_018939.1. DR ProteinModelPortal; P25178; -. DR IntAct; P25178; 3. DR STRING; 85962.HP0074; -. DR PaxDb; P25178; -. DR PRIDE; P25178; -. DR EnsemblBacteria; AAD07145; AAD07145; HP_0074. DR GeneID; 899108; -. DR KEGG; heo:C694_00360; -. DR KEGG; hpy:HP0074; -. DR PATRIC; 20591353; VBIHelPyl33062_0077. DR eggNOG; ENOG410813J; Bacteria. DR eggNOG; COG0597; LUCA. DR KO; K03101; -. DR OMA; GFDFAIF; -. DR OrthoDB; EOG686NMZ; -. DR BioCyc; HPY:HP0074-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00161; LspA; 1. DR InterPro; IPR001872; Peptidase_A8. DR PANTHER; PTHR33695:SF1; PTHR33695:SF1; 1. DR Pfam; PF01252; Peptidase_A8; 1. DR PRINTS; PR00781; LIPOSIGPTASE. DR TIGRFAMs; TIGR00077; lspA; 1. DR PROSITE; PS00855; SPASE_II; 1. PE 3: Inferred from homology; KW Aspartyl protease; Cell membrane; Complete proteome; Hydrolase; KW Membrane; Protease; Reference proteome; Transmembrane; KW Transmembrane helix. FT CHAIN 1 157 Lipoprotein signal peptidase. FT /FTId=PRO_0000178784. FT TOPO_DOM 1 9 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 10 30 Helical. {ECO:0000255}. FT TOPO_DOM 31 35 Extracellular. {ECO:0000255}. FT TRANSMEM 36 56 Helical. {ECO:0000255}. FT TOPO_DOM 57 57 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 58 78 Helical. {ECO:0000255}. FT TOPO_DOM 79 121 Extracellular. {ECO:0000255}. FT TRANSMEM 122 142 Helical. {ECO:0000255}. FT TOPO_DOM 143 157 Cytoplasmic. {ECO:0000255}. FT ACT_SITE 105 105 {ECO:0000250}. FT ACT_SITE 131 131 {ECO:0000250}. FT CONFLICT 13 13 M -> I (in Ref. 1; AAA25019). FT {ECO:0000305}. FT CONFLICT 40 40 M -> V (in Ref. 1; AAA25019). FT {ECO:0000305}. FT CONFLICT 124 157 FAIFNFADVMIDVGVGVLLLKQFFFKQKQNKIKA -> LPF FT LTSLMS (in Ref. 1; AAA25019). FT {ECO:0000305}. SQ SEQUENCE 157 AA; 17998 MW; 738CF045ED01006C CRC64; MLKTTKKSLL VFMGVFFLIF GVDQAIKYAI LEGFRYESLM IDIVLVFNKG VAFSLLSFLE GGLKYLQILL ILGLFIFLMR QRELFKNHAI EFGMVFGAGV SNVLDRFVHG GVVDYVYYHY GFDFAIFNFA DVMIDVGVGV LLLKQFFFKQ KQNKIKA // ID MAP1_HELPY Reviewed; 253 AA. AC P56102; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Methionine aminopeptidase {ECO:0000255|HAMAP-Rule:MF_01974}; DE Short=MAP {ECO:0000255|HAMAP-Rule:MF_01974}; DE Short=MetAP {ECO:0000255|HAMAP-Rule:MF_01974}; DE EC=3.4.11.18 {ECO:0000255|HAMAP-Rule:MF_01974}; DE AltName: Full=Peptidase M {ECO:0000255|HAMAP-Rule:MF_01974}; GN Name=map {ECO:0000255|HAMAP-Rule:MF_01974}; OrderedLocusNames=HP_1299; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Removes the N-terminal methionine from nascent proteins. CC The N-terminal methionine is often cleaved when the second residue CC in the primary sequence is small and uncharged (Met-Ala-, Cys, CC Gly, Pro, Ser, Thr, or Val). Requires deformylation of the CC N(alpha)-formylated initiator methionine before it can be CC hydrolyzed. {ECO:0000255|HAMAP-Rule:MF_01974}. CC -!- CATALYTIC ACTIVITY: Release of N-terminal amino acids, CC preferentially methionine, from peptides and arylamides. CC {ECO:0000255|HAMAP-Rule:MF_01974}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01974}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01974}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01974}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01974}; CC Note=Binds 2 divalent metal cations per subunit. Has a high- CC affinity and a low affinity metal-binding site. The true nature of CC the physiological cofactor is under debate. The enzyme is active CC with cobalt, zinc, manganese or divalent iron ions. Most likely, CC methionine aminopeptidases function as mononuclear Fe(2+)- CC metalloproteases under physiological conditions, and the CC catalytically relevant metal-binding site has been assigned to the CC histidine-containing high-affinity site. {ECO:0000255|HAMAP- CC Rule:MF_01974}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01974}. CC -!- SIMILARITY: Belongs to the peptidase M24A family. Methionine CC aminopeptidase type 1 subfamily. {ECO:0000255|HAMAP- CC Rule:MF_01974}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08340.1; -; Genomic_DNA. DR PIR; C64682; C64682. DR RefSeq; NP_208091.1; NC_000915.1. DR RefSeq; WP_001018129.1; NC_018939.1. DR ProteinModelPortal; P56102; -. DR DIP; DIP-3487N; -. DR IntAct; P56102; 4. DR MINT; MINT-173189; -. DR STRING; 85962.HP1299; -. DR PaxDb; P56102; -. DR PRIDE; P56102; -. DR EnsemblBacteria; AAD08340; AAD08340; HP_1299. DR GeneID; 898824; -. DR KEGG; heo:C694_06710; -. DR KEGG; hpy:HP1299; -. DR PATRIC; 20593979; VBIHelPyl33062_1360. DR eggNOG; ENOG4105CA1; Bacteria. DR eggNOG; COG0024; LUCA. DR KO; K01265; -. DR OMA; PNSGPKI; -. DR OrthoDB; EOG6MWNDS; -. DR BioCyc; HPY:HP1299-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070006; F:metalloaminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070084; P:protein initiator methionine removal; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.230.10; -; 1. DR HAMAP; MF_01974; MetAP_1; 1. DR InterPro; IPR001714; Pept_M24_MAP. DR InterPro; IPR000994; Pept_M24_structural-domain. DR InterPro; IPR002467; Pept_M24A_MAP1. DR Pfam; PF00557; Peptidase_M24; 1. DR PRINTS; PR00599; MAPEPTIDASE. DR SUPFAM; SSF55920; SSF55920; 1. DR TIGRFAMs; TIGR00500; met_pdase_I; 1. DR PROSITE; PS00680; MAP_1; 1. PE 3: Inferred from homology; KW Aminopeptidase; Complete proteome; Hydrolase; Metal-binding; Protease; KW Reference proteome. FT CHAIN 1 253 Methionine aminopeptidase. FT /FTId=PRO_0000148941. FT METAL 95 95 Divalent metal cation 1. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT METAL 106 106 Divalent metal cation 1. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT METAL 106 106 Divalent metal cation 2; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT METAL 169 169 Divalent metal cation 2; catalytic; via FT tele nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_01974}. FT METAL 206 206 Divalent metal cation 2; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT METAL 237 237 Divalent metal cation 1. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT METAL 237 237 Divalent metal cation 2; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_01974}. FT BINDING 78 78 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01974}. FT BINDING 176 176 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01974}. SQ SEQUENCE 253 AA; 27577 MW; C09772EB85A6A8DA CRC64; MAISIKSPKE IKALRKAGEL TAQALALLER EVRPGVSLLE LDKMAEDFIK SSHARPAFKG LYGFPNSVCM SLNEVVIHGI PTDYVLQEGD IIGLDLGVEV DGYYGDSALT LPIGAISPQD EKLLACSKES LMHAINSIRV GMHFKELSQI LESTITERGF VPLKGFCGHG IGKKPHEEPE IPNYLEKGVK PNSGPKIKEG MVFCLEPMVC QKQGEPKILA DKWSVVSVDG LNTSHHEHTI AIVGNKAVIL TER // ID METN_HELPY Reviewed; 327 AA. AC O26096; O30552; DT 09-JAN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 116. DE RecName: Full=Methionine import ATP-binding protein MetN {ECO:0000255|HAMAP-Rule:MF_01719}; DE EC=3.6.3.- {ECO:0000255|HAMAP-Rule:MF_01719}; GN Name=metN {ECO:0000255|HAMAP-Rule:MF_01719}; GN OrderedLocusNames=HP_1576; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=9294450; RA Hendricks J.K., Mobley H.L.T.; RT "Helicobacter pylori ABC transporter: effect of allelic exchange RT mutagenesis on urease activity."; RL J. Bacteriol. 179:5892-5902(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the ABC transporter complex MetNIQ involved in CC methionine import. Responsible for energy coupling to the CC transport system. {ECO:0000255|HAMAP-Rule:MF_01719}. CC -!- SUBUNIT: The complex is composed of two ATP-binding proteins CC (MetN), two transmembrane proteins (MetI) and a solute-binding CC protein (MetQ). {ECO:0000255|HAMAP-Rule:MF_01719}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01719}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01719}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. Methionine CC importer (TC 3.A.1.24) family. {ECO:0000255|HAMAP-Rule:MF_01719}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. {ECO:0000255|HAMAP- CC Rule:MF_01719}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF010307; AAC45666.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08616.1; -; Genomic_DNA. DR PIR; H64716; H64716. DR RefSeq; NP_208367.1; NC_000915.1. DR RefSeq; WP_000259757.1; NC_018939.1. DR ProteinModelPortal; O26096; -. DR DIP; DIP-3488N; -. DR IntAct; O26096; 3. DR MINT; MINT-177552; -. DR STRING; 85962.HP1576; -. DR PaxDb; O26096; -. DR PRIDE; O26096; -. DR EnsemblBacteria; AAD08616; AAD08616; HP_1576. DR GeneID; 899715; -. DR KEGG; heo:C694_08165; -. DR KEGG; hpy:HP1576; -. DR PATRIC; 20594579; VBIHelPyl33062_1657. DR eggNOG; ENOG4108JEI; Bacteria. DR eggNOG; COG1135; LUCA. DR KO; K02071; -. DR OMA; FITHEIE; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP1576-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:UniProtKB-HAMAP. DR GO; GO:0015424; F:amino acid-transporting ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0015821; P:methionine transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR026253; ABC_MetN. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR017908; ABC_transprt_methionine_MetN_C. DR InterPro; IPR018449; NIL_domain. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR24220:SF549; PTHR24220:SF549; 1. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF09383; NIL; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00930; NIL; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. DR PROSITE; PS51264; METN; 1. PE 3: Inferred from homology; KW Amino-acid transport; ATP-binding; Cell inner membrane; Cell membrane; KW Complete proteome; Hydrolase; Membrane; Nucleotide-binding; KW Reference proteome; Transport. FT CHAIN 1 327 Methionine import ATP-binding protein FT MetN. FT /FTId=PRO_0000270310. FT DOMAIN 3 239 ABC transporter. {ECO:0000255|HAMAP- FT Rule:MF_01719}. FT NP_BIND 36 43 ATP. {ECO:0000255|HAMAP-Rule:MF_01719}. FT CONFLICT 96 96 N -> D (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 113 113 N -> T (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 132 132 M -> V (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 145 145 Q -> E (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 192 192 I -> V (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 198 198 E -> Q (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 247 247 D -> N (in Ref. 1; AAC45666). FT {ECO:0000305}. FT CONFLICT 279 279 V -> M (in Ref. 1; AAC45666). FT {ECO:0000305}. SQ SEQUENCE 327 AA; 36622 MW; 89F50E5A8D7D1E7B CRC64; MVVELKNIEK IYENGFHALK GVNLELKKGD ILGVIGYSGA GKSTLIRLIN CLERPSSGEV LVNGVNLLKL KPKELQKARQ KIGMIFQHFN LLSAKNVFEN VAFALEIARW EKNKIKSRVH ELLELVGLED KMHFYPKQLS GGQKQRVAIA RSLANCPDLL LCDEATSALD SKTTHSILTL LSGIQKKLDL SIVFITHEIE VVKELCNQMC VISSGEIVER GSVEEIFANP KHAVTKELLG IRNEHADKKS QDVYRIVFLG EHLDEPIISN LIKRFKIDVS IISGNIEELT TKDIGYLVVR FLGNTAETQR ALEYLNALGL QVEKLKD // ID MIAB_HELPY Reviewed; 437 AA. AC P56131; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; DE EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864}; DE AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000255|HAMAP-Rule:MF_01864}; DE AltName: Full=tRNA-i(6)A37 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01864}; GN Name=miaB {ECO:0000255|HAMAP-Rule:MF_01864}; GN OrderedLocusNames=HP_0269; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the methylthiolation of N6- CC (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- CC methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 CC in tRNAs that read codons beginning with uridine. CC {ECO:0000255|HAMAP-Rule:MF_01864}. CC -!- CATALYTIC ACTIVITY: N(6)-dimethylallyladenine(37) in tRNA + CC sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + reduced CC electron acceptor = 2-methylthio-N(6)-dimethylallyladenine(37) in CC tRNA + S-adenosyl-L-homocysteine + (sulfur carrier) + L-methionine CC + 5'-deoxyadenosine + electron acceptor. {ECO:0000255|HAMAP- CC Rule:MF_01864}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01864}; CC Note=Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01864}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01864}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01864}. CC -!- SIMILARITY: Belongs to the methylthiotransferase family. MiaB CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01864}. CC -!- SIMILARITY: Contains 1 MTTase N-terminal domain. CC {ECO:0000255|HAMAP-Rule:MF_01864}. CC -!- SIMILARITY: Contains 1 TRAM domain. {ECO:0000255|HAMAP- CC Rule:MF_01864}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07337.1; -; Genomic_DNA. DR PIR; E64553; E64553. DR RefSeq; NP_207067.1; NC_000915.1. DR RefSeq; WP_000870176.1; NC_000915.1. DR ProteinModelPortal; P56131; -. DR DIP; DIP-3713N; -. DR IntAct; P56131; 1. DR MINT; MINT-162796; -. DR STRING; 85962.HP0269; -. DR PaxDb; P56131; -. DR PRIDE; P56131; -. DR EnsemblBacteria; AAD07337; AAD07337; HP_0269. DR GeneID; 900119; -. DR KEGG; heo:C694_01360; -. DR KEGG; hpy:HP0269; -. DR PATRIC; 20591765; VBIHelPyl33062_0280. DR eggNOG; ENOG4105CIW; Bacteria. DR eggNOG; COG0621; LUCA. DR KO; K06168; -. DR OMA; IPMDLIL; -. DR OrthoDB; EOG6P5ZD8; -. DR BioCyc; HPY:HP0269-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006400; P:tRNA modification; IEA:UniProtKB-HAMAP. DR Gene3D; 3.80.30.20; -; 1. DR HAMAP; MF_01864; tRNA_metthiotr_MiaB; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR005839; Methylthiotransferase. DR InterPro; IPR020612; Methylthiotransferase_CS. DR InterPro; IPR013848; Methylthiotransferase_N. DR InterPro; IPR006463; MiaB_methiolase. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR InterPro; IPR002792; TRAM_dom. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF00919; UPF0004; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00089; TIGR00089; 1. DR PROSITE; PS51449; MTTASE_N; 1. DR PROSITE; PS01278; MTTASE_RADICAL; 1. DR PROSITE; PS50926; TRAM; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; KW Metal-binding; Reference proteome; S-adenosyl-L-methionine; KW Transferase; tRNA processing. FT CHAIN 1 437 tRNA-2-methylthio-N(6)- FT dimethylallyladenosine synthase. FT /FTId=PRO_0000141740. FT DOMAIN 1 115 MTTase N-terminal. {ECO:0000255|HAMAP- FT Rule:MF_01864}. FT DOMAIN 370 436 TRAM. {ECO:0000255|HAMAP-Rule:MF_01864}. FT METAL 10 10 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01864}. FT METAL 46 46 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01864}. FT METAL 78 78 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01864}. FT METAL 148 148 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01864}. FT METAL 152 152 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01864}. FT METAL 155 155 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01864}. SQ SEQUENCE 437 AA; 49423 MW; 3ECD466B6C1CEE3F CRC64; MKVYIETMGC AMNSRDSEHL LSELSKLDYK ETNDPKTADL ILINTCSVRE KPERKLFSEI GQFAKIKKPN AKIGVCGCTA SHMGADILKK APSVSFVLGA RNVSKISQVI HKEKAVEVAI DYDESAYAFE FFEKKAQIRS LLNISIGCDK KCAYCIVPHT RGKEISIPMD LILKEAEKLA NNGTKELMLL GQNVNNYGAR FSSEHAKVDF SDLLDKLSEI QGIERIRFTS PHPLHMNDGF LERFAKNPKV CKSIHMPLQS GSSAVLKMMR RGYSKEWFLN RVERLKALVP EVGISTDIIV GFPNESDKDF EDTMEVLEKV RFDTLYSFIY SPRPFTEAGA WKERVPLEVS SSRLERLQNR HKEILEEKAK LEVGKTHVVL VENRREMDNQ IVGFEGRSDT GKFIEVTCKE KRNPGELVKV EIISHSKGRL MAATKGN // ID MINC_HELPY Reviewed; 195 AA. AC O25693; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 13-APR-2016, entry version 87. DE RecName: Full=Probable septum site-determining protein MinC; GN Name=minC; OrderedLocusNames=HP_1053; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell division inhibitor that blocks the formation of CC polar Z ring septums. Rapidly oscillates between the poles of the CC cell to destabilize FtsZ filaments that have formed before they CC mature into polar Z rings. Prevents FtsZ polymerization (By CC similarity). {ECO:0000250}. CC -!- SUBUNIT: Interacts with MinD and FtsZ. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the MinC family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08105.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08105.1; ALT_INIT; Genomic_DNA. DR PIR; E64651; E64651. DR RefSeq; NP_207844.1; NC_000915.1. DR RefSeq; WP_000921052.1; NC_018939.1. DR ProteinModelPortal; O25693; -. DR IntAct; O25693; 5. DR STRING; 85962.HP1053; -. DR PaxDb; O25693; -. DR EnsemblBacteria; AAD08105; AAD08105; HP_1053. DR GeneID; 899588; -. DR KEGG; heo:C694_05445; -. DR KEGG; hpy:HP1053; -. DR PATRIC; 20593443; VBIHelPyl33062_1102. DR eggNOG; COG0850; LUCA. DR KO; K03610; -. DR OMA; AVMEFLE; -. DR OrthoDB; EOG6G20KX; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000917; P:barrier septum assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0000902; P:cell morphogenesis; IEA:InterPro. DR GO; GO:0051726; P:regulation of cell cycle; IEA:UniProtKB-HAMAP. DR Gene3D; 2.160.20.70; -; 1. DR HAMAP; MF_00267; MinC; 1. DR InterPro; IPR016098; CAP/MinC_C. DR InterPro; IPR013033; MinC. DR InterPro; IPR005526; Septum_form_inhib_MinC_C. DR Pfam; PF03775; MinC_C; 1. DR SUPFAM; SSF63848; SSF63848; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Complete proteome; Reference proteome; KW Septation. FT CHAIN 1 195 Probable septum site-determining protein FT MinC. FT /FTId=PRO_0000189038. SQ SEQUENCE 195 AA; 22372 MW; 5C2DE7235B33C77B CRC64; MLKTNQKNVH AFEIEKQEPE AVIGFLEKNH ALLQYFLIIF KYDIESEVKA VLRKHQLLFL ETNRVLNGRH IKTMPLKDET DHPKPNHSKT EPKTTIYERH IRSGEEIYST NHLIFLGNIH NGAKIISEGC VSVYGVCEGA IVCFGECLIL KEVKSAQIVF QNKILSLKEV EPLLVNKNIK IITKNDDILD IKEVL // ID METB_HELPY Reviewed; 380 AA. AC P56069; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Cystathionine gamma-synthase; DE Short=CGS; DE EC=2.5.1.48; DE AltName: Full=O-succinylhomoserine (thiol)-lyase; GN Name=metB; OrderedLocusNames=HP_0106; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the formation of L-cystathionine from O- CC succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma- CC replacement reaction. In the absence of thiol, catalyzes gamma- CC elimination to form 2-oxobutanoate, succinate and ammonia (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: O(4)-succinyl-L-homoserine + L-cysteine = L- CC cystathionine + succinate. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC Note=Binds 1 pyridoxal phosphate per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the trans-sulfuration enzymes family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07176.1; -; Genomic_DNA. DR PIR; B64533; B64533. DR RefSeq; NP_206906.1; NC_000915.1. DR RefSeq; WP_001242837.1; NC_018939.1. DR PDB; 4L0O; X-ray; 2.76 A; A/C/E/G/H/K/M/O=1-380. DR PDBsum; 4L0O; -. DR ProteinModelPortal; P56069; -. DR IntAct; P56069; 1. DR STRING; 85962.HP0106; -. DR PaxDb; P56069; -. DR PRIDE; P56069; -. DR EnsemblBacteria; AAD07176; AAD07176; HP_0106. DR GeneID; 898970; -. DR KEGG; heo:C694_00525; -. DR KEGG; hpy:HP0106; -. DR PATRIC; 20591427; VBIHelPyl33062_0113. DR eggNOG; ENOG4105C28; Bacteria. DR eggNOG; COG0626; LUCA. DR KO; K01760; -. DR OMA; THACIPK; -. DR OrthoDB; EOG67DPN3; -. DR BioCyc; HPY:HP0106-MONOMER; -. DR BioCyc; RETL1328306-WGS:GSTH-4654-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003962; F:cystathionine gamma-synthase activity; IEA:UniProtKB-EC. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000277; Cys/Met-Metab_PyrdxlP-dep_enz. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11808; PTHR11808; 1. DR Pfam; PF01053; Cys_Met_Meta_PP; 1. DR PIRSF; PIRSF001434; CGS; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00868; CYS_MET_METAB_PP; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Methionine biosynthesis; Pyridoxal phosphate; Reference proteome; KW Transferase. FT CHAIN 1 380 Cystathionine gamma-synthase. FT /FTId=PRO_0000114758. FT MOD_RES 195 195 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. FT HELIX 3 9 {ECO:0000244|PDB:4L0O}. FT STRAND 10 12 {ECO:0000244|PDB:4L0O}. FT TURN 16 18 {ECO:0000244|PDB:4L0O}. FT TURN 45 47 {ECO:0000244|PDB:4L0O}. FT HELIX 50 63 {ECO:0000244|PDB:4L0O}. FT STRAND 66 73 {ECO:0000244|PDB:4L0O}. FT HELIX 74 82 {ECO:0000244|PDB:4L0O}. FT STRAND 90 94 {ECO:0000244|PDB:4L0O}. FT HELIX 99 107 {ECO:0000244|PDB:4L0O}. FT HELIX 110 112 {ECO:0000244|PDB:4L0O}. FT STRAND 115 119 {ECO:0000244|PDB:4L0O}. FT HELIX 124 130 {ECO:0000244|PDB:4L0O}. FT STRAND 135 143 {ECO:0000244|PDB:4L0O}. FT TURN 145 147 {ECO:0000244|PDB:4L0O}. FT HELIX 153 161 {ECO:0000244|PDB:4L0O}. FT TURN 162 164 {ECO:0000244|PDB:4L0O}. FT STRAND 166 170 {ECO:0000244|PDB:4L0O}. FT STRAND 172 174 {ECO:0000244|PDB:4L0O}. FT TURN 176 178 {ECO:0000244|PDB:4L0O}. FT HELIX 181 184 {ECO:0000244|PDB:4L0O}. FT STRAND 187 192 {ECO:0000244|PDB:4L0O}. FT TURN 193 198 {ECO:0000244|PDB:4L0O}. FT STRAND 206 211 {ECO:0000244|PDB:4L0O}. FT HELIX 213 226 {ECO:0000244|PDB:4L0O}. FT HELIX 232 242 {ECO:0000244|PDB:4L0O}. FT HELIX 245 264 {ECO:0000244|PDB:4L0O}. FT STRAND 267 273 {ECO:0000244|PDB:4L0O}. FT HELIX 283 289 {ECO:0000244|PDB:4L0O}. FT STRAND 295 303 {ECO:0000244|PDB:4L0O}. FT HELIX 306 312 {ECO:0000244|PDB:4L0O}. FT STRAND 315 319 {ECO:0000244|PDB:4L0O}. FT STRAND 324 327 {ECO:0000244|PDB:4L0O}. FT STRAND 329 331 {ECO:0000244|PDB:4L0O}. FT TURN 333 340 {ECO:0000244|PDB:4L0O}. FT HELIX 343 348 {ECO:0000244|PDB:4L0O}. FT STRAND 355 359 {ECO:0000244|PDB:4L0O}. FT HELIX 365 377 {ECO:0000244|PDB:4L0O}. SQ SEQUENCE 380 AA; 41118 MW; 58A85489B05257ED CRC64; MRMQTKLIHG GISEDATTGA VSVPIYQTST YRQDAIGRHK GYEYSRSGNP TRFALEELIA DLEGGVKGFA FASGLAGIHA VFSLLQSGDH VLLGDDVYGG TFRLFNQVLV KNGLSCTIID TSDISQIKKA IKPNTKALYL ETPSNPLLKI TDLAQCASVA KDHGLLTIVD NTFATPYYQN PLLLGADIVA HSGTKYLGGH SDVVAGLVTT NNEALAQEIA FFQNAIGGVL GPQDSWLLQR GIKTLGLRME AHQKNALCVA EFLEKHPKVE RVYYPGLPTH PNYELAKKQM RGFSGMLSFT LKNDSEAVAF VESLKLFILG ESLGGVESLV GIPAFMTHAC IPKTQREAAG IRDGLVRLSV GIEHEQDLLE DLEQAFAKIG // ID MIAA_HELPY Reviewed; 311 AA. AC O25961; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-MAY-2016, entry version 93. DE RecName: Full=tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; DE EC=2.5.1.75 {ECO:0000255|HAMAP-Rule:MF_00185}; DE AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; DE Short=DMAPP:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; DE Short=DMATase {ECO:0000255|HAMAP-Rule:MF_00185}; DE AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; DE Short=IPP transferase {ECO:0000255|HAMAP-Rule:MF_00185}; DE Short=IPPT {ECO:0000255|HAMAP-Rule:MF_00185}; DE Short=IPTase {ECO:0000255|HAMAP-Rule:MF_00185}; GN Name=miaA {ECO:0000255|HAMAP-Rule:MF_00185}; GN OrderedLocusNames=HP_1415; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the transfer of a dimethylallyl group onto the CC adenine at position 37 in tRNAs that read codons beginning with CC uridine, leading to the formation of N6-(dimethylallyl)adenosine CC (i(6)A). {ECO:0000255|HAMAP-Rule:MF_00185}. CC -!- CATALYTIC ACTIVITY: Dimethylallyl diphosphate + adenine(37) in CC tRNA = diphosphate + N(6)-dimethylallyladenine(37) in tRNA. CC {ECO:0000255|HAMAP-Rule:MF_00185}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00185}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00185}. CC -!- SIMILARITY: Belongs to the IPP transferase family. CC {ECO:0000255|HAMAP-Rule:MF_00185}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08458.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08458.1; ALT_INIT; Genomic_DNA. DR PIR; G64696; G64696. DR RefSeq; NP_208206.1; NC_000915.1. DR RefSeq; WP_010875625.1; NC_000915.1. DR ProteinModelPortal; O25961; -. DR STRING; 85962.HP1415; -. DR PaxDb; O25961; -. DR DNASU; 899879; -. DR EnsemblBacteria; AAD08458; AAD08458; HP_1415. DR GeneID; 899879; -. DR KEGG; hpy:HP1415; -. DR PATRIC; 20594227; VBIHelPyl33062_1483. DR eggNOG; ENOG4105DKX; Bacteria. DR eggNOG; COG0324; LUCA. DR KO; K00791; -. DR OMA; QFNNLYM; -. DR OrthoDB; EOG661HB3; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0052381; F:tRNA dimethylallyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00185; IPP_trans; 1. DR InterPro; IPR018022; IPP_trans. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01715; IPPT; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00174; miaA; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Magnesium; Nucleotide-binding; KW Reference proteome; Transferase; tRNA processing. FT CHAIN 1 311 tRNA dimethylallyltransferase. FT /FTId=PRO_0000163925. FT NP_BIND 19 26 ATP. {ECO:0000255|HAMAP-Rule:MF_00185}. FT REGION 21 26 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00185}. FT REGION 44 47 Interaction with substrate tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00185}. FT SITE 108 108 Interaction with substrate tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00185}. SQ SEQUENCE 311 AA; 35037 MW; D67531E7A1629420 CRC64; MIKEGFLIKT PKKLIALLGP SGSGKSALSI ELAQELDAEI FSLDSLSIYK DINIASAKPS LKERKNIKHY ALDHLNIDEK NNAPLFKTLL EDAMRVSSKE ILLIVGGSSF YLKSILEGLS RMPKLSGEEV VKIEREIATL SNPYIFLKSI DPNMAFKIHP NDTYRTHKAL EIFYATCTPP SEYFKANPKK PFEHAISLFA LSIEKSALHN NIKRRTKNML HSGLVEEIKA LYTQYPKDSQ PFKAIGVKES VLFLEKRLTL KELEEAITSN TMKLAKRQNT FNKTQFNNLY VGSAEEVRHA ILKHSKSGIK G // ID MINE_HELPY Reviewed; 77 AA. AC O25099; DT 11-JAN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 80. DE RecName: Full=Cell division topological specificity factor; GN Name=minE; OrderedLocusNames=HP_0332; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Prevents the cell division inhibition by proteins MinC CC and MinD at internal division sites while permitting inhibition at CC polar sites. This ensures cell division at the proper site by CC restricting the formation of a division septum at the midpoint of CC the long axis of the cell (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the MinE family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07401.1; -; Genomic_DNA. DR PIR; D64561; D64561. DR RefSeq; NP_207130.1; NC_000915.1. DR RefSeq; WP_000051415.1; NC_018939.1. DR PDB; 3KU7; X-ray; 2.80 A; A/B=1-77. DR PDB; 3MCD; X-ray; 3.20 A; A/B=1-77. DR PDBsum; 3KU7; -. DR PDBsum; 3MCD; -. DR DIP; DIP-3672N; -. DR IntAct; O25099; 2. DR MINT; MINT-161035; -. DR STRING; 85962.HP0332; -. DR PaxDb; O25099; -. DR PRIDE; O25099; -. DR EnsemblBacteria; AAD07401; AAD07401; HP_0332. DR GeneID; 899209; -. DR KEGG; heo:C694_01680; -. DR KEGG; hpy:HP0332; -. DR PATRIC; 20591899; VBIHelPyl33062_0346. DR eggNOG; ENOG41084TB; Bacteria. DR eggNOG; COG0851; LUCA. DR KO; K03608; -. DR OMA; IMLSHER; -. DR OrthoDB; EOG6HMXJM; -. DR BioCyc; HPY:HP0332-MONOMER; -. DR EvolutionaryTrace; O25099; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0032955; P:regulation of barrier septum assembly; IEA:InterPro. DR Gene3D; 3.30.1070.10; -; 1. DR HAMAP; MF_00262; MinE; 1. DR InterPro; IPR005527; MinE. DR Pfam; PF03776; MinE; 1. DR SUPFAM; SSF55229; SSF55229; 1. DR TIGRFAMs; TIGR01215; minE; 1. PE 1: Evidence at protein level; KW 3D-structure; Cell cycle; Cell division; Complete proteome; KW Reference proteome. FT CHAIN 1 77 Cell division topological specificity FT factor. FT /FTId=PRO_0000205877. FT STRAND 15 17 {ECO:0000244|PDB:3KU7}. FT STRAND 19 29 {ECO:0000244|PDB:3KU7}. FT HELIX 35 50 {ECO:0000244|PDB:3KU7}. FT STRAND 54 58 {ECO:0000244|PDB:3KU7}. FT STRAND 66 74 {ECO:0000244|PDB:3KU7}. SQ SEQUENCE 77 AA; 8920 MW; 2440A6E9A42651A7 CRC64; MSLFDFFKNK GSAATATDRL KLILAKERTL NLPYMEEMRK EIIAVIQKYT KSSDIHFKTL DSNQSVETIE VEIILPR // ID METK_HELPY Reviewed; 385 AA. AC P56460; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 108. DE RecName: Full=S-adenosylmethionine synthase; DE Short=AdoMet synthase; DE EC=2.5.1.6; DE AltName: Full=MAT; DE AltName: Full=Methionine adenosyltransferase; GN Name=metK; OrderedLocusNames=HP_0197; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the formation of S-adenosylmethionine from CC methionine and ATP. The overall synthetic reaction is composed of CC two sequential steps, AdoMet formation and the subsequent CC tripolyphosphate hydrolysis which occurs prior to release of CC AdoMet from the enzyme (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + L-methionine + H(2)O = phosphate + CC diphosphate + S-adenosyl-L-methionine. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence={ECO:0000250}; CC Note=Binds 2 divalent ions per subunit. Magnesium or cobalt. CC {ECO:0000250}; CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; Evidence={ECO:0000250}; CC Note=Binds 1 potassium ion per subunit. {ECO:0000250}; CC -!- PATHWAY: Amino-acid biosynthesis; S-adenosyl-L-methionine CC biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1. CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the AdoMet synthase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07267.1; -; Genomic_DNA. DR PIR; E64544; E64544. DR RefSeq; NP_206996.1; NC_000915.1. DR RefSeq; WP_000655178.1; NC_018939.1. DR ProteinModelPortal; P56460; -. DR SMR; P56460; 6-380. DR DIP; DIP-3226N; -. DR IntAct; P56460; 6. DR MINT; MINT-177108; -. DR STRING; 85962.HP0197; -. DR PaxDb; P56460; -. DR PRIDE; P56460; -. DR EnsemblBacteria; AAD07267; AAD07267; HP_0197. DR GeneID; 898926; -. DR KEGG; heo:C694_00980; -. DR KEGG; hpy:HP0197; -. DR PATRIC; 20591615; VBIHelPyl33062_0207. DR eggNOG; ENOG4105CPH; Bacteria. DR eggNOG; COG0192; LUCA. DR KO; K00789; -. DR OMA; DNFLAFD; -. DR OrthoDB; EOG68WR6M; -. DR BioCyc; HPY:HP0197-MONOMER; -. DR UniPathway; UPA00315; UER00080. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004478; F:methionine adenosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006556; P:S-adenosylmethionine biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00086; S_AdoMet_synth1; 1. DR InterPro; IPR022631; ADOMET_SYNTHASE_CS. DR InterPro; IPR022630; S-AdoMet_synt_C. DR InterPro; IPR022629; S-AdoMet_synt_central. DR InterPro; IPR022628; S-AdoMet_synt_N. DR InterPro; IPR002133; S-AdoMet_synthetase. DR InterPro; IPR022636; S-AdoMet_synthetase_sfam. DR PANTHER; PTHR11964; PTHR11964; 1. DR Pfam; PF02773; S-AdoMet_synt_C; 1. DR Pfam; PF02772; S-AdoMet_synt_M; 1. DR Pfam; PF00438; S-AdoMet_synt_N; 1. DR PIRSF; PIRSF000497; MAT; 1. DR SUPFAM; SSF55973; SSF55973; 3. DR TIGRFAMs; TIGR01034; metK; 1. DR PROSITE; PS00376; ADOMET_SYNTHASE_1; 1. DR PROSITE; PS00377; ADOMET_SYNTHASE_2; 1. PE 3: Inferred from homology; KW ATP-binding; Cobalt; Complete proteome; Cytoplasm; Magnesium; KW Metal-binding; Nucleotide-binding; One-carbon metabolism; Potassium; KW Reference proteome; Transferase. FT CHAIN 1 385 S-adenosylmethionine synthase. FT /FTId=PRO_0000174531. FT NP_BIND 260 267 ATP. {ECO:0000255}. FT METAL 18 18 Magnesium. {ECO:0000250}. FT METAL 44 44 Potassium. {ECO:0000250}. FT METAL 264 264 Potassium. {ECO:0000250}. FT METAL 272 272 Magnesium. {ECO:0000250}. SQ SEQUENCE 385 AA; 42362 MW; B1262A82075ADB5A CRC64; MKDSFLFTSE SVTEGHPDKM ADQISDAVLD YIIERDQKAK VACETLVSNG FCMITGELKT SVYAPMQEIA REVVKKIGYT DALYGFDYRS AAVLNGVGEQ SPDINQGVDR EDGEIGAGDQ GLMFGYACKE TETLMPLPIH LAHQLTFALA QKRKDNTLPF LRPDGKSQVS VRYENNKPVS IDTIVISTQH SPEVSQKHLK EAVIEEIVYK VLSKEYLHDN IKFFVNPTGK FVIGGPQGDA GLTGRKIIVD TYGGSCPHGG GAFSGKDPSK VDRSAAYAAR YVAKNLVASG VCDKATVQLA YAIGVIEPVS IYVNTHNTSK YSSAELEKCV KSVFKLTPKG IIESLDLLRP IYSLTSAYGH FGRELEEFTW EKTNKAEEIK AFFKR // ID MFD_HELPY Reviewed; 999 AA. AC O26066; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969}; DE Short=TRCF {ECO:0000255|HAMAP-Rule:MF_00969}; DE EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_00969}; GN Name=mfd {ECO:0000255|HAMAP-Rule:MF_00969}; OrderedLocusNames=HP_1541; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Couples transcription and DNA repair by recognizing RNA CC polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent CC release of RNAP and its truncated transcript from the DNA, and CC recruitment of nucleotide excision repair machinery to the damaged CC site. {ECO:0000255|HAMAP-Rule:MF_00969}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00969}. CC -!- SIMILARITY: In the N-terminal section; belongs to the UvrB family. CC {ECO:0000255|HAMAP-Rule:MF_00969}. CC -!- SIMILARITY: In the C-terminal section; belongs to the helicase CC family. RecG subfamily. {ECO:0000255|HAMAP-Rule:MF_00969}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000255|HAMAP-Rule:MF_00969}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000255|HAMAP-Rule:MF_00969}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08581.1; -; Genomic_DNA. DR PIR; E64712; E64712. DR RefSeq; NP_208332.1; NC_000915.1. DR RefSeq; WP_000616334.1; NC_018939.1. DR ProteinModelPortal; O26066; -. DR DIP; DIP-3189N; -. DR IntAct; O26066; 8. DR MINT; MINT-166853; -. DR STRING; 85962.HP1541; -. DR PaxDb; O26066; -. DR PRIDE; O26066; -. DR EnsemblBacteria; AAD08581; AAD08581; HP_1541. DR GeneID; 899750; -. DR KEGG; heo:C694_07985; -. DR KEGG; hpy:HP1541; -. DR PATRIC; 20594505; VBIHelPyl33062_1620. DR eggNOG; ENOG4108JA2; Bacteria. DR eggNOG; COG1197; LUCA. DR KO; K03723; -. DR OMA; KTEVAMH; -. DR OrthoDB; EOG6FNHKW; -. DR BioCyc; HPY:HP1541-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR GO; GO:0000716; P:transcription-coupled nucleotide-excision repair, DNA damage recognition; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00969; TRCF; 1. DR InterPro; IPR003711; CarD-like/TRCF_domain. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR004576; Mfd. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005118; TRCF_C. DR Pfam; PF02559; CarD_CdnL_TRCF; 1. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF03461; TRCF; 1. DR SMART; SM01058; CarD_TRCF; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SMART; SM00982; TRCF; 1. DR SUPFAM; SSF141259; SSF141259; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00580; mfd; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA repair; KW DNA-binding; Helicase; Hydrolase; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 999 Transcription-repair-coupling factor. FT /FTId=PRO_0000102168. FT DOMAIN 499 656 Helicase ATP-binding. {ECO:0000255|HAMAP- FT Rule:MF_00969}. FT DOMAIN 677 833 Helicase C-terminal. {ECO:0000255|HAMAP- FT Rule:MF_00969}. FT NP_BIND 512 519 ATP. {ECO:0000255|HAMAP-Rule:MF_00969}. FT MOTIF 609 612 DEEH box. SQ SEQUENCE 999 AA; 113090 MW; EE550EFB2A2946E5 CRC64; MIQSSLYRAL NKGFDYQILA CKDFKESELA KEVISYFKPN TKAILFPEFR AKKNDDLRSF FEEFLQLLGG LREFYQALEN KQETIIIAPI SALLHPLPKK ELLESFKITL LEKYNLKDLK DKLFYYGYEI LDLVEVEGEA SFRGDIVDIY APNSKAYRLS FFDTECESIK EFDPITQMSL KEDLLEIEIP PTLFSLDESS YKDLKTKVEQ SPLNSFSKDL TSFGLWFLGE KAQDLLIVYK SIISPRALEE IQELASLNEL DCERFKFLKV LENAQGYEDL EIHAHALEGF IALHSNHKIT LLAPNKTILD NAISALDAGN MECVIAPFVL NFKTPDGIFI SLNSFERKKK RQKSKLALNE LNPGEWVVHD DYGVGVFSQL VQHSVLGSKR DFLEIAYLGE DKLLLPVENL HLIARYVAQS DSVPAKDRLG KGSFLKLKAK VRTKLLEIAS KIIELAAERN LILGKKMDVH LAELEVFKSH AGFEYTSDQE KAIAEISKDL SSHRVMDRLL SGDVGFGKTE VAMHAIFCAF LNGFQSALVV PTTLLAHQHF ETLRARFENF GVKVARLDRY ASEKNKLLKA VELGQVDALI GTHAILGAKF KNLGLVVVDE EHKFGVKQKE ALKELSKSVH FLSMSATPIP RTLNMALSQI KGISSLKTPP TDRKPSRTFL KEKNDELLKE IIYRELRRNG QIFYIHNHIA SILKVKTKLE DLIPKLKIAI LHSQINANES EEIMLEFAKG NYQVLLCTSI VESGIHLPNA NTIIIDNAQN FGLADLHQLR GRVGRGKKEG FCYFLIEDQK SLNEQALKRL LALEKNSYLG SGESVAYHDL EIRGGGNLLG QDQSGHIKNI GYALYTRMLE DAIYELSGGK KRLEKSVEIQ LGVSAFLNPE LIASDSLRLD LYRRLSLCEN TDEVGQIHEE IEDRFGKIDD LSAQFLQIIT LKILANQLGI IKLSNFNQNI TITYSDEKKE SLKAPSKDDN DILETLLKHL RAQISLKRR // ID MIND_HELPY Reviewed; 268 AA. AC O25098; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Septum site-determining protein MinD; DE AltName: Full=Cell division inhibitor MinD; GN Name=minD; OrderedLocusNames=HP_0331; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: ATPase required for the correct placement of the CC division site. Cell division inhibitors MinC and MinD act in CC concert to form an inhibitor capable of blocking formation of the CC polar Z ring septums. Rapidly oscillates between the poles of the CC cell to destabilize FtsZ filaments that have formed before they CC mature into polar Z rings (By similarity). {ECO:0000250}. CC -!- SUBUNIT: Interacts with MinC and FtsZ. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Peripheral CC membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ParA family. MinD subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07400.1; -; Genomic_DNA. DR PIR; C64561; C64561. DR RefSeq; NP_207129.1; NC_000915.1. DR RefSeq; WP_001019069.1; NC_018939.1. DR ProteinModelPortal; O25098; -. DR DIP; DIP-3247N; -. DR IntAct; O25098; 4. DR MINT; MINT-161558; -. DR STRING; 85962.HP0331; -. DR PaxDb; O25098; -. DR PRIDE; O25098; -. DR EnsemblBacteria; AAD07400; AAD07400; HP_0331. DR GeneID; 900172; -. DR KEGG; heo:C694_01675; -. DR KEGG; hpy:HP0331; -. DR PATRIC; 20591897; VBIHelPyl33062_0345. DR eggNOG; ENOG4107QMS; Bacteria. DR eggNOG; COG2894; LUCA. DR KO; K03609; -. DR OMA; CESAKAY; -. DR OrthoDB; EOG6NPMB6; -. DR BioCyc; HPY:HP0331-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0000918; P:barrier septum site selection; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom. DR InterPro; IPR025501; MinD. DR InterPro; IPR010223; MinD_bac-type. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01656; CbiA; 1. DR PIRSF; PIRSF003092; MinD; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01968; minD_bact; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Cell membrane; KW Complete proteome; Membrane; Nucleotide-binding; Reference proteome; KW Septation. FT CHAIN 1 268 Septum site-determining protein MinD. FT /FTId=PRO_0000201971. FT NP_BIND 10 17 ATP. {ECO:0000255}. SQ SEQUENCE 268 AA; 29294 MW; 9E14766E8D309476 CRC64; MAIVVTITSG KGGVGKSTTT ANLAIGLAES GKKVVAVDFD IGLRNLDMIL GLENRIVYDV VDVMEKNCNL SQALITDKKT KNLSFLAASQ SKDKNILDKE KVAILINALR ADFDYILIDS PAGIESGFEH AILHADMALV VVTPEVSSLR DSDRVVGIID AKSNRAKKGM EVHKHLIINR LKPELVANGE MISIEEVLKI LCLPLIGIIP EDHHIISATN KGEPVIRTDC ESAKAYQRIT RRILGEEVEY VEFKAKRGFF SALKGIFS // ID MNMA_HELPY Reviewed; 342 AA. AC O25893; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 02-SEP-2008, sequence version 2. DT 16-MAR-2016, entry version 97. DE RecName: Full=tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; DE EC=2.8.1.13 {ECO:0000255|HAMAP-Rule:MF_00144}; GN Name=mnmA {ECO:0000255|HAMAP-Rule:MF_00144}; Synonyms=trmU; GN OrderedLocusNames=HP_1335; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the 2-thiolation of uridine at the wobble CC position (U34) of tRNA, leading to the formation of s(2)U34. CC {ECO:0000255|HAMAP-Rule:MF_00144}. CC -!- CATALYTIC ACTIVITY: A [protein]-S-sulfanyl-L-cysteine + CC uridine(34) in tRNA + ATP + reduced acceptor = a [protein]-L- CC cysteine + 2-thiouridine(34) in tRNA + AMP + diphosphate + CC acceptor. {ECO:0000255|HAMAP-Rule:MF_00144}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00144}. CC -!- SIMILARITY: Belongs to the MnmA/TRMU family. {ECO:0000255|HAMAP- CC Rule:MF_00144}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08378.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08378.1; ALT_INIT; Genomic_DNA. DR PIR; G64686; G64686. DR RefSeq; NP_208127.2; NC_000915.1. DR RefSeq; WP_000686217.1; NC_018939.1. DR ProteinModelPortal; O25893; -. DR STRING; 85962.HP1335; -. DR PaxDb; O25893; -. DR PRIDE; O25893; -. DR DNASU; 899968; -. DR EnsemblBacteria; AAD08378; AAD08378; HP_1335. DR GeneID; 899968; -. DR KEGG; heo:C694_06890; -. DR KEGG; hpy:HP1335; -. DR PATRIC; 20594053; VBIHelPyl33062_1397. DR eggNOG; ENOG4105CCJ; Bacteria. DR eggNOG; COG0482; LUCA. DR KO; K00566; -. DR OMA; CCTVEDS; -. DR OrthoDB; EOG6RZB5H; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016783; F:sulfurtransferase activity; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0006400; P:tRNA modification; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.280; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00144; tRNA_thiouridyl_MnmA; 1. DR InterPro; IPR023382; Adenine_a_hdrlase_dom. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR004506; tRNA-specific_2-thiouridylase. DR PANTHER; PTHR11933; PTHR11933; 1. DR TIGRFAMs; TIGR00420; trmU; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Disulfide bond; KW Nucleotide-binding; Reference proteome; RNA-binding; Transferase; KW tRNA processing; tRNA-binding. FT CHAIN 1 342 tRNA-specific 2-thiouridylase MnmA. FT /FTId=PRO_0000121637. FT NP_BIND 6 13 ATP. {ECO:0000255|HAMAP-Rule:MF_00144}. FT REGION 138 140 Interaction with tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT REGION 293 294 Interaction with tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT ACT_SITE 92 92 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_00144}. FT ACT_SITE 191 191 Cysteine persulfide intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT BINDING 32 32 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00144}. FT BINDING 116 116 ATP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT SITE 117 117 Interaction with tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT SITE 325 325 Interaction with tRNA. FT {ECO:0000255|HAMAP-Rule:MF_00144}. FT DISULFID 92 191 Alternate. {ECO:0000255|HAMAP- FT Rule:MF_00144}. SQ SEQUENCE 342 AA; 38247 MW; B03C833807BD06B9 CRC64; MKIAVLLSGG VDSSYSAYSL KEQGHELVGI YLKLHASEKK HDLYIKNAQK ACEFLGIPLE VLDFQKDFKS AVYDEFINAY EEGQTPNPCA LCNPLMKFGL ALDHALKLGC EKIATGHYAR VKEIDKISYI QEALDKTKDQ SYFLYALEHE VIAKLVFPLG DLLKKDIKPL ALNAMPFLGT LETYKESQEI CFVEKSYIDT LKKHVEVEKE GVVKNLQGEV IGTHKGYMQY TIGKRKGFSI KGALEPHFVV GIDAKKNELV VGKKEDLATH SLKAKNKSLM KDFKDGEYFI KARYRSVPAK AHVSLKDEVI EVGFKEPFYG VAKGQALVVY KDDILLGGGV IV // ID MNME_HELPY Reviewed; 461 AA. AC O25991; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 101. DE RecName: Full=tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; DE EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379}; GN Name=mnmE {ECO:0000255|HAMAP-Rule:MF_00379}; GN Synonyms=thdF {ECO:0000255|HAMAP-Rule:MF_00379}, GN trmE {ECO:0000255|HAMAP-Rule:MF_00379}; OrderedLocusNames=HP_1452; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Exhibits a very high intrinsic GTPase hydrolysis rate. CC Involved in the addition of a carboxymethylaminomethyl (cmnm) CC group at the wobble position (U34) of certain tRNAs, forming tRNA- CC cmnm(5)s(2)U34. {ECO:0000255|HAMAP-Rule:MF_00379}. CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00379}; CC Note=Binds 1 potassium ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00379}; CC -!- SUBUNIT: Homodimer. Heterotetramer of two MnmE and two MnmG CC subunits. {ECO:0000255|HAMAP-Rule:MF_00379}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00379}. CC -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- CC like GTPase superfamily. TrmE GTPase family. {ECO:0000255|HAMAP- CC Rule:MF_00379}. CC -!- SIMILARITY: Contains 1 TrmE-type G (guanine nucleotide-binding) CC domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08492.1; -; Genomic_DNA. DR PIR; D64701; D64701. DR RefSeq; NP_208243.1; NC_000915.1. DR RefSeq; WP_000799508.1; NC_000915.1. DR ProteinModelPortal; O25991; -. DR DIP; DIP-3365N; -. DR IntAct; O25991; 3. DR MINT; MINT-166579; -. DR STRING; 85962.HP1452; -. DR PaxDb; O25991; -. DR PRIDE; O25991; -. DR EnsemblBacteria; AAD08492; AAD08492; HP_1452. DR GeneID; 899841; -. DR KEGG; hpy:HP1452; -. DR PATRIC; 20594311; VBIHelPyl33062_1524. DR eggNOG; ENOG4105C1H; Bacteria. DR eggNOG; COG0486; LUCA. DR KO; K03650; -. DR OMA; FTPRYAY; -. DR OrthoDB; EOG6DC6K1; -. DR BioCyc; HPY:HP1452-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006400; P:tRNA modification; IEA:UniProtKB-HAMAP. DR Gene3D; 1.20.120.430; -; 3. DR Gene3D; 3.30.1360.120; -; 1. DR Gene3D; 3.40.50.300; -; 3. DR HAMAP; MF_00379; GTPase_MnmE; 1. DR InterPro; IPR031168; G_TrmE. DR InterPro; IPR018948; GTP-bd_TrmE_N. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR004520; GTPase_MnmE. DR InterPro; IPR027368; MnmE_dom2. DR InterPro; IPR025867; MnmE_helical. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR027266; TrmE/GcvT_dom1. DR Pfam; PF01926; MMR_HSR1; 1. DR Pfam; PF12631; MnmE_helical; 1. DR Pfam; PF10396; TrmE_N; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR TIGRFAMs; TIGR00450; mnmE_trmE_thdF; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS51709; G_TRME; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Hydrolase; Magnesium; KW Metal-binding; Nucleotide-binding; Potassium; Reference proteome; KW tRNA processing. FT CHAIN 1 461 tRNA modification GTPase MnmE. FT /FTId=PRO_0000188882. FT DOMAIN 224 387 TrmE-type G. FT NP_BIND 234 239 GTP. {ECO:0000255|HAMAP-Rule:MF_00379}. FT NP_BIND 253 259 GTP. {ECO:0000255|HAMAP-Rule:MF_00379}. FT NP_BIND 278 281 GTP. {ECO:0000255|HAMAP-Rule:MF_00379}. FT METAL 234 234 Potassium. {ECO:0000255|HAMAP- FT Rule:MF_00379}. FT METAL 238 238 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00379}. FT METAL 253 253 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00379}. FT METAL 255 255 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00379}. FT METAL 258 258 Potassium. {ECO:0000255|HAMAP- FT Rule:MF_00379}. FT METAL 259 259 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00379}. FT BINDING 32 32 Formyltetrahydrofolate. FT {ECO:0000255|HAMAP-Rule:MF_00379}. FT BINDING 89 89 Formyltetrahydrofolate. FT {ECO:0000255|HAMAP-Rule:MF_00379}. FT BINDING 128 128 Formyltetrahydrofolate. FT {ECO:0000255|HAMAP-Rule:MF_00379}. FT BINDING 461 461 Formyltetrahydrofolate. FT {ECO:0000255|HAMAP-Rule:MF_00379}. SQ SEQUENCE 461 AA; 51170 MW; DF7E5C4E3F66636D CRC64; MKNTSSSTTL TMNDTIAAIA TPLGKGAISI IKISGHNALN ILKQLTQKQD FTPRYAYVHD IFSNGVLLDK ALVIYFKAPY SFTGEDVCEI QCHGSPLLAQ NILQACLNLG ARLAKAGEFS KKAFLNHKMD LSEIEASVQL ILCEDESVLN ALARQLKGEL KIFIEEARGN LLKLLASSEV LIDYSEEDIP SDFLDGVSLN LEKQIASFKD LLDFSNAQKQ RNKGHALSIV GKPNAGKSSL LNAMLLEERA LVSDIKGTTR DTIEEVIELK GHKVRLIDTA GIRESADKIE RLGIEKSLKS LENCDIILGV FDLSKPLEKE DFNLIDTLNR AKKPCIVVLN KNDLAPKLEL EILKSYLKIP YTLLETNTLN SKACLKDLSQ KISAFFPKLD TQNKLLLTSL AQKIALENAI TELQNAKNHL ETLELFSYHI LSAIENLNLL TRPYETSQML DSMFSEFCLG K // ID MQMTN_HELPY Reviewed; 231 AA. AC O24915; O32636; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 93. DE RecName: Full=Aminodeoxyfutalosine nucleosidase; DE Short=AFL nucleosidase; DE Short=Aminofutalosine nucleosidase; DE EC=3.2.2.30 {ECO:0000269|PubMed:21098241, ECO:0000269|PubMed:24083939}; DE AltName: Full=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; DE Short=MTA/SAH nucleosidase; DE Short=MTAN; DE EC=3.2.2.9 {ECO:0000269|PubMed:21098241, ECO:0000269|PubMed:24083939}; DE AltName: Full=6-amino-6-deoxyfutalosine N-ribosylhydrolase; GN Name=mtnN; Synonyms=mtn; OrderedLocusNames=HP_0089; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RA Beier D., Scarlato V.; RL Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases. RN [3] RP FUNCTION AS AFL NUCLEOSIDASE, CATALYTIC ACTIVITY, SUBSTRATE RP SPECIFICITY, AND MENAQUINONE BIOSYNTHESIS PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=21098241; DOI=10.1128/AAC.01362-10; RA Arakawa C., Kuratsu M., Furihata K., Hiratsuka T., Itoh N., Seto H., RA Dairi T.; RT "Diversity of the early step of the futalosine pathway."; RL Antimicrob. Agents Chemother. 55:913-916(2011). RN [4] RP FUNCTION AS AFL NUCLEOSIDASE, CATALYTIC ACTIVITY, AND MENAQUINONE RP BIOSYNTHESIS PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=24083939; DOI=10.1021/ja408594p; RA Mahanta N., Fedoseyenko D., Dairi T., Begley T.P.; RT "Menaquinone biosynthesis: formation of aminofutalosine requires a RT unique radical SAM enzyme."; RL J. Am. Chem. Soc. 135:15318-15321(2013). RN [5] RP X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS) OF WILD-TYPE AND MUTANTS RP GLN-14; ALA-199 AND ASN-199 IN COMPLEX WITH 5'-METHYLTHIOADENOSINE. RA Kim R.Q., Offen W.A., Stubbs K.A., Davies G.J.; RT "Structural enzymology of H. pylori futalosine hydrolase."; RL Submitted (SEP-2013) to the PDB data bank. CC -!- FUNCTION: Catalyzes the direct conversion of aminodeoxyfutalosine CC (AFL) into dehypoxanthine futalosine (DHFL) and adenine via the CC hydrolysis of the N-glycosidic bond; this reaction seems to CC represent an essential step in the menaquinone biosynthesis CC pathway in Helicobacter species. Can also probably catalyzes the CC hydrolysis of 5'-methylthioadenosine (MTA) and S- CC adenosylhomocysteine (SAH) to adenine and the corresponding CC thioribose, 5'-methylthioribose and S-ribosylhomocysteine, CC respectively. These other activities highlight the tremendous CC versatility of the enzyme, which also plays key roles in S- CC adenosylmethionine recycling and in the biosynthesis of the CC quorum-sensing molecule autoinducer-2. Does not act on futalosine CC (FL) as substrate. {ECO:0000269|PubMed:21098241, CC ECO:0000269|PubMed:24083939}. CC -!- CATALYTIC ACTIVITY: 6-amino-6-deoxyfutalosine + H(2)O = CC dehypoxanthine futalosine + adenine. {ECO:0000269|PubMed:21098241, CC ECO:0000269|PubMed:24083939}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-homocysteine + H(2)O = S-(5- CC deoxy-D-ribos-5-yl)-L-homocysteine + adenine. CC {ECO:0000269|PubMed:21098241, ECO:0000269|PubMed:24083939}. CC -!- CATALYTIC ACTIVITY: S-methyl-5'-thioadenosine + H(2)O = S-methyl- CC 5-thio-D-ribose + adenine. {ECO:0000269|PubMed:21098241, CC ECO:0000269|PubMed:24083939}. CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC -!- PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via CC salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from CC S-methyl-5'-thioadenosine (hydrolase route): step 1/2. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the PNP/UDP phosphorylase family. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAC64855.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07157.1; -; Genomic_DNA. DR EMBL; AF009177; AAC64855.1; ALT_INIT; Genomic_DNA. DR PIR; A64531; A64531. DR RefSeq; NP_206889.1; NC_000915.1. DR RefSeq; WP_000250146.1; NC_018939.1. DR PDB; 4BMX; X-ray; 1.76 A; A/B=1-231. DR PDB; 4BMY; X-ray; 1.65 A; A/B=1-231. DR PDB; 4BMZ; X-ray; 1.79 A; A/B=1-231. DR PDB; 4BN0; X-ray; 2.11 A; A/B/C/D=1-231. DR PDBsum; 4BMX; -. DR PDBsum; 4BMY; -. DR PDBsum; 4BMZ; -. DR PDBsum; 4BN0; -. DR ProteinModelPortal; O24915; -. DR IntAct; O24915; 2. DR STRING; 85962.HP0089; -. DR PaxDb; O24915; -. DR PRIDE; O24915; -. DR EnsemblBacteria; AAD07157; AAD07157; HP_0089. DR GeneID; 900251; -. DR KEGG; heo:C694_00435; -. DR KEGG; hpy:HP0089; -. DR PATRIC; 20591387; VBIHelPyl33062_0094. DR eggNOG; ENOG4105DUF; Bacteria. DR eggNOG; COG0775; LUCA. DR KO; K18284; -. DR OMA; SGDQFVH; -. DR OrthoDB; EOG64JFVR; -. DR BioCyc; HPY:HP0089-MONOMER; -. DR BRENDA; 3.2.2.30; 2604. DR UniPathway; UPA00079; -. DR UniPathway; UPA00904; UER00871. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008782; F:adenosylhomocysteine nucleosidase activity; IEA:UniProtKB-EC. DR GO; GO:0008930; F:methylthioadenosine nucleosidase activity; IEA:InterPro. DR GO; GO:0019509; P:L-methionine biosynthetic process from methylthioadenosine; IEA:UniProtKB-UniPathway. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009164; P:nucleoside catabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1580; -; 1. DR InterPro; IPR010049; MTA_SAH_Nsdase. DR InterPro; IPR018017; Nucleoside_phosphorylase. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR PANTHER; PTHR21234; PTHR21234; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR TIGRFAMs; TIGR01704; MTA/SAH-Nsdase; 1. PE 1: Evidence at protein level; KW 3D-structure; Amino-acid biosynthesis; Complete proteome; Hydrolase; KW Menaquinone biosynthesis; Methionine biosynthesis; Reference proteome. FT CHAIN 1 231 Aminodeoxyfutalosine nucleosidase. FT /FTId=PRO_0000164443. FT REGION 175 176 Substrate binding. FT ACT_SITE 14 14 Proton acceptor. {ECO:0000250}. FT ACT_SITE 199 199 Proton donor. {ECO:0000305}. FT BINDING 81 81 Substrate; via amide nitrogen. FT BINDING 155 155 Substrate; via amide nitrogen and FT carbonyl oxygen. FT CONFLICT 25 25 D -> G (in Ref. 2; AAC64855). FT {ECO:0000305}. FT CONFLICT 109 109 D -> N (in Ref. 2; AAC64855). FT {ECO:0000305}. FT CONFLICT 134 134 E -> K (in Ref. 2; AAC64855). FT {ECO:0000305}. FT CONFLICT 142 142 V -> A (in Ref. 2; AAC64855). FT {ECO:0000305}. FT CONFLICT 147 147 V -> L (in Ref. 2; AAC64855). FT {ECO:0000305}. FT CONFLICT 230 230 E -> R (in Ref. 2; AAC64855). FT {ECO:0000305}. FT STRAND 3 11 {ECO:0000244|PDB:4BMY}. FT HELIX 12 22 {ECO:0000244|PDB:4BMY}. FT STRAND 27 31 {ECO:0000244|PDB:4BMY}. FT STRAND 34 41 {ECO:0000244|PDB:4BMY}. FT STRAND 44 50 {ECO:0000244|PDB:4BMY}. FT HELIX 55 69 {ECO:0000244|PDB:4BMY}. FT STRAND 72 82 {ECO:0000244|PDB:4BMY}. FT STRAND 92 100 {ECO:0000244|PDB:4BMY}. FT HELIX 106 108 {ECO:0000244|PDB:4BMY}. FT STRAND 120 123 {ECO:0000244|PDB:4BMY}. FT HELIX 126 139 {ECO:0000244|PDB:4BMY}. FT STRAND 143 150 {ECO:0000244|PDB:4BMY}. FT HELIX 158 168 {ECO:0000244|PDB:4BMY}. FT STRAND 171 176 {ECO:0000244|PDB:4BMY}. FT HELIX 177 187 {ECO:0000244|PDB:4BMY}. FT STRAND 191 199 {ECO:0000244|PDB:4BMY}. FT HELIX 211 228 {ECO:0000244|PDB:4BMY}. SQ SEQUENCE 231 AA; 25209 MW; 8704A43F0189CD08 CRC64; MVQKIGILGA MREEITPILE LFGVDFEEIP LGGNVFHKGV YHNKEIIVAY SKIGKVHSTL TTTSMILAFG VQKVLFSGVA GSLVKDLKIN DLLVAIQLVQ HDVDLSAFDH PLGFIPESAI FIETSESLNA LAKEVANEQH IVLKEGVIAS GDQFVHSKER KEFLVSEFKA SAVEMEGASV AFVCQKFGVP CCVLRSISDN ADEEANMSFD AFLEKSAQTS AKFLKSMVDE L // ID MRAY_HELPY Reviewed; 353 AA. AC O25235; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 109. DE RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000255|HAMAP-Rule:MF_00038}; DE EC=2.7.8.13 {ECO:0000255|HAMAP-Rule:MF_00038}; DE AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00038}; GN Name=mraY {ECO:0000255|HAMAP-Rule:MF_00038}; GN OrderedLocusNames=HP_0493; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: First step of the lipid cycle reactions in the CC biosynthesis of the cell wall peptidoglycan. {ECO:0000255|HAMAP- CC Rule:MF_00038}. CC -!- CATALYTIC ACTIVITY: UDP-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala- CC D-Ala) + undecaprenyl phosphate = UMP + Mur2Ac(oyl-L-Ala-gamma-D- CC Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol. {ECO:0000255|HAMAP- CC Rule:MF_00038}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00038}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00038}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00038}. CC -!- SIMILARITY: Belongs to the glycosyltransferase 4 family. MraY CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00038}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07559.1; -; Genomic_DNA. DR PIR; E64581; E64581. DR RefSeq; NP_207290.1; NC_000915.1. DR RefSeq; WP_000967129.1; NC_018939.1. DR ProteinModelPortal; O25235; -. DR STRING; 85962.HP0493; -. DR PaxDb; O25235; -. DR PRIDE; O25235; -. DR EnsemblBacteria; AAD07559; AAD07559; HP_0493. DR GeneID; 900058; -. DR KEGG; heo:C694_02535; -. DR KEGG; hpy:HP0493; -. DR PATRIC; 20592261; VBIHelPyl33062_0519. DR eggNOG; ENOG4105CPY; Bacteria. DR eggNOG; COG0472; LUCA. DR KO; K01000; -. DR OMA; HQNKKDT; -. DR OrthoDB; EOG69GZPZ; -. DR BioCyc; HPY:HP0493-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008963; F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051992; F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity; IEA:UniProtKB-EC. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR HAMAP; MF_00038; MraY; 1. DR InterPro; IPR000715; Glycosyl_transferase_4. DR InterPro; IPR003524; PNAcMuramoyl-5peptid_Trfase. DR InterPro; IPR018480; PNAcMuramoyl-5peptid_Trfase_CS. DR PANTHER; PTHR22926; PTHR22926; 1. DR Pfam; PF00953; Glycos_transf_4; 1. DR Pfam; PF10555; MraY_sig1; 1. DR TIGRFAMs; TIGR00445; mraY; 1. DR PROSITE; PS01347; MRAY_1; 1. DR PROSITE; PS01348; MRAY_2; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell inner membrane; Cell membrane; KW Cell shape; Cell wall biogenesis/degradation; Complete proteome; KW Membrane; Peptidoglycan synthesis; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 353 Phospho-N-acetylmuramoyl-pentapeptide- FT transferase. FT /FTId=PRO_0000108836. FT TRANSMEM 24 44 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 66 86 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 88 108 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 129 149 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 160 180 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 192 212 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 229 249 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 256 276 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 281 301 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. FT TRANSMEM 330 350 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00038}. SQ SEQUENCE 353 AA; 39170 MW; 1BF7B35A9F29A91A CRC64; MLYSLLYGYF NINLFQYLTF RAGLGFFIAF FLTLFLMPKF ILWAKAKKAN QPISSFVPSH QNKKDTPTMG GIVFVFATIV ASVLCASLGN LYVLLGLIVL VGFSFVGFRD DYTKINQQSN AGMSAKMKFG MLFILSLIVS VLLSLKGLDT FLYAPFLKNP LFEMPTMLAV GFWVLVFLST SNAVNLTDGL DGLASVPSIF TLLSLSIFVY VAGNAEFSKY LLYPKVIDVG ELFVVSLALV GSLFGFLWYN CNPASVFMGD SGSLALGGFI AYNAIVSHNE ILLVLMGSIF VIETLSVILQ VGSYKTRKKR LFLMAPIHHH FEQKGWAENK VIVRFWIISM LSNLVALLSL KVR // ID MOAE_HELPY Reviewed; 145 AA. AC P56422; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Molybdopterin synthase catalytic subunit; DE EC=2.8.1.12; DE AltName: Full=MPT synthase subunit 2; DE AltName: Full=Molybdenum cofactor biosynthesis protein E; DE AltName: Full=Molybdopterin-converting factor large subunit; DE AltName: Full=Molybdopterin-converting factor subunit 2; GN Name=moaE; OrderedLocusNames=HP_0800; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Converts molybdopterin precursor Z into molybdopterin. CC This requires the incorporation of two sulfur atoms into precursor CC Z to generate a dithiolene group. The sulfur is provided by MoaD CC (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Cyclic pyranopterin phosphate + 2 CC [molybdopterin-synthase sulfur-carrier protein]-Gly-NH-CH(2)- CC C(O)SH + H(2)O = molybdopterin + 2 [molybdopterin-synthase sulfur- CC carrier protein]. CC -!- PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. CC -!- SUBUNIT: Heterotetramer of 2 MoaD subunits and 2 MoaE subunits. CC Also stable as homodimer. The enzyme changes between these two CC forms during catalysis (By similarity). {ECO:0000250}. CC -!- INTERACTION: CC O25482:HP_0801; NbExp=3; IntAct=EBI-7674385, EBI-7674271; CC -!- SIMILARITY: Belongs to the MoaE family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07850.1; -; Genomic_DNA. DR PIR; H64619; H64619. DR RefSeq; NP_207593.1; NC_000915.1. DR RefSeq; WP_000912676.1; NC_018939.1. DR PDB; 3RPF; X-ray; 1.90 A; A/B=2-145. DR PDBsum; 3RPF; -. DR ProteinModelPortal; P56422; -. DR DIP; DIP-3522N; -. DR IntAct; P56422; 9. DR MINT; MINT-169161; -. DR STRING; 85962.HP0800; -. DR PaxDb; P56422; -. DR PRIDE; P56422; -. DR DNASU; 898921; -. DR EnsemblBacteria; AAD07850; AAD07850; HP_0800. DR GeneID; 898921; -. DR KEGG; heo:C694_04100; -. DR KEGG; hpy:HP0800; -. DR PATRIC; 20592887; VBIHelPyl33062_0832. DR eggNOG; ENOG4108ZEX; Bacteria. DR eggNOG; COG0314; LUCA. DR KO; K03635; -. DR OMA; KWHHKAK; -. DR OrthoDB; EOG6KMBD9; -. DR BioCyc; HPY:HP0800-MONOMER; -. DR UniPathway; UPA00344; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030366; F:molybdopterin synthase activity; IEA:UniProtKB-EC. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.90.1170.40; -; 1. DR InterPro; IPR003448; Mopterin_biosynth_MoaE. DR Pfam; PF02391; MoaE; 1. DR SUPFAM; SSF54690; SSF54690; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Molybdenum cofactor biosynthesis; KW Reference proteome; Transferase. FT CHAIN 1 145 Molybdopterin synthase catalytic subunit. FT /FTId=PRO_0000163086. FT REGION 36 38 Substrate binding. {ECO:0000250}. FT REGION 97 98 Substrate binding. {ECO:0000250}. FT REGION 120 122 Substrate binding. {ECO:0000250}. FT BINDING 113 113 Substrate. {ECO:0000250}. FT STRAND 2 8 {ECO:0000244|PDB:3RPF}. FT HELIX 11 24 {ECO:0000244|PDB:3RPF}. FT STRAND 29 36 {ECO:0000244|PDB:3RPF}. FT STRAND 45 50 {ECO:0000244|PDB:3RPF}. FT HELIX 52 68 {ECO:0000244|PDB:3RPF}. FT STRAND 71 83 {ECO:0000244|PDB:3RPF}. FT STRAND 87 97 {ECO:0000244|PDB:3RPF}. FT HELIX 98 115 {ECO:0000244|PDB:3RPF}. FT STRAND 118 124 {ECO:0000244|PDB:3RPF}. FT STRAND 127 130 {ECO:0000244|PDB:3RPF}. FT HELIX 132 134 {ECO:0000244|PDB:3RPF}. FT TURN 139 142 {ECO:0000244|PDB:3RPF}. SQ SEQUENCE 145 AA; 16627 MW; D1DCD65D54AC9231 CRC64; MLKIIQGALD TRELLKAYQE EACAKNFGAF CVFVGIVRKE DNIQGLSFDI YEALLKTWFE KWHHKAKDLG VVLKMAHSLG DVLIGQSSFL CVSMGKNRKN ALELYENFIE DFKHNAPIWK YDLIHNKRIY AKERSHPLKG SGLLA // ID MOG_HELPY Reviewed; 176 AA. AC P56421; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Molybdopterin adenylyltransferase; DE Short=MPT adenylyltransferase; DE EC=2.7.7.75; GN Name=mog; Synonyms=mogA; OrderedLocusNames=HP_0799; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the adenylation of molybdopterin as part of CC the biosynthesis of the molybdenum-cofactor. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + molybdopterin = diphosphate + adenylyl- CC molybdopterin. CC -!- PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. CC -!- SIMILARITY: Belongs to the MoaB/Mog family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07849.1; -; Genomic_DNA. DR PIR; G64619; G64619. DR RefSeq; NP_207592.1; NC_000915.1. DR RefSeq; WP_001193328.1; NC_018939.1. DR ProteinModelPortal; P56421; -. DR SMR; P56421; 6-175. DR IntAct; P56421; 2. DR STRING; 85962.HP0799; -. DR PaxDb; P56421; -. DR PRIDE; P56421; -. DR EnsemblBacteria; AAD07849; AAD07849; HP_0799. DR GeneID; 899350; -. DR KEGG; heo:C694_04095; -. DR KEGG; hpy:HP0799; -. DR PATRIC; 20592885; VBIHelPyl33062_0831. DR eggNOG; ENOG4108RIR; Bacteria. DR eggNOG; COG0521; LUCA. DR KO; K03831; -. DR OMA; AAVPYCL; -. DR OrthoDB; EOG6SV58B; -. DR BioCyc; HPY:HP0799-MONOMER; -. DR UniPathway; UPA00344; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0061598; F:molybdopterin adenylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.980.10; -; 1. DR InterPro; IPR001453; MoaB/Mog_dom. DR InterPro; IPR008284; MoCF_biosynth_CS. DR Pfam; PF00994; MoCF_biosynth; 1. DR SMART; SM00852; MoCF_biosynth; 1. DR SUPFAM; SSF53218; SSF53218; 1. DR TIGRFAMs; TIGR00177; molyb_syn; 1. DR PROSITE; PS01078; MOCF_BIOSYNTHESIS_1; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Molybdenum cofactor biosynthesis; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 176 Molybdopterin adenylyltransferase. FT /FTId=PRO_0000170985. SQ SEQUENCE 176 AA; 19677 MW; 9E244CC047172703 CRC64; MQTIHIGVLS ASDRASKGIY EDLSGKAIQE VLSEYLLNPL EFYYEIVADE RDLIEKSLIK MCDEYQCDLV VTTGGTGPAL RDITPEATEK VCQKMLPGFG ELMRMTSLKY VPTAILSRQS AGIRNKSLII NLPGKPKSIR ECLEAVFPAI PYCVDLILGN YMQVNEKNIQ AFRPKQ // ID MOTB_HELPY Reviewed; 257 AA. AC P56427; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-MAY-2016, entry version 103. DE RecName: Full=Motility protein B; DE AltName: Full=Chemotaxis protein MotB; GN Name=motB; OrderedLocusNames=HP_0816; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: MotA and MotB comprise the stator element of the CC flagellar motor complex. Required for the rotation of the CC flagellar motor. Might be a linker that fastens the torque- CC generating machinery to the cell wall (By similarity). CC {ECO:0000250}. CC -!- SUBUNIT: Each stator complex is composed of 4 MotA and 2 MotB CC subunits. 2 A subunits and 1 B subunit are thought to form a CC single ion channel, so that each stator complex contains two CC channels (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Single- CC pass type II membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the MotB family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 OmpA-like domain. {ECO:0000255|PROSITE- CC ProRule:PRU00473}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07865.1; -; Genomic_DNA. DR PIR; H64621; H64621. DR RefSeq; NP_207609.1; NC_000915.1. DR RefSeq; WP_001085308.1; NC_000915.1. DR PDB; 3CYP; X-ray; 1.60 A; B/C/D/E=126-257. DR PDB; 3CYQ; X-ray; 2.30 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=126-257. DR PDB; 3IMP; X-ray; 2.50 A; A/B/C/D/E/F/G/H/I/J/K/L=126-257. DR PDB; 3S02; X-ray; 2.50 A; A/B=104-257. DR PDB; 3S03; X-ray; 2.50 A; A/B/C/D=98-257. DR PDB; 3S06; X-ray; 1.80 A; A/B=98-257. DR PDB; 3S0H; X-ray; 2.10 A; A/B/C/D=91-257. DR PDB; 3S0W; X-ray; 2.50 A; A/B=79-257. DR PDB; 3S0Y; X-ray; 1.80 A; A/B=65-257. DR PDBsum; 3CYP; -. DR PDBsum; 3CYQ; -. DR PDBsum; 3IMP; -. DR PDBsum; 3S02; -. DR PDBsum; 3S03; -. DR PDBsum; 3S06; -. DR PDBsum; 3S0H; -. DR PDBsum; 3S0W; -. DR PDBsum; 3S0Y; -. DR ProteinModelPortal; P56427; -. DR SMR; P56427; 126-253. DR DIP; DIP-3662N; -. DR IntAct; P56427; 4. DR MINT; MINT-177662; -. DR STRING; 85962.HP0816; -. DR PaxDb; P56427; -. DR PRIDE; P56427; -. DR EnsemblBacteria; AAD07865; AAD07865; HP_0816. DR GeneID; 899358; -. DR KEGG; hpy:HP0816; -. DR PATRIC; 20592919; VBIHelPyl33062_0848. DR eggNOG; ENOG4108SEK; Bacteria. DR eggNOG; COG1360; LUCA. DR KO; K02557; -. DR OMA; LWIEIEL; -. DR OrthoDB; EOG610418; -. DR BioCyc; HPY:HP0816-MONOMER; -. DR EvolutionaryTrace; P56427; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0097588; P:archaeal or bacterial-type flagellum-dependent cell motility; IEA:UniProtKB-KW. DR GO; GO:0006935; P:chemotaxis; IEA:UniProtKB-KW. DR Gene3D; 3.30.1330.60; -; 1. DR InterPro; IPR025713; MotB_N_dom. DR InterPro; IPR006665; OmpA-like. DR Pfam; PF13677; MotB_plug; 1. DR Pfam; PF00691; OmpA; 1. DR SUPFAM; SSF103088; SSF103088; 1. DR PROSITE; PS51123; OMPA_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Cell inner membrane; Cell membrane; Chemotaxis; KW Complete proteome; Flagellar rotation; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 257 Motility protein B. FT /FTId=PRO_0000189588. FT TOPO_DOM 1 16 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 17 37 Helical. {ECO:0000255}. FT TOPO_DOM 38 257 Periplasmic. {ECO:0000255}. FT DOMAIN 113 236 OmpA-like. {ECO:0000255|PROSITE- FT ProRule:PRU00473}. FT HELIX 77 83 {ECO:0000244|PDB:3S0Y}. FT STRAND 95 100 {ECO:0000244|PDB:3S0Y}. FT TURN 101 103 {ECO:0000244|PDB:3S0Y}. FT STRAND 108 112 {ECO:0000244|PDB:3S06}. FT STRAND 115 120 {ECO:0000244|PDB:3S06}. FT HELIX 122 124 {ECO:0000244|PDB:3S06}. FT STRAND 126 128 {ECO:0000244|PDB:3S0Y}. FT STRAND 129 131 {ECO:0000244|PDB:3S06}. FT HELIX 136 149 {ECO:0000244|PDB:3CYP}. FT STRAND 157 163 {ECO:0000244|PDB:3CYP}. FT STRAND 171 173 {ECO:0000244|PDB:3CYP}. FT HELIX 177 194 {ECO:0000244|PDB:3CYP}. FT HELIX 199 201 {ECO:0000244|PDB:3CYP}. FT STRAND 202 206 {ECO:0000244|PDB:3CYP}. FT STRAND 216 218 {ECO:0000244|PDB:3S0H}. FT HELIX 219 225 {ECO:0000244|PDB:3CYP}. FT STRAND 226 235 {ECO:0000244|PDB:3CYP}. FT HELIX 236 250 {ECO:0000244|PDB:3CYP}. SQ SEQUENCE 257 AA; 28849 MW; 58C1774B0547C032 CRC64; MAKKNKPTEC PAGEKWAVPY ADFLSLLLAL FIALYAISAV NKSKVEALKT EFIKIFNYAP KPEAMQPVVV IPPDSGKEEE QMASESSKPA SQNTETKATI ARKGEGSVLE QIDQGSILKL PSNLLFENAT SDAINQDMML YIERIAKIIQ KLPKRVHINV RGFTDDTPLV KTRFKSHYEL AANRAYRVMK VLIQYGVNPN QLSFSSYGST NPIAPNDSLE NRMKNNRVEI FFSTDANDLS KIHSILDNEF NPHKQQE // ID MSRAB_HELPY Reviewed; 359 AA. AC O25011; O85224; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 111. DE RecName: Full=Peptide methionine sulfoxide reductase MsrA/MsrB; DE Includes: DE RecName: Full=Peptide methionine sulfoxide reductase MsrA; DE Short=Protein-methionine-S-oxide reductase; DE EC=1.8.4.11; DE AltName: Full=Peptide-methionine (S)-S-oxide reductase; DE Short=Peptide Met(O) reductase; DE Includes: DE RecName: Full=Peptide methionine sulfoxide reductase MsrB; DE EC=1.8.4.12; DE AltName: Full=Peptide-methionine (R)-S-oxide reductase; GN Name=msrAB; Synonyms=msrA; OrderedLocusNames=HP_0224; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9596777; RA Cao P., McClain M.S., Forsyth M.H., Cover T.L.; RT "Extracellular release of antigenic proteins by Helicobacter pylori."; RL Infect. Immun. 66:2984-2986(1998). CC -!- FUNCTION: Has an important function as a repair enzyme for CC proteins that have been inactivated by oxidation. Catalyzes the CC reversible oxidation-reduction of methionine sulfoxide in proteins CC to methionine (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Peptide-L-methionine + thioredoxin disulfide + CC H(2)O = peptide-L-methionine (S)-S-oxide + thioredoxin. CC -!- CATALYTIC ACTIVITY: L-methionine + thioredoxin disulfide + H(2)O = CC L-methionine (S)-S-oxide + thioredoxin. CC -!- CATALYTIC ACTIVITY: Peptide-L-methionine + thioredoxin disulfide + CC H(2)O = peptide-L-methionine (R)-S-oxide + thioredoxin. CC -!- SIMILARITY: In the N-terminal section; belongs to the MsrA Met CC sulfoxide reductase family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the MsrB Met CC sulfoxide reductase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 MsrB (methionine-R-sulfoxide reductase) CC domain. {ECO:0000255|PROSITE-ProRule:PRU01126}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07291.1; -; Genomic_DNA. DR EMBL; AF053709; AAC24211.1; -; Genomic_DNA. DR PIR; H64547; H64547. DR RefSeq; NP_207022.1; NC_000915.1. DR RefSeq; WP_000866624.1; NC_018939.1. DR ProteinModelPortal; O25011; -. DR SMR; O25011; 34-193, 201-338. DR DIP; DIP-3282N; -. DR IntAct; O25011; 9. DR MINT; MINT-165680; -. DR STRING; 85962.HP0224; -. DR PaxDb; O25011; -. DR PRIDE; O25011; -. DR EnsemblBacteria; AAD07291; AAD07291; HP_0224. DR GeneID; 900130; -. DR KEGG; heo:C694_01130; -. DR KEGG; hpy:HP0224; -. DR PATRIC; 20591671; VBIHelPyl33062_0235. DR eggNOG; ENOG4108F19; Bacteria. DR eggNOG; COG0225; LUCA. DR eggNOG; COG0229; LUCA. DR KO; K12267; -. DR OMA; VVKYEDD; -. DR OrthoDB; EOG6091JX; -. DR BioCyc; HPY:HP0224-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0033743; F:peptide-methionine (R)-S-oxide reductase activity; IEA:UniProtKB-EC. DR GO; GO:0008113; F:peptide-methionine (S)-S-oxide reductase activity; IEA:UniProtKB-EC. DR GO; GO:0030091; P:protein repair; IEA:InterPro. DR GO; GO:0006979; P:response to oxidative stress; IEA:InterPro. DR Gene3D; 2.170.150.20; -; 1. DR Gene3D; 3.30.1060.10; -; 1. DR HAMAP; MF_01401; MsrA; 1. DR InterPro; IPR028427; Met_Sox_Rdtase. DR InterPro; IPR002569; Met_Sox_Rdtase_MsrA. DR InterPro; IPR002579; Met_Sox_Rdtase_MsrB. DR InterPro; IPR011057; Mss4-like. DR PANTHER; PTHR10173; PTHR10173; 2. DR Pfam; PF01625; PMSR; 1. DR Pfam; PF01641; SelR; 1. DR SUPFAM; SSF51316; SSF51316; 1. DR SUPFAM; SSF55068; SSF55068; 1. DR TIGRFAMs; TIGR00401; msrA; 1. DR TIGRFAMs; TIGR00357; TIGR00357; 1. DR PROSITE; PS51790; MSRB; 1. PE 3: Inferred from homology; KW Complete proteome; Multifunctional enzyme; Oxidoreductase; KW Reference proteome. FT CHAIN 1 359 Peptide methionine sulfoxide reductase FT MsrA/MsrB. FT /FTId=PRO_0000138515. FT DOMAIN 206 329 MsrB. {ECO:0000255|PROSITE- FT ProRule:PRU01126}. FT REGION 36 189 Peptide methionine sulfoxide reductase A. FT ACT_SITE 44 44 {ECO:0000250}. FT ACT_SITE 318 318 Nucleophile. {ECO:0000255|PROSITE- FT ProRule:PRU01126}. FT CONFLICT 9 9 N -> I (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 15 15 A -> L (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 23 23 S -> N (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 135 135 A -> T (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 142 142 H -> N (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 170 170 E -> K (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 181 181 S -> G (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 198 198 D -> S (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 346 346 K -> R (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 354 354 N -> Q (in Ref. 2; AAC24211). FT {ECO:0000305}. FT CONFLICT 358 358 S -> T (in Ref. 2; AAC24211). FT {ECO:0000305}. SQ SEQUENCE 359 AA; 41275 MW; D481FAC5C60927B3 CRC64; MKVLSYLKNF YLFLAIGAIM QASENMGSQH QKTDERVIYL AGGCFWGLEA YMERIYGVID ASSGYANGKT SSTNYEKLHE SDHAESVKVI YDPKKISLDK LLRYYFKVVD PVSVNKQGND VGRQYRTGIY YVNSADKEVI DHALKALQKE VKGKIAIEVE PLKNYVRAEE YHQDYLKKHP SGYCHIDLKK ADEVIVDDDK YTKPSDEVLK KKLTKLQYEV TQNKHTEKPF ENEYYNKEEE GIYVDITTGE PLFSSADKYD SGCGWPSFSK PINKDVVKYE DDESLNRKRI EVLSRIGKAH LGHVFNDGPK ELGGLRYCIN SAALRFIPLK DMEKEGYGEF IPYIKKGELK KYINDKKSH // ID MNMG_HELPY Reviewed; 621 AA. AC P56138; O32632; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 20-JAN-2016, entry version 101. DE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; DE AltName: Full=Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; GN Name=mnmG {ECO:0000255|HAMAP-Rule:MF_00129}; GN Synonyms=gidA {ECO:0000255|HAMAP-Rule:MF_00129}; GN OrderedLocusNames=HP_0213; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RA Karita M., Etterbeek M.L., Forsyth M.H., Tummuru M.K.R., Blaser M.J.; RL Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: NAD-binding protein involved in the addition of a CC carboxymethylaminomethyl (cmnm) group at the wobble position (U34) CC of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. {ECO:0000255|HAMAP- CC Rule:MF_00129}. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00129}; CC -!- SUBUNIT: Homodimer. Heterotetramer of two MnmE and two MnmG CC subunits. {ECO:0000255|HAMAP-Rule:MF_00129}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00129}. CC -!- SIMILARITY: Belongs to the MnmG family. {ECO:0000255|HAMAP- CC Rule:MF_00129}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07281.1; -; Genomic_DNA. DR EMBL; AF008565; AAB63296.1; -; Genomic_DNA. DR PIR; E64546; E64546. DR RefSeq; NP_207011.1; NC_000915.1. DR RefSeq; WP_000238111.1; NC_018939.1. DR ProteinModelPortal; P56138; -. DR DIP; DIP-3538N; -. DR IntAct; P56138; 1. DR MINT; MINT-178352; -. DR STRING; 85962.HP0213; -. DR PaxDb; P56138; -. DR PRIDE; P56138; -. DR EnsemblBacteria; AAD07281; AAD07281; HP_0213. DR GeneID; 898934; -. DR KEGG; heo:C694_01070; -. DR KEGG; hpy:HP0213; -. DR PATRIC; 20591649; VBIHelPyl33062_0224. DR eggNOG; ENOG4107RE5; Bacteria. DR eggNOG; COG0445; LUCA. DR KO; K03495; -. DR OMA; FRPGYAI; -. DR OrthoDB; EOG6W9X6J; -. DR BioCyc; HPY:HP0213-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 1. DR HAMAP; MF_00129; MnmG_GidA; 1. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR026904; GidA-assoc_3. DR InterPro; IPR004416; MnmG. DR InterPro; IPR002218; MnmG-rel. DR InterPro; IPR020595; MnmG-rel_CS. DR Pfam; PF01134; GIDA; 1. DR Pfam; PF13932; GIDA_assoc; 1. DR SUPFAM; SSF51905; SSF51905; 2. DR TIGRFAMs; TIGR00136; gidA; 1. DR PROSITE; PS01280; GIDA_1; 1. DR PROSITE; PS01281; GIDA_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; FAD; Flavoprotein; NAD; KW Reference proteome; tRNA processing. FT CHAIN 1 621 tRNA uridine 5-carboxymethylaminomethyl FT modification enzyme MnmG. FT /FTId=PRO_0000117112. FT NP_BIND 11 16 FAD. {ECO:0000255|HAMAP-Rule:MF_00129}. FT NP_BIND 270 284 NAD. {ECO:0000255|HAMAP-Rule:MF_00129}. FT VARIANT 10 10 V -> I (in strain: 60190). FT VARIANT 105 105 L -> F (in strain: 60190). FT VARIANT 193 193 D -> E (in strain: 60190). FT VARIANT 220 220 T -> A (in strain: 60190). FT VARIANT 302 302 S -> N (in strain: 60190). FT VARIANT 353 353 T -> A (in strain: 60190). FT VARIANT 379 379 A -> D (in strain: 60190). FT VARIANT 415 415 I -> V (in strain: 60190). FT VARIANT 457 457 E -> Q (in strain: 60190). FT VARIANT 480 481 YI -> CV (in strain: 60190). FT VARIANT 487 488 EV -> KL (in strain: 60190). FT VARIANT 493 493 D -> N (in strain: 60190). FT VARIANT 505 505 D -> N (in strain: 60190). SQ SEQUENCE 621 AA; 69684 MW; C5C5CE80259E49E8 CRC64; MVKESDILVV GGGHAGIEAS LIAAKMGARV HLITMLIDTI GLASCNPAIG GLGKGHLTKE VDVLGGAMGI ITDHSGLQYR VLNASKGPAV RGTRAQIDMD TYRILARNLV LNTPNLSVSQ EMTESLILEN DEVVGVTTNI NNTYRAKKVI ITTGTFLKGV VHIGEHQNQN GRFGENASNS LALNLRELGF KVDRLKTGTC PRVAGNSIDF EGLEEHFGDT NPPYFSYKTK DFNPTQLSCF ITYTNPITHQ IIRDNFHRAP LFSGQIEGIG PRYCPSIEDK INRFSEKERH QLFLEPQTIH KSEYYINGLS TSLPLDVQEK VIHSIKGLEN ALITRYGYAI EYDFIQPTEL THTLETKKIK GLYLAGQING TTGYEEAAAQ GLMAGINAVL ALKNQAPFIL KRNEAYIGVL IDDLITKGTN EPYRMFTSRA EYRLLLREDN TLFRLGEHAY RLGLMEEDFY KELKKDKQEI QDNLKRLKEY ILTPSKEVLK RLDELDENPI NDKVDGVSLL ARDSFNAEKM RSFFSFLAPL NERVLEQIKI ECKYNIYIEK QHENIAKMDS MLKVSIPKGF VFKGIPGLSL EAVEKLEKFR PKSLFEASEI SGITPANLDV LHLYIHLRKN S // ID MOAC_HELPY Reviewed; 158 AA. AC Q48260; Q05188; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 09-DEC-2015, entry version 99. DE RecName: Full=Cyclic pyranopterin monophosphate synthase accessory protein; DE AltName: Full=Molybdenum cofactor biosynthesis protein C; GN Name=moaC; OrderedLocusNames=HP_0798; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 14-158. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=9287032; RA Jones A.C., Logan R.P., Foynes S., Cockayne A., Wren B.W., Penn C.W.; RT "A flagellar sheath protein of Helicobacter pylori is identical to RT HpaA, a putative N-acetylneuraminyllactose-binding hemagglutinin, but RT is not an adhesin for AGS cells."; RL J. Bacteriol. 179:5643-5647(1997). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 8-126. RC STRAIN=8826; RX PubMed=7678592; RA Evans D.G., Karjalainen T.K., Evans D.J. Jr., Graham D.Y., Lee C.-H.; RT "Cloning, nucleotide sequence, and expression of a gene encoding an RT adhesin subunit protein of Helicobacter pylori."; RL J. Bacteriol. 175:674-683(1993). CC -!- FUNCTION: Together with MoaA, is involved in the conversion of 5'- CC GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin CC precursor Z). {ECO:0000250}. CC -!- PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. CC -!- SIMILARITY: Belongs to the MoaC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07848.1; -; Genomic_DNA. DR EMBL; X92502; CAA63245.1; -; Genomic_DNA. DR EMBL; X61574; CAA43772.1; -; Genomic_DNA. DR PIR; F64619; F64619. DR RefSeq; NP_207591.1; NC_000915.1. DR RefSeq; WP_001131513.1; NC_018939.1. DR ProteinModelPortal; Q48260; -. DR DIP; DIP-3520N; -. DR IntAct; Q48260; 2. DR MINT; MINT-173134; -. DR STRING; 85962.HP0798; -. DR PaxDb; Q48260; -. DR PRIDE; Q48260; -. DR EnsemblBacteria; AAD07848; AAD07848; HP_0798. DR GeneID; 899974; -. DR KEGG; heo:C694_04090; -. DR KEGG; hpy:HP0798; -. DR PATRIC; 20592883; VBIHelPyl33062_0830. DR eggNOG; ENOG4108YXW; Bacteria. DR eggNOG; COG0315; LUCA. DR KO; K03637; -. DR OMA; DDDGQYP; -. DR OrthoDB; EOG6SV58B; -. DR BioCyc; HPY:HP0798-MONOMER; -. DR UniPathway; UPA00344; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.640; -; 1. DR HAMAP; MF_01224_B; MoaC_B; 1. DR InterPro; IPR023045; Mo_CF_biosynth-C. DR InterPro; IPR023046; Mo_CF_biosynth-C_bac. DR InterPro; IPR002820; Mopterin_CF_biosynth-C_dom. DR Pfam; PF01967; MoaC; 1. DR SUPFAM; SSF55040; SSF55040; 1. DR TIGRFAMs; TIGR00581; moaC; 1. PE 3: Inferred from homology; KW Complete proteome; Molybdenum cofactor biosynthesis; KW Reference proteome. FT CHAIN 1 158 Cyclic pyranopterin monophosphate FT synthase accessory protein. FT /FTId=PRO_0000097804. FT ACT_SITE 127 127 {ECO:0000255}. FT CONFLICT 47 47 C -> G (in Ref. 2 and 3). {ECO:0000305}. FT CONFLICT 64 64 G -> A (in Ref. 3; CAA43772). FT {ECO:0000305}. FT CONFLICT 108 108 T -> S (in Ref. 3; CAA43772). FT {ECO:0000305}. FT CONFLICT 114 126 ALMSVSIGLLTIY -> GANECERRAFNHL (in Ref. FT 3). {ECO:0000305}. FT CONFLICT 120 120 I -> V (in Ref. 2; CAA63245). FT {ECO:0000305}. FT CONFLICT 145 145 H -> Y (in Ref. 2; CAA63245). FT {ECO:0000305}. SQ SEQUENCE 158 AA; 17271 MW; 95813DE88C069A7D CRC64; MPLTHLNEEN QPKMVDIGDK ETTERIALAS GRISMNKEAY DAIINHCVKK GPVLQTAIIA GIMGAKKTSE LIPMCHPIML NGVDIDILEE KETCSFKLYA RVKTQAKTGV EMEALMSVSI GLLTIYDMVK AIDKSMTISG VMLEHKSGGK SGDYNAKK // ID MOTA_HELPY Reviewed; 257 AA. AC P65410; P56426; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 70. DE RecName: Full=Motility protein A; DE AltName: Full=Chemotaxis protein MotA; GN Name=motA; OrderedLocusNames=HP_0815; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: MotA and MotB comprise the stator element of the CC flagellar motor complex. Required for rotation of the flagellar CC motor. Probable transmembrane proton channel (By similarity). CC {ECO:0000250}. CC -!- SUBUNIT: Each stator complex is composed of 4 MotA and 2 MotB CC subunits. 2 A subunits and 1 B subunit are thought to form a CC single ion channel, so that each stator complex contains two CC channels (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the MotA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07864.1; -; Genomic_DNA. DR PIR; G64621; G64621. DR RefSeq; NP_207608.1; NC_000915.1. DR RefSeq; WP_000366185.1; NC_018939.1. DR ProteinModelPortal; P65410; -. DR STRING; 85962.HP0815; -. DR PaxDb; P65410; -. DR PRIDE; P65410; -. DR EnsemblBacteria; AAD07864; AAD07864; HP_0815. DR GeneID; 899357; -. DR KEGG; heo:C694_04175; -. DR KEGG; hpy:HP0815; -. DR PATRIC; 20592917; VBIHelPyl33062_0847. DR eggNOG; ENOG4105E14; Bacteria. DR eggNOG; COG1291; LUCA. DR KO; K02556; -. DR OMA; KNGLSMA; -. DR OrthoDB; EOG61P6PS; -. DR BioCyc; HPY:HP0815-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR GO; GO:0097588; P:archaeal or bacterial-type flagellum-dependent cell motility; IEA:UniProtKB-KW. DR GO; GO:0006935; P:chemotaxis; IEA:UniProtKB-KW. DR GO; GO:0015992; P:proton transport; IEA:UniProtKB-KW. DR InterPro; IPR000540; Flag_MotA_CS. DR InterPro; IPR022522; Flagellar_motor_stator_MotA. DR InterPro; IPR002898; MotA_ExbB_proton_chnl. DR PANTHER; PTHR30433:SF3; PTHR30433:SF3; 1. DR Pfam; PF01618; MotA_ExbB; 1. DR PROSITE; PS01307; MOTA; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Chemotaxis; Complete proteome; KW Flagellar rotation; Hydrogen ion transport; Ion transport; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 257 Motility protein A. FT /FTId=PRO_0000189574. FT TRANSMEM 3 23 Helical. {ECO:0000255}. FT TRANSMEM 28 48 Helical. {ECO:0000255}. FT TRANSMEM 149 169 Helical. {ECO:0000255}. FT TRANSMEM 180 200 Helical. {ECO:0000255}. FT TOPO_DOM 201 257 Cytoplasmic. {ECO:0000255}. SQ SEQUENCE 257 AA; 27710 MW; 528CF6057F974B86 CRC64; MDLSTILGLV LAVASISLGD ILEDGNPLHI IHLSSVIIIV PTSLFAAMTG THARYVKAAY KEIKIVFLNP KINLNETIKN LVELATLARK DGVLSLEGRV AQIEDDFTRN GLSMIIDGKD LKSVKESLEI SIEEMEEYYH GAAHYWETAG ETAPTMGLVG AVMGLMLALQ KLDNPAEMAA GIAGAFTATV TGIMCSYAIF GPFGHKLKAK SKDIIKEKTV LLEGILGIAN GENPRDLENK LLNYIAPGEP KKSQFEG // ID MQO_HELPY Reviewed; 450 AA. AC O24913; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Malate:quinone oxidoreductase; DE EC=1.1.5.4; DE AltName: Full=MQO; DE AltName: Full=Malate dehydrogenase [quinone]; GN Name=mqo; OrderedLocusNames=HP_0086; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CHARACTERIZATION. RC STRAIN=ATCC 49503 / 60190; RX PubMed=10809701; DOI=10.1128/JB.182.11.3204-3209.2000; RA Kather B., Stingl K., van der Rest M.E., Altendorf K., Molenaar D.; RT "Another unusual type of citric acid cycle enzyme in Helicobacter RT pylori: the malate:quinone oxidoreductase."; RL J. Bacteriol. 182:3204-3209(2000). CC -!- FUNCTION: Catalyzes oxidation of malate to oxaloacetate in the CC citric acid cycle. Donates electrons to quinones of the electron CC transfer chain. CC -!- CATALYTIC ACTIVITY: (S)-malate + a quinone = oxaloacetate + CC reduced quinone. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Note=The FAD is tightly bound.; CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; CC oxaloacetate from (S)-malate (quinone route): step 1/1. CC -!- SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein. CC -!- SIMILARITY: Belongs to the MQO family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07155.1; -; Genomic_DNA. DR PIR; F64530; F64530. DR RefSeq; NP_206886.1; NC_000915.1. DR RefSeq; WP_000061441.1; NC_018939.1. DR ProteinModelPortal; O24913; -. DR STRING; 85962.HP0086; -. DR PaxDb; O24913; -. DR PRIDE; O24913; -. DR DNASU; 899112; -. DR EnsemblBacteria; AAD07155; AAD07155; HP_0086. DR GeneID; 899112; -. DR KEGG; heo:C694_00420; -. DR KEGG; hpy:HP0086; -. DR PATRIC; 20591381; VBIHelPyl33062_0091. DR eggNOG; ENOG4107RSR; Bacteria. DR eggNOG; COG0579; LUCA. DR KO; K00116; -. DR OMA; RKDWSTM; -. DR OrthoDB; EOG6X6R8Z; -. DR BioCyc; HPY:HP0086-MONOMER; -. DR BioCyc; MetaCyc:HP0086-MONOMER; -. DR BRENDA; 1.1.5.4; 2604. DR UniPathway; UPA00223; UER01008. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0052589; F:malate dehydrogenase (menaquinone) activity; IEA:UniProtKB-EC. DR GO; GO:0008924; F:malate dehydrogenase (quinone) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-HAMAP. DR Gene3D; 3.50.50.60; -; 1. DR HAMAP; MF_00212; MQO; 1. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR006231; MQO. DR Pfam; PF06039; Mqo; 1. DR SUPFAM; SSF51905; SSF51905; 1. PE 1: Evidence at protein level; KW Cell membrane; Complete proteome; FAD; Flavoprotein; Membrane; KW Oxidoreductase; Reference proteome; Tricarboxylic acid cycle. FT CHAIN 1 450 Malate:quinone oxidoreductase. FT /FTId=PRO_0000128717. SQ SEQUENCE 450 AA; 50713 MW; 5435E75D22E6E40B CRC64; MSMEFDAVII GGGVSGCATF YTLSEYSSLK RVAIVEKCSK LAQISSSAKA NSQTIHDGSI ETNYTPEKAK KVRLSAYKTR QYALNKGLQN EVIFETQKMA IGVGDEECEF MKKRYESFKE IFVGLEEFDK QKIKELEPNV ILGANGIDRH ENIIGHGYRK DWSTMNFAKL SENFVEEALK LKPNNQVFLN FKVKKIEKRN DTYAVISEDA EEVYAKFVLV NAGSYALPLA QSMGYGLDLG CLPVAGSFYF VPDLLRGKVY TVQNPKLPFA AVHGDPDAVI KGKTRIGPTA LTMPKLERNK CWLKGISLEL LKMDLNKDVF KIAFDLMSDK EIRNYVFKNM VFELPIIGKR KFLKDAQKII PSLSLEDLEY AHGFGEVRPQ VLDRTKRKLE LGEKKICTHK GITFNMTPSP GATSCLQNAL VDSQEIAAYL GESFELERFY KDLSPEELEN // ID MOAA_HELPY Reviewed; 321 AA. AC P56414; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Cyclic pyranopterin monophosphate synthase {ECO:0000255|HAMAP-Rule:MF_01225}; DE EC=4.1.99.18 {ECO:0000255|HAMAP-Rule:MF_01225}; DE AltName: Full=Molybdenum cofactor biosynthesis protein A {ECO:0000255|HAMAP-Rule:MF_01225}; GN Name=moaA {ECO:0000255|HAMAP-Rule:MF_01225}; GN OrderedLocusNames=HP_0768; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes, together with MoaC, the conversion of 5'-GTP CC to cyclic pyranopterin monophosphate (cPMP or molybdopterin CC precursor Z). {ECO:0000255|HAMAP-Rule:MF_01225}. CC -!- CATALYTIC ACTIVITY: GTP = cyclic pyranopterin phosphate + CC diphosphate. {ECO:0000255|HAMAP-Rule:MF_01225}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01225}; CC Note=Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster CC coordinated with 3 cysteines and an exchangeable S-adenosyl-L- CC methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and CC the GTP-derived substrate. {ECO:0000255|HAMAP-Rule:MF_01225}; CC -!- COFACTOR: CC Name=S-adenosyl-L-methionine; Xref=ChEBI:CHEBI:59789; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01225}; CC Note=Binds 1 S-adenosyl-L-methionine per subunit. CC {ECO:0000255|HAMAP-Rule:MF_01225}; CC -!- PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_01225}. CC -!- SUBUNIT: Monomer and homodimer. {ECO:0000255|HAMAP-Rule:MF_01225}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. MoaA family. CC {ECO:0000255|HAMAP-Rule:MF_01225}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07817.1; -; Genomic_DNA. DR PIR; H64615; H64615. DR RefSeq; NP_207561.1; NC_000915.1. DR RefSeq; WP_001863441.1; NC_018939.1. DR ProteinModelPortal; P56414; -. DR STRING; 85962.HP0768; -. DR PaxDb; P56414; -. DR PRIDE; P56414; -. DR EnsemblBacteria; AAD07817; AAD07817; HP_0768. DR GeneID; 899338; -. DR KEGG; heo:C694_03945; -. DR KEGG; hpy:HP0768; -. DR PATRIC; 20592825; VBIHelPyl33062_0801. DR eggNOG; ENOG4105CM1; Bacteria. DR eggNOG; COG2896; LUCA. DR KO; K03639; -. DR OMA; GWIHQIR; -. DR OrthoDB; EOG64XXNN; -. DR BioCyc; HPY:HP0768-MONOMER; -. DR UniPathway; UPA00344; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0019008; C:molybdopterin synthase complex; IEA:InterPro. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0061597; F:cyclic pyranopterin monophosphate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01225_B; MoaA_B; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR013483; MoaA. DR InterPro; IPR000385; MoaA_NifB_PqqE_Fe-S-bd_CS. DR InterPro; IPR010505; Mob_synth_C. DR InterPro; IPR007197; rSAM. DR Pfam; PF06463; Mob_synth_C; 1. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR02666; moaA; 1. DR PROSITE; PS01305; MOAA_NIFB_PQQE; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; GTP-binding; Iron; Iron-sulfur; Lyase; KW Metal-binding; Molybdenum cofactor biosynthesis; Nucleotide-binding; KW Reference proteome; S-adenosyl-L-methionine. FT CHAIN 1 321 Cyclic pyranopterin monophosphate FT synthase. FT /FTId=PRO_0000152967. FT REGION 254 256 GTP binding. {ECO:0000255|HAMAP- FT Rule:MF_01225}. FT METAL 21 21 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT METAL 25 25 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT METAL 28 28 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT METAL 249 249 Iron-sulfur 2 (4Fe-4S-substrate). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT METAL 252 252 Iron-sulfur 2 (4Fe-4S-substrate). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT METAL 266 266 Iron-sulfur 2 (4Fe-4S-substrate). FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 14 14 GTP. {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 27 27 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 64 64 GTP. {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 68 68 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_01225}. FT BINDING 95 95 GTP. {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 119 119 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 155 155 GTP. {ECO:0000255|HAMAP-Rule:MF_01225}. FT BINDING 189 189 S-adenosyl-L-methionine; via amide FT nitrogen and carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01225}. SQ SEQUENCE 321 AA; 36657 MW; 3308D812C8A6950C CRC64; MLVDSFNRVI DYIRVSVTKQ CNFRCQYCMP ATPLNFFDNE ELLPLDNVLE FLKIAIDEGV KKIRITGGEP LLRKGLDEFI AKLHAYNKEV ELVLSTNGFL LKKMAKDLKN AGLAQVNVSL DSLKSDRVLK ISQKDALKNT LEGIEESLKV GLKLKLNTVV IKSVNDDEIL ELLEYAKNRH IQIRYIEFME NTHAKSLVKG LKEREILDLI AQKYQIIEAE KPKQGSSKIY TLENGYQFGI IAPHSDDFCQ SCNRIRLASD GKICPCLYYQ DAIDAKEAII NKDTKNIKRL LKQSVINKPE KNMWNDKNSE TPTRAFYYTG G // ID MOBA_HELPY Reviewed; 201 AA. AC P56415; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Molybdenum cofactor guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; DE Short=MoCo guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; DE EC=2.7.7.77 {ECO:0000255|HAMAP-Rule:MF_00316}; DE AltName: Full=GTP:molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; DE AltName: Full=Mo-MPT guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; DE AltName: Full=Molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; DE AltName: Full=Molybdopterin-guanine dinucleotide synthase {ECO:0000255|HAMAP-Rule:MF_00316}; DE Short=MGD synthase {ECO:0000255|HAMAP-Rule:MF_00316}; GN Name=mobA {ECO:0000255|HAMAP-Rule:MF_00316}; GN OrderedLocusNames=HP_0769; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- CC MPT) cofactor (Moco or molybdenum cofactor) to form Mo- CC molybdopterin guanine dinucleotide (Mo-MGD) cofactor. CC {ECO:0000255|HAMAP-Rule:MF_00316}. CC -!- CATALYTIC ACTIVITY: GTP + molybdenum cofactor = diphosphate + CC guanylyl molybdenum cofactor. {ECO:0000255|HAMAP-Rule:MF_00316}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00316}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00316}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00316}. CC -!- DOMAIN: The N-terminal domain determines nucleotide recognition CC and specific binding, while the C-terminal domain determines the CC specific binding to the target protein. {ECO:0000255|HAMAP- CC Rule:MF_00316}. CC -!- SIMILARITY: Belongs to the MobA family. {ECO:0000255|HAMAP- CC Rule:MF_00316}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07818.1; -; Genomic_DNA. DR PIR; A64616; A64616. DR RefSeq; NP_207562.1; NC_000915.1. DR RefSeq; WP_000795288.1; NC_018939.1. DR ProteinModelPortal; P56415; -. DR DIP; DIP-3751N; -. DR IntAct; P56415; 2. DR MINT; MINT-179771; -. DR STRING; 85962.HP0769; -. DR PaxDb; P56415; -. DR PRIDE; P56415; -. DR EnsemblBacteria; AAD07818; AAD07818; HP_0769. DR GeneID; 898916; -. DR KEGG; heo:C694_03950; -. DR KEGG; hpy:HP0769; -. DR PATRIC; 20592827; VBIHelPyl33062_0802. DR eggNOG; ENOG41080AZ; Bacteria. DR eggNOG; COG0746; LUCA. DR KO; K03752; -. DR OMA; HYLISLW; -. DR OrthoDB; EOG6QZMQC; -. DR BioCyc; HPY:HP0769-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0061603; F:molybdenum cofactor guanylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR HAMAP; MF_00316; MobA; 1. DR InterPro; IPR025877; MobA-like_NTP_Trfase. DR InterPro; IPR013482; Molybde_CF_guanTrfase. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF12804; NTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Magnesium; Metal-binding; KW Molybdenum cofactor biosynthesis; Nucleotide-binding; KW Reference proteome; Transferase. FT CHAIN 1 201 Molybdenum cofactor guanylyltransferase. FT /FTId=PRO_0000134892. FT NP_BIND 14 16 GTP. {ECO:0000255|HAMAP-Rule:MF_00316}. FT METAL 104 104 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00316}. FT BINDING 31 31 GTP. {ECO:0000255|HAMAP-Rule:MF_00316}. FT BINDING 104 104 GTP. {ECO:0000255|HAMAP-Rule:MF_00316}. SQ SEQUENCE 201 AA; 23011 MW; 4C0E81822AB5DAAD CRC64; MKNPIIDNIP CVLLAGGKSS RFITNNIQTN KALMPLKSYS SLLEYQYTRL LKLFKKVIIS TKKSYELNAP YLLEKESDLF SPLFGIHNAF LTLQTPYIFF IPIDTPLVSF ESIKALCGIK NFSVTYAKSP TKEHYLISLW HQNTLNALIY ALKTQNYRLS DLVKNTSSVA INFDKEEEFL NLNTLKDYEL AVQILKKRAN G // ID MURC_HELPY Reviewed; 449 AA. AC O25340; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 111. DE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00046}; DE EC=6.3.2.8 {ECO:0000255|HAMAP-Rule:MF_00046}; DE AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000255|HAMAP-Rule:MF_00046}; GN Name=murC {ECO:0000255|HAMAP-Rule:MF_00046}; GN OrderedLocusNames=HP_0623; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. {ECO:0000255|HAMAP-Rule:MF_00046}. CC -!- CATALYTIC ACTIVITY: ATP + UDP-N-acetyl-alpha-D-muramate + L- CC alanine = ADP + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L- CC alanine. {ECO:0000255|HAMAP-Rule:MF_00046}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00046}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00046}. CC -!- SIMILARITY: Belongs to the MurCDEF family. {ECO:0000255|HAMAP- CC Rule:MF_00046}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07686.1; -; Genomic_DNA. DR PIR; G64597; G64597. DR RefSeq; NP_207417.1; NC_000915.1. DR RefSeq; WP_000894779.1; NC_018939.1. DR ProteinModelPortal; O25340; -. DR STRING; 85962.HP0623; -. DR PaxDb; O25340; -. DR PRIDE; O25340; -. DR EnsemblBacteria; AAD07686; AAD07686; HP_0623. DR GeneID; 900024; -. DR KEGG; heo:C694_03225; -. DR KEGG; hpy:HP0623; -. DR PATRIC; 20592529; VBIHelPyl33062_0653. DR eggNOG; ENOG4105DFU; Bacteria. DR eggNOG; COG0773; LUCA. DR KO; K01924; -. DR OMA; FHFIGIG; -. DR OrthoDB; EOG64BQ73; -. DR BioCyc; HPY:HP0623-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008763; F:UDP-N-acetylmuramate-L-alanine ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.40.1190.10; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.190.20; -; 1. DR HAMAP; MF_00046; MurC; 1. DR InterPro; IPR004101; Mur_ligase_C. DR InterPro; IPR013221; Mur_ligase_cen. DR InterPro; IPR000713; Mur_ligase_N. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR005758; UDP-N-AcMur_Ala_ligase_murC. DR Pfam; PF01225; Mur_ligase; 1. DR Pfam; PF02875; Mur_ligase_C; 1. DR Pfam; PF08245; Mur_ligase_M; 1. DR SUPFAM; SSF53244; SSF53244; 1. DR SUPFAM; SSF53623; SSF53623; 1. DR TIGRFAMs; TIGR01082; murC; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Peptidoglycan synthesis; KW Reference proteome. FT CHAIN 1 449 UDP-N-acetylmuramate--L-alanine ligase. FT /FTId=PRO_0000182102. FT NP_BIND 121 127 ATP. {ECO:0000255|HAMAP-Rule:MF_00046}. SQ SEQUENCE 449 AA; 50793 MW; 26F3C63ADE32C3FF CRC64; MLETPKVLLK NLQDCKIHFI GIGGIGISGL AKYLKAQGAT ISGSDIAISP SVKYLKALGV EINIPHDPKA INNQDVIIHS AIIKEDNKEI QRAKELEIPI LSRKDALYSI LKDKRVFSVC GAHGKSSITA MLSAICPSFG AIIGAHSKEF DSNVRESAND SLVFEADESD SSFLFSNPYA AIVPNTEPEH LEHYGHDLER FFFAYEYFLD HAQKRVIYKE DPFLKNYSKN AIVLEKKDIY NIQYILKDGE PYTSFELKDL GAFLVWGLGE HNATNASLAI LSALDELHLE EIRNNLLNFK GIKKRFDILQ KNALILIDDY AHHPTEISAT LKSARIYANL LNTQEKIIVI WQAHKYSRLM DNLEEFKKCF SEHCDRLIIL PVYSASEVKR DIDLKAHFKH YNPTFIDRVR KKGDFLELLV NDNVVETIEK GFVIGFGAGD ITYQLRGEM // ID MURB_HELPY Reviewed; 259 AA. AC O25963; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; DE EC=1.3.1.98; DE AltName: Full=UDP-N-acetylmuramate dehydrogenase; GN Name=murB; OrderedLocusNames=HP_1418; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: UDP-N-acetyl-alpha-D-muramate + NADP(+) = UDP- CC N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine + NADPH. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; Evidence={ECO:0000250}; CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the MurB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08460.1; -; Genomic_DNA. DR PIR; B64697; B64697. DR RefSeq; NP_208209.1; NC_000915.1. DR RefSeq; WP_000894903.1; NC_018939.1. DR ProteinModelPortal; O25963; -. DR STRING; 85962.HP1418; -. DR PaxDb; O25963; -. DR PRIDE; O25963; -. DR EnsemblBacteria; AAD08460; AAD08460; HP_1418. DR GeneID; 899877; -. DR KEGG; heo:C694_07335; -. DR KEGG; hpy:HP1418; -. DR PATRIC; 20594235; VBIHelPyl33062_1487. DR eggNOG; ENOG4105D4A; Bacteria. DR eggNOG; COG0812; LUCA. DR KO; K00075; -. DR OMA; IAPSAKN; -. DR OrthoDB; EOG60CWQ3; -. DR BioCyc; HPY:HP1418-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0008762; F:UDP-N-acetylmuramate dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.30.465.10; -; 1. DR Gene3D; 3.90.78.10; -; 1. DR HAMAP; MF_00037; MurB; 1. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR003170; MurB. DR InterPro; IPR011601; MurB_C. DR PANTHER; PTHR21071; PTHR21071; 1. DR Pfam; PF02873; MurB_C; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR SUPFAM; SSF56194; SSF56194; 1. DR TIGRFAMs; TIGR00179; murB; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; FAD; KW Flavoprotein; NADP; Oxidoreductase; Peptidoglycan synthesis; KW Reference proteome. FT CHAIN 1 259 UDP-N-acetylenolpyruvoylglucosamine FT reductase. FT /FTId=PRO_0000179218. FT ACT_SITE 142 142 {ECO:0000250}. FT ACT_SITE 184 184 Proton donor. {ECO:0000250}. FT ACT_SITE 254 254 {ECO:0000250}. SQ SEQUENCE 259 AA; 28592 MW; 9C0B4621DF39F01D CRC64; MLETTIDFSR YSSVKIGTPL KVSVLENDDE ISQEHQIIGL ANNLLIAPSA KNLALLGKNY DYICDKGECV EIGGAANASK IFNYFRANDL EGLEFLGQLP GTLGALVKMN AGMKEFEIKN VLESACINNQ WLEKEALGLG YRSSGFSGVV LRARFKKTHG FREGVLKACQ SMRKSHPKLP NFGSCFKNPP NDHAGRLLEG VGLRGYCLKR VGFAKEHANF LVNLGGAEFE EALDLIELAK ARVLQEYGIH LEEEVKILR // ID MURI_HELPY Reviewed; 255 AA. AC P56068; P94841; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 16-MAR-2016, entry version 107. DE RecName: Full=Glutamate racemase {ECO:0000255|HAMAP-Rule:MF_00258}; DE EC=5.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00258}; GN Name=murI {ECO:0000255|HAMAP-Rule:MF_00258}; Synonyms=glr; GN OrderedLocusNames=HP_0549; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8962108; DOI=10.1073/pnas.93.25.14648; RA Censini S., Lange C., Xiang Z., Crabtree J., Ghiara P., Borodovsky M., RA Rappuoli R., Covacci A.; RT "cag, a pathogenicity island of Helicobacter pylori, encodes type I- RT specific and disease-associated virulence factors."; RL Proc. Natl. Acad. Sci. U.S.A. 93:14648-14653(1996). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Provides the (R)-glutamate required for cell wall CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_00258}. CC -!- CATALYTIC ACTIVITY: L-glutamate = D-glutamate. {ECO:0000255|HAMAP- CC Rule:MF_00258}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00258}. CC -!- SIMILARITY: Belongs to the aspartate/glutamate racemases family. CC {ECO:0000255|HAMAP-Rule:MF_00258}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF282853; AAC44708.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07615.1; -; Genomic_DNA. DR PIR; E64588; E64588. DR RefSeq; NP_207344.1; NC_000915.1. DR RefSeq; WP_000690349.1; NC_018939.1. DR ProteinModelPortal; P56068; -. DR SMR; P56068; 1-255. DR IntAct; P56068; 1. DR STRING; 85962.HP0549; -. DR BindingDB; P56068; -. DR ChEMBL; CHEMBL6078; -. DR PaxDb; P56068; -. DR PRIDE; P56068; -. DR EnsemblBacteria; AAD07615; AAD07615; HP_0549. DR GeneID; 900031; -. DR KEGG; heo:C694_02840; -. DR KEGG; hpy:HP0549; -. DR PATRIC; 20592373; VBIHelPyl33062_0575. DR eggNOG; ENOG4105F03; Bacteria. DR eggNOG; COG0796; LUCA. DR KO; K01776; -. DR OMA; LDFFKPH; -. DR OrthoDB; EOG6CZQQP; -. DR BioCyc; HPY:HP0549-MONOMER; -. DR SABIO-RK; P56068; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008881; F:glutamate racemase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1860; -; 2. DR HAMAP; MF_00258; Glu_racemase; 1. DR InterPro; IPR015942; Asp/Glu/hydantoin_racemase. DR InterPro; IPR001920; Asp/Glu_race. DR InterPro; IPR018187; Asp/Glu_racemase_AS_1. DR InterPro; IPR033134; Asp/Glu_racemase_AS_2. DR InterPro; IPR004391; Glu_race. DR Pfam; PF01177; Asp_Glu_race; 1. DR SUPFAM; SSF53681; SSF53681; 2. DR TIGRFAMs; TIGR00067; glut_race; 1. DR PROSITE; PS00923; ASP_GLU_RACEMASE_1; 1. DR PROSITE; PS00924; ASP_GLU_RACEMASE_2; 1. PE 3: Inferred from homology; KW Cell shape; Cell wall biogenesis/degradation; Complete proteome; KW Isomerase; Peptidoglycan synthesis; Reference proteome. FT CHAIN 1 255 Glutamate racemase. FT /FTId=PRO_0000095476. FT REGION 7 8 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00258}. FT REGION 39 40 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00258}. FT REGION 71 72 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00258}. FT REGION 182 183 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00258}. FT ACT_SITE 70 70 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00258}. FT ACT_SITE 181 181 Proton donor/acceptor. FT {ECO:0000255|HAMAP-Rule:MF_00258}. FT CONFLICT 64 64 K -> E (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 89 89 V -> I (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 171 171 E -> K (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 177 177 V -> I (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 216 216 E -> G (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 221 221 N -> K (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 229 229 C -> H (in Ref. 1; AAC44708). FT {ECO:0000305}. FT CONFLICT 243 243 V -> I (in Ref. 1; AAC44708). FT {ECO:0000305}. SQ SEQUENCE 255 AA; 28413 MW; 7DC46DE96D9709E8 CRC64; MKIGVFDSGV GGFSVLKSLL KAQLFDEIIY YGDSARVPYG TKDPTTIKQF GLEALDFFKP HQIKLLIVAC NTASALALEE MQKHSKIPVV GVIEPSILAI KRQVKDKNAP ILVLGTKATI QSNAYDNALK QQGYLNVSHL ATSLFVPLIE ESILEGELLE TCMRYYFTPL EILPEVVILG CTHFPLIAQK IEGYFMEHFA LSTPPLLIHS GDAIVEYLQQ NYALKKNACA FPKVEFHASG DVVWLEKQAK EWLKL // ID MURJ_HELPY Reviewed; 461 AA. AC O25551; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Putative lipid II flippase MurJ; GN Name=murJ; Synonyms=mviN; OrderedLocusNames=HP_0885; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in peptidoglycan biosynthesis. Transports CC lipid-linked peptidoglycan precursors from the inner to the outer CC leaflet of the cytoplasmic membrane (By similarity). CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the MurJ/MviN family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07933.1; -; Genomic_DNA. DR PIR; E64630; E64630. DR RefSeq; NP_207678.1; NC_000915.1. DR RefSeq; WP_010875557.1; NC_000915.1. DR ProteinModelPortal; O25551; -. DR STRING; 85962.HP0885; -. DR PaxDb; O25551; -. DR PRIDE; O25551; -. DR EnsemblBacteria; AAD07933; AAD07933; HP_0885. DR GeneID; 899413; -. DR KEGG; hpy:HP0885; -. DR PATRIC; 20593059; VBIHelPyl33062_0917. DR eggNOG; ENOG4105CJR; Bacteria. DR eggNOG; COG0728; LUCA. DR KO; K03980; -. DR OMA; IFAEGSF; -. DR OrthoDB; EOG6C0131; -. DR BioCyc; HPY:HP0885-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR004268; MurJ. DR Pfam; PF03023; MVIN; 1. DR PRINTS; PR01806; VIRFACTRMVIN. DR TIGRFAMs; TIGR01695; murJ_mviN; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Membrane; KW Peptidoglycan synthesis; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 461 Putative lipid II flippase MurJ. FT /FTId=PRO_0000182009. FT TRANSMEM 5 25 Helical. {ECO:0000255}. FT TRANSMEM 51 71 Helical. {ECO:0000255}. FT TRANSMEM 96 116 Helical. {ECO:0000255}. FT TRANSMEM 123 143 Helical. {ECO:0000255}. FT TRANSMEM 156 176 Helical. {ECO:0000255}. FT TRANSMEM 229 249 Helical. {ECO:0000255}. FT TRANSMEM 259 279 Helical. {ECO:0000255}. FT TRANSMEM 294 314 Helical. {ECO:0000255}. FT TRANSMEM 337 357 Helical. {ECO:0000255}. FT TRANSMEM 372 392 Helical. {ECO:0000255}. FT TRANSMEM 402 422 Helical. {ECO:0000255}. FT TRANSMEM 429 449 Helical. {ECO:0000255}. SQ SEQUENCE 461 AA; 51619 MW; 62B7DA434967A46C CRC64; MMANILGAGV YSDIFFVAFK LPNLFRRIFA EGSFSQSFLP SFIRSSIKGS FASLVGLIFC IVLFMWCLLV ALNPLWLAKL LAYGFDEETL KLCAPIVAIN FWYLLLVFIT TFLGALLQYK HSFFASAYSA SLLNVCMILA LLISKEKTHL EALYYLSYGV LLGGVAQILL HFYPLVKLGL LNLLWKGFLS FKTKNAAKKK YRSKRIKRDL KGFFKQFLPS VLGNSSAQIA SFLDTTIASF LASGSVSYLY YANRVFQLPL ALFAIAISTA LFPSIAIALK NNQQDLILQR LQKAWFFLVG VLLLCSIGGI MLSKEITELL FERGQFSPKD TLITSQVFSL YLLGLLPFGL TKLFSLWLYA KLEQKKAAKI SLISLFLGLA ASLSLMPLLG VLGLALANSL SGLFLFVLTI KAFGFQLFLG IIKNLKSWLV ILFLACVEIL LLLAFKSWVT HLYLFYYFQG F // ID MURD_HELPY Reviewed; 422 AA. AC O25236; DT 30-APR-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 108. DE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000255|HAMAP-Rule:MF_00639}; DE EC=6.3.2.9 {ECO:0000255|HAMAP-Rule:MF_00639}; DE AltName: Full=D-glutamic acid-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00639}; DE AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000255|HAMAP-Rule:MF_00639}; GN Name=murD {ECO:0000255|HAMAP-Rule:MF_00639}; GN OrderedLocusNames=HP_0494; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. Catalyzes the addition of glutamate CC to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). CC {ECO:0000255|HAMAP-Rule:MF_00639}. CC -!- CATALYTIC ACTIVITY: ATP + UDP-N-acetyl-alpha-D-muramoyl-L-alanine CC + D-glutamate = ADP + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L- CC alanyl-D-glutamate. {ECO:0000255|HAMAP-Rule:MF_00639}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00639}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00639}. CC -!- SIMILARITY: Belongs to the MurCDEF family. {ECO:0000255|HAMAP- CC Rule:MF_00639}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07560.1; -; Genomic_DNA. DR PIR; F64581; F64581. DR RefSeq; NP_207291.1; NC_000915.1. DR RefSeq; WP_000703484.1; NC_018939.1. DR ProteinModelPortal; O25236; -. DR DIP; DIP-3766N; -. DR IntAct; O25236; 2. DR MINT; MINT-182231; -. DR STRING; 85962.HP0494; -. DR PaxDb; O25236; -. DR PRIDE; O25236; -. DR EnsemblBacteria; AAD07560; AAD07560; HP_0494. DR GeneID; 898752; -. DR KEGG; heo:C694_02540; -. DR KEGG; hpy:HP0494; -. DR PATRIC; 20592263; VBIHelPyl33062_0520. DR eggNOG; ENOG4105DMZ; Bacteria. DR eggNOG; COG0771; LUCA. DR KO; K01925; -. DR OMA; SHKMEEF; -. DR OrthoDB; EOG6PKFCR; -. DR BioCyc; HPY:HP0494-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004326; F:tetrahydrofolylpolyglutamate synthase activity; IEA:InterPro. DR GO; GO:0008764; F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.40.1190.10; -; 1. DR Gene3D; 3.90.190.20; -; 1. DR HAMAP; MF_00639; MurD; 1. DR InterPro; IPR018109; Folylpolyglutamate_synth_CS. DR InterPro; IPR004101; Mur_ligase_C. DR InterPro; IPR013221; Mur_ligase_cen. DR InterPro; IPR005762; UDP-N-AcMur-Glu_ligase. DR Pfam; PF02875; Mur_ligase_C; 1. DR Pfam; PF08245; Mur_ligase_M; 1. DR SUPFAM; SSF53244; SSF53244; 1. DR SUPFAM; SSF53623; SSF53623; 1. DR TIGRFAMs; TIGR01087; murD; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Peptidoglycan synthesis; KW Reference proteome. FT CHAIN 1 422 UDP-N-acetylmuramoylalanine--D-glutamate FT ligase. FT /FTId=PRO_0000109025. FT NP_BIND 102 108 ATP. {ECO:0000255|HAMAP-Rule:MF_00639}. SQ SEQUENCE 422 AA; 47998 MW; 81AD1DBAFD949E76 CRC64; MKISLLGHGK TTLALGRFFK KNHNEVKFFD DKFLSSFKDS EGFLCYPSKD FNPNDSQLEI VSPGISFTHP LVIKAKHLVS EYDYINSLFD LVFTPTIISI SGTNGKTTTT EMLTMLLEDF KAVSGGNIGT PLIELFEKRS PLWVLETSSF SLHYTNKAYP LIYLLINIEA DHLTWHCNFE NYLNAKLKVL TLMPKTSLAI LPLKFKEHPI IQNSQAQKIF FDKSEEVLER LKIPSNALFF KGAFLLDAAL ALLVYEQFLK IKNLKWQDYR ENALKRLNAF KIGSHKMEEF RDKQGRLWVD DSKATNIDAT LQALKTFKNQ KIHLILGGDI KGVNLTPLFE EFKNYKISLY AIGSSAFIIQ ALALEFNVSC QVCLELEKAV QEIKSVLSQN EIALLSPSAA SLDQFSSYKE RGEKFKAFVL KD // ID MURE_HELPY Reviewed; 447 AA. AC O26027; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 114. DE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000255|HAMAP-Rule:MF_00208}; DE EC=6.3.2.13 {ECO:0000255|HAMAP-Rule:MF_00208}; DE AltName: Full=Meso-A2pm-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00208}; DE AltName: Full=Meso-diaminopimelate-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00208}; DE AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000255|HAMAP-Rule:MF_00208}; DE AltName: Full=UDP-MurNAc-tripeptide synthetase {ECO:0000255|HAMAP-Rule:MF_00208}; DE AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000255|HAMAP-Rule:MF_00208}; GN Name=murE {ECO:0000255|HAMAP-Rule:MF_00208}; GN OrderedLocusNames=HP_1494; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the addition of meso-diaminopimelic acid to CC the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate CC (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. CC {ECO:0000255|HAMAP-Rule:MF_00208}. CC -!- CATALYTIC ACTIVITY: ATP + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl- CC D-glutamate + meso-2,6-diaminoheptanedioate = ADP + phosphate + CC UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6- CC diaminoheptanedioate. {ECO:0000255|HAMAP-Rule:MF_00208}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00208}; CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00208}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00208}. CC -!- PTM: Carbamoylation is probably crucial for Mg(2+) binding and, CC consequently, for the gamma-phosphate positioning of ATP. CC {ECO:0000255|HAMAP-Rule:MF_00208}. CC -!- SIMILARITY: Belongs to the MurCDEF family. MurE subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00208}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08535.1; -; Genomic_DNA. DR PIR; F64706; F64706. DR RefSeq; NP_208285.1; NC_000915.1. DR RefSeq; WP_000768790.1; NC_018939.1. DR ProteinModelPortal; O26027; -. DR IntAct; O26027; 1. DR STRING; 85962.HP1494; -. DR PaxDb; O26027; -. DR PRIDE; O26027; -. DR EnsemblBacteria; AAD08535; AAD08535; HP_1494. DR GeneID; 899798; -. DR KEGG; heo:C694_07740; -. DR KEGG; hpy:HP1494; -. DR PATRIC; 20594399; VBIHelPyl33062_1568. DR eggNOG; ENOG4107EEN; Bacteria. DR eggNOG; COG0769; LUCA. DR KO; K01928; -. DR OMA; MAFYDYP; -. DR OrthoDB; EOG6PKFCR; -. DR BioCyc; HPY:HP1494-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004326; F:tetrahydrofolylpolyglutamate synthase activity; IEA:InterPro. DR GO; GO:0008765; F:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity; IEA:UniProtKB-EC. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR Gene3D; 3.40.1190.10; -; 1. DR Gene3D; 3.90.190.20; -; 1. DR HAMAP; MF_00208; MurE; 1. DR InterPro; IPR018109; Folylpolyglutamate_synth_CS. DR InterPro; IPR004101; Mur_ligase_C. DR InterPro; IPR013221; Mur_ligase_cen. DR InterPro; IPR005761; UDP-N-AcMur-Glu-dNH2Pim_ligase. DR Pfam; PF02875; Mur_ligase_C; 1. DR Pfam; PF08245; Mur_ligase_M; 1. DR SUPFAM; SSF53244; SSF53244; 1. DR SUPFAM; SSF53623; SSF53623; 1. DR TIGRFAMs; TIGR01085; murE; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Nucleotide-binding; Peptidoglycan synthesis; KW Reference proteome. FT CHAIN 1 447 UDP-N-acetylmuramoyl-L-alanyl-D- FT glutamate--2,6-diaminopimelate ligase. FT /FTId=PRO_0000101902. FT NP_BIND 74 80 ATP. {ECO:0000255|HAMAP-Rule:MF_00208}. FT REGION 117 118 UDP-MurNAc-L-Ala-D-Glu binding. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT REGION 364 367 Meso-diaminopimelate binding. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT MOTIF 364 367 Meso-diaminopimelate recognition motif. FT BINDING 21 21 UDP-MurNAc-L-Ala-D-Glu. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT BINDING 144 144 UDP-MurNAc-L-Ala-D-Glu. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT BINDING 150 150 UDP-MurNAc-L-Ala-D-Glu. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT BINDING 152 152 UDP-MurNAc-L-Ala-D-Glu. FT {ECO:0000255|HAMAP-Rule:MF_00208}. FT BINDING 340 340 Meso-diaminopimelate. {ECO:0000255|HAMAP- FT Rule:MF_00208}. FT BINDING 415 415 Meso-diaminopimelate; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00208}. FT BINDING 419 419 Meso-diaminopimelate. {ECO:0000255|HAMAP- FT Rule:MF_00208}. FT MOD_RES 184 184 N6-carboxylysine. {ECO:0000255|HAMAP- FT Rule:MF_00208}. SQ SEQUENCE 447 AA; 50858 MW; 296349E8FE90AD34 CRC64; MKLKKTLTYQ NHTYSFLSDN THEVLENPKE ILFVKTPLNE KYSHLIAEKN LAILDFNELK NYFDFKIKIV GITGTNGKTT TASLMYSLLL DLNKKTALLG TRGFFINNER IKEKGLTTPT LLELYSDLEE AVRLKCEYFI MEVSSHAIVQ KRIAGLDFAL KILTNITSDH LDFHQSIENY RDAKNSFFKD EGLKVINRDE TNALFNPVNA HTYALDKKAH LNVQAFSLNP SISASLCYQQ DLRDPNFKEI ALMHSPLLGR YNLYNILAGV LGVKLLTQLP LETIVPLLEN FYGVKGRLEI VHSKPLVVVD FAHTIDGMQQ VFESFKNQKI TALFGAGGDR DKTKRPEMGA IASYYAHKII LTSDNPRSEN EEDIIKDILK GINDSSKVIV EKDRKKAILN ALENLKDDEV LLILGKGDEN IQIFKDKTIF FSDQEVVKSY YQHLKQG // ID MURG_HELPY Reviewed; 353 AA. AC O25770; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 109. DE RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000255|HAMAP-Rule:MF_00033}; DE EC=2.4.1.227 {ECO:0000255|HAMAP-Rule:MF_00033}; DE AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000255|HAMAP-Rule:MF_00033}; GN Name=murG {ECO:0000255|HAMAP-Rule:MF_00033}; GN OrderedLocusNames=HP_1155; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. Catalyzes the transfer of a GlcNAc CC subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid CC intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- CC (pentapeptide)GlcNAc (lipid intermediate II). {ECO:0000255|HAMAP- CC Rule:MF_00033}. CC -!- CATALYTIC ACTIVITY: UDP-N-acetylglucosamine + Mur2Ac(oyl-L-Ala- CC gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol = UDP + CC GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)- CC diphosphoundecaprenol. {ECO:0000255|HAMAP-Rule:MF_00033}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00033}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00033}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00033}. CC -!- SIMILARITY: Belongs to the glycosyltransferase 28 family. MurG CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08196.1; -; Genomic_DNA. DR PIR; C64664; C64664. DR RefSeq; NP_207946.1; NC_000915.1. DR RefSeq; WP_000666573.1; NC_018939.1. DR ProteinModelPortal; O25770; -. DR STRING; 85962.HP1155; -. DR CAZy; GT28; Glycosyltransferase Family 28. DR PaxDb; O25770; -. DR PRIDE; O25770; -. DR EnsemblBacteria; AAD08196; AAD08196; HP_1155. DR GeneID; 899915; -. DR KEGG; heo:C694_05965; -. DR KEGG; hpy:HP1155; -. DR PATRIC; 20593661; VBIHelPyl33062_1209. DR eggNOG; ENOG4105DVQ; Bacteria. DR eggNOG; COG0707; LUCA. DR KO; K02563; -. DR OMA; FTDPFKV; -. DR OrthoDB; EOG61VZFD; -. DR BioCyc; HPY:HP1155-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051991; F:UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity; IEA:UniProtKB-EC. DR GO; GO:0050511; F:undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0030259; P:lipid glycosylation; IEA:UniProtKB-HAMAP. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR HAMAP; MF_00033; MurG; 1. DR InterPro; IPR006009; GlcNAc_MurG. DR InterPro; IPR007235; Glyco_trans_28_C. DR InterPro; IPR004276; GlycoTrans_28_N. DR Pfam; PF04101; Glyco_tran_28_C; 1. DR Pfam; PF03033; Glyco_transf_28; 1. DR TIGRFAMs; TIGR01133; murG; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell inner membrane; Cell membrane; KW Cell shape; Cell wall biogenesis/degradation; Complete proteome; KW Glycosyltransferase; Membrane; Peptidoglycan synthesis; KW Reference proteome; Transferase. FT CHAIN 1 353 UDP-N-acetylglucosamine--N-acetylmuramyl- FT (pentapeptide) pyrophosphoryl- FT undecaprenol N-acetylglucosamine FT transferase. FT /FTId=PRO_0000109179. SQ SEQUENCE 353 AA; 39474 MW; 6D136CD92A180513 CRC64; MKFALTGGGT GGHLSIAKAL AIELEKQGIE AIYLGSTYGQ DKEWFENSPL FSERYFFNTQ GVVNKSFFKK IGSLFLQAKA AFKAKEILKK HQITHTISVG GFSAGPASFA SLLNKIPLYI HEQNAIKGSL NRYLSPKAKA VFSSYAFKDK GNHVLTSYPV QNAFFDFART RTEIKHILFL GGSQGAKAIN EFALLNAPKL TKQGIKITHI CGPNSYEQVR FFYQELGLLD KIELFAFHNN ITEIMHRADL CVSRAGASSV WELCANGLPT IFIPYPFASN NHQYYNVLEF EKENLCYVVP QNELLPKKLF EVIRKLNQKD DQGNKNLTTI SNQLQQKIAK DGAKTIIETI LSA // ID MURA_HELPY Reviewed; 422 AA. AC P56189; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00111}; DE EC=2.5.1.7 {ECO:0000255|HAMAP-Rule:MF_00111}; DE AltName: Full=Enoylpyruvate transferase {ECO:0000255|HAMAP-Rule:MF_00111}; DE AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000255|HAMAP-Rule:MF_00111}; DE Short=EPT {ECO:0000255|HAMAP-Rule:MF_00111}; GN Name=murA {ECO:0000255|HAMAP-Rule:MF_00111}; Synonyms=murZ; GN OrderedLocusNames=HP_0648; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cell wall formation. Adds enolpyruvyl to UDP-N- CC acetylglucosamine. {ECO:0000255|HAMAP-Rule:MF_00111}. CC -!- CATALYTIC ACTIVITY: Phosphoenolpyruvate + UDP-N-acetyl-alpha-D- CC glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha- CC D-glucosamine. {ECO:0000255|HAMAP-Rule:MF_00111}. CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00111}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00111}. CC -!- SIMILARITY: Belongs to the EPSP synthase family. MurA subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00111}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07708.1; -; Genomic_DNA. DR PIR; H64600; H64600. DR RefSeq; NP_207442.1; NC_000915.1. DR RefSeq; WP_000346467.1; NC_018939.1. DR ProteinModelPortal; P56189; -. DR STRING; 85962.HP0648; -. DR PaxDb; P56189; -. DR PRIDE; P56189; -. DR EnsemblBacteria; AAD07708; AAD07708; HP_0648. DR GeneID; 899033; -. DR KEGG; heo:C694_03350; -. DR KEGG; hpy:HP0648; -. DR PATRIC; 20592581; VBIHelPyl33062_0679. DR eggNOG; ENOG4105CDF; Bacteria. DR eggNOG; COG0766; LUCA. DR KO; K00790; -. DR OMA; IRTAPHP; -. DR OrthoDB; EOG68M4GK; -. DR BioCyc; HPY:HP0648-MONOMER; -. DR UniPathway; UPA00219; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008760; F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR GO; GO:0019277; P:UDP-N-acetylgalactosamine biosynthetic process; IEA:InterPro. DR Gene3D; 3.65.10.10; -; 2. DR HAMAP; MF_00111; MurA; 1. DR InterPro; IPR001986; Enolpyruvate_Tfrase_dom. DR InterPro; IPR013792; RNA3'P_cycl/enolpyr_Trfase_a/b. DR InterPro; IPR005750; UDP_GlcNAc_COvinyl_MurA. DR Pfam; PF00275; EPSP_synthase; 1. DR SUPFAM; SSF55205; SSF55205; 1. DR TIGRFAMs; TIGR01072; murA; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Cell shape; KW Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; KW Peptidoglycan synthesis; Pyruvate; Reference proteome; Transferase. FT CHAIN 1 422 UDP-N-acetylglucosamine 1- FT carboxyvinyltransferase. FT /FTId=PRO_0000178877. FT ACT_SITE 117 117 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00111}. FT MOD_RES 117 117 2-(S-cysteinyl)pyruvic acid O- FT phosphothioketal. {ECO:0000255|HAMAP- FT Rule:MF_00111}. SQ SEQUENCE 422 AA; 45657 MW; BC58A765A4F12362 CRC64; MDFLEIVGQV PLKGEVEISG AKNSALPILA ATLLSRQEVK IKSLPQVVDI KAMALLLQNL GASLEWLNPN TLQIGAKSLN HTEATYDLVR KMRASILVLG PLLARFKECL VSLPGGCAIG ARPVDLHLKA MQQLGAKITI EQGYIHAKAP KGLKGNDILF DKISVTGTEN ALMAASLAKG ITRIINAAKE PEIAQLCAFL QSGGVEIHGI GSSELKIRGV ENDALNLKDI QIIPDRIEAG TYLCVGAITN SQLKINHIIP NHLQAITDKL IEIGFSLDIQ ENSIEIHPAK KRQAFEITTK EYPGFPTDMQ AQFMALATQC LGTSVIEETL FENRFMHASE LQRLGANISL KTNVATISGS TELTGSDVMA TDLRASSALV LAALVAKGVS RVHRIYHLDR GYERLEDKIN ALGAKVARLK EK // ID NADA_HELPY Reviewed; 336 AA. AC O25910; DT 25-OCT-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Quinolinate synthase A {ECO:0000255|HAMAP-Rule:MF_00569}; DE EC=2.5.1.72 {ECO:0000255|HAMAP-Rule:MF_00569}; GN Name=nadA {ECO:0000255|HAMAP-Rule:MF_00569}; GN OrderedLocusNames=HP_1356; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the condensation of iminoaspartate with CC dihydroxyacetone phosphate to form quinolinate. CC {ECO:0000255|HAMAP-Rule:MF_00569}. CC -!- CATALYTIC ACTIVITY: Glycerone phosphate + iminosuccinate = CC pyridine-2,3-dicarboxylate + 2 H(2)O + phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00569}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00569}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00569}; CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate CC from iminoaspartate: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00569}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00569}. CC -!- SIMILARITY: Belongs to the quinolinate synthase A family. Type 3 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00569}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08398.1; -; Genomic_DNA. DR PIR; D64689; D64689. DR RefSeq; NP_208148.1; NC_000915.1. DR RefSeq; WP_001141770.1; NC_018939.1. DR ProteinModelPortal; O25910; -. DR DIP; DIP-3397N; -. DR IntAct; O25910; 1. DR MINT; MINT-168022; -. DR STRING; 85962.HP1356; -. DR PaxDb; O25910; -. DR PRIDE; O25910; -. DR DNASU; 900347; -. DR EnsemblBacteria; AAD08398; AAD08398; HP_1356. DR GeneID; 900347; -. DR KEGG; heo:C694_07000; -. DR KEGG; hpy:HP1356; -. DR PATRIC; 20594099; VBIHelPyl33062_1420. DR eggNOG; ENOG4105D0I; Bacteria. DR eggNOG; COG0379; LUCA. DR KO; K03517; -. DR OMA; DKCLGEN; -. DR OrthoDB; EOG6DJZ56; -. DR BioCyc; HPY:HP1356-MONOMER; -. DR UniPathway; UPA00253; UER00327. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008987; F:quinolinate synthetase A activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00569; NadA_type3; 1. DR InterPro; IPR003473; NadA. DR InterPro; IPR023515; Quinolinate_synth_A_type3. DR Pfam; PF02445; NadA; 1. DR TIGRFAMs; TIGR00550; nadA; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; KW Metal-binding; Pyridine nucleotide biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 336 Quinolinate synthase A. FT /FTId=PRO_0000155818. FT BINDING 25 25 Iminoaspartate. {ECO:0000255|HAMAP- FT Rule:MF_00569}. FT BINDING 42 42 Iminoaspartate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00569}. FT BINDING 117 117 Iminoaspartate. {ECO:0000255|HAMAP- FT Rule:MF_00569}. FT BINDING 138 138 Iminoaspartate. {ECO:0000255|HAMAP- FT Rule:MF_00569}. FT BINDING 224 224 Iminoaspartate. {ECO:0000255|HAMAP- FT Rule:MF_00569}. FT BINDING 241 241 Iminoaspartate. {ECO:0000255|HAMAP- FT Rule:MF_00569}. SQ SEQUENCE 336 AA; 37813 MW; 963569A848239C4F CRC64; MPTDNDLKAA ILELLRDLDV LLVAHFYQKD EIVELAHYTG DSLELAKIAS QSDKNLIVFC GVHFMGESVK ALAFDKQVIM PKLSCCSMAR MIDSHYYDRS VHLLKECGVK EFYPITYINS NAEVKAKVAK DDGVVCTSRN ASKIFNHALK QNKKIFFLPD KCLGENLALE NGLKSAILGA NSQEEIKNAD VVCYNGFCSV HQLFKLEDIE FYRQKYPDIL IAVHPECEPS VVSNADFSGS TSQIIEFVEK LSPNQKVAIG TESHLVNRLK AKRHHQNTFI LSSTLALCPT MNETTLKDLF EVLKAYKNHR AYNTIELKDE VARLAKLALT KMMELS // ID NADC_HELPY Reviewed; 273 AA. AC O25909; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]; DE EC=2.4.2.19; DE AltName: Full=Quinolinate phosphoribosyltransferase [decarboxylating]; DE Short=QAPRTase; GN Name=nadC; OrderedLocusNames=HP_1355; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) IN COMPLEX WITH SUBSTRATE, AND RP SUBUNIT. RX PubMed=16419067; DOI=10.1002/prot.20834; RA Kim M.-K., Im Y.J., Lee J.H., Eom S.H.; RT "Crystal structure of quinolinic acid phosphoribosyltransferase from RT Helicobacter pylori."; RL Proteins 63:252-255(2006). CC -!- FUNCTION: Involved in the catabolism of quinolinic acid (QA). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Beta-nicotinate D-ribonucleotide + diphosphate CC + CO(2) = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1- CC diphosphate. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D- CC ribonucleotide from quinolinate: step 1/1. CC -!- SUBUNIT: Hexamer formed by 3 homodimers. CC {ECO:0000269|PubMed:16419067}. CC -!- SIMILARITY: Belongs to the NadC/ModD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08397.1; -; Genomic_DNA. DR PIR; C64689; C64689. DR RefSeq; NP_208147.1; NC_000915.1. DR RefSeq; WP_000405980.1; NC_018939.1. DR PDB; 2B7N; X-ray; 2.30 A; A/B/C=1-273. DR PDB; 2B7P; X-ray; 2.51 A; A/B/C=1-273. DR PDB; 2B7Q; X-ray; 3.31 A; A/B/C=1-273. DR PDBsum; 2B7N; -. DR PDBsum; 2B7P; -. DR PDBsum; 2B7Q; -. DR ProteinModelPortal; O25909; -. DR SMR; O25909; 1-273. DR DIP; DIP-3329N; -. DR IntAct; O25909; 3. DR MINT; MINT-182259; -. DR STRING; 85962.HP1355; -. DR PaxDb; O25909; -. DR PRIDE; O25909; -. DR EnsemblBacteria; AAD08397; AAD08397; HP_1355. DR GeneID; 900348; -. DR KEGG; heo:C694_06995; -. DR KEGG; hpy:HP1355; -. DR PATRIC; 20594097; VBIHelPyl33062_1419. DR eggNOG; ENOG4105D18; Bacteria. DR eggNOG; COG0157; LUCA. DR KO; K00767; -. DR OMA; HQATFID; -. DR OrthoDB; EOG6KT2XH; -. DR BioCyc; HPY:HP1355-MONOMER; -. DR BRENDA; 2.4.2.19; 2604. DR UniPathway; UPA00253; UER00331. DR EvolutionaryTrace; O25909; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004514; F:nicotinate-nucleotide diphosphorylase (carboxylating) activity; IEA:UniProtKB-EC. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR Gene3D; 3.90.1170.20; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR004393; NadC. DR InterPro; IPR027277; NadC/ModD. DR InterPro; IPR002638; Quinolinate_PRibosylTrfase_C. DR InterPro; IPR022412; Quinolinate_PRibosylTrfase_N. DR Pfam; PF01729; QRPTase_C; 1. DR Pfam; PF02749; QRPTase_N; 1. DR PIRSF; PIRSF006250; NadC_ModD; 1. DR SUPFAM; SSF51690; SSF51690; 1. DR TIGRFAMs; TIGR00078; nadC; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Glycosyltransferase; KW Pyridine nucleotide biosynthesis; Reference proteome; Transferase. FT CHAIN 1 273 Probable nicotinate-nucleotide FT pyrophosphorylase [carboxylating]. FT /FTId=PRO_0000155943. FT REGION 124 126 Substrate binding. FT REGION 235 237 Substrate binding. FT REGION 256 258 Substrate binding. FT BINDING 91 91 Substrate. {ECO:0000250}. FT BINDING 148 148 Substrate. {ECO:0000269|PubMed:16419067}. FT BINDING 158 158 Substrate. {ECO:0000269|PubMed:16419067}. FT BINDING 188 188 Substrate. {ECO:0000269|PubMed:16419067}. FT BINDING 209 209 Substrate. {ECO:0000269|PubMed:16419067}. FT HELIX 4 15 {ECO:0000244|PDB:2B7N}. FT HELIX 21 24 {ECO:0000244|PDB:2B7N}. FT STRAND 30 39 {ECO:0000244|PDB:2B7N}. FT HELIX 46 55 {ECO:0000244|PDB:2B7N}. FT STRAND 59 63 {ECO:0000244|PDB:2B7N}. FT STRAND 75 82 {ECO:0000244|PDB:2B7N}. FT HELIX 83 114 {ECO:0000244|PDB:2B7N}. FT STRAND 117 122 {ECO:0000244|PDB:2B7N}. FT HELIX 132 140 {ECO:0000244|PDB:2B7N}. FT TURN 141 143 {ECO:0000244|PDB:2B7N}. FT TURN 151 153 {ECO:0000244|PDB:2B7N}. FT STRAND 155 157 {ECO:0000244|PDB:2B7N}. FT HELIX 159 162 {ECO:0000244|PDB:2B7N}. FT HELIX 168 175 {ECO:0000244|PDB:2B7N}. FT HELIX 176 178 {ECO:0000244|PDB:2B7N}. FT STRAND 185 191 {ECO:0000244|PDB:2B7N}. FT HELIX 192 201 {ECO:0000244|PDB:2B7N}. FT STRAND 204 209 {ECO:0000244|PDB:2B7N}. FT HELIX 213 226 {ECO:0000244|PDB:2B7N}. FT STRAND 231 237 {ECO:0000244|PDB:2B7N}. FT TURN 240 242 {ECO:0000244|PDB:2B7N}. FT HELIX 243 247 {ECO:0000244|PDB:2B7N}. FT TURN 248 250 {ECO:0000244|PDB:2B7N}. FT STRAND 252 255 {ECO:0000244|PDB:2B7N}. FT HELIX 258 261 {ECO:0000244|PDB:2B7N}. FT STRAND 268 271 {ECO:0000244|PDB:2B7N}. SQ SEQUENCE 273 AA; 30803 MW; 69CF0F73B2553CD5 CRC64; MEIRTFLERA LKEDLGHGDL FERVLEKDFK ATAFVRAKQE GVFSGEKYAL ELLEMTGIEC VQTIKDKERF KPKDALMEIR GDFSMLLKVE RTLLNLLQHS SGIATLTSRF VEALNSHKVR LLDTRKTRPL LRIFEKYSVL NGGASNHRLG LDDALMLKDT HLRHVKDLKS FLTHARKNLP FTAKIEIECE SFEEAKNAMN AGADIVMCDN LSVLETKEIA AYRDAHYPFV LLEASGNISL ESINAYAKSG VDAISVGALI HQATFIDMHM KMA // ID MUTS2_HELPY Reviewed; 762 AA. AC O25338; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00092}; GN Name=mutS2 {ECO:0000255|HAMAP-Rule:MF_00092}; Synonyms=mutSB; GN OrderedLocusNames=HP_0621; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=JP26; RX PubMed=15866941; DOI=10.1128/JB.187.10.3528-3537.2005; RA Kang J., Huang S., Blaser M.J.; RT "Structural and functional divergence of MutS2 from bacterial MutS1 RT and eukaryotic MSH4-MSH5 homologs."; RL J. Bacteriol. 187:3528-3537(2005). RN [3] RP FUNCTION, ATPASE ACTIVITY, DNA-BINDING, ENZYME REGULATION, DISRUPTION RP PHENOTYPE, AND MUTAGENESIS OF GLY-338. RX PubMed=15629722; DOI=10.1016/j.molcel.2004.11.035; RA Pinto A.V., Mathieu A., Marsin S., Veaute X., Ielpi L., Labigne A., RA Radicella J.P.; RT "Suppression of homologous and homeologous recombination by the RT bacterial MutS2 protein."; RL Mol. Cell 17:113-120(2005). RN [4] RP FUNCTION IN DNA DAMAGE REPAIR, DNA-BINDING, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695, and SS1; RX PubMed=16164556; DOI=10.1111/j.1365-2958.2005.04833.x; RA Wang G., Alamuri P., Humayun M.Z., Taylor D.E., Maier R.J.; RT "The Helicobacter pylori MutS protein confers protection from RT oxidative DNA damage."; RL Mol. Microbiol. 58:166-176(2005). CC -!- FUNCTION: Endonuclease that is involved in the suppression of CC homologous recombination and may therefore have a key role in the CC control of bacterial genetic diversity (Probable). Also involved CC in repairing oxidative DNA damage. Has ATPase activity. Binds DNA. CC {ECO:0000255|HAMAP-Rule:MF_00092, ECO:0000269|PubMed:15629722, CC ECO:0000269|PubMed:15866941, ECO:0000269|PubMed:16164556, CC ECO:0000305}. CC -!- ENZYME REGULATION: ATPase activity is stimulated by DNA. CC {ECO:0000269|PubMed:15629722}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00092}. CC -!- DOMAIN: Contains an N-terminal DNA-binding domain, followed by a CC dimerization domain and a C-terminal domain, called the small CC MutS-related (Smr) domain, which is absent from MutS and contains CC the endonuclease activity. {ECO:0000250}. CC -!- DISRUPTION PHENOTYPE: Mutants have a significantly increased CC frequency of intergenomic recombination. They are more sensitive CC than wild-type cells to oxidative stress induced by agents such as CC H(2)O(2), paraquat or oxygen. They also have a reduced CC colonization capacity in a mouse model of infection. CC {ECO:0000269|PubMed:15629722, ECO:0000269|PubMed:15866941, CC ECO:0000269|PubMed:16164556}. CC -!- SIMILARITY: Belongs to the DNA mismatch repair MutS family. MutS2 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00092}. CC -!- SIMILARITY: Contains 1 Smr domain. {ECO:0000255|HAMAP- CC Rule:MF_00092}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07685.1; -; Genomic_DNA. DR PIR; E64597; E64597. DR RefSeq; NP_207415.1; NC_000915.1. DR RefSeq; WP_010875507.1; NC_000915.1. DR ProteinModelPortal; O25338; -. DR DIP; DIP-3208N; -. DR IntAct; O25338; 32. DR MINT; MINT-162121; -. DR STRING; 85962.HP0621; -. DR PaxDb; O25338; -. DR PRIDE; O25338; -. DR EnsemblBacteria; AAD07685; AAD07685; HP_0621. DR GeneID; 900258; -. DR KEGG; hpy:HP0621; -. DR PATRIC; 20592525; VBIHelPyl33062_0651. DR eggNOG; ENOG4105C98; Bacteria. DR eggNOG; COG1193; LUCA. DR KO; K07456; -. DR OMA; NAGGKTM; -. DR OrthoDB; EOG6P5ZC4; -. DR BioCyc; HPY:HP0621-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030983; F:mismatched DNA binding; IEA:InterPro. DR GO; GO:0006298; P:mismatch repair; IEA:InterPro. DR GO; GO:0045910; P:negative regulation of DNA recombination; IMP:CACAO. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00092; MutS2; 1. DR InterPro; IPR000432; DNA_mismatch_repair_MutS_C. DR InterPro; IPR007696; DNA_mismatch_repair_MutS_core. DR InterPro; IPR005747; MutS2. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR002625; Smr_dom. DR PANTHER; PTHR11361:SF14; PTHR11361:SF14; 1. DR Pfam; PF00488; MutS_V; 1. DR Pfam; PF01713; Smr; 1. DR PIRSF; PIRSF005814; MutS_YshD; 1. DR SMART; SM00534; MUTSac; 1. DR SMART; SM00533; MUTSd; 1. DR SMART; SM00463; SMR; 1. DR SUPFAM; SSF160443; SSF160443; 1. DR SUPFAM; SSF48334; SSF48334; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01069; mutS2; 1. DR PROSITE; PS50828; SMR; 1. PE 1: Evidence at protein level; KW ATP-binding; Complete proteome; DNA-binding; Endonuclease; Hydrolase; KW Nuclease; Nucleotide-binding; Reference proteome. FT CHAIN 1 762 Endonuclease MutS2. FT /FTId=PRO_0000115222. FT DOMAIN 688 762 Smr. {ECO:0000255|HAMAP-Rule:MF_00092}. FT NP_BIND 333 340 ATP. {ECO:0000255|HAMAP-Rule:MF_00092}. FT MUTAGEN 338 338 G->R: Lack of ATPase activity. FT {ECO:0000269|PubMed:15629722}. SQ SEQUENCE 762 AA; 86753 MW; 8EFCE02A77DE4761 CRC64; MSDAPKRSLN PTLMMNNNNT PPKPLEESLD LKEFIALFKT FFAKERDTIA LENDLKQTFT YLNEVDAIGL PTPKSVKESD LIIIKLTKLG TLHLDEIFEI VKRLHYIVVL QNAFKTFTHL KFHERLNAIV LPPFFNDLIA LFDDEGKIKQ GANATLDALN ESLNRLKKES VKIIHHYARS KELAPYLVDT QSHLKHGYEC LLLKSGFSGA IKGVVLERSA NGYFYLLPES AQKIAQKIAQ IGNEIDCCIV EMCQTLSHSL QKHLLFLKFL FKEFDFLDSL QARLNFAKAY NLEFVMPSFT QKKMILENFS HPILKEPKPL NLKFEKSMLA VTGVNAGGKT MLLKSLLSAA FLSKHLIPMK INAHHSIIPY FKEIHAIIND PQNSANNIST FAGRMKQFSA LLSKENMLLG VDEIELGTDA DEASSLYKTL LEKLLKQNNQ IIITTHHKRL SVLMAENKEV ELLAALYDEE KERPTYTFLK GVIGKSYAFE TALRYGVPHF LIEKAKTFYG EDKEKLNVLI ENSSALEREL KQKNEHLENA LKEQEYLKNA WLLEMEKQKE IFHNKKLELE KSYQQALNIL KSEVASKDTS SMHKEIHKAS EILSKHKTNQ EIPQIITNFQ ANEKARYKNE SVLIVQILDK GYYWIETELG MRLKAHGSLL KKIQKPPKNK FKPPKTTIPK PKEASLRLDL RGQRSEEALD LLDAFLNDAL LGGFEEVLIC HGKGSGILEK FVKEFLKNHP KVVSFSDAPI NLGGSGVKIV KL // ID NADE_HELPY Reviewed; 260 AA. AC O25096; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=NH(3)-dependent NAD(+) synthetase; DE EC=6.3.1.5; GN Name=nadE; OrderedLocusNames=HP_0329; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + deamido-NAD(+) + NH(3) = AMP + CC diphosphate + NAD(+). CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from CC deamido-NAD(+) (ammonia route): step 1/1. CC -!- SIMILARITY: Belongs to the NAD synthetase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07396.1; -; Genomic_DNA. DR PIR; A64561; A64561. DR RefSeq; NP_207127.1; NC_000915.1. DR RefSeq; WP_001168317.1; NC_018939.1. DR PDB; 1XNG; X-ray; 1.70 A; A/B=1-260. DR PDB; 1XNH; X-ray; 2.30 A; A=1-260. DR PDBsum; 1XNG; -. DR PDBsum; 1XNH; -. DR ProteinModelPortal; O25096; -. DR SMR; O25096; 3-260. DR STRING; 85962.HP0329; -. DR PaxDb; O25096; -. DR PRIDE; O25096; -. DR EnsemblBacteria; AAD07396; AAD07396; HP_0329. DR GeneID; 900366; -. DR KEGG; heo:C694_01665; -. DR KEGG; hpy:HP0329; -. DR PATRIC; 20591891; VBIHelPyl33062_0343. DR eggNOG; ENOG4105C4K; Bacteria. DR eggNOG; COG0171; LUCA. DR KO; K01916; -. DR OMA; CARLRMA; -. DR OrthoDB; EOG6VB6S8; -. DR BioCyc; HPY:HP0329-MONOMER; -. DR UniPathway; UPA00253; UER00333. DR EvolutionaryTrace; O25096; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003952; F:NAD+ synthase (glutamine-hydrolyzing) activity; IEA:InterPro. DR GO; GO:0008795; F:NAD+ synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00193; NadE; 1. DR InterPro; IPR022310; NAD/GMP_synthase. DR InterPro; IPR003694; NAD_synthase. DR InterPro; IPR022926; NH(3)-dep_NAD(+)_synth. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF02540; NAD_synthase; 1. DR TIGRFAMs; TIGR00552; nadE; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Complete proteome; Ligase; NAD; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 260 NH(3)-dependent NAD(+) synthetase. FT /FTId=PRO_0000152173. FT NP_BIND 31 38 ATP. {ECO:0000250}. FT ACT_SITE 33 33 {ECO:0000250}. FT HELIX 5 22 {ECO:0000244|PDB:1XNG}. FT STRAND 28 31 {ECO:0000244|PDB:1XNG}. FT HELIX 36 49 {ECO:0000244|PDB:1XNG}. FT HELIX 50 52 {ECO:0000244|PDB:1XNG}. FT STRAND 53 57 {ECO:0000244|PDB:1XNG}. FT STRAND 61 63 {ECO:0000244|PDB:1XNG}. FT HELIX 65 78 {ECO:0000244|PDB:1XNG}. FT STRAND 82 84 {ECO:0000244|PDB:1XNG}. FT HELIX 88 97 {ECO:0000244|PDB:1XNG}. FT HELIX 103 125 {ECO:0000244|PDB:1XNG}. FT STRAND 128 130 {ECO:0000244|PDB:1XNG}. FT HELIX 135 140 {ECO:0000244|PDB:1XNG}. FT TURN 145 149 {ECO:0000244|PDB:1XNG}. FT STRAND 152 154 {ECO:0000244|PDB:1XNG}. FT TURN 155 158 {ECO:0000244|PDB:1XNG}. FT HELIX 161 170 {ECO:0000244|PDB:1XNG}. FT HELIX 175 178 {ECO:0000244|PDB:1XNG}. FT STRAND 186 189 {ECO:0000244|PDB:1XNH}. FT HELIX 192 196 {ECO:0000244|PDB:1XNG}. FT HELIX 200 213 {ECO:0000244|PDB:1XNG}. FT STRAND 214 217 {ECO:0000244|PDB:1XNG}. FT HELIX 221 226 {ECO:0000244|PDB:1XNG}. FT HELIX 231 243 {ECO:0000244|PDB:1XNG}. FT HELIX 245 248 {ECO:0000244|PDB:1XNG}. SQ SEQUENCE 260 AA; 29269 MW; 01D8542F2DBF90C8 CRC64; MQKDYQKLIV YLCDFLEKEV QKRGFKKVVY GLSGGLDSAV VGVLCQKVFK ENAHALLMPS SVSMPENKTD ALNLCEKFSI PYTEYSIAPY DAIFSSHFKD ASLTRKGNFC ARLRMAFLYD YSLKSDSLVI GTSNKSERML GYGTLFGDLA CAINPIGELF KTEVYELARR LNIPKKILNK PPSADLFVGQ SDEKDLGYPY SVIDPLLKDI EALFQTKPID TETLAQLGYD EILVKNITSR IQKNAFKLEL PAIAKRFNPE // ID NADD_HELPY Reviewed; 174 AA. AC O25895; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Probable nicotinate-nucleotide adenylyltransferase; DE EC=2.7.7.18; DE AltName: Full=Deamido-NAD(+) diphosphorylase; DE AltName: Full=Deamido-NAD(+) pyrophosphorylase; DE AltName: Full=Nicotinate mononucleotide adenylyltransferase; DE Short=NaMN adenylyltransferase; GN Name=nadD; OrderedLocusNames=HP_1337; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible adenylation of nicotinate CC mononucleotide (NaMN) to nicotinic acid adenine dinucleotide CC (NaAD). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + beta-nicotinate-D-ribonucleotide = CC diphosphate + deamido-NAD(+). CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; deamido- CC NAD(+) from nicotinate D-ribonucleotide: step 1/1. CC -!- SIMILARITY: Belongs to the NadD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08379.1; -; Genomic_DNA. DR PIR; A64687; A64687. DR RefSeq; NP_208129.1; NC_000915.1. DR RefSeq; WP_001095125.1; NC_000915.1. DR ProteinModelPortal; O25895; -. DR IntAct; O25895; 7. DR STRING; 85962.HP1337; -. DR PaxDb; O25895; -. DR PRIDE; O25895; -. DR EnsemblBacteria; AAD08379; AAD08379; HP_1337. DR GeneID; 900189; -. DR KEGG; hpy:HP1337; -. DR PATRIC; 20594057; VBIHelPyl33062_1399. DR eggNOG; ENOG4108Z1W; Bacteria. DR eggNOG; COG1057; LUCA. DR KO; K00969; -. DR OMA; YFPLKGI; -. DR OrthoDB; EOG6F55KJ; -. DR BioCyc; HPY:HP1337-MONOMER; -. DR UniPathway; UPA00253; UER00332. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004515; F:nicotinate-nucleotide adenylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00244; NaMN_adenylyltr; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR005248; NAMN_adtrnsfrase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR PANTHER; PTHR12039; PTHR12039; 1. DR Pfam; PF01467; CTP_transf_like; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. DR TIGRFAMs; TIGR00482; TIGR00482; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; NAD; Nucleotide-binding; KW Nucleotidyltransferase; Pyridine nucleotide biosynthesis; KW Reference proteome; Transferase. FT CHAIN 1 174 Probable nicotinate-nucleotide FT adenylyltransferase. FT /FTId=PRO_0000181415. SQ SEQUENCE 174 AA; 19829 MW; 8D6DA444AF155B38 CRC64; MNTMNSVLKY KELALYGGSF DPLHKAHLAI IEQTLELLPS AKLIVLPAYQ NPFKKPCFLD AQTRFKELER ALKGIDRVLL SDFEIKQERA VPTIESVLHF QKLYHPQTLY LVIGADCLRH LSSWTNAKEL LKRVELVVFE RIGYEEIQFK GHYHPLKGID APISSSAIRA SLGV // ID NHAA_HELPY Reviewed; 438 AA. AC O26076; DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Na(+)/H(+) antiporter NhaA {ECO:0000255|HAMAP-Rule:MF_01844}; DE AltName: Full=Sodium/proton antiporter NhaA {ECO:0000255|HAMAP-Rule:MF_01844}; GN Name=nhaA {ECO:0000255|HAMAP-Rule:MF_01844}; GN OrderedLocusNames=HP_1552; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Na(+)/H(+) antiporter that extrudes sodium in exchange CC for external protons. {ECO:0000255|HAMAP-Rule:MF_01844}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01844}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01844}. CC -!- SIMILARITY: Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter CC family. {ECO:0000255|HAMAP-Rule:MF_01844}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08592.1; -; Genomic_DNA. DR PIR; H64713; H64713. DR RefSeq; NP_208343.1; NC_000915.1. DR RefSeq; WP_001049644.1; NC_018939.1. DR ProteinModelPortal; O26076; -. DR STRING; 85962.HP1552; -. DR PaxDb; O26076; -. DR PRIDE; O26076; -. DR EnsemblBacteria; AAD08592; AAD08592; HP_1552. DR GeneID; 899739; -. DR KEGG; heo:C694_08040; -. DR KEGG; hpy:HP1552; -. DR PATRIC; 20594527; VBIHelPyl33062_1631. DR eggNOG; ENOG4105DRC; Bacteria. DR eggNOG; COG3004; LUCA. DR KO; K03313; -. DR OMA; IGYFWLS; -. DR OrthoDB; EOG61VZ7F; -. DR BioCyc; HPY:HP1552-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015297; F:antiporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0015081; F:sodium ion transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006885; P:regulation of pH; IEA:InterPro. DR Gene3D; 1.20.1530.10; -; 2. DR HAMAP; MF_01844; NhaA; 1. DR InterPro; IPR023171; Na/H_antiporter_dom. DR InterPro; IPR004670; NhaA. DR PANTHER; PTHR30341:SF0; PTHR30341:SF0; 2. DR Pfam; PF06965; Na_H_antiport_1; 1. DR TIGRFAMs; TIGR00773; NhaA; 1. PE 3: Inferred from homology; KW Antiport; Cell inner membrane; Cell membrane; Complete proteome; KW Ion transport; Membrane; Reference proteome; Sodium; Sodium transport; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 438 Na(+)/H(+) antiporter NhaA. FT /FTId=PRO_0000334320. FT TRANSMEM 23 43 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 62 82 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 104 124 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 133 153 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 162 182 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 185 205 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 221 241 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 302 322 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 337 357 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 372 392 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. FT TRANSMEM 410 430 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01844}. SQ SEQUENCE 438 AA; 47759 MW; C3E97BCB74F71414 CRC64; MNLKKTENAL SLTLKNFIKS ESFGGIFLFL NAVLAMVVAN SFLKESYFAL WHTPFGFQIG DFFIGFSLHN WIDDVLMALF FLMIGLEIKR ELLFGELSSF KKASFPVIAA IGGMIAPGLI YFFLNANTPS QHGFGIPMAT DIAFALGVIM LLGKRVPTAL KVFLITLAVA DDLGAIVVIA LFYTTNLKFA WLLGALGVVL VLAVLNRLNM RSLIPYLLLG VLLWFCVHQS GIHATIAAVI LAFMIPVKIP KDSKNVELLE LGKRYAETSS GALLSKEQQE ILHSIEEKAS ALQSPLERLE HFLAPISGYF IMPLFAFANA GVSVDSSINL EVDKVLLGVI LGLCLGKPLG IFLITFISEK LKITARPKGI SWWHILGAGL LAGIGFTMSM FISNLAFTSE HKDAMEVAKI AILLGSLISG IIGALYLFAL DKRAALKK // ID NADK_HELPY Reviewed; 284 AA. AC O25944; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; DE EC=2.7.1.23 {ECO:0000255|HAMAP-Rule:MF_00361}; DE AltName: Full=ATP-dependent NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; GN Name=nadK {ECO:0000255|HAMAP-Rule:MF_00361}; GN OrderedLocusNames=HP_1394; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the regulation of the intracellular balance CC of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. CC Catalyzes specifically the phosphorylation on 2'-hydroxyl of the CC adenosine moiety of NAD to yield NADP. {ECO:0000255|HAMAP- CC Rule:MF_00361}. CC -!- CATALYTIC ACTIVITY: ATP + NAD(+) = ADP + NADP(+). CC {ECO:0000255|HAMAP-Rule:MF_00361}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00361}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00361}. CC -!- SIMILARITY: Belongs to the NAD kinase family. {ECO:0000255|HAMAP- CC Rule:MF_00361}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08434.1; -; Genomic_DNA. DR PIR; B64694; B64694. DR RefSeq; NP_208185.1; NC_000915.1. DR RefSeq; WP_000655300.1; NC_018939.1. DR ProteinModelPortal; O25944; -. DR IntAct; O25944; 4. DR MINT; MINT-4074458; -. DR STRING; 85962.HP1394; -. DR PaxDb; O25944; -. DR PRIDE; O25944; -. DR EnsemblBacteria; AAD08434; AAD08434; HP_1394. DR GeneID; 899902; -. DR KEGG; heo:C694_07200; -. DR KEGG; hpy:HP1394; -. DR PATRIC; 20594175; VBIHelPyl33062_1458. DR eggNOG; ENOG4105F91; Bacteria. DR eggNOG; COG0061; LUCA. DR KO; K00858; -. DR OMA; LLWGESP; -. DR OrthoDB; EOG6PZXDR; -. DR BioCyc; HPY:HP1394-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003951; F:NAD+ kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019674; P:NAD metabolic process; IEA:InterPro. DR GO; GO:0006741; P:NADP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 2.60.200.30; -; 1. DR Gene3D; 3.40.50.10330; -; 1. DR HAMAP; MF_00361; NAD_kinase; 1. DR InterPro; IPR017438; ATP-NAD_kinase_dom_1. DR InterPro; IPR017437; ATP-NAD_kinase_PpnK-typ_all-b. DR InterPro; IPR016064; NAD/diacylglycerol_kinase. DR InterPro; IPR002504; NADK. DR PANTHER; PTHR20275; PTHR20275; 1. DR Pfam; PF01513; NAD_kinase; 1. DR SUPFAM; SSF111331; SSF111331; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Kinase; NAD; NADP; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 284 NAD kinase. FT /FTId=PRO_0000120623. FT NP_BIND 70 71 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. FT NP_BIND 139 140 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. FT NP_BIND 180 185 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. FT ACT_SITE 70 70 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00361}. FT BINDING 167 167 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. FT BINDING 169 169 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. FT BINDING 177 177 NAD; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00361}. FT BINDING 236 236 NAD. {ECO:0000255|HAMAP-Rule:MF_00361}. SQ SEQUENCE 284 AA; 31632 MW; 92050696C7E655F8 CRC64; MKDSLQTIGV FVRPTHYQNP LFEKLEQAKE WVLKLLEDEG FESFMIDSLD GAKDARLIEK ADAFLCLGGD GTILGALRMT HSYNKPCFGV RIGNLGFLSA VELNGLKDFL QDFKQDRIKL EEHLALEGRI GKTSFYAINE IVIAKKKALG VLDIKAYAGH TPFNTYKGDG LIIATPLGST AYNLSAHGPI VHALSQSYIL TPLCDFSLTQ RPLVLGAEFC LNFCAHEDAL VVIDGQATYD LKANQPLYIQ KSPTTTKLLQ KNSRDYFKVL KEKLLWGESP SKKR // ID NIKR_HELPY Reviewed; 148 AA. AC O25896; DT 02-NOV-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 111. DE RecName: Full=Putative nickel-responsive regulator {ECO:0000255|HAMAP-Rule:MF_00476}; GN OrderedLocusNames=HP_1338; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transcriptional regulator. {ECO:0000255|HAMAP- CC Rule:MF_00476}. CC -!- COFACTOR: CC Name=Ni(2+); Xref=ChEBI:CHEBI:49786; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00476}; CC Note=Binds 1 nickel ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00476}; CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_00476}. CC -!- INTERACTION: CC Self; NbExp=2; IntAct=EBI-528005, EBI-528005; CC -!- SIMILARITY: Belongs to the transcriptional regulatory CopG/NikR CC family. {ECO:0000255|HAMAP-Rule:MF_00476}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08380.1; -; Genomic_DNA. DR PIR; B64687; B64687. DR RefSeq; NP_208130.1; NC_000915.1. DR RefSeq; WP_000380787.1; NC_018939.1. DR PDB; 2CA9; X-ray; 2.05 A; A/B=1-148. DR PDB; 2CAD; X-ray; 2.30 A; A/B=1-148. DR PDB; 2CAJ; X-ray; 2.35 A; A/B=1-148. DR PDB; 2WVB; X-ray; 1.90 A; A/B=1-148. DR PDB; 2WVC; X-ray; 2.10 A; A/B=1-148. DR PDB; 2WVD; X-ray; 2.65 A; A/B/C/D=1-148. DR PDB; 2WVE; X-ray; 2.30 A; A/B=1-148. DR PDB; 2WVF; X-ray; 1.60 A; A/B=1-148. DR PDB; 3LGH; X-ray; 2.37 A; A/B/C/D=1-148. DR PDB; 3PHT; X-ray; 2.04 A; A/B=1-148. DR PDB; 3QSI; X-ray; 3.08 A; A/B/C/D/E/F/G/H/I/J=61-148. DR PDBsum; 2CA9; -. DR PDBsum; 2CAD; -. DR PDBsum; 2CAJ; -. DR PDBsum; 2WVB; -. DR PDBsum; 2WVC; -. DR PDBsum; 2WVD; -. DR PDBsum; 2WVE; -. DR PDBsum; 2WVF; -. DR PDBsum; 3LGH; -. DR PDBsum; 3PHT; -. DR PDBsum; 3QSI; -. DR ProteinModelPortal; O25896; -. DR SMR; O25896; 9-147. DR DIP; DIP-3711N; -. DR IntAct; O25896; 3. DR MINT; MINT-166516; -. DR STRING; 85962.HP1338; -. DR PaxDb; O25896; -. DR PRIDE; O25896; -. DR EnsemblBacteria; AAD08380; AAD08380; HP_1338. DR GeneID; 900339; -. DR KEGG; heo:C694_06905; -. DR KEGG; hpy:HP1338; -. DR PATRIC; 20594059; VBIHelPyl33062_1400. DR eggNOG; ENOG4105MRR; Bacteria. DR eggNOG; COG0864; LUCA. DR KO; K07722; -. DR OMA; AHNCLET; -. DR OrthoDB; EOG65QWK8; -. DR BioCyc; HPY:HP1338-MONOMER; -. DR EvolutionaryTrace; O25896; -. DR Proteomes; UP000000429; Chromosome. DR CollecTF; EXPREG_00000670; -. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0010045; P:response to nickel cation; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.1220.10; -; 1. DR HAMAP; MF_00476; NikR; 1. DR InterPro; IPR013321; Arc_rbn_hlx_hlx. DR InterPro; IPR002145; CopG. DR InterPro; IPR022988; Ni_resp_reg_NikR. DR InterPro; IPR010985; Ribbon_hlx_hlx. DR InterPro; IPR014864; TF_NikR_Ni-bd_C. DR Pfam; PF08753; NikR_C; 1. DR Pfam; PF01402; RHH_1; 1. DR SUPFAM; SSF47598; SSF47598; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA-binding; Metal-binding; Nickel; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 148 Putative nickel-responsive regulator. FT /FTId=PRO_0000139291. FT METAL 88 88 Nickel. {ECO:0000255|HAMAP- FT Rule:MF_00476}. FT METAL 99 99 Nickel. {ECO:0000255|HAMAP- FT Rule:MF_00476}. FT METAL 101 101 Nickel. {ECO:0000255|HAMAP- FT Rule:MF_00476}. FT METAL 107 107 Nickel. {ECO:0000255|HAMAP- FT Rule:MF_00476}. FT STRAND 10 18 {ECO:0000244|PDB:2WVF}. FT HELIX 19 32 {ECO:0000244|PDB:2WVF}. FT HELIX 37 50 {ECO:0000244|PDB:2WVF}. FT HELIX 51 56 {ECO:0000244|PDB:2CA9}. FT STRAND 64 73 {ECO:0000244|PDB:2WVF}. FT STRAND 74 78 {ECO:0000244|PDB:3QSI}. FT HELIX 79 89 {ECO:0000244|PDB:2WVF}. FT STRAND 91 101 {ECO:0000244|PDB:2WVF}. FT STRAND 103 115 {ECO:0000244|PDB:2WVF}. FT HELIX 117 128 {ECO:0000244|PDB:2WVF}. FT STRAND 133 141 {ECO:0000244|PDB:2WVF}. FT HELIX 143 145 {ECO:0000244|PDB:2WVF}. SQ SEQUENCE 148 AA; 17147 MW; 9C8A2F803E7822B8 CRC64; MDTPNKDDSI IRFSVSLQQN LLDELDNRII KNGYSSRSEL VRDMIREKLV EDNWAEDNPN DESKIAVLVV IYDHHQRELN QRMIDIQHAS GTHVLCTTHI HMDEHNCLET IILQGNSFEI QRLQLEIGGL RGVKFAKLTK ASSFEYNE // ID NNR_HELPY Reviewed; 466 AA. AC P56176; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Bifunctional NAD(P)H-hydrate repair enzyme Nnr; DE AltName: Full=Nicotinamide nucleotide repair protein; DE Includes: DE RecName: Full=ADP-dependent (S)-NAD(P)H-hydrate dehydratase; DE EC=4.2.1.136; DE AltName: Full=ADP-dependent NAD(P)HX dehydratase; DE Includes: DE RecName: Full=NAD(P)H-hydrate epimerase; DE EC=5.1.99.6; DE AltName: Full=NAD(P)HX epimerase; GN Name=nnr; OrderedLocusNames=HP_1363; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS). RG New York structural genomix research consortium (NYSGXRC); RT "Crystal structure of a carbohydrate kinase (YjeF family) from RT Helicobacter pylori."; RL Submitted (DEC-2009) to the PDB data bank. CC -!- FUNCTION: Bifunctional enzyme that catalyzes the epimerization of CC the S- and R-forms of NAD(P)HX and the dehydration of the S-form CC of NAD(P)HX at the expense of ADP, which is converted to AMP. This CC allows the repair of both epimers of NAD(P)HX, a damaged form of CC NAD(P)H that is a result of enzymatic or heat-dependent hydration CC (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ADP + (6S)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide adenine-dinucleotide = AMP + phosphate + CC NADH. CC -!- CATALYTIC ACTIVITY: ADP + (6S)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide adenine-dinucleotide phosphate = AMP + CC phosphate + NADPH. CC -!- CATALYTIC ACTIVITY: (6R)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide-adenine dinucleotide = (6S)-6-beta-hydroxy- CC 1,4,5,6-tetrahydronicotinamide-adenine dinucleotide. CC -!- CATALYTIC ACTIVITY: (6R)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide-adenine dinucleotide phosphate = (6S)-6- CC beta-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide CC phosphate. CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; Evidence={ECO:0000250}; CC Note=Binds 1 potassium ion per subunit. {ECO:0000250}; CC -!- SIMILARITY: In the N-terminal section; belongs to the NnrE/AIBP CC family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the NnrD/CARKD CC family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 YjeF C-terminal domain. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 YjeF N-terminal domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08403.1; -; Genomic_DNA. DR PIR; C64690; C64690. DR RefSeq; NP_208155.1; NC_000915.1. DR RefSeq; WP_000954017.1; NC_018939.1. DR PDB; 3K5W; X-ray; 2.60 A; A=2-466. DR PDBsum; 3K5W; -. DR ProteinModelPortal; P56176; -. DR STRING; 85962.HP1363; -. DR PaxDb; P56176; -. DR PRIDE; P56176; -. DR EnsemblBacteria; AAD08403; AAD08403; HP_1363. DR GeneID; 900323; -. DR KEGG; heo:C694_07035; -. DR KEGG; hpy:HP1363; -. DR PATRIC; 20594115; VBIHelPyl33062_1428. DR eggNOG; ENOG4105DR1; Bacteria. DR eggNOG; COG0062; LUCA. DR eggNOG; COG0063; LUCA. DR OMA; KSPMCQL; -. DR OrthoDB; EOG6C018D; -. DR BioCyc; HPY:HP1363-MONOMER; -. DR EvolutionaryTrace; P56176; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0052855; F:ADP-dependent NAD(P)H-hydrate dehydratase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.1190.20; -; 1. DR Gene3D; 3.40.50.10260; -; 1. DR HAMAP; MF_01965; NADHX_dehydratase; 1. DR HAMAP; MF_01966; NADHX_epimerase; 1. DR InterPro; IPR017953; Carbohydrate_kinase_pred_CS. DR InterPro; IPR000631; CARKD. DR InterPro; IPR030677; Nnr. DR InterPro; IPR029056; Ribokinase-like. DR InterPro; IPR004443; YjeF_N_dom. DR Pfam; PF01256; Carb_kinase; 1. DR Pfam; PF03853; YjeF_N; 1. DR PIRSF; PIRSF017184; Nnr; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR SUPFAM; SSF64153; SSF64153; 1. DR TIGRFAMs; TIGR00196; yjeF_cterm; 1. DR TIGRFAMs; TIGR00197; yjeF_nterm; 1. DR PROSITE; PS01050; YJEF_C_2; 1. DR PROSITE; PS51383; YJEF_C_3; 1. DR PROSITE; PS51385; YJEF_N; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Complete proteome; Isomerase; Lyase; KW Metal-binding; Multifunctional enzyme; NAD; NADP; Nucleotide-binding; KW Potassium; Reference proteome. FT CHAIN 1 466 Bifunctional NAD(P)H-hydrate repair FT enzyme Nnr. FT /FTId=PRO_0000119044. FT DOMAIN 8 207 YjeF N-terminal. FT DOMAIN 215 466 YjeF C-terminal. FT NP_BIND 385 389 ADP. {ECO:0000250}. FT NP_BIND 404 413 ADP. {ECO:0000250}. FT REGION 1 207 NAD(P)H-hydrate epimerase. {ECO:0000250}. FT REGION 56 60 NAD(P)HX (for epimerase activity). FT {ECO:0000250}. FT REGION 124 130 NAD(P)HX (for epimerase activity). FT {ECO:0000250}. FT REGION 215 466 ADP-dependent (S)-NAD(P)H-hydrate FT dehydratase. {ECO:0000250}. FT REGION 342 348 NAD(P)HX (for dehydratase activity). FT {ECO:0000250}. FT METAL 57 57 Potassium. {ECO:0000250}. FT METAL 120 120 Potassium. {ECO:0000250}. FT METAL 154 154 Potassium. {ECO:0000250}. FT BINDING 151 151 NAD(P)HX (for epimerase activity). FT {ECO:0000250}. FT BINDING 300 300 NAD(P)HX (for dehydratase activity); via FT amide nitrogen. {ECO:0000250}. FT BINDING 414 414 NAD(P)HX (for dehydratase activity). FT {ECO:0000250}. FT STRAND 2 6 {ECO:0000244|PDB:3K5W}. FT HELIX 9 17 {ECO:0000244|PDB:3K5W}. FT HELIX 23 39 {ECO:0000244|PDB:3K5W}. FT STRAND 47 52 {ECO:0000244|PDB:3K5W}. FT HELIX 56 68 {ECO:0000244|PDB:3K5W}. FT STRAND 72 80 {ECO:0000244|PDB:3K5W}. FT HELIX 85 96 {ECO:0000244|PDB:3K5W}. FT STRAND 100 103 {ECO:0000244|PDB:3K5W}. FT STRAND 115 122 {ECO:0000244|PDB:3K5W}. FT HELIX 137 140 {ECO:0000244|PDB:3K5W}. FT TURN 141 143 {ECO:0000244|PDB:3K5W}. FT STRAND 144 152 {ECO:0000244|PDB:3K5W}. FT STRAND 170 179 {ECO:0000244|PDB:3K5W}. FT HELIX 180 183 {ECO:0000244|PDB:3K5W}. FT HELIX 185 187 {ECO:0000244|PDB:3K5W}. FT HELIX 188 191 {ECO:0000244|PDB:3K5W}. FT STRAND 193 197 {ECO:0000244|PDB:3K5W}. FT HELIX 203 206 {ECO:0000244|PDB:3K5W}. FT STRAND 211 214 {ECO:0000244|PDB:3K5W}. FT HELIX 217 219 {ECO:0000244|PDB:3K5W}. FT HELIX 232 235 {ECO:0000244|PDB:3K5W}. FT STRAND 237 242 {ECO:0000244|PDB:3K5W}. FT HELIX 246 258 {ECO:0000244|PDB:3K5W}. FT STRAND 262 271 {ECO:0000244|PDB:3K5W}. FT STRAND 274 278 {ECO:0000244|PDB:3K5W}. FT STRAND 282 287 {ECO:0000244|PDB:3K5W}. FT STRAND 293 297 {ECO:0000244|PDB:3K5W}. FT HELIX 308 314 {ECO:0000244|PDB:3K5W}. FT STRAND 317 320 {ECO:0000244|PDB:3K5W}. FT HELIX 321 325 {ECO:0000244|PDB:3K5W}. FT HELIX 327 330 {ECO:0000244|PDB:3K5W}. FT TURN 331 334 {ECO:0000244|PDB:3K5W}. FT STRAND 335 340 {ECO:0000244|PDB:3K5W}. FT HELIX 343 349 {ECO:0000244|PDB:3K5W}. FT TURN 350 353 {ECO:0000244|PDB:3K5W}. FT HELIX 362 364 {ECO:0000244|PDB:3K5W}. FT HELIX 371 376 {ECO:0000244|PDB:3K5W}. FT STRAND 380 384 {ECO:0000244|PDB:3K5W}. FT STRAND 386 393 {ECO:0000244|PDB:3K5W}. FT STRAND 396 400 {ECO:0000244|PDB:3K5W}. FT HELIX 405 407 {ECO:0000244|PDB:3K5W}. FT HELIX 412 425 {ECO:0000244|PDB:3K5W}. FT HELIX 430 443 {ECO:0000244|PDB:3K5W}. FT HELIX 444 447 {ECO:0000244|PDB:3K5W}. FT HELIX 456 464 {ECO:0000244|PDB:3K5W}. SQ SEQUENCE 466 AA; 50737 MW; 52125FE79BA8F056 CRC64; MLSVYEKVNA LDKRAIEELF LSEDILMENA AMALERAVLQ NASLGAKVII LCGSGDNGGD GYALARRLVG RFKTLVFEMK LAKSPMCQLQ QERAKKAGVV IKAYEENALN QNLECDVLID CVIGSHFKGK LEPFLNFESL SQKARFKIAC DIPSGIDSKG RVDKGAFKAD LTISMGAIKS CLLSDRAKDY VGELKVGHLG VFNQIYEIPT DTFLLEKSDL KLPLRDRKNA HKGDYGHAHV LLGKHSGAGL LSALSALSFG SGVVSVQALE CEITSNNKPL ELVFCENFPN LLSAFALGMG LENIPKDFNK WLELAPCVLD AGVFYHKEVL QALEKEVILT PHPKEFLSLL KLVGINISML ELLDNKLEIA RDFSQKYPKV VLLLKGANTL IAHQGQVFIN ILGSVALAKA GSGDVLAGLI LSLLSQNYTP LDAAINASSA HALASLEFKN NYALTPLDLI EKIKQL // ID NDK_HELPY Reviewed; 137 AA. AC P56075; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Nucleoside diphosphate kinase; DE Short=NDK; DE Short=NDP kinase; DE EC=2.7.4.6; DE AltName: Full=Nucleoside-2-P kinase; GN Name=ndk; OrderedLocusNames=HP_0198; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Major role in the synthesis of nucleoside triphosphates CC other than ATP. The ATP gamma phosphate is transferred to the NDP CC beta phosphate via a ping-pong mechanism, using a phosphorylated CC active-site intermediate (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + nucleoside diphosphate = ADP + CC nucleoside triphosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the NDK family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07268.1; -; Genomic_DNA. DR PIR; F64544; F64544. DR RefSeq; NP_206997.1; NC_000915.1. DR RefSeq; WP_000813744.1; NC_018939.1. DR ProteinModelPortal; P56075; -. DR SMR; P56075; 3-132. DR STRING; 85962.HP0198; -. DR PaxDb; P56075; -. DR PRIDE; P56075; -. DR EnsemblBacteria; AAD07268; AAD07268; HP_0198. DR GeneID; 899081; -. DR KEGG; heo:C694_00985; -. DR KEGG; hpy:HP0198; -. DR PATRIC; 20591617; VBIHelPyl33062_0208. DR eggNOG; ENOG4108UGX; Bacteria. DR eggNOG; COG0105; LUCA. DR KO; K00940; -. DR OMA; AEHSERP; -. DR OrthoDB; EOG67DPRV; -. DR BioCyc; HPY:HP0198-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004550; F:nucleoside diphosphate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006241; P:CTP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006183; P:GTP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006228; P:UTP biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00451; NDP_kinase; 1. DR InterPro; IPR001564; Nucleoside_diP_kinase. DR InterPro; IPR023005; Nucleoside_diP_kinase_AS. DR Pfam; PF00334; NDK; 1. DR PRINTS; PR01243; NUCDPKINASE. DR SMART; SM00562; NDK; 1. DR PROSITE; PS00469; NDP_KINASES; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Kinase; Magnesium; KW Metal-binding; Nucleotide metabolism; Nucleotide-binding; KW Phosphoprotein; Reference proteome; Transferase. FT CHAIN 1 137 Nucleoside diphosphate kinase. FT /FTId=PRO_0000136992. FT ACT_SITE 116 116 Pros-phosphohistidine intermediate. FT {ECO:0000250}. FT BINDING 10 10 ATP. {ECO:0000250}. FT BINDING 58 58 ATP. {ECO:0000250}. FT BINDING 86 86 ATP. {ECO:0000250}. FT BINDING 92 92 ATP. {ECO:0000250}. FT BINDING 103 103 ATP. {ECO:0000250}. FT BINDING 113 113 ATP. {ECO:0000250}. SQ SEQUENCE 137 AA; 15286 MW; C103D5A7FAD42F63 CRC64; MKQRTLSIIK PDALKKKVVG KIIDRFESNG LEVVAMKRLH LSVKDAENFY AIHRERPFFK DLIEFMVSGP VVVMVLEGKD AVAKNRDLMG ATDPKLAQKG TIRADFAESI DANAVHGSDS LENAHNEIAF FFAARDL // ID NIXA_HELPY Reviewed; 331 AA. AC Q48262; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 98. DE RecName: Full=High-affinity nickel-transport protein NixA; GN Name=nixA; OrderedLocusNames=HP_1077; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 24-331. RC STRAIN=ATCC 43504; RX PubMed=7651142; DOI=10.1111/j.1365-2958.1995.tb02395.x; RA Mobley H.L.T., Garner R.M., Bauerfeind P.; RT "Helicobacter pylori nickel-transport gene nixA: synthesis of RT catalytically active urease in Escherichia coli independent of growth RT conditions."; RL Mol. Microbiol. 16:97-109(1995). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP TOPOLOGY. RX PubMed=10692379; DOI=10.1128/JB.182.6.1722-1730.2000; RA Fulkerson J.F. Jr., Mobley H.L.; RT "Membrane topology of the NixA nickel transporter of Helicobacter RT pylori: two nickel transport-specific motifs within transmembrane RT helices II and III."; RL J. Bacteriol. 182:1722-1730(2000). CC -!- FUNCTION: High-affinity nickel intake protein. Imports nickel ions CC in an energy-dependent fashion. Necessary for the expression of CC catalytically active urease. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the NiCoT transporter (TC 2.A.52) family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; Z48742; CAA88633.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08119.1; -; Genomic_DNA. DR PIR; E64654; S53113. DR RefSeq; NP_207868.1; NC_000915.1. DR RefSeq; WP_000780430.1; NC_018939.1. DR ProteinModelPortal; Q48262; -. DR DIP; DIP-3647N; -. DR IntAct; Q48262; 4. DR MINT; MINT-170893; -. DR STRING; 85962.HP1077; -. DR TCDB; 2.A.52.1.4; the ni(2+)-co(2+) transporter (nicot) family. DR PaxDb; Q48262; -. DR PRIDE; Q48262; -. DR EnsemblBacteria; AAD08119; AAD08119; HP_1077. DR GeneID; 899613; -. DR KEGG; heo:C694_05565; -. DR KEGG; hpy:HP1077; -. DR PATRIC; 20593493; VBIHelPyl33062_1126. DR eggNOG; ENOG4105D9G; Bacteria. DR eggNOG; COG3376; LUCA. DR KO; K07241; -. DR OMA; FLWKIKF; -. DR OrthoDB; EOG6C8N1X; -. DR BioCyc; HPY:HP1077-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0015099; F:nickel cation transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR004688; Ni/Co_transpt. DR InterPro; IPR011541; Ni/Co_transpt_high_affinity. DR Pfam; PF03824; NicO; 1. DR TIGRFAMs; TIGR00802; nico; 1. PE 1: Evidence at protein level; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Nickel; Reference proteome; Transmembrane; Transmembrane helix; KW Transport. FT CHAIN 1 331 High-affinity nickel-transport protein FT NixA. FT /FTId=PRO_0000194007. FT TOPO_DOM 1 5 Cytoplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 6 26 Helical. {ECO:0000305}. FT TOPO_DOM 27 33 Periplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 34 54 Helical. {ECO:0000305}. FT TOPO_DOM 55 66 Cytoplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 67 87 Helical. {ECO:0000305}. FT TOPO_DOM 88 113 Periplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 114 135 Helical. {ECO:0000305}. FT TOPO_DOM 136 178 Cytoplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 179 199 Helical. {ECO:0000305}. FT TOPO_DOM 200 225 Periplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 226 246 Helical. {ECO:0000305}. FT TOPO_DOM 247 252 Cytoplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 253 273 Helical. {ECO:0000305}. FT TOPO_DOM 274 302 Periplasmic. FT {ECO:0000305|PubMed:10692379}. FT TRANSMEM 303 322 Helical. {ECO:0000305}. FT TOPO_DOM 323 331 Cytoplasmic. FT {ECO:0000305|PubMed:10692379}. FT CONFLICT 293 294 RA -> NT (in Ref. 1; CAA88633). FT {ECO:0000305}. FT CONFLICT 303 303 L -> F (in Ref. 1; CAA88633). FT {ECO:0000305}. SQ SEQUENCE 331 AA; 37034 MW; C4EE36DDAAAD08EA CRC64; MKLWFPYFLA IVFLHALGLA LLFMANNASF YAAASMAYML GAKHAFDADH IACIDNTIRK LTQQGKNAYG VGFYFSMGHS SVVILMTIIS AFAIAWAKEH TPMLEEIGGV VGTLVSGLFL LIIGLLNAII LLDLLKIFKK SHSNESLSQQ QNEEIERLLT SRGLLNRFFK PLFNFVSKSW HIYPIGFLFG LGFDTASEIA LLALSSSAIK VSMVGMLSLP ILFAAGMSLF DTLDGAFMLK AYDWAFKTPL RKIYYNISIT ALSVFIALFI GLIELFQVVS EKLHLKFENR LLRALQSLEF TDLGYYLVGL FVIAFLGSFF LWKIKFSKLE S // ID NPD_HELPY Reviewed; 229 AA. AC O25849; DT 31-OCT-2003, integrated into UniProtKB/Swiss-Prot. DT 31-OCT-2003, sequence version 2. DT 11-NOV-2015, entry version 98. DE RecName: Full=NAD-dependent protein deacylase {ECO:0000255|HAMAP-Rule:MF_01121}; DE EC=3.5.1.- {ECO:0000255|HAMAP-Rule:MF_01121}; DE AltName: Full=Regulatory protein SIR2 homolog {ECO:0000255|HAMAP-Rule:MF_01121}; GN Name=cobB {ECO:0000255|HAMAP-Rule:MF_01121}; GN OrderedLocusNames=HP_1259; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NAD-dependent lysine deacetylase and desuccinylase that CC specifically removes acetyl and succinyl groups on target CC proteins. Modulates the activities of several proteins which are CC inactive in their acylated form. {ECO:0000255|HAMAP- CC Rule:MF_01121}. CC -!- CATALYTIC ACTIVITY: NAD(+) + an acetylprotein = nicotinamide + O- CC acetyl-ADP-ribose + a protein. {ECO:0000255|HAMAP-Rule:MF_01121}. CC -!- CATALYTIC ACTIVITY: NAD(+) + a succinylprotein = nicotinamide + O- CC succinyl-ADP-ribose + a protein. {ECO:0000255|HAMAP- CC Rule:MF_01121}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01121}. CC -!- DOMAIN: 2 residues (Tyr-53 and Arg-56) present in a large CC hydrophobic pocket are probably involved in substrate specificity. CC They are important for desuccinylation activity, but dispensable CC for deacetylation activity. {ECO:0000255|HAMAP-Rule:MF_01121}. CC -!- SIMILARITY: Belongs to the sirtuin family. Class III subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01121}. CC -!- SIMILARITY: Contains 1 deacetylase sirtuin-type domain. CC {ECO:0000255|HAMAP-Rule:MF_01121}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08305.1; Type=Frameshift; Positions=30; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08305.1; ALT_FRAME; Genomic_DNA. DR PIR; C64677; C64677. DR ProteinModelPortal; O25849; -. DR DIP; DIP-3690N; -. DR IntAct; O25849; 27. DR MINT; MINT-159370; -. DR STRING; 85962.HP1259; -. DR PaxDb; O25849; -. DR EnsemblBacteria; AAD08305; AAD08305; HP_1259. DR PATRIC; 20593895; VBIHelPyl33062_1318. DR eggNOG; ENOG4105NDF; Bacteria. DR eggNOG; COG0846; LUCA. DR OMA; QNVQCIN; -. DR OrthoDB; EOG6VQPX1; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0070403; F:NAD+ binding; IEA:InterPro. DR GO; GO:0036054; F:protein-malonyllysine demalonylase activity; IEA:InterPro. DR GO; GO:0036055; F:protein-succinyllysine desuccinylase activity; IEA:InterPro. DR Gene3D; 3.30.1600.10; -; 2. DR Gene3D; 3.40.50.1220; -; 3. DR HAMAP; MF_01121; Sirtuin_ClassIII; 1. DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom. DR InterPro; IPR003000; Sirtuin. DR InterPro; IPR026591; Sirtuin_cat_small_dom. DR InterPro; IPR027546; Sirtuin_class_III. DR InterPro; IPR026590; Ssirtuin_cat_dom. DR PANTHER; PTHR11085; PTHR11085; 1. DR Pfam; PF02146; SIR2; 1. DR SUPFAM; SSF52467; SSF52467; 1. DR PROSITE; PS50305; SIRTUIN; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Hydrolase; NAD; Reference proteome. FT CHAIN 1 229 NAD-dependent protein deacylase. FT /FTId=PRO_0000110321. FT DOMAIN 1 229 Deacetylase sirtuin-type. FT {ECO:0000255|HAMAP-Rule:MF_01121}. FT NP_BIND 9 28 NAD. {ECO:0000255|HAMAP-Rule:MF_01121}. FT NP_BIND 86 89 NAD. {ECO:0000255|HAMAP-Rule:MF_01121}. FT NP_BIND 169 171 NAD. {ECO:0000255|HAMAP-Rule:MF_01121}. FT ACT_SITE 104 104 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01121}. FT BINDING 53 53 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01121}. FT BINDING 56 56 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01121}. SQ SEQUENCE 229 AA; 25966 MW; 2A63984642FA702F CRC64; MKNLVILSGA GISAESGIKT FRDADGLWEG HDIMEVASPY GWKKNPQKVL DFYNQRRRQL FEVYPNKAHK ALAELEKHYQ VNIITQNVDD LHERAGSSRI LHLHGELLSV RSEKDPNLVY RWEKDLNLGD LAKDKSQLRP DIVWFGEAVP LLKEAISLVK QAHLLIIIGT SLQVYPAASL YTHAHKDALI YYIDPKAKNA HLPQNVQCIN ESAVHAMQDL MPKLIEMAS // ID NUOB_HELPY Reviewed; 159 AA. AC O25851; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; DE EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356}; DE AltName: Full=NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; DE AltName: Full=NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; GN Name=nuoB {ECO:0000255|HAMAP-Rule:MF_01356}; GN OrderedLocusNames=HP_1261; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. CC {ECO:0000255|HAMAP-Rule:MF_01356}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000255|HAMAP-Rule:MF_01356}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01356}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000255|HAMAP-Rule:MF_01356}; CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoB, C, D, E, F, and G constitute the peripheral sector of the CC complex. {ECO:0000255|HAMAP-Rule:MF_01356}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01356}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01356}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_01356}. CC -!- SIMILARITY: Belongs to the complex I 20 kDa subunit family. CC {ECO:0000255|HAMAP-Rule:MF_01356}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08307.1; -; Genomic_DNA. DR PIR; E64677; E64677. DR RefSeq; NP_208053.1; NC_000915.1. DR RefSeq; WP_001183511.1; NC_018939.1. DR ProteinModelPortal; O25851; -. DR SMR; O25851; 2-150. DR IntAct; O25851; 1. DR STRING; 85962.HP1261; -. DR PaxDb; O25851; -. DR PRIDE; O25851; -. DR EnsemblBacteria; AAD08307; AAD08307; HP_1261. DR GeneID; 900328; -. DR KEGG; heo:C694_06520; -. DR KEGG; hpy:HP1261; -. DR PATRIC; 20593899; VBIHelPyl33062_1320. DR eggNOG; ENOG4105ES3; Bacteria. DR eggNOG; COG0377; LUCA. DR KO; K00331; -. DR OMA; MRIWYRK; -. DR OrthoDB; EOG62K20C; -. DR BioCyc; HPY:HP1261-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.700; -; 1. DR HAMAP; MF_01356; NDH1_NuoB; 1. DR InterPro; IPR006137; NADH_UbQ_OxRdtase-like_20kDa. DR InterPro; IPR006138; NADH_UQ_OxRdtase_20Kd_su. DR Pfam; PF01058; Oxidored_q6; 1. DR TIGRFAMs; TIGR01957; nuoB_fam; 1. PE 3: Inferred from homology; KW 4Fe-4S; Cell inner membrane; Cell membrane; Complete proteome; Iron; KW Iron-sulfur; Membrane; Metal-binding; NAD; Oxidoreductase; Quinone; KW Reference proteome; Transport; Ubiquinone. FT CHAIN 1 159 NADH-quinone oxidoreductase subunit B. FT /FTId=PRO_0000376247. FT METAL 32 32 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01356}. FT METAL 33 33 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01356}. FT METAL 97 97 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01356}. FT METAL 126 126 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01356}. SQ SEQUENCE 159 AA; 17809 MW; 9F570928C2DB999B CRC64; MQQAPVVLST LDKLLNWGRS NSLWPLTYGL ACCAIEMMAT GGSRFDFDRF GTIFRASPRQ SDVMIIAGTL TKKHAEFMRR LYDQMPEPKW VISMGSCANT GGMFNTYATV QGADRVVPVD IYLPGCAPRP ETLQYALMVL QDKIRRSKAI KQDAPKRLV // ID NUSG_HELPY Reviewed; 176 AA. AC P55976; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Transcription termination/antitermination protein NusG {ECO:0000255|HAMAP-Rule:MF_00948}; GN Name=nusG {ECO:0000255|HAMAP-Rule:MF_00948}; GN OrderedLocusNames=HP_1203; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates in transcription elongation, termination CC and antitermination. {ECO:0000255|HAMAP-Rule:MF_00948}. CC -!- SIMILARITY: Belongs to the NusG family. {ECO:0000255|HAMAP- CC Rule:MF_00948}. CC -!- SIMILARITY: Contains 1 KOW domain. {ECO:0000255|HAMAP- CC Rule:MF_00948}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08249.1; -; Genomic_DNA. DR PIR; C64670; C64670. DR RefSeq; NP_207994.1; NC_000915.1. DR RefSeq; WP_000969542.1; NC_000915.1. DR ProteinModelPortal; P55976; -. DR IntAct; P55976; 7. DR STRING; 85962.HP1203; -. DR PaxDb; P55976; -. DR PRIDE; P55976; -. DR EnsemblBacteria; AAD08249; AAD08249; HP_1203. DR GeneID; 899966; -. DR KEGG; hpy:HP1203; -. DR PATRIC; 20593765; VBIHelPyl33062_1260. DR eggNOG; ENOG4105E5V; Bacteria. DR eggNOG; COG0250; LUCA. DR KO; K02601; -. DR OMA; AVHTYVG; -. DR OrthoDB; EOG6FFS95; -. DR BioCyc; HPY:HP1203-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006354; P:DNA-templated transcription, elongation; IEA:UniProtKB-HAMAP. DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-HAMAP. DR GO; GO:0032784; P:regulation of DNA-templated transcription, elongation; IEA:InterPro. DR GO; GO:0031564; P:transcription antitermination; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.30; -; 1. DR Gene3D; 3.30.70.940; -; 1. DR HAMAP; MF_00948; NusG; 1. DR InterPro; IPR005824; KOW. DR InterPro; IPR006645; NGN_dom. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR001062; Transcrpt_antiterm_NusG. DR InterPro; IPR015869; Transcrpt_antiterm_NusG_bac_CS. DR InterPro; IPR008991; Translation_prot_SH3-like. DR Pfam; PF00467; KOW; 1. DR Pfam; PF02357; NusG; 1. DR PRINTS; PR00338; NUSGTNSCPFCT. DR SMART; SM00739; KOW; 1. DR SMART; SM00738; NGN; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR SUPFAM; SSF82679; SSF82679; 1. DR TIGRFAMs; TIGR00922; nusG; 1. DR PROSITE; PS01014; NUSG; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Transcription; KW Transcription antitermination; Transcription regulation; KW Transcription termination. FT CHAIN 1 176 Transcription termination/antitermination FT protein NusG. FT /FTId=PRO_0000113930. FT DOMAIN 125 149 KOW. {ECO:0000255|HAMAP-Rule:MF_00948}. SQ SEQUENCE 176 AA; 20261 MW; A935EA647C4CCB27 CRC64; MMDWYAIQTY SGSEQSVKKA IENLANDHNI RDRIQEIIVP TEDIIEVSKK SKTKVTERSL YPGYVFIKVD LDTVLWHKIQ SLPRVSRFIG ENKKPTPLSE ADIGHILEKM NNRAAPKPKI FFEQGEVVRV VEGPFANFTA TVEEYDVEHR KLKLNVSIFG RNTPIEILHS QVEKII // ID NUPC_HELPY Reviewed; 418 AA. AC O25792; DT 20-JAN-2016, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE RecName: Full=Nucleoside permease NupC {ECO:0000305}; GN Name=nupC {ECO:0000303|PubMed:22701700}; GN OrderedLocusNames=HP_1180 {ECO:0000312|EMBL:AAD08224.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695; RX PubMed=22701700; DOI=10.1371/journal.pone.0038727; RA Miller E.F., Vaish S., Maier R.J.; RT "Efficiency of purine utilization by Helicobacter pylori: roles for RT adenosine deaminase and a NupC homolog."; RL PLoS ONE 7:E38727-E38727(2012). CC -!- FUNCTION: Involved in purine nucleosides uptake. Could also be CC involved in uptake of nucleobases. {ECO:0000269|PubMed:22701700}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Multi- CC pass membrane protein {ECO:0000255}. CC -!- DISRUPTION PHENOTYPE: Mutant is deficient for transport of CC inosine, guanosine or adenosine. {ECO:0000269|PubMed:22701700}. CC -!- SIMILARITY: Belongs to the concentrative nucleoside transporter CC (CNT) (TC 2.A.41) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08224.1; -; Genomic_DNA. DR PIR; D64667; D64667. DR RefSeq; NP_207971.1; NC_000915.1. DR RefSeq; WP_000577889.1; NC_018939.1. DR ProteinModelPortal; O25792; -. DR IntAct; O25792; 1. DR STRING; 85962.HP1180; -. DR PaxDb; O25792; -. DR EnsemblBacteria; AAD08224; AAD08224; HP_1180. DR GeneID; 899941; -. DR KEGG; heo:C694_06100; -. DR KEGG; hpy:HP1180; -. DR PATRIC; 20593713; VBIHelPyl33062_1235. DR eggNOG; ENOG4105D9N; Bacteria. DR eggNOG; COG1972; LUCA. DR KO; K03317; -. DR OMA; EFVAYMN; -. DR OrthoDB; EOG6V7BJ0; -. DR BioCyc; HPY:HP1180-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005337; F:nucleoside transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR008276; C_nuclsd_transpt. DR InterPro; IPR018270; C_nuclsd_transpt_met_bac. DR InterPro; IPR011657; CNT_C_dom. DR InterPro; IPR002668; CNT_N_dom. DR PANTHER; PTHR10590; PTHR10590; 1. DR Pfam; PF07662; Nucleos_tra2_C; 1. DR Pfam; PF01773; Nucleos_tra2_N; 1. DR TIGRFAMs; TIGR00804; nupC; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 418 Nucleoside permease NupC. FT /FTId=PRO_0000435285. FT TRANSMEM 2 22 Helical. {ECO:0000255}. FT TRANSMEM 34 54 Helical. {ECO:0000255}. FT TRANSMEM 93 113 Helical. {ECO:0000255}. FT TRANSMEM 174 194 Helical. {ECO:0000255}. FT TRANSMEM 198 218 Helical. {ECO:0000255}. FT TRANSMEM 264 284 Helical. {ECO:0000255}. FT TRANSMEM 292 314 Helical. {ECO:0000255}. FT TRANSMEM 354 374 Helical. {ECO:0000255}. FT TRANSMEM 395 415 Helical. {ECO:0000255}. SQ SEQUENCE 418 AA; 43807 MW; FA36B16734C330A8 CRC64; MIFSSLFSVV GMAVLFLIAW VFSSNKRAIN YRTIVSAFVI QVALGALALY VPLGREMLQG LASGIQSVIS YGYEGVRFLF GNLAPNAKGD QGIGGFVFAI NVLAIIIFFA SLISLLYYLK IMPLFINLIG GALQKCLGTS RAESMSAAAN IFVAHTEAPL VIKPYLKSMS DSEIFAVMCV GMASVAGPVL AGYASMGIPL PYLIAASFMS APGGLLFAKI IYPQNETISS HADVSIEKHV NAIEAIANGA STGLNLALHV GAMLLAFVGM LALINGLLGV VGGFLGMEHL SLGLILGTLL KPLAFMLGIP WSQAGIAGEI IGIKIALNEF VGYMQLLPYL GDNPPLILSE KTKAIITFAL CGFANLSSVA MLIGGLGSLV PKKKDLIVRL ALKAVLVGTL SNFMSATIAG LFIGLNAH // ID NUSB_HELPY Reviewed; 138 AA. AC O24853; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=N utilization substance protein B homolog; DE Short=Protein NusB; GN Name=nusB; OrderedLocusNames=HP_0001; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the transcription termination process. CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the NusB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07074.1; -; Genomic_DNA. DR PIR; A64520; A64520. DR RefSeq; NP_206803.1; NC_000915.1. DR RefSeq; WP_000235740.1; NC_018939.1. DR ProteinModelPortal; O24853; -. DR DIP; DIP-3047N; -. DR IntAct; O24853; 8. DR MINT; MINT-164319; -. DR STRING; 85962.HP0001; -. DR PaxDb; O24853; -. DR PRIDE; O24853; -. DR EnsemblBacteria; AAD07074; AAD07074; HP_0001. DR GeneID; 898756; -. DR KEGG; heo:C694_00005; -. DR KEGG; hpy:HP0001; -. DR PATRIC; 20591189; VBIHelPyl33062_0001. DR eggNOG; ENOG4105M7K; Bacteria. DR eggNOG; COG0781; LUCA. DR KO; K03625; -. DR OMA; GWSLERM; -. DR OrthoDB; EOG6RJV9B; -. DR BioCyc; HPY:HP0001-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.940.10; -; 1. DR HAMAP; MF_00073; NusB; 1. DR InterPro; IPR011605; NusB_fam. DR InterPro; IPR006027; NusB_RsmB_TIM44. DR PANTHER; PTHR11078; PTHR11078; 1. DR Pfam; PF01029; NusB; 1. DR SUPFAM; SSF48013; SSF48013; 1. DR TIGRFAMs; TIGR01951; nusB; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; RNA-binding; Transcription; KW Transcription regulation; Transcription termination. FT CHAIN 1 138 N utilization substance protein B FT homolog. FT /FTId=PRO_0000176545. SQ SEQUENCE 138 AA; 15521 MW; 4321C874F2064C84 CRC64; MATRTQARGA VVELLYAFES GNEEIKKIAS SMLEEKKIKN NQLAFALSLF NGVLEKINEI DALIEPHLKD WDFKRLGSME KAILRLGAYE IGFTPTQNPI IINECIELGK LYAEPNTPKF LNAILDSLSK KLTQKPLN // ID NUOD_HELPY Reviewed; 409 AA. AC O25853; DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=NADH-quinone oxidoreductase subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; DE EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358}; DE AltName: Full=NADH dehydrogenase I subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; DE AltName: Full=NDH-1 subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; GN Name=nuoD {ECO:0000255|HAMAP-Rule:MF_01358}; GN OrderedLocusNames=HP_1263; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. CC {ECO:0000255|HAMAP-Rule:MF_01358}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000255|HAMAP-Rule:MF_01358}. CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoB, C, D, E, F, and G constitute the peripheral sector of the CC complex. {ECO:0000255|HAMAP-Rule:MF_01358}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01358}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01358}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_01358}. CC -!- SIMILARITY: Belongs to the complex I 49 kDa subunit family. CC {ECO:0000255|HAMAP-Rule:MF_01358}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08309.1; -; Genomic_DNA. DR PIR; G64677; G64677. DR RefSeq; NP_208055.1; NC_000915.1. DR RefSeq; WP_000068242.1; NC_018939.1. DR ProteinModelPortal; O25853; -. DR DIP; DIP-3327N; -. DR IntAct; O25853; 3. DR MINT; MINT-174977; -. DR STRING; 85962.HP1263; -. DR PaxDb; O25853; -. DR PRIDE; O25853; -. DR EnsemblBacteria; AAD08309; AAD08309; HP_1263. DR GeneID; 898918; -. DR KEGG; heo:C694_06530; -. DR KEGG; hpy:HP1263; -. DR PATRIC; 20593903; VBIHelPyl33062_1322. DR eggNOG; ENOG4105CQV; Bacteria. DR eggNOG; COG0649; LUCA. DR KO; K00333; -. DR OMA; HRCFEKH; -. DR OrthoDB; EOG62G5MP; -. DR BioCyc; HPY:HP1263-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.645.10; -; 1. DR HAMAP; MF_01358; NDH1_NuoD; 1. DR InterPro; IPR001135; NADH_Q_OxRdtase_suD. DR InterPro; IPR022885; NDH1_su_D/H. DR InterPro; IPR029014; NiFe_Hase-like. DR Pfam; PF00346; Complex1_49kDa; 1. DR SUPFAM; SSF56762; SSF56762; 1. DR TIGRFAMs; TIGR01962; NuoD; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; NAD; KW Oxidoreductase; Quinone; Reference proteome; Transport; Ubiquinone. FT CHAIN 1 409 NADH-quinone oxidoreductase subunit D. FT /FTId=PRO_0000371877. SQ SEQUENCE 409 AA; 46757 MW; 8FCE933C52C2110E CRC64; MAQNFTKLNP QFENIIFEHD DNQMILNFGP QHPSSHGQLR LILELEGEKI IKATPEIGYL HRGCEKLGEN MTYNEYMPTT DRLDYTSSTS NNYAYAYAVE TLLNLEIPRR AQVIRTILLE LNRMISHIFF ISVHALDVGA MSVFLYAFKT REYGLDLMED YCGARLTHNA IRIGGVPLDL PPNWLEGLKK FLGEMRECKK LIQGLLDKNR IWRMRLENVG VVTQKMAQSW GMSGIMLRGT GIAYDIRKEE PYELYKELDF DVPVGNYGDS YDRYCLYMLE IDESVRIIEQ LIPMYAKTDT PIMAQNPHYI SAPKEDIMTQ NYALMQHFVL VAQGMRPPVG EVYAPTESPK GELGFFIHSE GEPYPHRLKI RAPSFYHIGA LSDILVGQYL ADAVTVIGST NAVFGEVDR // ID NUOH_HELPY Reviewed; 329 AA. AC O25857; DT 13-JUN-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=NADH-quinone oxidoreductase subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; DE EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350}; DE AltName: Full=NADH dehydrogenase I subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; DE AltName: Full=NDH-1 subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; GN Name=nuoH {ECO:0000255|HAMAP-Rule:MF_01350}; GN OrderedLocusNames=HP_1267; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. This subunit may CC bind ubiquinone. {ECO:0000255|HAMAP-Rule:MF_01350}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000255|HAMAP-Rule:MF_01350}. CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoA, H, J, K, L, M, N constitute the membrane sector of the CC complex. {ECO:0000255|HAMAP-Rule:MF_01350}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01350}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01350}. CC -!- SIMILARITY: Belongs to the complex I subunit 1 family. CC {ECO:0000255|HAMAP-Rule:MF_01350}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08311.1; -; Genomic_DNA. DR PIR; C64678; C64678. DR RefSeq; NP_208059.1; NC_000915.1. DR RefSeq; WP_001277308.1; NC_018939.1. DR ProteinModelPortal; O25857; -. DR DIP; DIP-3086N; -. DR IntAct; O25857; 2. DR MINT; MINT-181256; -. DR STRING; 85962.HP1267; -. DR PaxDb; O25857; -. DR PRIDE; O25857; -. DR DNASU; 898785; -. DR EnsemblBacteria; AAD08311; AAD08311; HP_1267. DR GeneID; 898785; -. DR KEGG; heo:C694_06550; -. DR KEGG; hpy:HP1267; -. DR PATRIC; 20593911; VBIHelPyl33062_1326. DR eggNOG; ENOG4105CMZ; Bacteria. DR eggNOG; COG1005; LUCA. DR KO; K00337; -. DR OMA; LDLGWKF; -. DR OrthoDB; EOG6B62B4; -. DR BioCyc; HPY:HP1267-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016655; F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; IEA:UniProtKB-HAMAP. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR HAMAP; MF_01350; NDH1_NuoH; 1. DR InterPro; IPR001694; NADH_UbQ_OxRdtase_su1/FPO. DR InterPro; IPR018086; NADH_UbQ_OxRdtase_su1_CS. DR PANTHER; PTHR11432; PTHR11432; 1. DR Pfam; PF00146; NADHdh; 1. DR PROSITE; PS00667; COMPLEX1_ND1_1; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; NAD; KW Oxidoreductase; Quinone; Reference proteome; Transmembrane; KW Transmembrane helix; Ubiquinone. FT CHAIN 1 329 NADH-quinone oxidoreductase subunit H. FT /FTId=PRO_0000240079. FT TRANSMEM 9 29 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 42 62 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 75 95 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 117 137 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 154 174 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 188 208 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 238 258 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 269 291 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. FT TRANSMEM 309 329 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01350}. SQ SEQUENCE 329 AA; 36345 MW; 8356AEE6C434E9D0 CRC64; MSAYIIETLI KILILVAVFS ALGGFATYIE RKVLAYFQRR LGPCYVGPFG LLQVAADGIK LFTKEDIIPQ GANKFIFTLA PIIAMVSAFV SMAPIPFFPN FTLFGYEIKP LISDINIGFL FFLAVGSAGI YAPILAGLAS NNKYSLIGSA RATIQLLSFE VVSTLTILAP LMVVGSLSLV EINHYQSGGF LDWLVFKQPL AFVLFLIASY AELNRTPFDL LEHEAEIVAG YCTEYSGLKW GMFFLAEYAH LFAFSFVISI VFFGGFNAWG FIPGGIAILI KAGFFVFLSM WVRATYPHVR PDQLMDMCWK IMLPLALLNI VLTGIIILI // ID NUOI_HELPY Reviewed; 220 AA. AC O25858; DT 11-JUL-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=NADH-quinone oxidoreductase subunit I {ECO:0000255|HAMAP-Rule:MF_01351}; DE EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01351}; DE AltName: Full=NADH dehydrogenase I subunit I {ECO:0000255|HAMAP-Rule:MF_01351}; DE AltName: Full=NDH-1 subunit I {ECO:0000255|HAMAP-Rule:MF_01351}; GN Name=nuoI {ECO:0000255|HAMAP-Rule:MF_01351}; GN OrderedLocusNames=HP_1268; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. CC {ECO:0000255|HAMAP-Rule:MF_01351}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000255|HAMAP-Rule:MF_01351}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01351}; CC Note=Binds 2 [4Fe-4S] clusters per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01351}; CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoA, H, J, K, L, M, N constitute the membrane sector of the CC complex. {ECO:0000255|HAMAP-Rule:MF_01351}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01351}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01351}. CC -!- SIMILARITY: Belongs to the complex I 23 kDa subunit family. CC {ECO:0000255|HAMAP-Rule:MF_01351}. CC -!- SIMILARITY: Contains 2 4Fe-4S ferredoxin-type domains. CC {ECO:0000255|HAMAP-Rule:MF_01351}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08312.1; -; Genomic_DNA. DR PIR; D64678; D64678. DR RefSeq; NP_208060.1; NC_000915.1. DR RefSeq; WP_001118555.1; NC_018939.1. DR ProteinModelPortal; O25858; -. DR IntAct; O25858; 2. DR STRING; 85962.HP1268; -. DR PaxDb; O25858; -. DR PRIDE; O25858; -. DR EnsemblBacteria; AAD08312; AAD08312; HP_1268. DR GeneID; 898843; -. DR KEGG; heo:C694_06555; -. DR KEGG; hpy:HP1268; -. DR PATRIC; 20593913; VBIHelPyl33062_1327. DR eggNOG; ENOG4105P3U; Bacteria. DR eggNOG; COG1143; LUCA. DR KO; K00338; -. DR OMA; TINLGRC; -. DR OrthoDB; EOG6XM7H5; -. DR BioCyc; HPY:HP1268-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR HAMAP; MF_01351; NDH1_NuoI; 1. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR009051; Helical_ferredxn. DR InterPro; IPR010226; NADH_quinone_OxRdtase_chainI. DR Pfam; PF12838; Fer4_7; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR TIGRFAMs; TIGR01971; NuoI; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 3: Inferred from homology; KW 4Fe-4S; Cell inner membrane; Cell membrane; Complete proteome; Iron; KW Iron-sulfur; Membrane; Metal-binding; NAD; Oxidoreductase; Quinone; KW Reference proteome; Repeat; Ubiquinone. FT CHAIN 1 220 NADH-quinone oxidoreductase subunit I. FT /FTId=PRO_0000245713. FT DOMAIN 71 102 4Fe-4S ferredoxin-type 1. FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT DOMAIN 112 141 4Fe-4S ferredoxin-type 2. FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 82 82 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 85 85 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 88 88 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 92 92 Iron-sulfur 2 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 121 121 Iron-sulfur 2 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 124 124 Iron-sulfur 2 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 127 127 Iron-sulfur 2 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. FT METAL 131 131 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000255|HAMAP-Rule:MF_01351}. SQ SEQUENCE 220 AA; 24715 MW; 13E5931E015E27CF CRC64; MAKQEYKQLP KRAEVHSATE QFKDTVKTSL GLDLFKGLGL TIKEFFSPSV TIHYPMEQLP LSPRYRAVHN LQRLLDSGSE RCIGCGLCEK ICTSNCIRII THKGEDNRKK IDSYTINLGR CIYCGLCAEV CPELAIVMGN RFENASTQRS QYGSKSEFLT SEQDAKNCSH AEFLGFGAVS PNYNERMQAT PLDYVQEPSK EESQEETPTN PESNKGDENV // ID OBG_HELPY Reviewed; 360 AA. AC O25074; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 96. DE RecName: Full=GTPase Obg {ECO:0000255|HAMAP-Rule:MF_01454}; DE EC=3.6.5.- {ECO:0000255|HAMAP-Rule:MF_01454}; DE AltName: Full=GTP-binding protein Obg {ECO:0000255|HAMAP-Rule:MF_01454}; GN Name=obg {ECO:0000255|HAMAP-Rule:MF_01454}; OrderedLocusNames=HP_0303; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: An essential GTPase which binds GTP, GDP and possibly CC (p)ppGpp with moderate affinity, with high nucleotide exchange CC rates and a fairly low GTP hydrolysis rate. Plays a role in CC control of the cell cycle, stress response, ribosome biogenesis CC and in those bacteria that undergo differentiation, in CC morphogenesis control. {ECO:0000255|HAMAP-Rule:MF_01454}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01454}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01454}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01454}. CC -!- SIMILARITY: Belongs to the TRAFAC class OBG-HflX-like GTPase CC superfamily. OBG GTPase family. {ECO:0000255|HAMAP-Rule:MF_01454}. CC -!- SIMILARITY: Contains 1 OBG-type G (guanine nucleotide-binding) CC domain. {ECO:0000255|HAMAP-Rule:MF_01454}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07372.1; -; Genomic_DNA. DR PIR; G64557; G64557. DR RefSeq; NP_207101.1; NC_000915.1. DR RefSeq; WP_000497238.1; NC_018939.1. DR ProteinModelPortal; O25074; -. DR SMR; O25074; 1-286. DR DIP; DIP-3205N; -. DR IntAct; O25074; 5. DR MINT; MINT-165011; -. DR STRING; 85962.HP0303; -. DR PaxDb; O25074; -. DR PRIDE; O25074; -. DR EnsemblBacteria; AAD07372; AAD07372; HP_0303. DR GeneID; 899201; -. DR KEGG; heo:C694_01530; -. DR KEGG; hpy:HP0303; -. DR PATRIC; 20591833; VBIHelPyl33062_0314. DR eggNOG; ENOG4105C9R; Bacteria. DR eggNOG; COG0536; LUCA. DR KO; K03979; -. DR OMA; MLDKQRV; -. DR OrthoDB; EOG6H1Q1M; -. DR BioCyc; HPY:HP0303-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-HAMAP. DR Gene3D; 2.70.210.12; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_01454; GTPase_Obg; 1. DR InterPro; IPR031167; G_OBG. DR InterPro; IPR014100; GTP-bd_Obg/CgtA. DR InterPro; IPR006074; GTP1-OBG_CS. DR InterPro; IPR006169; GTP1_OBG_dom. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11702:SF3; PTHR11702:SF3; 1. DR Pfam; PF01018; GTP1_OBG; 1. DR Pfam; PF01926; MMR_HSR1; 1. DR PIRSF; PIRSF002401; GTP_bd_Obg/CgtA; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF82051; SSF82051; 1. DR TIGRFAMs; TIGR02729; Obg_CgtA; 1. DR PROSITE; PS51710; G_OBG; 1. DR PROSITE; PS00905; GTP1_OBG; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Hydrolase; Magnesium; KW Metal-binding; Nucleotide-binding; Reference proteome. FT CHAIN 1 360 GTPase Obg. FT /FTId=PRO_0000205439. FT DOMAIN 157 360 OBG-type G. {ECO:0000255|HAMAP- FT Rule:MF_01454}. FT NP_BIND 163 170 GTP. {ECO:0000255|HAMAP-Rule:MF_01454}. FT NP_BIND 188 192 GTP. {ECO:0000255|HAMAP-Rule:MF_01454}. FT NP_BIND 210 213 GTP. {ECO:0000255|HAMAP-Rule:MF_01454}. FT NP_BIND 279 282 GTP. {ECO:0000255|HAMAP-Rule:MF_01454}. FT NP_BIND 341 343 GTP. {ECO:0000255|HAMAP-Rule:MF_01454}. FT METAL 170 170 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01454}. FT METAL 190 190 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01454}. SQ SEQUENCE 360 AA; 38708 MW; 74FC579D99643DAC CRC64; MFVDSVEIII ASGKGGPGMV SFRREKFVIK GGPDGGDGGD GGDVYFEVDN NTDTLASFRG TKHHKAKNGA PGGTRNCAGK KGEDKIIVVP PGTQVFVGDE LWLDLVEPKE RVLALKGGKG GLGNAHFKSA TKQQPTYAQK GLEGVEKCVR LELKLIADIG LVGFPNAGKS TLISTISNAK PKIANYEFTT LVPNLGVVSV DEKSGFLMAD IPGIIEGASE GKGLGISFLK HIERTKVLAF VLDASRLDLG IKEQYQRLRL ELEKFSSALA NKPFGVLLNK CDVVENIDEM TKDFCAFLNL GAQKLNEFGL EPYLGFLHPH LTNDFENNPN EQSALFVLPL SAVSALNVHA LKFVLLEALP // ID NUOK_HELPY Reviewed; 100 AA. AC O25860; DT 15-DEC-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 86. DE RecName: Full=NADH-quinone oxidoreductase subunit K {ECO:0000255|HAMAP-Rule:MF_01456}; DE EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01456}; DE AltName: Full=NADH dehydrogenase I subunit K {ECO:0000255|HAMAP-Rule:MF_01456}; DE AltName: Full=NDH-1 subunit K {ECO:0000255|HAMAP-Rule:MF_01456}; GN Name=nuoK {ECO:0000255|HAMAP-Rule:MF_01456}; GN OrderedLocusNames=HP_1270; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. CC {ECO:0000255|HAMAP-Rule:MF_01456}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000255|HAMAP-Rule:MF_01456}. CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoA, H, J, K, L, M, N constitute the membrane sector of the CC complex. {ECO:0000255|HAMAP-Rule:MF_01456}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01456}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01456}. CC -!- SIMILARITY: Belongs to the complex I subunit 4L family. CC {ECO:0000255|HAMAP-Rule:MF_01456}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08314.1; -; Genomic_DNA. DR PIR; F64678; F64678. DR RefSeq; NP_208062.1; NC_000915.1. DR RefSeq; WP_000579761.1; NC_018939.1. DR ProteinModelPortal; O25860; -. DR STRING; 85962.HP1270; -. DR PaxDb; O25860; -. DR PRIDE; O25860; -. DR EnsemblBacteria; AAD08314; AAD08314; HP_1270. DR GeneID; 898786; -. DR KEGG; heo:C694_06565; -. DR KEGG; hpy:HP1270; -. DR PATRIC; 20593917; VBIHelPyl33062_1329. DR eggNOG; ENOG4105M5H; Bacteria. DR eggNOG; COG0713; LUCA. DR KO; K00340; -. DR OMA; NFVAFSY; -. DR OrthoDB; EOG6MSS3R; -. DR BioCyc; HPY:HP1270-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR HAMAP; MF_01456; NDH1_NuoK; 1. DR InterPro; IPR001133; NADH_UbQ_OxRdtase_chain4L/K. DR PANTHER; PTHR11434; PTHR11434; 1. DR Pfam; PF00420; Oxidored_q2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; NAD; KW Oxidoreductase; Quinone; Reference proteome; Transmembrane; KW Transmembrane helix; Transport; Ubiquinone. FT CHAIN 1 100 NADH-quinone oxidoreductase subunit K. FT /FTId=PRO_0000390091. FT TRANSMEM 1 21 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01456}. FT TRANSMEM 28 48 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01456}. FT TRANSMEM 64 84 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01456}. SQ SEQUENCE 100 AA; 11009 MW; 2F52854BB8DD1E56 CRC64; MIGLNHYLIV SGLLFCIGLA GMLKRKNILL LFFSTEIMLN AINIGFVAIS KYTHNLDGQM FALFIISIAA SEVAIGLGLV ILWFKKFKSL DIDSLNAMKG // ID NUSA_HELPY Reviewed; 395 AA. AC P55977; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=Transcription termination/antitermination protein NusA {ECO:0000255|HAMAP-Rule:MF_00945}; GN Name=nusA {ECO:0000255|HAMAP-Rule:MF_00945}; GN OrderedLocusNames=HP_1514; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates in both transcription termination and CC antitermination. {ECO:0000255|HAMAP-Rule:MF_00945}. CC -!- SUBUNIT: Monomer. Binds directly to the core enzyme of the DNA- CC dependent RNA polymerase and to nascent RNA. {ECO:0000255|HAMAP- CC Rule:MF_00945}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00945}. CC -!- SIMILARITY: Belongs to the NusA family. {ECO:0000255|HAMAP- CC Rule:MF_00945}. CC -!- SIMILARITY: Contains 2 KH domains. {ECO:0000255|HAMAP- CC Rule:MF_00945}. CC -!- SIMILARITY: Contains 1 S1 motif domain. {ECO:0000255|HAMAP- CC Rule:MF_00945}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08555.1; -; Genomic_DNA. DR PIR; B64709; B64709. DR RefSeq; NP_208305.1; NC_000915.1. DR RefSeq; WP_000411646.1; NC_018939.1. DR ProteinModelPortal; P55977; -. DR DIP; DIP-3664N; -. DR IntAct; P55977; 8. DR MINT; MINT-4077929; -. DR STRING; 85962.HP1514; -. DR PaxDb; P55977; -. DR PRIDE; P55977; -. DR EnsemblBacteria; AAD08555; AAD08555; HP_1514. DR GeneID; 899777; -. DR KEGG; heo:C694_07845; -. DR KEGG; hpy:HP1514; -. DR PATRIC; 20594445; VBIHelPyl33062_1591. DR eggNOG; ENOG4105CHV; Bacteria. DR eggNOG; COG0195; LUCA. DR KO; K02600; -. DR OMA; HNSRIDP; -. DR OrthoDB; EOG6NSGHW; -. DR BioCyc; HPY:HP1514-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-HAMAP. DR GO; GO:0031564; P:transcription antitermination; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.30.1480.10; -; 1. DR Gene3D; 3.30.300.20; -; 2. DR HAMAP; MF_00945_B; NusA_B; 1. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR025249; KH_dom_NusA-like. DR InterPro; IPR009019; KH_prok-type. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR030842; NusA_bac. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR InterPro; IPR013735; TF_NusA_N. DR InterPro; IPR010213; Tscrpt_termination_fac_NusA. DR Pfam; PF13184; KH_5; 1. DR Pfam; PF08529; NusA_N; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF54814; SSF54814; 1. DR SUPFAM; SSF69705; SSF69705; 1. DR TIGRFAMs; TIGR01953; NusA; 1. DR PROSITE; PS50126; S1; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Reference proteome; Repeat; RNA-binding; KW Transcription; Transcription antitermination; KW Transcription regulation; Transcription termination. FT CHAIN 1 395 Transcription termination/antitermination FT protein NusA. FT /FTId=PRO_0000181969. FT DOMAIN 137 201 S1 motif. {ECO:0000255|HAMAP- FT Rule:MF_00945}. FT DOMAIN 243 291 KH 1. {ECO:0000255|HAMAP-Rule:MF_00945}. FT DOMAIN 331 378 KH 2. {ECO:0000255|HAMAP-Rule:MF_00945}. SQ SEQUENCE 395 AA; 44650 MW; DDFB533B2FC53E2B CRC64; MEKISDLIEC IAYEKNLPKE MISKVIQGCL LKMAQNELDP LARYLVVEEN KQLQLIQLVE VLEDGDERLV NDPSKYISLS KAKEMDPSVK IKDELSYSLS LESMKQGAIN RLFKDLQYQL EKALEDSHFE AFQKRLNSVL MGQVILVDHN QNTFIEIEQQ FQGVLSMRHR IKGESFKVGD SIKAVLTQVK RTKKGLLLEL SRTTPKMLEA LLELEVPEIK DKEIEIIHCA RIPGNRAKVS FFSHNARIDP IGAAVGVKGV RINAISNELN KENIDCIEYS NVPEIYITLA LAPAKILSVE IKKIPIEELN AEEKESIQER FIVNNHLQKA KVRLLDIEKS KAIGKGGVNV CLASMLTGYH IEFETIPSVK ENAENESEKE TPKVGVEALE SLFKN // ID PANC_HELPY Reviewed; 276 AA. AC P56061; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Pantothenate synthetase {ECO:0000255|HAMAP-Rule:MF_00158}; DE Short=PS {ECO:0000255|HAMAP-Rule:MF_00158}; DE EC=6.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00158}; DE AltName: Full=Pantoate--beta-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00158}; DE AltName: Full=Pantoate-activating enzyme {ECO:0000255|HAMAP-Rule:MF_00158}; GN Name=panC {ECO:0000255|HAMAP-Rule:MF_00158}; GN OrderedLocusNames=HP_0006; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the condensation of pantoate with beta-alanine CC in an ATP-dependent reaction via a pantoyl-adenylate intermediate. CC {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- CATALYTIC ACTIVITY: ATP + (R)-pantoate + beta-alanine = AMP + CC diphosphate + (R)-pantothenate. {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; CC (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- MISCELLANEOUS: The reaction proceeds by a bi uni uni bi ping pong CC mechanism. {ECO:0000255|HAMAP-Rule:MF_00158}. CC -!- SIMILARITY: Belongs to the pantothenate synthetase family. CC {ECO:0000255|HAMAP-Rule:MF_00158}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07079.1; -; Genomic_DNA. DR PIR; F64520; F64520. DR RefSeq; NP_206808.1; NC_000915.1. DR RefSeq; WP_001264323.1; NC_018939.1. DR ProteinModelPortal; P56061; -. DR DIP; DIP-3102N; -. DR IntAct; P56061; 3. DR MINT; MINT-161748; -. DR STRING; 85962.HP0006; -. DR PaxDb; P56061; -. DR PRIDE; P56061; -. DR EnsemblBacteria; AAD07079; AAD07079; HP_0006. DR GeneID; 898828; -. DR KEGG; heo:C694_00030; -. DR KEGG; hpy:HP0006; -. DR PATRIC; 20591199; VBIHelPyl33062_0006. DR eggNOG; ENOG4108IAA; Bacteria. DR eggNOG; COG0414; LUCA. DR KO; K01918; -. DR OMA; GAMRKGH; -. DR OrthoDB; EOG6Z6FZ4; -. DR BioCyc; HPY:HP0006-MONOMER; -. DR UniPathway; UPA00028; UER00005. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004592; F:pantoate-beta-alanine ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00158; PanC; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR003721; Pantoate_ligase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR PANTHER; PTHR21299:SF1; PTHR21299:SF1; 1. DR Pfam; PF02569; Pantoate_ligase; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. DR TIGRFAMs; TIGR00018; panC; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Ligase; Nucleotide-binding; KW Pantothenate biosynthesis; Reference proteome. FT CHAIN 1 276 Pantothenate synthetase. FT /FTId=PRO_0000128235. FT NP_BIND 27 34 ATP. {ECO:0000255|HAMAP-Rule:MF_00158}. FT NP_BIND 147 150 ATP. {ECO:0000255|HAMAP-Rule:MF_00158}. FT NP_BIND 184 187 ATP. {ECO:0000255|HAMAP-Rule:MF_00158}. FT ACT_SITE 34 34 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00158}. FT BINDING 58 58 Beta-alanine. {ECO:0000255|HAMAP- FT Rule:MF_00158}. FT BINDING 58 58 Pantoate. {ECO:0000255|HAMAP- FT Rule:MF_00158}. FT BINDING 153 153 Pantoate. {ECO:0000255|HAMAP- FT Rule:MF_00158}. FT BINDING 176 176 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00158}. SQ SEQUENCE 276 AA; 31205 MW; 80F081F6E5AA4085 CRC64; MRVLETIVAL REYRKSLEES VGFVPTMGAL HKGHQSLIER SLKENSHTIV SVFVNPTQFG ANEDFNAYPR PLEKDLALCE KLGVNAVFVP KIGEMYPYEA EQRLKLYAPK FLSSSLEGAM RKGHFDGVVQ IVLKMFHLVN PTRAYFGKKD AQQLLIIEHL VKDLLLDIEI APCEIVRDDD NLALSSRNVY LNATQRKQAL AIPKALEKIQ QAIDKGEKAC EKLKKLGLEI LETLEVDYLE CCNHKLEPLT IIEPTNTLIL VAARVGKTRL LDNLWV // ID PANB_HELPY Reviewed; 270 AA. AC O25698; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; DE EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156}; DE AltName: Full=Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; DE Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156}; GN Name=panB {ECO:0000255|HAMAP-Rule:MF_00156}; GN OrderedLocusNames=HP_1058; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible reaction in which hydroxymethyl CC group from 5,10-methylenetetrahydrofolate is tranferred onto CC alpha-ketoisovalerate to form ketopantoate. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + 3-methyl-2- CC oxobutanoate + H(2)O = tetrahydrofolate + 2-dehydropantoate. CC {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00156}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00156}; CC -!- PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; CC (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2. CC {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- SUBUNIT: Homodecamer; pentamer of dimers. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- SIMILARITY: Belongs to the PanB family. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08099.1; -; Genomic_DNA. DR PIR; B64652; B64652. DR RefSeq; NP_207849.1; NC_000915.1. DR RefSeq; WP_000062669.1; NC_018939.1. DR ProteinModelPortal; O25698; -. DR STRING; 85962.HP1058; -. DR PaxDb; O25698; -. DR PRIDE; O25698; -. DR EnsemblBacteria; AAD08099; AAD08099; HP_1058. DR GeneID; 899593; -. DR KEGG; heo:C694_05470; -. DR KEGG; hpy:HP1058; -. DR PATRIC; 20593453; VBIHelPyl33062_1107. DR eggNOG; ENOG4105CCG; Bacteria. DR eggNOG; COG0413; LUCA. DR KO; K00606; -. DR OMA; DMLGFFD; -. DR OrthoDB; EOG63C0WN; -. DR BioCyc; HPY:HP1058-MONOMER; -. DR UniPathway; UPA00028; UER00003. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003864; F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.60; -; 1. DR HAMAP; MF_00156; PanB; 1. DR InterPro; IPR003700; Pantoate_hydroxy_MeTrfase. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR PANTHER; PTHR20881; PTHR20881; 1. DR Pfam; PF02548; Pantoate_transf; 1. DR PIRSF; PIRSF000388; Pantoate_hydroxy_MeTrfase; 1. DR SUPFAM; SSF51621; SSF51621; 1. DR TIGRFAMs; TIGR00222; panB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Magnesium; Metal-binding; KW Pantothenate biosynthesis; Reference proteome; Transferase. FT CHAIN 1 270 3-methyl-2-oxobutanoate FT hydroxymethyltransferase. FT /FTId=PRO_0000184850. FT REGION 50 51 Alpha-ketoisovalerate binding. FT {ECO:0000255|HAMAP-Rule:MF_00156}. FT ACT_SITE 187 187 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 50 50 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 89 89 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 120 120 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT BINDING 89 89 Alpha-ketoisovalerate. FT {ECO:0000255|HAMAP-Rule:MF_00156}. FT BINDING 118 118 Alpha-ketoisovalerate. FT {ECO:0000255|HAMAP-Rule:MF_00156}. SQ SEQUENCE 270 AA; 29920 MW; B5E65F994C15E6C8 CRC64; MSMQTAPIKK ITLNHLQAKK NQEKIIAITA YDALFAQIFD PLVDVILVGD SLNMSFFNQN DTLSASVEMM LYHTKAVCAG AKTPFIITDM PFGSYKDEKT ALKNAIRVYK ETQASAIKLE GGKEKAKLVK TLTNEGVIVV GHIGLMPQFV RLDGGYKIKG KNEEQQKKLL EDALSLEEAG VGLLVLEGIT TPIAQKITQK IKIPTIGIGS GKDCDGQILV WSDMLGFFDS FKPKFVREYL KGKELIQNAI KQYADDVKKG NFPNELESYH // ID P5CR_HELPY Reviewed; 257 AA. AC O25773; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 104. DE RecName: Full=Pyrroline-5-carboxylate reductase {ECO:0000255|HAMAP-Rule:MF_01925}; DE Short=P5C reductase {ECO:0000255|HAMAP-Rule:MF_01925}; DE Short=P5CR {ECO:0000255|HAMAP-Rule:MF_01925}; DE EC=1.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01925}; DE AltName: Full=PCA reductase {ECO:0000255|HAMAP-Rule:MF_01925}; GN Name=proC {ECO:0000255|HAMAP-Rule:MF_01925}; GN OrderedLocusNames=HP_1158; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reduction of 1-pyrroline-5-carboxylate CC (PCA) to L-proline. {ECO:0000255|HAMAP-Rule:MF_01925}. CC -!- CATALYTIC ACTIVITY: L-proline + NAD(P)(+) = 1-pyrroline-5- CC carboxylate + NAD(P)H. {ECO:0000255|HAMAP-Rule:MF_01925}. CC -!- PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L- CC proline from L-glutamate 5-semialdehyde: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01925}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01925}. CC -!- SIMILARITY: Belongs to the pyrroline-5-carboxylate reductase CC family. {ECO:0000255|HAMAP-Rule:MF_01925}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08197.1; -; Genomic_DNA. DR PIR; F64664; F64664. DR RefSeq; NP_207949.1; NC_000915.1. DR RefSeq; WP_000404448.1; NC_018939.1. DR ProteinModelPortal; O25773; -. DR DIP; DIP-3659N; -. DR IntAct; O25773; 4. DR MINT; MINT-160980; -. DR STRING; 85962.HP1158; -. DR PaxDb; O25773; -. DR PRIDE; O25773; -. DR EnsemblBacteria; AAD08197; AAD08197; HP_1158. DR GeneID; 899918; -. DR KEGG; heo:C694_05980; -. DR KEGG; hpy:HP1158; -. DR PATRIC; 20593667; VBIHelPyl33062_1212. DR eggNOG; ENOG4105II7; Bacteria. DR eggNOG; COG0345; LUCA. DR KO; K00286; -. DR OMA; CMPNIAS; -. DR OrthoDB; EOG6JB16S; -. DR BioCyc; HPY:HP1158-MONOMER; -. DR UniPathway; UPA00098; UER00361. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004735; F:pyrroline-5-carboxylate reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0055129; P:L-proline biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 1.10.3730.10; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_01925; P5C_reductase; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR029036; P5CR_dimer. DR InterPro; IPR028939; ProC_N. DR InterPro; IPR000304; Pyrroline-COOH_reductase. DR PANTHER; PTHR11645; PTHR11645; 1. DR Pfam; PF03807; F420_oxidored; 1. DR Pfam; PF14748; P5CR_dimer; 1. DR PIRSF; PIRSF000193; Pyrrol-5-carb_rd; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00112; proC; 1. DR PROSITE; PS00521; P5CR; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; NADP; KW Oxidoreductase; Proline biosynthesis; Reference proteome. FT CHAIN 1 257 Pyrroline-5-carboxylate reductase. FT /FTId=PRO_0000187291. SQ SEQUENCE 257 AA; 28162 MW; 62F390B35EE5D23D CRC64; MEILQFIGYG NMAQAILEGA HEILSKRFIL EITGRNPEKI APFLQEKNIQ AQIVPYKDAI DIHQKFVFLL FKPYNLKDFN YQGQAKSVLS ALAGVGFKAL SDAIDSLHYL KCMPNIASKF ALSSTAVCEK SPMPLISQKA LSVIESFGNC VRVGHEELVD ASVATNGSAL AFLSLVANSL KDAGIREGLN ARGSLELVKM SFKGFAKLLE KERPEMIIEQ ICTPKGATIE GLSVLEKKGV RGAFIEACHK SVKKMRL // ID PATA_HELPY Reviewed; 527 AA. AC O25526; DT 13-NOV-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 74. DE RecName: Full=Peptidoglycan O-acetyltransferase; DE Short=PG acetyltransferase; DE EC=2.3.1.-; GN Name=patA; OrderedLocusNames=HP_0855, C694_04380; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP FUNCTION IN PG O-ACETYLATION, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695, and X47; RX PubMed=23221800; DOI=10.1128/mBio.00409-12; RA Wang G., Lo L.F., Forsberg L.S., Maier R.J.; RT "Helicobacter pylori peptidoglycan modifications confer lysozyme RT resistance and contribute to survival in the host."; RL MBio 3:E00409-E00412(2012). CC -!- FUNCTION: Catalyzes the O-acetylation of peptidoglycan (PG), an CC important mechanism that appears to confer lysozyme resistance and CC contributes to pathogen persistence in the host. CC {ECO:0000269|PubMed:23221800}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- DISRUPTION PHENOTYPE: Cells lacking this gene contain a greatly CC reduced amount of acetylated muropeptides in the bacterial PG, and CC are more susceptible to lysozyme killing than wild-type. CC {ECO:0000269|PubMed:23221800}. CC -!- SIMILARITY: Belongs to the membrane-bound acyltransferase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07902.1; -; Genomic_DNA. DR EMBL; CP003904; AFV42066.1; -; Genomic_DNA. DR PIR; G64626; G64626. DR RefSeq; NP_207649.1; NC_000915.1. DR RefSeq; WP_000881300.1; NC_000915.1. DR ProteinModelPortal; O25526; -. DR STRING; 85962.HP0855; -. DR PaxDb; O25526; -. DR PRIDE; O25526; -. DR EnsemblBacteria; AAD07902; AAD07902; HP_0855. DR EnsemblBacteria; AFV42066; AFV42066; C694_04380. DR GeneID; 899384; -. DR KEGG; heo:C694_04380; -. DR KEGG; hpy:HP0855; -. DR PATRIC; 20592999; VBIHelPyl33062_0887. DR eggNOG; ENOG4105CK0; Bacteria. DR eggNOG; COG1696; LUCA. DR OMA; MMPQFAS; -. DR OrthoDB; EOG6QCD9F; -. DR BioCyc; HPY:HP0855-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016746; F:transferase activity, transferring acyl groups; IEA:UniProtKB-KW. DR GO; GO:0042121; P:alginic acid biosynthetic process; IEA:InterPro. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR InterPro; IPR024194; Ac/AlaTfrase_AlgI/DltB. DR InterPro; IPR028362; AlgI. DR InterPro; IPR004299; MBOAT_fam. DR Pfam; PF03062; MBOAT; 1. DR PIRSF; PIRSF500217; AlgI; 1. DR PIRSF; PIRSF016636; AlgI_DltB; 1. PE 1: Evidence at protein level; KW Acyltransferase; Cell membrane; Cell wall biogenesis/degradation; KW Complete proteome; Membrane; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 527 Peptidoglycan O-acetyltransferase. FT /FTId=PRO_0000424441. FT TRANSMEM 11 31 Helical. {ECO:0000255}. FT TRANSMEM 55 75 Helical. {ECO:0000255}. FT TRANSMEM 96 116 Helical. {ECO:0000255}. FT TRANSMEM 131 151 Helical. {ECO:0000255}. FT TRANSMEM 187 207 Helical. {ECO:0000255}. FT TRANSMEM 228 248 Helical. {ECO:0000255}. FT TRANSMEM 280 300 Helical. {ECO:0000255}. FT TRANSMEM 352 372 Helical. {ECO:0000255}. FT TRANSMEM 397 417 Helical. {ECO:0000255}. FT TRANSMEM 463 483 Helical. {ECO:0000255}. FT TRANSMEM 505 525 Helical. {ECO:0000255}. FT ACT_SITE 363 363 {ECO:0000255}. SQ SEQUENCE 527 AA; 61245 MW; F90AE76E8CE9B3BB CRC64; MLASIISILR VFVLLFNTPL FIFAFLPVGF LGYFILQAYA KNPLFPKLWL VLASLFFYAF WNVKYLPLLV GSIVFNYFVA LKIHQTQPNA YKRLWLILGL IANVSLLGFF KYTDFFLTNF NLIWKSHFET LHLILPLAIS FFTLQQIAYL MDTYKQNQIM QPKMRERVSE NAPILLNPPT SFFSLSHFLD YALFVSFFPQ LIAGPIVHHS EMMPQFKDKN NQYLNYRNIA LGLFIFSIGL FKKVVIADNT AHFADFGFDK ATSLSFIQAW MTSLSYSFQL YFDFSGYCDM AIGIGLFFNI KLPINFNSPY KALNIQDFWR RWHITLSRFL KEYLYIPLGG NRVKELIVYR NLILVFLIGG FWHGAGWTFI IWGLLHGIAL SVHRAYSHAT RKFHFTMPKI LAWLITFNFI NLAWVFFRAK NLESALKVLK GMVGLNGVSL CHLSKEASEF LNRVNDNMIM HTIMYASPTF KMCVLMIIIS FCLKNSSHLY QSNQMDWIKT TSACLLLSIG FLFIFASSQS VFLYFNF // ID PAND_HELPY Reviewed; 117 AA. AC P56065; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 112. DE RecName: Full=Aspartate 1-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; DE EC=4.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00446}; DE AltName: Full=Aspartate alpha-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; DE Contains: DE RecName: Full=Aspartate 1-decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00446}; DE Contains: DE RecName: Full=Aspartate 1-decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00446}; DE Flags: Precursor; GN Name=panD {ECO:0000255|HAMAP-Rule:MF_00446}; GN OrderedLocusNames=HP_0034; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) IN COMPLEX WITH SUBSTRATE RP ANALOG, PROTEOLYTIC PROCESSING BY SELF, AND SUBUNIT. RX PubMed=15184017; DOI=10.1016/j.jmb.2004.04.049; RA Lee B.I., Suh S.W.; RT "Crystal structure of the Schiff base intermediate prior to RT decarboxylation in the catalytic cycle of aspartate alpha- RT decarboxylase."; RL J. Mol. Biol. 340:1-7(2004). CC -!- FUNCTION: Catalyzes the pyruvoyl-dependent decarboxylation of CC aspartate to produce beta-alanine. {ECO:0000255|HAMAP- CC Rule:MF_00446}. CC -!- CATALYTIC ACTIVITY: L-aspartate = beta-alanine + CO(2). CC {ECO:0000255|HAMAP-Rule:MF_00446}. CC -!- COFACTOR: CC Name=pyruvate; Xref=ChEBI:CHEBI:15361; CC Note=Binds 1 pyruvoyl group covalently per subunit.; CC -!- PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; CC beta-alanine from L-aspartate: step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_00446}. CC -!- SUBUNIT: Heterooctamer of four alpha and four beta subunits. CC {ECO:0000255|HAMAP-Rule:MF_00446, ECO:0000269|PubMed:15184017}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00446}. CC -!- PTM: Is synthesized initially as an inactive proenzyme, which is CC activated by self-cleavage at a specific serine bond to produce a CC beta-subunit with a hydroxyl group at its C-terminus and an alpha- CC subunit with a pyruvoyl group at its N-terminus. CC -!- SIMILARITY: Belongs to the PanD family. {ECO:0000255|HAMAP- CC Rule:MF_00446}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07103.1; -; Genomic_DNA. DR PIR; B64524; B64524. DR RefSeq; NP_206836.1; NC_000915.1. DR RefSeq; WP_000142250.1; NC_018939.1. DR PDB; 1UHD; X-ray; 2.00 A; A=26-117, B=1-24. DR PDB; 1UHE; X-ray; 1.55 A; A=26-117, B=1-24. DR PDBsum; 1UHD; -. DR PDBsum; 1UHE; -. DR ProteinModelPortal; P56065; -. DR SMR; P56065; 26-117. DR STRING; 85962.HP0034; -. DR PaxDb; P56065; -. DR PRIDE; P56065; -. DR EnsemblBacteria; AAD07103; AAD07103; HP_0034. DR GeneID; 899139; -. DR KEGG; heo:C694_00160; -. DR KEGG; hpy:HP0034; -. DR PATRIC; 20591267; VBIHelPyl33062_0035. DR eggNOG; ENOG4108Z2X; Bacteria. DR eggNOG; COG0853; LUCA. DR KO; K01579; -. DR OMA; LYSKIHR; -. DR OrthoDB; EOG6P5ZMC; -. DR BioCyc; HPY:HP0034-MONOMER; -. DR BRENDA; 4.1.1.11; 2604. DR UniPathway; UPA00028; UER00002. DR EvolutionaryTrace; P56065; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004068; F:aspartate 1-decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006523; P:alanine biosynthetic process; IEA:InterPro. DR GO; GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00446; PanD; 1. DR InterPro; IPR009010; Asp_de-COase-like_dom. DR InterPro; IPR003190; Asp_decarbox. DR PANTHER; PTHR21012; PTHR21012; 1. DR Pfam; PF02261; Asp_decarbox; 1. DR PIRSF; PIRSF006246; Asp_decarbox; 1. DR ProDom; PD009294; Asp_decarbox; 1. DR SUPFAM; SSF50692; SSF50692; 1. DR TIGRFAMs; TIGR00223; panD; 1. PE 1: Evidence at protein level; KW 3D-structure; Autocatalytic cleavage; Complete proteome; Cytoplasm; KW Decarboxylase; Lyase; Pantothenate biosynthesis; Pyruvate; KW Reference proteome; Schiff base; Zymogen. FT CHAIN 1 24 Aspartate 1-decarboxylase beta chain. FT {ECO:0000255|HAMAP-Rule:MF_00446}. FT /FTId=PRO_0000023091. FT CHAIN 25 117 Aspartate 1-decarboxylase alpha chain. FT {ECO:0000255|HAMAP-Rule:MF_00446}. FT /FTId=PRO_0000023092. FT REGION 72 74 Substrate binding. FT ACT_SITE 25 25 Schiff-base intermediate with substrate; FT via pyruvic acid. FT ACT_SITE 58 58 Proton donor. FT BINDING 57 57 Substrate. FT MOD_RES 25 25 Pyruvic acid (Ser). FT STRAND 3 14 {ECO:0000244|PDB:1UHE}. FT STRAND 17 19 {ECO:0000244|PDB:1UHE}. FT STRAND 27 29 {ECO:0000244|PDB:1UHE}. FT HELIX 30 35 {ECO:0000244|PDB:1UHE}. FT STRAND 43 48 {ECO:0000244|PDB:1UHE}. FT TURN 49 51 {ECO:0000244|PDB:1UHE}. FT STRAND 54 58 {ECO:0000244|PDB:1UHE}. FT STRAND 60 62 {ECO:0000244|PDB:1UHE}. FT STRAND 68 71 {ECO:0000244|PDB:1UHE}. FT HELIX 72 77 {ECO:0000244|PDB:1UHE}. FT STRAND 83 92 {ECO:0000244|PDB:1UHE}. FT HELIX 94 99 {ECO:0000244|PDB:1UHE}. FT STRAND 103 107 {ECO:0000244|PDB:1UHE}. FT STRAND 113 117 {ECO:0000244|PDB:1UHE}. SQ SEQUENCE 117 AA; 12939 MW; 430A9A537644E4EF CRC64; MTFEMLYSKI HRATITDANL NYIGSITIDE DLAKLAKLRE GMKVEIVDVN NGERFSTYVI LGKKRGEICV NGAAARKVAI GDVVIILAYA SMNEDEINAH KPSIVLVDEK NEILEKG // ID PARB_HELPY Reviewed; 290 AA. AC O25758; DT 11-JAN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Probable chromosome-partitioning protein ParB; GN Name=parB; OrderedLocusNames=HP_1138; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in chromosome partition. Localize to both poles CC of the predivisional cell following completion of DNA replication. CC Binds to the DNA origin of replication (By similarity). CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ParB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08184.1; -; Genomic_DNA. DR PIR; B64662; B64662. DR RefSeq; NP_207929.1; NC_000915.1. DR RefSeq; WP_001107421.1; NC_018939.1. DR PDB; 4UMK; X-ray; 3.10 A; A/B/C/D=1-240. DR PDBsum; 4UMK; -. DR ProteinModelPortal; O25758; -. DR DIP; DIP-3152N; -. DR IntAct; O25758; 4. DR MINT; MINT-185653; -. DR STRING; 85962.HP1138; -. DR PaxDb; O25758; -. DR PRIDE; O25758; -. DR EnsemblBacteria; AAD08184; AAD08184; HP_1138. DR GeneID; 899675; -. DR KEGG; heo:C694_05870; -. DR KEGG; hpy:HP1138; -. DR PATRIC; 20593621; VBIHelPyl33062_1190. DR eggNOG; ENOG4105FA0; Bacteria. DR eggNOG; COG1475; LUCA. DR KO; K03497; -. DR OMA; QTQTLIA; -. DR OrthoDB; EOG6Z3KMS; -. DR BioCyc; HPY:HP1138-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW. DR InterPro; IPR004437; ParB/RepB/Spo0J. DR InterPro; IPR003115; ParB/Sulfiredoxin_dom. DR Pfam; PF02195; ParBc; 1. DR SMART; SM00470; ParB; 1. DR SUPFAM; SSF110849; SSF110849; 1. DR TIGRFAMs; TIGR00180; parB_part; 1. PE 1: Evidence at protein level; KW 3D-structure; Chromosome partition; Complete proteome; DNA-binding; KW Reference proteome. FT CHAIN 1 290 Probable chromosome-partitioning protein FT ParB. FT /FTId=PRO_0000178682. FT HELIX 37 40 {ECO:0000244|PDB:4UMK}. FT HELIX 56 64 {ECO:0000244|PDB:4UMK}. FT STRAND 68 71 {ECO:0000244|PDB:4UMK}. FT STRAND 74 77 {ECO:0000244|PDB:4UMK}. FT STRAND 82 86 {ECO:0000244|PDB:4UMK}. FT HELIX 88 96 {ECO:0000244|PDB:4UMK}. FT STRAND 107 110 {ECO:0000244|PDB:4UMK}. FT HELIX 111 122 {ECO:0000244|PDB:4UMK}. FT HELIX 130 142 {ECO:0000244|PDB:4UMK}. FT HELIX 148 155 {ECO:0000244|PDB:4UMK}. FT HELIX 159 167 {ECO:0000244|PDB:4UMK}. FT HELIX 168 170 {ECO:0000244|PDB:4UMK}. FT HELIX 173 180 {ECO:0000244|PDB:4UMK}. FT HELIX 186 189 {ECO:0000244|PDB:4UMK}. FT HELIX 190 192 {ECO:0000244|PDB:4UMK}. FT HELIX 197 210 {ECO:0000244|PDB:4UMK}. FT HELIX 214 222 {ECO:0000244|PDB:4UMK}. SQ SEQUENCE 290 AA; 33166 MW; E12FE4F5E20826B8 CRC64; MAKNKVLGRG LADIFPEINE VYEQGLYERA NRVVELGIDE VMPNPYQPRK VFSEDSLEEL AQSIKEHGLL QPVLVVSENG RYHLIAGERR LRASKLAKMP TIKAIVVDIE QEKMREVALI ENIQREDLNP LELARSYKEL LESYQMTQEE LSKIVKKSRA HVANIMRLLT LSSKVQNALL EEKITSGHAK VLVGLDGEKQ ELILNSIIGQ KLSVRQTEDL ARDFKINANF DNKKHGFKQT QTLIAGDELE RLNQSLWDHY KLKAALKGNK IVLRCYENSL LEAFMKKMMS // ID PDXJ_HELPY Reviewed; 262 AA. AC O26102; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Pyridoxine 5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00279}; DE Short=PNP synthase {ECO:0000255|HAMAP-Rule:MF_00279}; DE EC=2.6.99.2 {ECO:0000255|HAMAP-Rule:MF_00279}; GN Name=pdxJ {ECO:0000255|HAMAP-Rule:MF_00279}; GN OrderedLocusNames=HP_1582; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the complicated ring closure reaction between CC the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and CC 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) CC to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00279}. CC -!- CATALYTIC ACTIVITY: 1-deoxy-D-xylulose 5-phosphate + 3-amino-2- CC oxopropyl phosphate = pyridoxine 5'-phosphate + phosphate + 2 CC H(2)O. {ECO:0000255|HAMAP-Rule:MF_00279}. CC -!- PATHWAY: Cofactor biosynthesis; pyridoxine 5'-phosphate CC biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4- CC phosphate: step 5/5. {ECO:0000255|HAMAP-Rule:MF_00279}. CC -!- SUBUNIT: Homooctamer; tetramer of dimers. {ECO:0000255|HAMAP- CC Rule:MF_00279}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00279}. CC -!- SIMILARITY: Belongs to the PNP synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00279}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08620.1; -; Genomic_DNA. DR PIR; F64717; F64717. DR RefSeq; NP_208373.1; NC_000915.1. DR RefSeq; WP_001210849.1; NC_018939.1. DR ProteinModelPortal; O26102; -. DR STRING; 85962.HP1582; -. DR PaxDb; O26102; -. DR PRIDE; O26102; -. DR EnsemblBacteria; AAD08620; AAD08620; HP_1582. DR GeneID; 899709; -. DR KEGG; heo:C694_08195; -. DR KEGG; hpy:HP1582; -. DR PATRIC; 20594591; VBIHelPyl33062_1663. DR eggNOG; ENOG4105CSZ; Bacteria. DR eggNOG; COG0854; LUCA. DR KO; K03474; -. DR OMA; ERHIRYQ; -. DR OrthoDB; EOG6M9F0H; -. DR BioCyc; HPY:HP1582-MONOMER; -. DR UniPathway; UPA00244; UER00313. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0033856; F:pyridoxine 5'-phosphate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0008615; P:pyridoxine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00279; PdxJ; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR004569; PyrdxlP_synth_PdxJ. DR Pfam; PF03740; PdxJ; 1. DR SUPFAM; SSF63892; SSF63892; 1. DR TIGRFAMs; TIGR00559; pdxJ; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Pyridoxine biosynthesis; KW Reference proteome; Transferase. FT CHAIN 1 262 Pyridoxine 5'-phosphate synthase. FT /FTId=PRO_0000190117. FT REGION 8 9 1-deoxy-D-xylulose 5-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT REGION 237 238 3-amino-2-oxopropyl phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT ACT_SITE 43 43 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00279}. FT ACT_SITE 70 70 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00279}. FT ACT_SITE 215 215 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00279}. FT BINDING 6 6 3-amino-2-oxopropyl phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT BINDING 17 17 3-amino-2-oxopropyl phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT BINDING 45 45 1-deoxy-D-xylulose 5-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT BINDING 50 50 1-deoxy-D-xylulose 5-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT BINDING 102 102 1-deoxy-D-xylulose 5-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00279}. FT BINDING 216 216 3-amino-2-oxopropyl phosphate; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00279}. FT SITE 151 151 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_00279}. SQ SEQUENCE 262 AA; 29721 MW; 2D64238225498EC8 CRC64; MRFGLNIDHI VTLREIRKTY EPEILEALFI AKNTHKVDLI TIHLREDRRH IQNEDVLKLL EISPLPINIE CSINAEITDF LCSLKNKPSK VTIVPENRNE VTTEGGLDCS LKGLGEVIRA YHNKGIEVSL FIDPLKDALH FAREHQVKQV EFHTGVYANL HNALYSNANN QIHAISVLKD KSPKELKEEL HNAFLQLRRM SKEAFFMGIT ACAGHGLNYT NVKELLKIPS LRELNIGHSV VSKAVLVGLE KAILEMAQLI KR // ID PDXA_HELPY Reviewed; 307 AA. AC O26103; DT 31-JAN-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 101. DE RecName: Full=4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00536}; DE EC=1.1.1.262 {ECO:0000255|HAMAP-Rule:MF_00536}; DE AltName: Full=4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00536}; GN Name=pdxA {ECO:0000255|HAMAP-Rule:MF_00536}; GN OrderedLocusNames=HP_1583; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the NAD(P)-dependent oxidation of 4- CC (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- CC (phosphohydroxy)butyric acid which spontaneously decarboxylates to CC form 3-amino-2-oxopropyl phosphate (AHAP). {ECO:0000255|HAMAP- CC Rule:MF_00536}. CC -!- CATALYTIC ACTIVITY: 4-phosphonooxy-L-threonine + NAD(+) = 3-amino- CC 2-oxopropyl phosphate + CO(2) + NADH. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00536}; CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00536}; CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00536}; CC Note=Binds 1 divalent metal cation per subunit. Can use ions such CC as Zn(2+), Mg(2+) or Co(2+). {ECO:0000255|HAMAP-Rule:MF_00536}; CC -!- PATHWAY: Cofactor biosynthesis; pyridoxine 5'-phosphate CC biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4- CC phosphate: step 4/5. {ECO:0000255|HAMAP-Rule:MF_00536}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00536}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00536}. CC -!- MISCELLANEOUS: The active site is located at the dimer interface. CC {ECO:0000255|HAMAP-Rule:MF_00536}. CC -!- SIMILARITY: Belongs to the PdxA family. {ECO:0000255|HAMAP- CC Rule:MF_00536}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08621.1; -; Genomic_DNA. DR PIR; G64717; G64717. DR RefSeq; NP_208374.1; NC_000915.1. DR RefSeq; WP_001075036.1; NC_018939.1. DR ProteinModelPortal; O26103; -. DR DIP; DIP-3611N; -. DR IntAct; O26103; 1. DR MINT; MINT-176457; -. DR STRING; 85962.HP1583; -. DR PaxDb; O26103; -. DR PRIDE; O26103; -. DR EnsemblBacteria; AAD08621; AAD08621; HP_1583. DR GeneID; 899708; -. DR KEGG; heo:C694_08200; -. DR KEGG; hpy:HP1583; -. DR PATRIC; 20594593; VBIHelPyl33062_1664. DR eggNOG; ENOG4105CEZ; Bacteria. DR eggNOG; COG1995; LUCA. DR KO; K00097; -. DR OMA; PINKLAW; -. DR OrthoDB; EOG6GN6ZC; -. DR BioCyc; HPY:HP1583-MONOMER; -. DR UniPathway; UPA00244; UER00312. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0050570; F:4-hydroxythreonine-4-phosphate dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050897; F:cobalt ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008615; P:pyridoxine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.718.10; -; 1. DR HAMAP; MF_00536; PdxA; 1. DR InterPro; IPR024084; IsoPropMal-DH-like_dom. DR InterPro; IPR005255; PdxA. DR Pfam; PF04166; PdxA; 1. DR TIGRFAMs; TIGR00557; pdxA; 1. PE 3: Inferred from homology; KW Cobalt; Complete proteome; Cytoplasm; Magnesium; Metal-binding; NAD; KW NADP; Oxidoreductase; Pyridoxine biosynthesis; Reference proteome; KW Zinc. FT CHAIN 1 307 4-hydroxythreonine-4-phosphate FT dehydrogenase. FT /FTId=PRO_0000188809. FT METAL 156 156 Divalent metal cation; shared with FT dimeric partner. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT METAL 195 195 Divalent metal cation; shared with FT dimeric partner. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT METAL 251 251 Divalent metal cation; shared with FT dimeric partner. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT BINDING 126 126 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT BINDING 127 127 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT BINDING 259 259 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT BINDING 268 268 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00536}. FT BINDING 277 277 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00536}. SQ SEQUENCE 307 AA; 33579 MW; B122B0A0BB00D70E CRC64; MAKKKIAISC GDIQGVGLEL ILKSHKEVSA LCEPLYLTDG ELLERANQLL HNAYETKVLN ALAIDAPLPL LNSSTIGKVS AQSGAYSFES FKKACELADS KEVDGICTLP INKLAWQQAQ IPFVGHTDFL KQRYKDHQII MMLGCSKLFV GLFSDHVPLG AVSQLIQVGA LVKFLLAFQK STQAKIVQVC GFNPHAGEEG LFGEEDERIL KAIQKSNQTL GFECFLGPLP ADSAFAPNKR KITPFYVSMS HDVGLAPLKA LYFDESINVS LNAPILRTST DHGTAFDIAY QNKANNKSYL NAIKYLA // ID PGK_HELPY Reviewed; 402 AA. AC P56154; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Phosphoglycerate kinase; DE EC=2.7.2.3; GN Name=pgk; OrderedLocusNames=HP_1345; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + 3-phospho-D-glycerate = ADP + 3-phospho- CC D-glyceroyl phosphate. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 2/5. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the phosphoglycerate kinase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08386.1; -; Genomic_DNA. DR PIR; A64688; A64688. DR RefSeq; NP_208137.1; NC_000915.1. DR RefSeq; WP_000880064.1; NC_018939.1. DR ProteinModelPortal; P56154; -. DR DIP; DIP-3617N; -. DR IntAct; P56154; 3. DR MINT; MINT-174705; -. DR STRING; 85962.HP1345; -. DR PaxDb; P56154; -. DR PRIDE; P56154; -. DR EnsemblBacteria; AAD08386; AAD08386; HP_1345. DR GeneID; 900358; -. DR KEGG; heo:C694_06940; -. DR KEGG; hpy:HP1345; -. DR PATRIC; 20594075; VBIHelPyl33062_1408. DR eggNOG; ENOG4105BZA; Bacteria. DR eggNOG; COG0126; LUCA. DR KO; K00927; -. DR OMA; EIPDDWM; -. DR OrthoDB; EOG64N9Z0; -. DR BioCyc; HPY:HP1345-MONOMER; -. DR UniPathway; UPA00109; UER00185. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004618; F:phosphoglycerate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1260; -; 1. DR Gene3D; 3.40.50.1270; -; 1. DR HAMAP; MF_00145; Phosphoglyc_kinase; 1. DR InterPro; IPR001576; Phosphoglycerate_kinase. DR InterPro; IPR015901; Phosphoglycerate_kinase_C. DR InterPro; IPR015911; Phosphoglycerate_kinase_CS. DR InterPro; IPR015824; Phosphoglycerate_kinase_N. DR PANTHER; PTHR11406; PTHR11406; 1. DR Pfam; PF00162; PGK; 1. DR PIRSF; PIRSF000724; Pgk; 1. DR PRINTS; PR00477; PHGLYCKINASE. DR SUPFAM; SSF53748; SSF53748; 1. DR PROSITE; PS00111; PGLYCERATE_KINASE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Glycolysis; Kinase; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 402 Phosphoglycerate kinase. FT /FTId=PRO_0000145950. FT NP_BIND 357 360 ATP. {ECO:0000250}. FT REGION 29 31 Substrate binding. {ECO:0000250}. FT REGION 69 72 Substrate binding. {ECO:0000250}. FT BINDING 45 45 Substrate. {ECO:0000250}. FT BINDING 125 125 Substrate. {ECO:0000250}. FT BINDING 158 158 Substrate. {ECO:0000250}. FT BINDING 209 209 ATP. {ECO:0000250}. FT BINDING 331 331 ATP. {ECO:0000250}. SQ SEQUENCE 402 AA; 44772 MW; D74B63DBAF4465D7 CRC64; MLAKMSFMQN VKNIQEVEVS HKRVLIRVDF NVPLDENLNI TDDTRIRESL PTIQYCIDNK AKDIILVSHL GRPKGVEEKL SLKPFLKRLE RLLNHEVVFS QNIVQLKQAL NENAPTRIFL LENIRFLRGE EENDENLAKD LASLCDVFVN DAFGTSHRKH ASTYGTAKFA PIKVSGFLLK KEIDSFYQAF NHPLRPLLLI VGGAKVSSKL TLLKNILDLI DKLIIAGAMS NTFLKALGYD VQDSSVEDAL INDALELLQS AKEKKVKVYL PIDAVTTDDI LNPKHIKISP VQDIEPKHKI ADIGPASLKL FSEVIESAPT ILWNGPLGVH EKQEFARGTT FLAHKIADTY AFSLIGGGDT IDAINRAGEK DNMSFISTGG GASLELLEGK ILPCFEVLDK RH // ID PGBA_HELPY Reviewed; 452 AA. AC O25249; Q70SU1; DT 04-JAN-2005, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 74. DE RecName: Full=Plasminogen-binding protein PgbA; GN Name=pgbA; OrderedLocusNames=HP_0508; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PLASMINOGEN-BINDING ACTIVITY. RC STRAIN=ATCC 700392 / 26695, and DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=14769936; DOI=10.1073/pnas.0307329101; RA Joensson K., Guo B.P., Monstein H.J., Mekalanos J.J., Kronvall G.; RT "Molecular cloning and characterization of two Helicobacter pylori RT genes coding for plasminogen-binding proteins."; RL Proc. Natl. Acad. Sci. U.S.A. 101:1852-1857(2004). CC -!- FUNCTION: Binds plasminogen, specifically, and in a concentration CC and lysine-dependent manner. Plasminogen is the precursor of CC plasmin, a serine protease that cleaves fibrin, fibronectin, CC laminin and vitronectin. Acquisition of plasminogen/plasmin could CC enable H.pylori to degrade host components. CC -!- SUBCELLULAR LOCATION: Cell surface {ECO:0000305}. Note=The CC plasminogen-binding region is localized on the surface the CC bacterium. {ECO:0000305}. CC -!- MISCELLANEOUS: Plasminogen bound to PgbA is capable of being CC converted to functionally active plasmin. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07578.1; -; Genomic_DNA. DR EMBL; AJ550456; CAD79440.1; -; Genomic_DNA. DR PIR; D64583; D64583. DR RefSeq; NP_207305.1; NC_000915.1. DR RefSeq; WP_000945103.1; NC_018939.1. DR ProteinModelPortal; O25249; -. DR STRING; 85962.HP0508; -. DR PaxDb; O25249; -. DR PRIDE; O25249; -. DR EnsemblBacteria; AAD07578; AAD07578; HP_0508. DR GeneID; 900052; -. DR KEGG; heo:C694_02610; -. DR KEGG; hpy:HP0508; -. DR PATRIC; 20592291; VBIHelPyl33062_0534. DR eggNOG; ENOG4105MRU; Bacteria. DR eggNOG; ENOG4111V4A; LUCA. DR OMA; PFFSRVE; -. DR OrthoDB; EOG6VB6S6; -. DR BioCyc; HPY:HP0508-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009986; C:cell surface; IEA:UniProtKB-SubCell. DR InterPro; IPR032737; PGBA_C. DR InterPro; IPR029276; PgbA_N. DR Pfam; PF15437; PGBA_C; 2. DR Pfam; PF15436; PGBA_N; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome. FT CHAIN 1 452 Plasminogen-binding protein PgbA. FT /FTId=PRO_0000058351. FT COMPBIAS 238 452 Lys-rich. FT VARIANT 91 91 R -> S (in strain: CCUG 17874). FT VARIANT 138 138 Missing (in strain: CCUG 17874). FT VARIANT 199 199 T -> I (in strain: CCUG 17874). FT VARIANT 252 252 E -> G (in strain: CCUG 17874). FT VARIANT 279 279 Q -> E (in strain: CCUG 17874). FT VARIANT 349 349 D -> N (in strain: CCUG 17874). FT VARIANT 350 352 Missing (in strain: CCUG 17874). FT VARIANT 354 354 R -> K (in strain: CCUG 17874). FT VARIANT 356 357 KP -> NA (in strain: CCUG 17874). FT VARIANT 373 374 SD -> DN (in strain: CCUG 17874). FT VARIANT 394 394 Q -> S (in strain: CCUG 17874). FT VARIANT 398 398 N -> K (in strain: CCUG 17874). FT VARIANT 449 450 AG -> MN (in strain: CCUG 17874). SQ SEQUENCE 452 AA; 52656 MW; E2F88D85EC9EDB92 CRC64; MLRLLIGLLL MSFISLQSAS WQEPLRVSIE FVDLPKKIIR FPAHDLQVGE FGFVVTKLSD YEIVNSEVVI IAVENGVATA KFRAFESMKQ RHLPTPRMVA RKGDLVYFRQ FNNQAFLIAP NDELYEQIRA TNTDINFISS DLLVTFLNGF DPKIANLRKA CNVYSVGVIY IVTTNTLNIL SCESFEILEK RELDTSGVTK TSTPFFSRVE GIDAGTLGKL FSGSQSKNYF AYYDALVKKE KRKEVRIKKR EEKIDSREIK REIKQEAIKE PKKANQGTQN APTLEEKNYQ KAERKLDAKE ERRYLRDERK KAKATKKAME FEEREKEHDE RDEQETEGRR KALEMDKGDK KEERVKPKEN EREIKQEAIK EPSDGNNATQ QGEKQNAPKE NNAQKEENKP NSKEEKRRLK EEKKKAKAEQ RAREFEQRAR EHQERDEKEL EERRKALEAG KK // ID PGBB_HELPY Reviewed; 542 AA. AC O25534; DT 04-JAN-2005, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 78. DE RecName: Full=Plasminogen-binding protein PgbB; GN Name=pgbB; OrderedLocusNames=HP_0863; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP PLASMINOGEN-BINDING ACTIVITY. RC STRAIN=ATCC 700392 / 26695, and DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=14769936; DOI=10.1073/pnas.0307329101; RA Joensson K., Guo B.P., Monstein H.J., Mekalanos J.J., Kronvall G.; RT "Molecular cloning and characterization of two Helicobacter pylori RT genes coding for plasminogen-binding proteins."; RL Proc. Natl. Acad. Sci. U.S.A. 101:1852-1857(2004). CC -!- FUNCTION: Binds plasminogen, specifically, and in a concentration CC and lysine-dependent manner. Plasminogen is the precursor of CC plasmin, a serine protease that cleaves fibrin, fibronectin, CC laminin and vitronectin. Acquisition of plasminogen/plasmin could CC enable H.pylori to degrade host components. CC -!- SUBCELLULAR LOCATION: Cell surface {ECO:0000305}. Note=The CC plasminogen-binding region is localized on the surface the CC bacterium. {ECO:0000305}. CC -!- MISCELLANEOUS: Plasminogen bound to PgbB is capable of being CC converted to functionally active plasmin. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07917.1; -; Genomic_DNA. DR PIR; G64627; G64627. DR RefSeq; NP_207657.1; NC_000915.1. DR RefSeq; WP_001039566.1; NC_018939.1. DR ProteinModelPortal; O25534; -. DR STRING; 85962.HP0863; -. DR PaxDb; O25534; -. DR PRIDE; O25534; -. DR EnsemblBacteria; AAD07917; AAD07917; HP_0863. DR GeneID; 899392; -. DR KEGG; heo:C694_04420; -. DR KEGG; hpy:HP0863; -. DR PATRIC; 20593015; VBIHelPyl33062_0895. DR eggNOG; ENOG4108TX7; Bacteria. DR eggNOG; ENOG4111FJR; LUCA. DR OMA; VFPMLDG; -. DR OrthoDB; EOG6J48HH; -. DR BioCyc; HPY:HP0863-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009986; C:cell surface; IEA:UniProtKB-SubCell. DR Gene3D; 2.130.10.10; -; 1. DR InterPro; IPR032737; PGBA_C. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR InterPro; IPR017986; WD40_repeat_dom. DR Pfam; PF15437; PGBA_C; 1. DR SUPFAM; SSF50978; SSF50978; 1. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome. FT CHAIN 1 542 Plasminogen-binding protein PgbB. FT /FTId=PRO_0000058353. FT COMPBIAS 303 542 Lys-rich. SQ SEQUENCE 542 AA; 61900 MW; E77A4EF68A04ECED CRC64; MNKPFLILLI ALIVFSGCNM RKYFKPAKHQ IKGEAYFPNH LQESIVSSNR YGAILKNGAV IGDKGLTQLR IGKNFNYESS FLNESQGFFI LAQDCLNKID KKTNKSKVAK TEETELKLKG VEAEVQDKVC HQVELISNNP NASQQSIVIP LETFALSASV KGNLLAVVLA DNSANLYDIT SQKLLFSEKG SPSTTINSLM AMPIFMDTVV VFPMLDGRLL VVDYVHGNPT PIRNIVISSD KFFNNITYLI VDGNNMIAST GKRILSVVSG QEFNYDGDIV DLLYDKGTLY VLTLDGQILQ MDKSLRELNS VKLPSSLNTI VLNHNKLYSL EKRGYVIEVD LNDFDSYNVY KTPTIGSFKF FSSNRLDKGV FYDKNRVYYD RYYLDYNDFK PKLYPVVEKS ASKKSQKGEK GNAPIYLQER HKAKENKQPL EENKVKPRNS GFEEEEVKTR RPEPIRDQNN ATQQGETKNN ESKNAPVLKE NAAKKEVPKP NSKEEKRRLK EEKKKAKAEQ RAREFEQRAR EHQERDEKEL EERRKALEMN KK // ID PIMT_HELPY Reviewed; 209 AA. AC P56133; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 97. DE RecName: Full=Protein-L-isoaspartate O-methyltransferase; DE EC=2.1.1.77; DE AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; DE AltName: Full=Protein L-isoaspartyl methyltransferase; DE AltName: Full=Protein-beta-aspartate methyltransferase; DE Short=PIMT; GN Name=pcm; OrderedLocusNames=HP_0363; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the methyl esterification of L-isoaspartyl CC residues in peptides and proteins that result from spontaneous CC decomposition of normal L-aspartyl and L-asparaginyl residues. It CC plays a role in the repair and/or degradation of damaged proteins CC (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + protein L- CC isoaspartate = S-adenosyl-L-homocysteine + protein L-isoaspartate CC alpha-methyl ester. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. L- CC isoaspartyl/D-aspartyl protein methyltransferase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07431.1; -; Genomic_DNA. DR PIR; C64565; C64565. DR RefSeq; NP_207161.1; NC_000915.1. DR RefSeq; WP_001084597.1; NC_018939.1. DR ProteinModelPortal; P56133; -. DR IntAct; P56133; 1. DR STRING; 85962.HP0363; -. DR PaxDb; P56133; -. DR PRIDE; P56133; -. DR EnsemblBacteria; AAD07431; AAD07431; HP_0363. DR GeneID; 900271; -. DR KEGG; heo:C694_01840; -. DR KEGG; hpy:HP0363; -. DR PATRIC; 20591961; VBIHelPyl33062_0375. DR eggNOG; ENOG4105E26; Bacteria. DR eggNOG; COG2518; LUCA. DR KO; K00573; -. DR OMA; IDHVDSV; -. DR OrthoDB; EOG644ZP2; -. DR BioCyc; HPY:HP0363-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004719; F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030091; P:protein repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00090; PIMT; 1. DR InterPro; IPR000682; PCMT. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR11579; PTHR11579; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00080; pimt; 1. DR PROSITE; PS01279; PCMT; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW S-adenosyl-L-methionine; Transferase. FT CHAIN 1 209 Protein-L-isoaspartate O- FT methyltransferase. FT /FTId=PRO_0000111892. FT ACT_SITE 59 59 {ECO:0000250}. SQ SEQUENCE 209 AA; 23868 MW; 48F060C1C00B50D8 CRC64; MNSIKNHLMC EEINKRFNLH PKVREAMESI EREVFVPAPF KHFAYTLNAL SMQAQQYISS PLTVAKMTQY LEIDHVDSVL EIGCGSGYQA AVLSQIFRRV FSIERIESLY IEARLRLKTL GLDNVHVKFA DGNKGWEQYA PYDRILFSAC AKNIPQALID QLEEGGILVA PIQENNEQVI KRFVKQNNAL RVQKVLEKCL FVPVVDGVQ // ID PLSC_HELPY Reviewed; 240 AA. AC O25903; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=1-acyl-sn-glycerol-3-phosphate acyltransferase; DE Short=1-AGP acyltransferase; DE Short=1-AGPAT; DE EC=2.3.1.51; DE AltName: Full=Lysophosphatidic acid acyltransferase; DE Short=LPAAT; GN Name=plsC; OrderedLocusNames=HP_1348; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic CC acid by incorporating acyl moiety at the 2 position. CC -!- CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CC CoA + 1,2-diacyl-sn-glycerol 3-phosphate. CC -!- PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CC CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; CC Peripheral membrane protein {ECO:0000305}. CC -!- DOMAIN: The HXXXXD motif is essential for acyltransferase activity CC and may constitute the binding site for the phosphate moiety of CC the glycerol-3-phosphate. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the 1-acyl-sn-glycerol-3-phosphate CC acyltransferase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08393.1; -; Genomic_DNA. DR PIR; D64688; D64688. DR RefSeq; NP_208140.1; NC_000915.1. DR RefSeq; WP_000841286.1; NC_018939.1. DR ProteinModelPortal; O25903; -. DR STRING; 85962.HP1348; -. DR PaxDb; O25903; -. DR PRIDE; O25903; -. DR EnsemblBacteria; AAD08393; AAD08393; HP_1348. DR GeneID; 900355; -. DR KEGG; heo:C694_06955; -. DR KEGG; hpy:HP1348; -. DR PATRIC; 20594081; VBIHelPyl33062_1411. DR eggNOG; ENOG4105E9Q; Bacteria. DR eggNOG; COG0204; LUCA. DR KO; K00655; -. DR OMA; RRACSCF; -. DR OrthoDB; EOG6ZWJDH; -. DR BioCyc; HPY:HP1348-MONOMER; -. DR UniPathway; UPA00557; UER00613. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0003841; F:1-acylglycerol-3-phosphate O-acyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0016024; P:CDP-diacylglycerol biosynthetic process; IEA:UniProtKB-UniPathway. DR InterPro; IPR004552; AGP_acyltrans. DR InterPro; IPR002123; Plipid/glycerol_acylTrfase. DR Pfam; PF01553; Acyltransferase; 1. DR SMART; SM00563; PlsC; 1. DR TIGRFAMs; TIGR00530; AGP_acyltrn; 1. PE 3: Inferred from homology; KW Acyltransferase; Cell inner membrane; Cell membrane; KW Complete proteome; Lipid biosynthesis; Lipid metabolism; Membrane; KW Phospholipid biosynthesis; Phospholipid metabolism; KW Reference proteome; Transferase. FT CHAIN 1 240 1-acyl-sn-glycerol-3-phosphate FT acyltransferase. FT /FTId=PRO_0000208170. FT MOTIF 74 79 HXXXXD motif. SQ SEQUENCE 240 AA; 27745 MW; 22BD5D0EB190BBDD CRC64; MKSNKKSNRL RAIYRALVIA IGLAVIIVFN YFNRKNNNAR SSRRACSCFF SLTGVNLEKI GTFDTDAKLI VLNHQSLLDI IYLEAYHPRN ICWIAKKELG EIPFYGHALT DTGMILIDRE DKKGIVSLLK ACKEKLDQNR PLVIFPEGTR GKGGEKFLPF KQGAKIIAEK FQLKIQPMVL INSIKIFNSK PLEAYKARTR LVMLESYTPD FNSPTWYEEL QERMQKEYLK HYHELNPSEQ // ID PGDAE_HELPY Reviewed; 293 AA. AC O25080; DT 13-NOV-2013, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=Peptidoglycan deacetylase; DE Short=PG deacetylase; DE EC=3.5.1.-; DE AltName: Full=Acetylxylan esterase; DE EC=3.1.1.72; GN Name=pgdA; OrderedLocusNames=HP_0310, C694_01565; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP PROTEIN SEQUENCE OF 2-9, FUNCTION AS A PG DEACETYLASE, INDUCTION, AND RP DISRUPTION PHENOTYPE. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=19147492; DOI=10.1074/jbc.M808071200; RA Wang G., Olczak A., Forsberg L.S., Maier R.J.; RT "Oxidative stress-induced peptidoglycan deacetylase in Helicobacter RT pylori."; RL J. Biol. Chem. 284:6790-6800(2009). RN [4] RP FUNCTION, GENE NAME, INDUCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=B128, and X47; RX PubMed=20805339; DOI=10.1128/IAI.00307-10; RA Wang G., Maier S.E., Lo L.F., Maier G., Dosi S., Maier R.J.; RT "Peptidoglycan deacetylation in Helicobacter pylori contributes to RT bacterial survival by mitigating host immune responses."; RL Infect. Immun. 78:4660-4666(2010). RN [5] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695, and X47; RX PubMed=23221800; DOI=10.1128/mBio.00409-12; RA Wang G., Lo L.F., Forsberg L.S., Maier R.J.; RT "Helicobacter pylori peptidoglycan modifications confer lysozyme RT resistance and contribute to survival in the host."; RL MBio 3:E00409-E00412(2012). RN [6] RP IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION AS AN ACETYLXYLAN RP ESTERASE, CATALYTIC ACTIVITY, SUBSTRATE SPECIFICITY, AND RP BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23825549; DOI=10.1371/journal.pone.0066605; RA Choi H.P., Juarez S., Ciordia S., Fernandez M., Bargiela R., RA Albar J.P., Mazumdar V., Anton B.P., Kasif S., Ferrer M., Steffen M.; RT "Biochemical characterization of hypothetical proteins from RT Helicobacter pylori."; RL PLoS ONE 8:E66605-E66605(2013). CC -!- FUNCTION: Catalyzes the N-deacetylation of peptidoglycan (PG), an CC important mechanism that appears to confer lysozyme resistance and CC to mitigate host immune detection; this likely contributes to CC pathogen persistence in the host. The exact nature of the residue CC in PG that is deacetylated has not been determined. Is also able CC to catalyze the deacetylation of acetylated xylan, and, to a CC lesser extent, that of chitin and chitosan. Therefore, this enzyme CC might play a role during infection, considering that xylan- CC containing carbohydrate structures are among those commonly CC consumed by humans. {ECO:0000269|PubMed:19147492, CC ECO:0000269|PubMed:20805339, ECO:0000269|PubMed:23221800, CC ECO:0000269|PubMed:23825549}. CC -!- CATALYTIC ACTIVITY: Deacetylation of xylans and xylo- CC oligosaccharides. {ECO:0000269|PubMed:23825549}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.85 mM for chitin {ECO:0000269|PubMed:23825549}; CC KM=0.85 mM for chitosan {ECO:0000269|PubMed:23825549}; CC KM=0.42 mM for acetylated xylan {ECO:0000269|PubMed:23825549}; CC KM=0.18 mM for pNP-acetate {ECO:0000269|PubMed:23825549}; CC Note=kcat is 775 min(-1), 968 min(-1), 2549 min(-1) and 1029 CC min(-1) with chitin, chitosan, acetylated xylan, and pNP-acetate CC as substrate, respectively.; CC pH dependence: CC Optimum pH is 6.0 with acetylated xylan as substrate. Is active CC at acidic pH ranging from 5.0 to 6.0. CC {ECO:0000269|PubMed:23825549}; CC Temperature dependence: CC Optimum temperature is 50 degrees Celsius with acetylated xylan CC as substrate. Retains about 80% of the activity at 30-55 degrees CC Celsius. {ECO:0000269|PubMed:23825549}; CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- INDUCTION: Its expression is markedly up-regulated upon cell CC exposure to oxidative stress. Is also significantly induced (3.5- CC fold) when H.pylori cells are in contact with macrophages. CC {ECO:0000269|PubMed:19147492, ECO:0000269|PubMed:20805339}. CC -!- DISRUPTION PHENOTYPE: Cells lacking this gene are considerably CC less resistant to lysozyme than wild-type, and show an absence or CC significantly reduced amount of N-deacetylated muropeptides in the CC bacterial PG. Mutant strains also have attenuated ability to CC colonize mouse stomachs, and induce a stronger immune response in CC the host. Disruption of this gene does not affect oxidative stress CC resistance characteristics, indicating that the major CC physiological role of the enzyme is not in combating oxidative CC stress. {ECO:0000269|PubMed:19147492, ECO:0000269|PubMed:20805339, CC ECO:0000269|PubMed:23221800}. CC -!- SIMILARITY: Belongs to the polysaccharide deacetylase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 NodB homology domain. {ECO:0000255|PROSITE- CC ProRule:PRU01014}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07376.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41534.1; -; Genomic_DNA. DR PIR; F64558; F64558. DR RefSeq; NP_207108.1; NC_000915.1. DR RefSeq; WP_001040419.1; NC_018939.1. DR ProteinModelPortal; O25080; -. DR STRING; 85962.HP0310; -. DR PaxDb; O25080; -. DR PRIDE; O25080; -. DR DNASU; 899203; -. DR EnsemblBacteria; AAD07376; AAD07376; HP_0310. DR EnsemblBacteria; AFV41534; AFV41534; C694_01565. DR GeneID; 899203; -. DR KEGG; heo:C694_01565; -. DR KEGG; hpy:HP0310; -. DR PATRIC; 20591847; VBIHelPyl33062_0321. DR eggNOG; ENOG410819M; Bacteria. DR eggNOG; ENOG4111TDG; LUCA. DR OMA; QVLLMHE; -. DR OrthoDB; EOG6P8TKM; -. DR BioCyc; HPY:HP0310-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046555; F:acetylxylan esterase activity; IEA:UniProtKB-EC. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW. DR GO; GO:0045493; P:xylan catabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.370; -; 1. DR InterPro; IPR011330; Glyco_hydro/deAcase_b/a-brl. DR InterPro; IPR002509; NODB_dom. DR Pfam; PF01522; Polysacc_deac_1; 1. DR SUPFAM; SSF88713; SSF88713; 1. DR PROSITE; PS51677; NODB; 1. PE 1: Evidence at protein level; KW Carbohydrate metabolism; Cell wall biogenesis/degradation; KW Complete proteome; Direct protein sequencing; Hydrolase; KW Metal-binding; Polysaccharide degradation; Reference proteome; KW Stress response; Xylan degradation; Zinc. FT INIT_MET 1 1 Removed. {ECO:0000269|PubMed:19147492}. FT CHAIN 2 293 Peptidoglycan deacetylase. FT /FTId=PRO_0000424438. FT DOMAIN 29 276 NodB homology. {ECO:0000255|PROSITE- FT ProRule:PRU01014}. FT METAL 14 14 Zinc. {ECO:0000250}. FT METAL 86 86 Zinc; via tele nitrogen. {ECO:0000250}. FT METAL 90 90 Zinc; via tele nitrogen. {ECO:0000250}. SQ SEQUENCE 293 AA; 33677 MW; 42ADF39EE681532D CRC64; MAKEILVAYG VDIDAVAGWL GSYGGEDSPD DISRGLFAGE VGIPRLLKLF KKYHLPATWF SPGHSIETFS EQMKMIVDAG HEVGAHGYSH ENPIAMTAKQ EEDVLLKSVE LIKDLTGKAP TGYVAPWWEF SNITNELLLK HGFKYDHSLM HNDFTPYYVR VGDSWSKIDY SLEAKDWMKP LIRGVETDLV EIPANWYLDD LPPMMFIKKS PNSFGFVSPH DIGQMWIDQF DWVYREMDYA VFSMTIHPDV SARPQVLLMH EKIIEHINKH EGVRWVTFNE IADDFLKRNP RKK // ID PNP_HELPY Reviewed; 688 AA. AC O25812; DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; DE EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595}; DE AltName: Full=Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; DE Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595}; GN Name=pnp {ECO:0000255|HAMAP-Rule:MF_01595}; OrderedLocusNames=HP_1213; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in mRNA degradation. Catalyzes the CC phosphorolysis of single-stranded polyribonucleotides processively CC in the 3'- to 5'-direction. {ECO:0000255|HAMAP-Rule:MF_01595}. CC -!- CATALYTIC ACTIVITY: RNA(n+1) + phosphate = RNA(n) + a nucleoside CC diphosphate. {ECO:0000255|HAMAP-Rule:MF_01595}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01595}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01595}. CC -!- SIMILARITY: Belongs to the polyribonucleotide CC nucleotidyltransferase family. {ECO:0000255|HAMAP-Rule:MF_01595}. CC -!- SIMILARITY: Contains 1 KH domain. {ECO:0000255|HAMAP- CC Rule:MF_01595}. CC -!- SIMILARITY: Contains 1 S1 motif domain. {ECO:0000255|HAMAP- CC Rule:MF_01595}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08258.1; -; Genomic_DNA. DR PIR; E64671; E64671. DR RefSeq; NP_208005.1; NC_000915.1. DR RefSeq; WP_000345816.1; NC_018939.1. DR ProteinModelPortal; O25812; -. DR DIP; DIP-3551N; -. DR IntAct; O25812; 3. DR MINT; MINT-181907; -. DR STRING; 85962.HP1213; -. DR PaxDb; O25812; -. DR PRIDE; O25812; -. DR EnsemblBacteria; AAD08258; AAD08258; HP_1213. DR GeneID; 899970; -. DR KEGG; heo:C694_06275; -. DR KEGG; hpy:HP1213; -. DR PATRIC; 20593799; VBIHelPyl33062_1270. DR eggNOG; ENOG4105C62; Bacteria. DR eggNOG; COG1185; LUCA. DR KO; K00962; -. DR OMA; RFMFHYN; -. DR OrthoDB; EOG6WT8CC; -. DR BioCyc; HPY:HP1213-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR Gene3D; 1.10.10.400; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.30.1370.10; -; 1. DR Gene3D; 3.30.230.70; -; 2. DR HAMAP; MF_01595; PNPase; 1. DR InterPro; IPR001247; ExoRNase_PH_dom1. DR InterPro; IPR015847; ExoRNase_PH_dom2. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR012162; PNPase. DR InterPro; IPR027408; PNPase/RNase_PH_dom. DR InterPro; IPR015848; PNPase_PH_RNA-bd_bac/org-type. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR PANTHER; PTHR11252; PTHR11252; 1. DR Pfam; PF00013; KH_1; 1. DR Pfam; PF01138; RNase_PH; 2. DR Pfam; PF03725; RNase_PH_C; 2. DR Pfam; PF00575; S1; 1. DR PIRSF; PIRSF005499; PNPase; 1. DR SMART; SM00322; KH; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF46915; SSF46915; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF54211; SSF54211; 2. DR SUPFAM; SSF54791; SSF54791; 1. DR SUPFAM; SSF55666; SSF55666; 2. DR TIGRFAMs; TIGR03591; polynuc_phos; 1. DR PROSITE; PS50084; KH_TYPE_1; 1. DR PROSITE; PS50126; S1; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Magnesium; Metal-binding; KW Nucleotidyltransferase; Reference proteome; RNA-binding; Transferase. FT CHAIN 1 688 Polyribonucleotide FT nucleotidyltransferase. FT /FTId=PRO_0000329678. FT DOMAIN 550 609 KH. {ECO:0000255|HAMAP-Rule:MF_01595}. FT DOMAIN 626 688 S1 motif. {ECO:0000255|HAMAP- FT Rule:MF_01595}. FT METAL 484 484 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01595}. FT METAL 490 490 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01595}. SQ SEQUENCE 688 AA; 76895 MW; BECF5C91ECC1E489 CRC64; MDFITINSSN KTEEFALKQV AKQATSSLLY RLGKTIILAS VCVEREPVSE DFLPLVVQFL EKSYAAGKIP GGFVKREGRA QDFEILTSRL IDRTLRPLFP KDYRYPTQIT LMVLSHDIEN DLQVSALNAA SAALFLAHIA PIKSVSACRI ARMDNEFIIN PSASLLNQSS LDLFVSGTKE SLNMIEMRSL GQKLNALEEP LMLEALELAQ KSLEETCTLY EEIFTPHQNE LFFKESQGIV FNERLLDLLK NQYFDEIIKG IESSALSERE NVFNEIARKI SEAHSEFSLE EIELSLEKVK KTEIRRMIIK DKIRPDKRAL EEVRPILIES DLLPMAHSSI LFTRGQTQSL VVGVLGTDND AQTHESLEHK APIKERFMFH YNFPPFCVGE ASSIGAASRR ELGHGNLAKR ALETSIKNKE QVIRLVSEIL ESNGSSSMAS VCAGSLALYA SGVEIYDLVA GVAMGMVSEG QDHAILSDIS GLEDAEGDMD FKIAGNLEGI TAMQMDTKMS GIKLEILYQA LLQAKEARKH ILKIMHEAKE KIVINFSHLP TTEIFNVAPD KIVEIIGQGG RVIKEIVEKF EVKIDLNKPS GEVKIMGNKE RVLKTKEFIL NYLHSLDQEL EQYAIDEVLE AQVKRIVDFG AFLSLPKGGE GLLRKQNMDK CQVVLKEGDS IRCRVISFNK GKIALDLA // ID PPK_HELPY Reviewed; 675 AA. AC O25654; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Polyphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00347}; DE EC=2.7.4.1 {ECO:0000255|HAMAP-Rule:MF_00347}; DE AltName: Full=ATP-polyphosphate phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00347}; DE AltName: Full=Polyphosphoric acid kinase {ECO:0000255|HAMAP-Rule:MF_00347}; GN Name=ppk {ECO:0000255|HAMAP-Rule:MF_00347}; OrderedLocusNames=HP_1010; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible transfer of the terminal CC phosphate of ATP to form a long-chain polyphosphate (polyP). CC {ECO:0000255|HAMAP-Rule:MF_00347}. CC -!- CATALYTIC ACTIVITY: ATP + (phosphate)(n) = ADP + (phosphate)(n+1). CC {ECO:0000255|HAMAP-Rule:MF_00347}. CC -!- PTM: An intermediate of this reaction is the autophosphorylated CC ppk in which a phosphate is covalently linked to histidine CC residues through a N-P bond. {ECO:0000255|HAMAP-Rule:MF_00347}. CC -!- SIMILARITY: Belongs to the polyphosphate kinase family. CC {ECO:0000255|HAMAP-Rule:MF_00347}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08054.1; -; Genomic_DNA. DR PIR; B64646; B64646. DR RefSeq; NP_207800.1; NC_000915.1. DR RefSeq; WP_001078673.1; NC_018939.1. DR ProteinModelPortal; O25654; -. DR DIP; DIP-3657N; -. DR IntAct; O25654; 1. DR MINT; MINT-170383; -. DR STRING; 85962.HP1010; -. DR PaxDb; O25654; -. DR PRIDE; O25654; -. DR DNASU; 899545; -. DR EnsemblBacteria; AAD08054; AAD08054; HP_1010. DR GeneID; 899545; -. DR KEGG; heo:C694_05230; -. DR KEGG; hpy:HP1010; -. DR PATRIC; 20593355; VBIHelPyl33062_1058. DR eggNOG; ENOG4105CUU; Bacteria. DR eggNOG; COG0855; LUCA. DR KO; K00937; -. DR OMA; LSSMIHA; -. DR OrthoDB; EOG65TRRG; -. DR BioCyc; HPY:HP1010-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009358; C:polyphosphate kinase complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008976; F:polyphosphate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006799; P:polyphosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1840.10; -; 1. DR HAMAP; MF_00347; Polyphosphate_kinase; 1. DR InterPro; IPR003414; PP_kinase. DR InterPro; IPR024953; PP_kinase_middle. DR InterPro; IPR025200; PPK_C_dom. DR InterPro; IPR025198; PPK_N_dom. DR Pfam; PF02503; PP_kinase; 1. DR Pfam; PF13090; PP_kinase_C; 1. DR Pfam; PF13089; PP_kinase_N; 1. DR PIRSF; PIRSF015589; PP_kinase; 1. DR SUPFAM; SSF140356; SSF140356; 1. DR TIGRFAMs; TIGR03705; poly_P_kin; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Nucleotide-binding; KW Phosphoprotein; Reference proteome; Transferase. FT CHAIN 1 675 Polyphosphate kinase. FT /FTId=PRO_0000128643. FT ACT_SITE 431 431 Phosphohistidine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00347}. FT ACT_SITE 450 450 Phosphohistidine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00347}. SQ SEQUENCE 675 AA; 77991 MW; A7C32517E4A47086 CRC64; MNRFFNRELS WLAFNTRVLN EAKDESLPLL ERLKFLAIYD TNLDEFYMIR VAGLKQLYEH KIASKGIDGA SPEEQLEKIK HYLAHEIEER ELEFQKIQAL LFKKGLCITP YNELNLEQKA KAKTYFKEQL YALVLPFKLD SSHTFPPLAN LTFALFARIK DKETQIISYA LIKLPSFIFR FVELEKGLFV LAEEIVEAHL EELFLEHEIL DCMAFRVTCD ADIAITEDEA HDYADLMSKS LRKRNQGEIV RLQTQKGSQE LLKTLLASLR SFQTHSYKKH KLTGMHIYKS AIMLNLGDLW ELVNHSDFKA LKSPNFTPKI HPHFNENDLF KSIEKQDLLL FHPYESFEPV IDLIEQAASD PATLSIKMTL YRVGKHSPIV KALIEAASKI QVSVLVELKA RFDEESNLHW AKALERAGAL VVYGVFKLKV HAKMLLITKK TDNQLRHFTH LSTGNYNPLS AKVYTDVSFF SAKNEIANDI IKLFHSLLTS SATNSALETL FMAPKQIKPK IIELIQNEMN HQQEGYIILK ANALVDSEII EWLYQASQKG VKIDLIIRGI CCLKPQVKGL SENIRVYSIV GKYLEHARIY YFKHENIYFS SADLMPRNLE RRVELLIPAT NPKIAHKLLH ILEIQLKDTL KRYELNSKGR YIKVSNPNDP LNSQDYFEKQ ALKTF // ID PLSX_HELPY Reviewed; 337 AA. AC O24993; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 11-NOV-2015, entry version 91. DE RecName: Full=Phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; DE EC=2.3.1.n2 {ECO:0000255|HAMAP-Rule:MF_00019}; DE AltName: Full=Acyl-ACP phosphotransacylase {ECO:0000255|HAMAP-Rule:MF_00019}; DE AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; DE AltName: Full=Phosphate-acyl-ACP acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; GN Name=plsX {ECO:0000255|HAMAP-Rule:MF_00019}; GN OrderedLocusNames=HP_0201; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible formation of acyl-phosphate CC (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This CC enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. CC {ECO:0000255|HAMAP-Rule:MF_00019}. CC -!- CATALYTIC ACTIVITY: Acyl-[acyl-carrier-protein] + phosphate = CC acyl-phosphate + [acyl-carrier-protein]. {ECO:0000255|HAMAP- CC Rule:MF_00019}. CC -!- PATHWAY: Lipid metabolism; phospholipid metabolism. CC {ECO:0000255|HAMAP-Rule:MF_00019}. CC -!- SUBUNIT: Homodimer. Probably interacts with PlsY. CC {ECO:0000255|HAMAP-Rule:MF_00019}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00019}. CC Note=Associated with the membrane possibly through PlsY. CC {ECO:0000255|HAMAP-Rule:MF_00019}. CC -!- SIMILARITY: Belongs to the PlsX family. {ECO:0000255|HAMAP- CC Rule:MF_00019}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07269.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07269.1; ALT_INIT; Genomic_DNA. DR PIR; A64545; A64545. DR RefSeq; NP_207000.1; NC_000915.1. DR RefSeq; WP_000975947.1; NC_000915.1. DR RefSeq; WP_001862855.1; NC_018939.1. DR ProteinModelPortal; O24993; -. DR STRING; 85962.HP0201; -. DR PaxDb; O24993; -. DR EnsemblBacteria; AAD07269; AAD07269; HP_0201. DR GeneID; 898919; -. DR KEGG; heo:C694_01000; -. DR KEGG; hpy:HP0201; -. DR PATRIC; 20591623; VBIHelPyl33062_0211. DR eggNOG; ENOG4105C6B; Bacteria. DR eggNOG; COG0416; LUCA. DR KO; K03621; -. DR OMA; KFCLRTM; -. DR OrthoDB; EOG68H88P; -. DR UniPathway; UPA00085; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0016747; F:transferase activity, transferring acyl groups other than amino-acyl groups; IEA:UniProtKB-EC. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.718.10; -; 1. DR HAMAP; MF_00019; PlsX; 1. DR InterPro; IPR003664; FA_synthesis. DR InterPro; IPR024084; IsoPropMal-DH-like_dom. DR InterPro; IPR012281; Phospholipid_synth_PlsX-like. DR Pfam; PF02504; FA_synthesis; 1. DR PIRSF; PIRSF002465; Phsphlp_syn_PlsX; 1. DR TIGRFAMs; TIGR00182; plsX; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Lipid biosynthesis; Lipid metabolism; KW Phospholipid biosynthesis; Phospholipid metabolism; KW Reference proteome; Transferase. FT CHAIN 1 337 Phosphate acyltransferase. FT /FTId=PRO_0000189887. SQ SEQUENCE 337 AA; 36352 MW; 7916CD4F5911B23C CRC64; MKIVIDLMGA DHGVLPVIEG VSRALENKSF STVLVGDKDK ATPFISKELA SKVEMIHTQD YIKMEEAATE AIKRKESSIY LGMDILKNGA DALISAGHSG ATMGLATLRL GRIKGVERPA ICTLMPSVGK RPSVLLDAGA NTDCKPEYLI DFALMGYEYA KSVLHYDSPK VGLLSNGEED IKGNMLVKET HKMLKAYDFF YGNVEGSDIF KGVVDVVVCD GFMGNVVLKT TEGVASAIGS IFKDEIKSSF KSKMGALMLK NAFDILKQKT DYAEYGGAPL LGVNKSVIIS HGKSNARAIE CAIYQAISAV ESQVCLRITQ AFESLKPSVS QSDQQDA // ID PLSY_HELPY Reviewed; 220 AA. AC O26039; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-MAY-2016, entry version 103. DE RecName: Full=Glycerol-3-phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; DE AltName: Full=Acyl-PO4 G3P acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; DE AltName: Full=Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; DE AltName: Full=G3P acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; DE Short=GPAT {ECO:0000255|HAMAP-Rule:MF_01043}; DE EC=2.3.1.n3 {ECO:0000255|HAMAP-Rule:MF_01043}; DE AltName: Full=Lysophosphatidic acid synthase {ECO:0000255|HAMAP-Rule:MF_01043}; DE Short=LPA synthase {ECO:0000255|HAMAP-Rule:MF_01043}; GN Name=plsY {ECO:0000255|HAMAP-Rule:MF_01043}; GN OrderedLocusNames=HP_1509; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the transfer of an acyl group from acyl- CC phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form CC lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate CC as fatty acyl donor, but not acyl-CoA or acyl-ACP. CC {ECO:0000255|HAMAP-Rule:MF_01043}. CC -!- CATALYTIC ACTIVITY: Acyl-phosphate + sn-glycerol 3-phosphate = 1- CC acyl-sn-glycerol 3-phosphate + phosphate. {ECO:0000255|HAMAP- CC Rule:MF_01043}. CC -!- PATHWAY: Lipid metabolism; phospholipid metabolism. CC {ECO:0000255|HAMAP-Rule:MF_01043}. CC -!- SUBUNIT: Probably interacts with PlsX. {ECO:0000255|HAMAP- CC Rule:MF_01043}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01043}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01043}. CC -!- SIMILARITY: Belongs to the PlsY family. {ECO:0000255|HAMAP- CC Rule:MF_01043}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08551.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08551.1; ALT_INIT; Genomic_DNA. DR PIR; E64708; E64708. DR RefSeq; NP_208300.1; NC_000915.1. DR RefSeq; WP_000124228.1; NC_000915.1. DR RefSeq; WP_000446716.1; NC_018939.1. DR STRING; 85962.HP1509; -. DR PaxDb; O26039; -. DR EnsemblBacteria; AAD08551; AAD08551; HP_1509. DR GeneID; 899782; -. DR KEGG; heo:C694_07815; -. DR KEGG; hpy:HP1509; -. DR PATRIC; 20594433; VBIHelPyl33062_1585. DR eggNOG; ENOG4105K7Z; Bacteria. DR eggNOG; COG0344; LUCA. DR KO; K08591; -. DR OMA; HSQYPKI; -. DR OrthoDB; EOG6M6JSX; -. DR UniPathway; UPA00085; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0043772; F:acyl-phosphate glycerol-3-phosphate acyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01043; PlsY; 1. DR InterPro; IPR003811; G3P_acylTferase_PlsY. DR Pfam; PF02660; G3P_acyltransf; 1. DR SMART; SM01207; G3P_acyltransf; 1. DR TIGRFAMs; TIGR00023; TIGR00023; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; KW Lipid biosynthesis; Lipid metabolism; Membrane; KW Phospholipid biosynthesis; Phospholipid metabolism; KW Reference proteome; Transferase; Transmembrane; Transmembrane helix. FT CHAIN 1 220 Glycerol-3-phosphate acyltransferase. FT /FTId=PRO_0000188381. FT TRANSMEM 11 31 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. FT TRANSMEM 70 90 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. FT TRANSMEM 96 116 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. FT TRANSMEM 127 147 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. FT TRANSMEM 153 173 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. FT TRANSMEM 193 213 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01043}. SQ SEQUENCE 220 AA; 23804 MW; E72004BFF4AB882B CRC64; MESVLNFLTN INVIFTLLGY LIGGIPFGYA LMKIFYGMDI TKIGSGGIGA TNVLRALQSK GVSNAKQMAL LVLILDLFKG MFAVFLSKLF GLDYSLQWMV AIASILGHCY SPFLNFNGGK GVSTIMGSVV LLIPIESLIG LTVWFFVGKV LKISSLASIL GVGTATVLIF FVPYMHIPDS VNILKEVGTQ TPMVLIFIFT LIKHAGNIFN LLAGKEKKVL // ID PPIA_HELPY Reviewed; 163 AA. AC O25982; DT 15-NOV-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=Peptidyl-prolyl cis-trans isomerase; DE Short=PPIase; DE EC=5.2.1.8; DE AltName: Full=Rotamase; GN Name=ppiA; OrderedLocusNames=HP_1441; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: PPIases accelerate the folding of proteins. It catalyzes CC the cis-trans isomerization of proline imidic peptide bonds in CC oligopeptides (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Peptidylproline (omega=180) = peptidylproline CC (omega=0). CC -!- SIMILARITY: Belongs to the cyclophilin-type PPIase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 PPIase cyclophilin-type domain. CC {ECO:0000255|PROSITE-ProRule:PRU00156}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08479.1; -; Genomic_DNA. DR PIR; A64700; A64700. DR RefSeq; NP_208232.1; NC_000915.1. DR RefSeq; WP_000969162.1; NC_000915.1. DR ProteinModelPortal; O25982; -. DR STRING; 85962.HP1441; -. DR PaxDb; O25982; -. DR PRIDE; O25982; -. DR EnsemblBacteria; AAD08479; AAD08479; HP_1441. DR GeneID; 899853; -. DR KEGG; hpy:HP1441; -. DR PATRIC; 20594289; VBIHelPyl33062_1513. DR eggNOG; ENOG4108R5K; Bacteria. DR eggNOG; COG0652; LUCA. DR KO; K03768; -. DR OMA; HNPNKHK; -. DR OrthoDB; EOG6DRPKW; -. DR BioCyc; HPY:HP1441-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 2.40.100.10; -; 1. DR InterPro; IPR029000; Cyclophilin-like_dom. DR InterPro; IPR024936; Cyclophilin-type_PPIase. DR InterPro; IPR020892; Cyclophilin-type_PPIase_CS. DR InterPro; IPR002130; Cyclophilin-type_PPIase_dom. DR PANTHER; PTHR11071; PTHR11071; 1. DR Pfam; PF00160; Pro_isomerase; 1. DR PIRSF; PIRSF001467; Peptidylpro_ismrse; 1. DR PRINTS; PR00153; CSAPPISMRASE. DR SUPFAM; SSF50891; SSF50891; 1. DR PROSITE; PS00170; CSA_PPIASE_1; 1. DR PROSITE; PS50072; CSA_PPIASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; Rotamase. FT CHAIN 1 163 Peptidyl-prolyl cis-trans isomerase. FT /FTId=PRO_0000064199. FT DOMAIN 17 163 PPIase cyclophilin-type. FT {ECO:0000255|PROSITE-ProRule:PRU00156}. SQ SEQUENCE 163 AA; 17621 MW; 8C1F0648DA84955B CRC64; MMDPIKTYEI KEEELAKTAY ATIKTNKGNI ALELFYKDAP QAVSNFVTLA KEGFYNGLNF HRVIAGFVAQ GGCPYGTGTG GPGHRIKCEV AHNPNKHKRG SISMAHAGRD TGGSQFFLCF VDLPHLDGEH TVFGKITSAE GLSVLDKIKQ GDIIESVVFS SSL // ID PRIA_HELPY Reviewed; 619 AA. AC O25149; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Primosomal protein N' {ECO:0000255|HAMAP-Rule:MF_00983}; DE EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_00983}; DE AltName: Full=ATP-dependent helicase PriA {ECO:0000255|HAMAP-Rule:MF_00983}; GN Name=priA {ECO:0000255|HAMAP-Rule:MF_00983}; GN OrderedLocusNames=HP_0387; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the restart of stalled replication forks. CC Recognizes and binds the arrested nascent DNA chain at stalled CC replication forks. It can open the DNA duplex, via its helicase CC activity, and promote assembly of the primosome and loading of the CC major replicative helicase DnaB onto DNA. {ECO:0000255|HAMAP- CC Rule:MF_00983}. CC -!- SUBUNIT: Component of the primosome. {ECO:0000255|HAMAP- CC Rule:MF_00983}. CC -!- SIMILARITY: Belongs to the helicase family. PriA subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00983}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000255|HAMAP-Rule:MF_00983}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000255|HAMAP-Rule:MF_00983}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07452.1; -; Genomic_DNA. DR PIR; C64568; C64568. DR RefSeq; NP_207185.1; NC_000915.1. DR RefSeq; WP_000499252.1; NC_018939.1. DR ProteinModelPortal; O25149; -. DR STRING; 85962.HP0387; -. DR PaxDb; O25149; -. DR PRIDE; O25149; -. DR EnsemblBacteria; AAD07452; AAD07452; HP_0387. DR GeneID; 900080; -. DR KEGG; heo:C694_01965; -. DR KEGG; hpy:HP0387; -. DR PATRIC; 20592013; VBIHelPyl33062_0400. DR eggNOG; ENOG4105C25; Bacteria. DR eggNOG; COG1198; LUCA. DR KO; K04066; -. DR OMA; HDDAYKS; -. DR OrthoDB; EOG6KT2K4; -. DR BioCyc; HPY:HP0387-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006269; P:DNA replication, synthesis of RNA primer; IEA:UniProtKB-KW. DR GO; GO:0006268; P:DNA unwinding involved in DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 3. DR HAMAP; MF_00983; PriA; 1. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005259; PriA. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR TIGRFAMs; TIGR00595; priA; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA replication; DNA-binding; KW Helicase; Hydrolase; Metal-binding; Nucleotide-binding; Primosome; KW Reference proteome; Zinc; Zinc-finger. FT CHAIN 1 619 Primosomal protein N'. FT /FTId=PRO_0000102125. FT DOMAIN 119 285 Helicase ATP-binding. {ECO:0000255|HAMAP- FT Rule:MF_00983}. FT DOMAIN 371 532 Helicase C-terminal. {ECO:0000255|HAMAP- FT Rule:MF_00983}. FT NP_BIND 132 139 ATP. {ECO:0000255|HAMAP-Rule:MF_00983}. FT ZN_FING 336 348 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00983}. FT ZN_FING 363 379 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00983}. FT MOTIF 228 231 DEAH box. SQ SEQUENCE 619 AA; 70361 MW; 7E53B7DE6D36CCAC CRC64; MFYHLIAPLK NKTPPLTYFS KEQHQKGALV NIPLRNKTLL GVVLEEVSKP SFECLELEKT PYFLLPFQME LAIFIAQYYS ANLSSVLSLF APFKECDLVG LEKIEPILNI LSQTQTNALK ELQKHSASLL FGDTGSGKTE IYMHAIAQTL EQKKSALLLV PEIALTPQMQ QRLKRVFKEN LGLWHSKLSQ NQKKQFLEKL YSQEIKLVVG TRSALFLPLK ELGLIIVDEE HDFSYKSHQS PMYNARDLCL YLSHKFPIQV ILGSATPSLN SYKRFKDKAL VRLKGRYTPT QKNIIFEKTE RFITPKLLEA LQQVLDKNEQ AIIFVPTRAN FKTLLCQSCY KSVQCPFCSV NMSLHLKTNK LMCHYCHFSS PIPKICSACQ SEVLVGKRIG TMQVLKELES LLEGAKIAIL DKDHTSTQKK LHNILNDFNA QKTNILIGTQ MISKGHDYAK VSLAVVLGID NIIKSNSYRA LEEGVSLLYQ IAGRSARQIS GQVFIQSTET DLLENFLEDY EDFLQYELQE RCELYPPFSR LCLLEFKHKN EEKAQQLSLK ASQTLSSCLE KGVTLSNFKA PIEKIASSYR YLILLRSKNP LSLIKSVHAF LKSAPSIPCS VNMDPVDIF // ID PPSA_HELPY Reviewed; 812 AA. AC P56070; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 20-JAN-2016, entry version 103. DE RecName: Full=Phosphoenolpyruvate synthase; DE Short=PEP synthase; DE EC=2.7.9.2; DE AltName: Full=Pyruvate, water dikinase; GN Name=ppsA; OrderedLocusNames=HP_0121; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of pyruvate to CC phosphoenolpyruvate. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + pyruvate + H(2)O = AMP + CC phosphoenolpyruvate + phosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC -!- DOMAIN: The N-terminal domain contains the ATP/Pi binding site, CC the central domain the pyrophosphate/phosphate carrier histidine, CC and the C-terminal domain the pyruvate binding site. CC {ECO:0000250}. CC -!- MISCELLANEOUS: The reaction takes place in three steps, mediated CC by a phosphocarrier histidine residue located on the surface of CC the central domain. The two first partial reactions are catalyzed CC at an active site located on the N-terminal domain, and the third CC partial reaction is catalyzed at an active site located on the C- CC terminal domain. For catalytic turnover, the central domain CC swivels from the concave surface of the N-terminal domain to that CC of the C-terminal domain (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the PEP-utilizing enzyme family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07191.1; -; Genomic_DNA. DR PIR; A64535; A64535. DR RefSeq; NP_206921.1; NC_000915.1. DR RefSeq; WP_001269108.1; NC_018939.1. DR ProteinModelPortal; P56070; -. DR DIP; DIP-3685N; -. DR IntAct; P56070; 1. DR MINT; MINT-180990; -. DR STRING; 85962.HP0121; -. DR PaxDb; P56070; -. DR PRIDE; P56070; -. DR EnsemblBacteria; AAD07191; AAD07191; HP_0121. DR GeneID; 900337; -. DR KEGG; heo:C694_00600; -. DR KEGG; hpy:HP0121; -. DR PATRIC; 20591459; VBIHelPyl33062_0129. DR eggNOG; ENOG4108HRN; Bacteria. DR eggNOG; COG0574; LUCA. DR KO; K01007; -. DR OMA; QIRQWIM; -. DR OrthoDB; EOG632CZ4; -. DR BioCyc; HPY:HP0121-MONOMER; -. DR UniPathway; UPA00138; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008986; F:pyruvate, water dikinase activity; IEA:UniProtKB-EC. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-UniPathway. DR GO; GO:0006090; P:pyruvate metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.60; -; 1. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.50.30.10; -; 1. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR008279; PEP-util_enz_mobile_dom. DR InterPro; IPR006319; PEP_synth. DR InterPro; IPR018274; PEP_util_AS. DR InterPro; IPR000121; PEP_util_C. DR InterPro; IPR023151; PEP_util_CS. DR InterPro; IPR002192; PPDK_PEP-bd. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR Pfam; PF00391; PEP-utilizers; 1. DR Pfam; PF02896; PEP-utilizers_C; 1. DR Pfam; PF01326; PPDK_N; 1. DR PIRSF; PIRSF000854; PEP_synthase; 1. DR SUPFAM; SSF51621; SSF51621; 1. DR SUPFAM; SSF52009; SSF52009; 1. DR TIGRFAMs; TIGR01418; PEP_synth; 1. DR PROSITE; PS00742; PEP_ENZYMES_2; 1. DR PROSITE; PS00370; PEP_ENZYMES_PHOS_SITE; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 812 Phosphoenolpyruvate synthase. FT /FTId=PRO_0000147036. FT ACT_SITE 430 430 Tele-phosphohistidine intermediate. FT {ECO:0000250}. FT ACT_SITE 761 761 Proton donor. {ECO:0000250}. FT METAL 690 690 Magnesium. {ECO:0000250}. FT METAL 714 714 Magnesium. {ECO:0000250}. FT BINDING 520 520 Substrate. {ECO:0000250}. FT BINDING 588 588 Substrate. {ECO:0000250}. FT BINDING 690 690 Substrate. {ECO:0000250}. FT BINDING 711 711 Substrate; via carbonyl oxygen. FT {ECO:0000250}. FT BINDING 712 712 Substrate; via amide nitrogen. FT {ECO:0000250}. FT BINDING 713 713 Substrate. {ECO:0000250}. FT BINDING 714 714 Substrate; via amide nitrogen. FT {ECO:0000250}. SQ SEQUENCE 812 AA; 91273 MW; 56D660703B134AA3 CRC64; MRYIKFFKEL NNKNVNLVGG KNASIGEMFQ ELVPIGIKVP DGFAITSEAY WYLLEQGGAK QKIIELLENV DATEIDVLKI RSKQIRELIF GTPFPSDLRD EIFQAYEILS QQYHMKEADV AVRSSATAED LPDASFAGQQ DTYLNIKGKT ELIHYIKSCL ASLFTDRAIS YRASRGFDHL KVALSVGVQK MVRADKGSAG VMFSIDTETG FKDAVFITSA WGLGENVVGG TINPDEFYVF KPTLEQNKRP IIKRQLGNKT QKMVYAPRGS EHPTRNIKTT KKEWQSFSLS DEDVLILAKY AIEIEKHYSK EAKQYRPMDI EWAKDGESGE IFIVQARPET VQSQKSKEES QVFEKFKFKN PNEKKEIILQ GRAIGSKIGS GKVRIINDLE HMNSFKEGEI LVTDNTDPDW EPCMKKASAV ITNRGGRTCH AAIVAREIGV PAIVGVSGAT DSLYTGMEIT VSCAEGEEGY VYAGIYEHEI ERVELSNMQE TQTKIYINIG NPEKAFGFSQ LPNHGVGLAR MEMIILNQIK AHPLALVDLH HKKSVKEKNE IENLMAGYAN PKDFFVKKIA EGIGMISAAF YPKPVIVRTS DFKSNEYMRM LGGSSYEPNE ENPMLGYRGA SRYYSESYNE AFSWECEALA LVREEMGLTN MKVMIPFLRT IEEGKKVLEI LRKNNLESGK NGLEIYIMCE LPVNVILADD FLSLFDGFSI GSNDLTQLTL GVDRDSELVS HVFDERNEAM LKMFKKAIEA CKRHNKYCGI CGQAPSDYPE VTEFLVKEGI TSISLNPDSV IPTWNAVAKL EKELKEHGLT EH // ID PRMA_HELPY Reviewed; 333 AA. AC O07678; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 98. DE RecName: Full=Ribosomal protein L11 methyltransferase; DE Short=L11 Mtase; DE EC=2.1.1.-; GN Name=prmA; Synonyms=hsm; OrderedLocusNames=HP_1068; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Methylates ribosomal protein L11. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. PrmA CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U97567; AAB66376.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08114.1; -; Genomic_DNA. DR PIR; D64653; D64653. DR RefSeq; NP_207859.1; NC_000915.1. DR RefSeq; WP_000917395.1; NC_018939.1. DR ProteinModelPortal; O07678; -. DR DIP; DIP-3670N; -. DR IntAct; O07678; 2. DR MINT; MINT-4076544; -. DR STRING; 85962.HP1068; -. DR PaxDb; O07678; -. DR PRIDE; O07678; -. DR EnsemblBacteria; AAD08114; AAD08114; HP_1068. DR GeneID; 899604; -. DR KEGG; heo:C694_05520; -. DR KEGG; hpy:HP1068; -. DR PATRIC; 20593475; VBIHelPyl33062_1117. DR eggNOG; ENOG4105F59; Bacteria. DR eggNOG; COG2264; LUCA. DR KO; K02687; -. DR OMA; ARNITSI; -. DR OrthoDB; EOG6N684G; -. DR BioCyc; HPY:HP1068-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008276; F:protein methyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00735; Methyltr_PrmA; 1. DR InterPro; IPR004498; Ribosomal_PrmA_MeTrfase. DR InterPro; IPR029063; SAM-dependent_MTases. DR PIRSF; PIRSF000401; RPL11_MTase; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00406; prmA; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 333 Ribosomal protein L11 methyltransferase. FT /FTId=PRO_0000192269. FT VARIANT 22 22 S -> N (in strain: NCTC 11638). FT VARIANT 27 27 A -> T (in strain: NCTC 11638). FT VARIANT 50 50 G -> E (in strain: NCTC 11638). FT VARIANT 61 61 A -> T (in strain: NCTC 11638). FT VARIANT 65 65 P -> S (in strain: NCTC 11638). FT VARIANT 78 78 P -> S (in strain: NCTC 11638). FT VARIANT 90 92 QKD -> EEN (in strain: NCTC 11638). FT VARIANT 99 99 P -> L (in strain: NCTC 11638). FT VARIANT 107 107 N -> S (in strain: NCTC 11638). FT VARIANT 109 109 K -> Q (in strain: NCTC 11638). FT VARIANT 144 144 T -> A (in strain: NCTC 11638). FT VARIANT 190 191 DI -> NL (in strain: NCTC 11638). FT VARIANT 251 251 I -> V (in strain: NCTC 11638). FT VARIANT 317 317 Q -> K (in strain: NCTC 11638). SQ SEQUENCE 333 AA; 38160 MW; 92E2B9F221F827AF CRC64; MLKPMYYEFF FIFPKERELF ESFLLDATHL ALEESSLENL KAFDDKETIG FISQSNWHYF ATHDPLKKDL KENLKEKPPH LKNFVILRSQ KDLNNSLIPA LEAFCLNLKQ NLQSEFDFFY LSRNLASKDW LEAYKQAILP VQCTKFYIHP SWHQKPSHVV TNDCIMIDPA LAFGSGHHES TSMCLELLSD IDLKRKNALD VGCGSGILSI ALKKQGVSAL VACDTDSLAV EETLKNFSLN QIPLLVQDKV IYGSTQKIEG RFDVIVANLV ADVIKSLYSE FVRLCNHTLI LSGILETHLN SVLQIYYNGF EVLEQRQRNE WVALKLLKKQ PIN // ID PSEC_HELPY Reviewed; 375 AA. AC O25130; DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 86. DE RecName: Full=UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; DE EC=2.6.1.92; DE AltName: Full=Pseudaminic acid biosynthesis protein C; GN Name=pseC; OrderedLocusNames=HP_0366; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16751642; DOI=10.1093/glycob/cwl010; RA Schoenhofen I.C., McNally D.J., Brisson J.R., Logan S.M.; RT "Elucidation of the CMP-pseudaminic acid pathway in Helicobacter RT pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic RT reaction."; RL Glycobiology 16:8C-14C(2006). RN [3] RP FUNCTION, AND CATALYTIC ACTIVITY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16286454; DOI=10.1074/jbc.M511021200; RA Schoenhofen I.C., McNally D.J., Vinogradov E., Whitfield D., RA Young N.M., Dick S., Wakarchuk W.W., Brisson J.R., Logan S.M.; RT "Functional characterization of dehydratase/aminotransferase pairs RT from Helicobacter and Campylobacter: enzymes distinguishing the RT pseudaminic acid and bacillosamine biosynthetic pathways."; RL J. Biol. Chem. 281:723-732(2006). RN [4] RP X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH PYRIDOXAL RP PHOSPHATE AND URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE, FUNCTION, RP CATALYTIC ACTIVITY, SUBUNIT, BIOPHYSICOCHEMICAL PROPERTIES, PYRIDOXAL RP PHOSPHATE-BINDING SITE LYS-183, AND MUTAGENESIS OF HIS-180 AND RP LYS-183. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16421095; DOI=10.1074/jbc.M512987200; RA Schoenhofen I.C., Lunin V.V., Julien J.P., Li Y., Ajamian E., RA Matte A., Cygler M., Brisson J.R., Aubry A., Logan S.M., Bhatia S., RA Wakarchuk W.W., Young N.M.; RT "Structural and functional characterization of PseC, an RT aminotransferase involved in the biosynthesis of pseudaminic acid, an RT essential flagellar modification in Helicobacter pylori."; RL J. Biol. Chem. 281:8907-8916(2006). CC -!- FUNCTION: Catalyzes the second step in the biosynthesis of CC pseudaminic acid, a sialic-acid-like sugar that is used to modify CC flagellin. Uses UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-4- CC hexulose as substrate producing UDP-4-amino-4,6-dideoxy-beta-L- CC AltNAc. {ECO:0000269|PubMed:16286454, CC ECO:0000269|PubMed:16421095}. CC -!- CATALYTIC ACTIVITY: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L- CC altrosamine + 2-oxoglutarate = UDP-2-acetamido-2,6-dideoxy-beta-L- CC arabino-hex-4-ulose + L-glutamate. {ECO:0000269|PubMed:16286454, CC ECO:0000269|PubMed:16421095}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.2 mM for UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-4- CC hexulose {ECO:0000269|PubMed:16421095}; CC Note=kcat is 43 min(-1) with (2E,6E)-farnesyl UDP-2-acetamido- CC 2,6-dideoxy-beta-L-arabino-4-hexulose as substrate.; CC -!- SIMILARITY: Belongs to the DegT/DnrJ/EryC1 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07433.1; -; Genomic_DNA. DR PIR; F64565; F64565. DR RefSeq; NP_207164.1; NC_000915.1. DR RefSeq; WP_000657303.1; NC_018939.1. DR PDB; 2FN6; X-ray; 2.48 A; A/B=1-375. DR PDB; 2FNI; X-ray; 3.00 A; A/B=1-375. DR PDB; 2FNU; X-ray; 1.50 A; A/B=1-375. DR PDBsum; 2FN6; -. DR PDBsum; 2FNI; -. DR PDBsum; 2FNU; -. DR ProteinModelPortal; O25130; -. DR SMR; O25130; 1-374. DR STRING; 85962.HP0366; -. DR PaxDb; O25130; -. DR PRIDE; O25130; -. DR EnsemblBacteria; AAD07433; AAD07433; HP_0366. DR GeneID; 899219; -. DR KEGG; heo:C694_01855; -. DR KEGG; hpy:HP0366; -. DR PATRIC; 20591967; VBIHelPyl33062_0377. DR eggNOG; ENOG4105CF4; Bacteria. DR eggNOG; COG0399; LUCA. DR KO; K15895; -. DR OMA; QKLCKRH; -. DR OrthoDB; EOG6JQH30; -. DR BioCyc; HPY:HP0366-MONOMER; -. DR BioCyc; MetaCyc:MONOMER-14519; -. DR BRENDA; 2.6.1.92; 2604. DR EvolutionaryTrace; O25130; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000653; DegT/StrS_aminotransferase. DR InterPro; IPR020026; PseC. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF01041; DegT_DnrJ_EryC1; 1. DR PIRSF; PIRSF000390; PLP_StrS; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR03588; PseC; 1. PE 1: Evidence at protein level; KW 3D-structure; Aminotransferase; Complete proteome; KW Pyridoxal phosphate; Reference proteome; Transferase. FT CHAIN 1 375 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L- FT altrosamine transaminase. FT /FTId=PRO_0000418957. FT REGION 26 29 Substrate binding. FT REGION 313 316 Substrate binding. FT BINDING 6 6 Substrate. FT BINDING 56 56 Substrate; via amide nitrogen. FT BINDING 178 178 Substrate. FT BINDING 228 228 Substrate. FT MOD_RES 183 183 N6-(pyridoxal phosphate)lysine. FT MUTAGEN 180 180 H->N: Impaired catalytic activity. FT {ECO:0000269|PubMed:16421095}. FT MUTAGEN 183 183 K->R: Strongly impaired catalytic FT activity. {ECO:0000269|PubMed:16421095}. FT STRAND 4 6 {ECO:0000244|PDB:2FNU}. FT HELIX 13 23 {ECO:0000244|PDB:2FNU}. FT STRAND 29 31 {ECO:0000244|PDB:2FNU}. FT HELIX 32 45 {ECO:0000244|PDB:2FNU}. FT STRAND 48 54 {ECO:0000244|PDB:2FNU}. FT HELIX 56 66 {ECO:0000244|PDB:2FNU}. FT STRAND 76 79 {ECO:0000244|PDB:2FNU}. FT STRAND 81 83 {ECO:0000244|PDB:2FNU}. FT HELIX 86 93 {ECO:0000244|PDB:2FNU}. FT STRAND 97 100 {ECO:0000244|PDB:2FNU}. FT STRAND 107 109 {ECO:0000244|PDB:2FNU}. FT HELIX 111 113 {ECO:0000244|PDB:2FNU}. FT HELIX 115 117 {ECO:0000244|PDB:2FNU}. FT STRAND 122 128 {ECO:0000244|PDB:2FNU}. FT HELIX 130 132 {ECO:0000244|PDB:2FNU}. FT HELIX 137 147 {ECO:0000244|PDB:2FNU}. FT STRAND 150 154 {ECO:0000244|PDB:2FNU}. FT STRAND 170 178 {ECO:0000244|PDB:2FNU}. FT STRAND 183 185 {ECO:0000244|PDB:2FNU}. FT STRAND 191 196 {ECO:0000244|PDB:2FNU}. FT HELIX 198 207 {ECO:0000244|PDB:2FNU}. FT STRAND 212 218 {ECO:0000244|PDB:2FNU}. FT STRAND 220 224 {ECO:0000244|PDB:2FNU}. FT HELIX 233 243 {ECO:0000244|PDB:2FNU}. FT HELIX 246 264 {ECO:0000244|PDB:2FNU}. FT STRAND 268 273 {ECO:0000244|PDB:2FNU}. FT HELIX 274 276 {ECO:0000244|PDB:2FNU}. FT STRAND 286 290 {ECO:0000244|PDB:2FNU}. FT HELIX 292 297 {ECO:0000244|PDB:2FNU}. FT HELIX 298 307 {ECO:0000244|PDB:2FNU}. FT HELIX 319 321 {ECO:0000244|PDB:2FNU}. FT HELIX 323 329 {ECO:0000244|PDB:2FNU}. FT HELIX 335 343 {ECO:0000244|PDB:2FNU}. FT STRAND 344 347 {ECO:0000244|PDB:2FNU}. FT HELIX 355 372 {ECO:0000244|PDB:2FNU}. SQ SEQUENCE 375 AA; 42399 MW; CE6AAD3D475FDF64 CRC64; MKEFAYSEPC LDKEDKKAVL EVLNSKQLTQ GKRSLLFEEA LCEFLGVKHA LVFNSATSAL LTLYRNFSEF SADRNEIITT PISFVATANM LLESGYTPVF AGIKNDGNID ELALEKLINE RTKAIVSVDY AGKSVEVESV QKLCKKHSLS FLSDSSHALG SEYQNKKVGG FALASVFSFH AIKPITTAEG GAVVTNDSEL HEKMKLFRSH GMLKKDFFEG EVKSIGHNFR LNEIQSALGL SQLKKAPFLM QKREEAALTY DRIFKDNPYF TPLHPLLKDK SSNHLYPILM HQKFFTCKKL ILESLHKRGI LAQVHYKPIY QYQLYQQLFN TAPLKSAEDF YHAEISLPCH ANLNLESVQN IAHSVLKTFE SFKIE // ID PSEH_HELPY Reviewed; 180 AA. AC O25094; DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase; DE EC=2.3.1.202; DE AltName: Full=Pseudaminic acid biosynthesis protein H; GN Name=pseH; OrderedLocusNames=HP_0327; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, CATALYTIC ACTIVITY, AND PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16751642; DOI=10.1093/glycob/cwl010; RA Schoenhofen I.C., McNally D.J., Brisson J.R., Logan S.M.; RT "Elucidation of the CMP-pseudaminic acid pathway in Helicobacter RT pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic RT reaction."; RL Glycobiology 16:8C-14C(2006). CC -!- FUNCTION: Catalyzes the third step in the biosynthesis of CC pseudaminic acid, a sialic-acid-like sugar that is used to modify CC flagellin. Mediates N-4 acetylation of UDP-4-amino-4,6-dideoxy- CC beta-L-AltNAc to form UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L- CC altropyranose. {ECO:0000269|PubMed:16751642}. CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + UDP-4-amino-4,6-dideoxy-N-acetyl- CC beta-L-altrosamine = CoA + UDP-2,4-diacetamido-2,4,6-trideoxy- CC beta-L-altropyranose. {ECO:0000269|PubMed:16751642}. CC -!- SIMILARITY: Contains 1 N-acetyltransferase domain. CC {ECO:0000255|PROSITE-ProRule:PRU00532}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07394.1; -; Genomic_DNA. DR PIR; G64560; G64560. DR RefSeq; NP_207125.1; NC_000915.1. DR RefSeq; WP_000742697.1; NC_018939.1. DR PDB; 4RI1; X-ray; 2.30 A; A/B/C=1-180. DR PDBsum; 4RI1; -. DR ProteinModelPortal; O25094; -. DR DIP; DIP-3555N; -. DR IntAct; O25094; 4. DR MINT; MINT-171400; -. DR STRING; 85962.HP0327; -. DR PaxDb; O25094; -. DR PRIDE; O25094; -. DR DNASU; 900098; -. DR EnsemblBacteria; AAD07394; AAD07394; HP_0327. DR GeneID; 900098; -. DR KEGG; heo:C694_01655; -. DR KEGG; hpy:HP0327; -. DR PATRIC; 20591887; VBIHelPyl33062_0341. DR eggNOG; ENOG4105VDT; Bacteria. DR eggNOG; COG1670; LUCA. DR KO; K15896; -. DR OMA; NHYELEG; -. DR OrthoDB; EOG6C8MXK; -. DR BioCyc; HPY:HP0327-MONOMER; -. DR BioCyc; MetaCyc:HP0327-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR InterPro; IPR020036; PseH. DR SUPFAM; SSF55729; SSF55729; 1. DR TIGRFAMs; TIGR03585; PseH; 1. DR PROSITE; PS51186; GNAT; 1. PE 1: Evidence at protein level; KW 3D-structure; Acyltransferase; Complete proteome; Reference proteome; KW Transferase. FT CHAIN 1 180 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L- FT altrosamine N-acetyltransferase. FT /FTId=PRO_0000418961. FT DOMAIN 13 169 N-acetyltransferase. FT {ECO:0000255|PROSITE-ProRule:PRU00532}. FT STRAND 5 7 {ECO:0000244|PDB:4RI1}. FT STRAND 10 14 {ECO:0000244|PDB:4RI1}. FT HELIX 15 17 {ECO:0000244|PDB:4RI1}. FT HELIX 20 31 {ECO:0000244|PDB:4RI1}. FT HELIX 33 36 {ECO:0000244|PDB:4RI1}. FT STRAND 39 42 {ECO:0000244|PDB:4RI1}. FT HELIX 46 56 {ECO:0000244|PDB:4RI1}. FT STRAND 63 69 {ECO:0000244|PDB:4RI1}. FT STRAND 72 83 {ECO:0000244|PDB:4RI1}. FT TURN 84 87 {ECO:0000244|PDB:4RI1}. FT STRAND 88 95 {ECO:0000244|PDB:4RI1}. FT HELIX 103 115 {ECO:0000244|PDB:4RI1}. FT STRAND 121 128 {ECO:0000244|PDB:4RI1}. FT HELIX 132 140 {ECO:0000244|PDB:4RI1}. FT STRAND 144 155 {ECO:0000244|PDB:4RI1}. FT STRAND 158 168 {ECO:0000244|PDB:4RI1}. FT HELIX 169 177 {ECO:0000244|PDB:4RI1}. SQ SEQUENCE 180 AA; 21353 MW; 2565A24C8C770DCA CRC64; MKKNYSYKNI QAIDFTNLND GEKLLVLEFR NHPNTALWMY STFISLKTHL QFIEDLKNSP NHRYFLFKEE GVYLGVGSIT KINFFHKHGY LGIYKNPFLK NGGETILKAL EFIAFEEFQL HSLHLEVMEN NFKAIAFYEK NHYELEGRLK GFISKDKEFI DVLLYYKDKK GYNDQSLLKL // ID PSD_HELPY Reviewed; 267 AA. AC O25911; DT 03-JUL-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 86. DE RecName: Full=Phosphatidylserine decarboxylase proenzyme {ECO:0000255|HAMAP-Rule:MF_00662}; DE EC=4.1.1.65 {ECO:0000255|HAMAP-Rule:MF_00662}; DE Contains: DE RecName: Full=Phosphatidylserine decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00662}; DE Contains: DE RecName: Full=Phosphatidylserine decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00662}; GN Name=psd {ECO:0000255|HAMAP-Rule:MF_00662}; OrderedLocusNames=HP_1357; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the formation of phosphatidylethanolamine CC (PtdEtn) from phosphatidylserine (PtdSer). {ECO:0000255|HAMAP- CC Rule:MF_00662}. CC -!- CATALYTIC ACTIVITY: Phosphatidyl-L-serine = CC phosphatidylethanolamine + CO(2). {ECO:0000255|HAMAP- CC Rule:MF_00662}. CC -!- COFACTOR: CC Name=pyruvate; Xref=ChEBI:CHEBI:15361; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00662}; CC Note=Binds 1 pyruvoyl group covalently per subunit. CC {ECO:0000255|HAMAP-Rule:MF_00662}; CC -!- PATHWAY: Phospholipid metabolism; phosphatidylethanolamine CC biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: CC step 2/2. {ECO:0000255|HAMAP-Rule:MF_00662}. CC -!- SUBUNIT: Heterodimer of a large membrane-associated beta subunit CC and a small pyruvoyl-containing alpha subunit. {ECO:0000255|HAMAP- CC Rule:MF_00662}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP- CC Rule:MF_00662}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00662}. CC -!- PTM: Is synthesized initially as an inactive proenzyme. Formation CC of the active enzyme involves a self-maturation process in which CC the active site pyruvoyl group is generated from an internal CC serine residue via an autocatalytic post-translational CC modification. Two non-identical subunits are generated from the CC proenzyme in this reaction, and the pyruvate is formed at the N- CC terminus of the alpha chain, which is derived from the carboxyl CC end of the proenzyme. The autoendoproteolytic cleavage occurs by a CC canonical serine protease mechanism, in which the side chain CC hydroxyl group of the serine supplies its oxygen atom to form the CC C-terminus of the beta chain, while the remainder of the serine CC residue undergoes an oxidative deamination to produce ammonia and CC the pyruvoyl prosthetic group on the alpha chain. During this CC reaction, the Ser that is part of the protease active site of the CC proenzyme becomes the pyruvoyl prosthetic group, which constitutes CC an essential element of the active site of the mature CC decarboxylase. {ECO:0000255|HAMAP-Rule:MF_00662}. CC -!- SIMILARITY: Belongs to the phosphatidylserine decarboxylase CC family. PSD-B subfamily. Prokaryotic type I sub-subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00662}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08399.1; -; Genomic_DNA. DR PIR; E64689; E64689. DR RefSeq; NP_208149.1; NC_000915.1. DR RefSeq; WP_000226149.1; NC_018939.1. DR ProteinModelPortal; O25911; -. DR DIP; DIP-3497N; -. DR IntAct; O25911; 1. DR MINT; MINT-160147; -. DR STRING; 85962.HP1357; -. DR PaxDb; O25911; -. DR PRIDE; O25911; -. DR EnsemblBacteria; AAD08399; AAD08399; HP_1357. DR GeneID; 900346; -. DR KEGG; heo:C694_07005; -. DR KEGG; hpy:HP1357; -. DR PATRIC; 20594101; VBIHelPyl33062_1421. DR eggNOG; ENOG4105DJ4; Bacteria. DR eggNOG; COG0688; LUCA. DR KO; K01613; -. DR OMA; LTSSMYH; -. DR OrthoDB; EOG6B8XK4; -. DR BioCyc; HPY:HP1357-MONOMER; -. DR UniPathway; UPA00558; UER00616. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004609; F:phosphatidylserine decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006646; P:phosphatidylethanolamine biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00662; PS_decarb_PSD_B_type1; 1. DR InterPro; IPR003817; PS_Dcarbxylase. DR InterPro; IPR033177; PSD. DR InterPro; IPR033178; PSD_type1_pro. DR PANTHER; PTHR10067; PTHR10067; 1. DR Pfam; PF02666; PS_Dcarbxylase; 1. DR TIGRFAMs; TIGR00163; PS_decarb; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Decarboxylase; Lipid biosynthesis; KW Lipid metabolism; Lyase; Membrane; Phospholipid biosynthesis; KW Phospholipid metabolism; Pyruvate; Reference proteome; Zymogen. FT CHAIN 1 235 Phosphatidylserine decarboxylase beta FT chain. {ECO:0000255|HAMAP-Rule:MF_00662}. FT /FTId=PRO_0000029665. FT CHAIN 236 267 Phosphatidylserine decarboxylase alpha FT chain. {ECO:0000255|HAMAP-Rule:MF_00662}. FT /FTId=PRO_0000029666. FT ACT_SITE 78 78 Charge relay system; for FT autoendoproteolytic cleavage activity. FT {ECO:0000255|HAMAP-Rule:MF_00662}. FT ACT_SITE 132 132 Charge relay system; for FT autoendoproteolytic cleavage activity. FT {ECO:0000255|HAMAP-Rule:MF_00662}. FT ACT_SITE 236 236 Charge relay system; for FT autoendoproteolytic cleavage activity. FT {ECO:0000255|HAMAP-Rule:MF_00662}. FT ACT_SITE 236 236 Schiff-base intermediate with substrate; FT via pyruvic acid; for decarboxylase FT activity. {ECO:0000255|HAMAP- FT Rule:MF_00662}. FT SITE 235 236 Cleavage (non-hydrolytic); by FT autocatalysis. {ECO:0000255|HAMAP- FT Rule:MF_00662}. FT MOD_RES 236 236 Pyruvic acid (Ser); by autocatalysis. FT {ECO:0000255|HAMAP-Rule:MF_00662}. SQ SEQUENCE 267 AA; 30201 MW; 8CE79AC4126E8A4A CRC64; MVALSNALSR VFGSLAGYKF PSFIQKGINA LYVKIFKIDL SEFEPLENYR SLNALFTRSL KKERPFDKSP NICIAPCDAL ITECAFLDND SALQIKGMPY KAHELVGEIN PLSPSFFYAN FYLSPKDYHH YHAPCDLEIL EARYFAGKLL PVNKPSLHKN NNLFVGNERV TLVAKDIQGN RLYFVAVGAL NVGKMRFNFD KNIQTNAKAR FTQTYSYNPP IKVKKGDNLG NFEMGSTIVL FIQNTAFKDL KEKNVKFGES IGEFHAN // ID PSEFG_HELPY Reviewed; 517 AA. AC O25093; DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 70. DE RecName: Full=Pseudaminic acid cytidylyltransferase and UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase; DE Includes: DE RecName: Full=Pseudaminic acid cytidylyltransferase; DE EC=2.7.7.81; DE AltName: Full=Pseudaminic acid biosynthesis protein F; DE Short=PseF; DE AltName: Full=Pseudaminic acid cytidylyltransferase HP_0326A; DE Includes: DE RecName: Full=UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase; DE EC=3.6.1.57; DE AltName: Full=Pseudaminic acid biosynthesis protein G; DE Short=PseG; DE AltName: Full=UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase HP_0326B; GN OrderedLocusNames=HP_0326; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP PATHWAY, FUNCTION, AND COFACTOR. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16751642; DOI=10.1093/glycob/cwl010; RA Schoenhofen I.C., McNally D.J., Brisson J.R., Logan S.M.; RT "Elucidation of the CMP-pseudaminic acid pathway in Helicobacter RT pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic RT reaction."; RL Glycobiology 16:8C-14C(2006). CC -!- FUNCTION: Catalyzes the fourth and sixth steps in the biosynthesis CC of pseudaminic acid, a sialic-acid-like sugar that is used to CC modify flagellin. The C-terminus mediates the fourth step of the CC pathway and catalyzes the removal of UDP from C-1 of UDP-2,4- CC diacetamido-2,4,6-trideoxy-beta-L-altropyranose forming 2,4- CC diacetamido-2,4,6-trideoxy-beta-L-altropyranose. The N-terminal CC part mediates the last step of the pathway by mediating activation CC of pseudaminic acid with CMP by forming CMP-pseudaminic acid. CC {ECO:0000269|PubMed:16751642}. CC -!- CATALYTIC ACTIVITY: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L- CC altropyranose + H(2)O = 2,4-diacetamido-2,4,6-trideoxy-beta-L- CC altropyranose + UDP. CC -!- CATALYTIC ACTIVITY: CTP + 5,7-diacetamido-3,5,7,9-tetradeoxy-L- CC glycero-alpha-L-manno-2-nonulopyranosonic acid = diphosphate + CC CMP-5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-2- CC nonulopyranosonic acid. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000269|PubMed:16751642}; CC Note=Mg(2+) is required for pseudaminic acid cytidylyltransferase CC activity. {ECO:0000269|PubMed:16751642}; CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- MISCELLANEOUS: In publications, PseF (HP_0326A) and PseG CC (HP_0326B) are separated into 2 separate ORFs (PubMed:16751642). CC However, these 2 enzymes are fused into a single protein in strain CC ATCC 700392 / 26695. {ECO:0000305|PubMed:16751642}. CC -!- SIMILARITY: In the N-terminal section; belongs to the CMP-NeuNAc CC synthase family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the PseG family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07393.1; -; Genomic_DNA. DR PIR; F64560; F64560. DR RefSeq; NP_207124.1; NC_000915.1. DR RefSeq; WP_001201399.1; NC_000915.1. DR ProteinModelPortal; O25093; -. DR DIP; DIP-3686N; -. DR IntAct; O25093; 1. DR MINT; MINT-164630; -. DR STRING; 85962.HP0326; -. DR PaxDb; O25093; -. DR PRIDE; O25093; -. DR EnsemblBacteria; AAD07393; AAD07393; HP_0326. DR GeneID; 899207; -. DR KEGG; hpy:HP0326; -. DR PATRIC; 20591885; VBIHelPyl33062_0340. DR eggNOG; ENOG4105F0R; Bacteria. DR eggNOG; COG1083; LUCA. DR eggNOG; COG3980; LUCA. DR KO; K00983; -. DR OrthoDB; EOG6QK4Q6; -. DR BioCyc; HPY:HP0326-MONOMER; -. DR BioCyc; MetaCyc:HP0326-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR003329; Cytidylyl_trans. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR InterPro; IPR020039; PseF. DR Pfam; PF02348; CTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR03584; PseF; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Magnesium; Metal-binding; KW Multifunctional enzyme; Nucleotidyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 517 Pseudaminic acid cytidylyltransferase and FT UDP-2,4-diacetamido-2,4,6-trideoxy-beta- FT L-altropyranose hydrolase. FT /FTId=PRO_0000418936. FT REGION 1 208 Pseudaminic acid cytidylyltransferase. FT REGION 209 517 UDP-2,4-diacetamido-2,4,6-trideoxy-beta- FT L-altropyranose hydrolase. FT ACT_SITE 244 244 Proton acceptor; for UDP-2,4-diacetamido- FT 2,4,6-trideoxy-beta-L-altropyranose FT hydrolase activity. {ECO:0000250}. SQ SEQUENCE 517 AA; 58934 MW; DF78B98ED41F6DA2 CRC64; MRAIAIVLAR SSSKRIKNKN IIDFFNKPML AYPIEVALNS KLFEKVFISS DSMEYVNLAK NYGASFLNLR PKILADDRAT TLEVMAYHME ELELKDEDIA CCLYGASALL QEKHLKNAFE TLNKNQNTDY VFTCSPFSAS PYRSFSLENG VQMAFKEHSN TRTQDLKTLY HDAGLLYMGK AQAFKEMRPI FSQNSIALEL SPLEVQDIAH FRRFRISQAQ IQPFEKRMPV KILCDCFLTS GLGHVRRCEK ILSFIEKLGV EASLYLHKQN NISAFLEGVG GNDFLITDSY CLNSKDFYLL KEKAKSLMVI EDTEHAKGFY PKNTKILNFT LNALKHYHHL SKDYQYYLGV GFYPVDARFI YDRPINTENK EVLITLGGSE QKTLKEIVKI LENKNVNLHI ISPYTPKNPP KNTHYYSPLN PLEFSSLMKS CACAISAAGQ TLYELALSQT PSLILPIASN QIIQSKEFES LGIFKQTSLK TLAKDFENLQ IQKNQAWAKN LVFGDKLEGA LREFLEI // ID PUR8_HELPY Reviewed; 440 AA. AC P56468; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Adenylosuccinate lyase; DE Short=ASL; DE EC=4.3.2.2; DE AltName: Full=Adenylosuccinase; DE Short=ASase; GN Name=purB; OrderedLocusNames=HP_1112; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: N(6)-(1,2-dicarboxyethyl)AMP = fumarate + AMP. CC -!- CATALYTIC ACTIVITY: (S)-2-(5-amino-1-(5-phospho-D- CC ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1- CC (5-phospho-D-ribosyl)imidazole-4-carboxamide. CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via de novo pathway; CC AMP from IMP: step 2/2. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5- CC amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2. CC -!- SUBUNIT: Homotetramer. Residues from neighboring subunits CC contribute catalytic and substrate-binding residues to each active CC site (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the lyase 1 family. Adenylosuccinate lyase CC subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08156.1; -; Genomic_DNA. DR PIR; H64658; H64658. DR RefSeq; NP_207903.1; NC_000915.1. DR RefSeq; WP_000893828.1; NC_018939.1. DR ProteinModelPortal; P56468; -. DR STRING; 85962.HP1112; -. DR PaxDb; P56468; -. DR PRIDE; P56468; -. DR EnsemblBacteria; AAD08156; AAD08156; HP_1112. DR GeneID; 899648; -. DR KEGG; heo:C694_05735; -. DR KEGG; hpy:HP1112; -. DR PATRIC; 20593565; VBIHelPyl33062_1162. DR eggNOG; ENOG4107QTF; Bacteria. DR eggNOG; COG0015; LUCA. DR KO; K01756; -. DR OMA; VQENAMK; -. DR OrthoDB; EOG686NDB; -. DR BioCyc; HPY:HP1112-MONOMER; -. DR UniPathway; UPA00074; UER00132. DR UniPathway; UPA00075; UER00336. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0070626; F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity; IEA:UniProtKB-EC. DR GO; GO:0004018; F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; IEA:UniProtKB-EC. DR GO; GO:0044208; P:'de novo' AMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 1.10.275.10; -; 1. DR InterPro; IPR019468; AdenyloSucc_lyase_C. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR020557; Fumarate_lyase_CS. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR InterPro; IPR004769; Pur_lyase. DR PANTHER; PTHR11444; PTHR11444; 1. DR Pfam; PF10397; ADSL_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SMART; SM00998; ADSL_C; 1. DR SUPFAM; SSF48557; SSF48557; 1. DR TIGRFAMs; TIGR00928; purB; 1. DR PROSITE; PS00163; FUMARATE_LYASES; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Purine biosynthesis; Reference proteome. FT CHAIN 1 440 Adenylosuccinate lyase. FT /FTId=PRO_0000137881. FT REGION 4 5 Substrate binding. {ECO:0000250}. FT REGION 67 69 Substrate binding. {ECO:0000250}. FT REGION 93 94 Substrate binding. {ECO:0000250}. FT REGION 268 270 Substrate binding. {ECO:0000250}. FT ACT_SITE 141 141 Proton donor/acceptor. {ECO:0000250}. FT ACT_SITE 262 262 Proton donor/acceptor. {ECO:0000250}. FT BINDING 212 212 Substrate. {ECO:0000250}. FT BINDING 276 276 Substrate. {ECO:0000250}. FT BINDING 301 301 Substrate. {ECO:0000250}. FT BINDING 306 306 Substrate. {ECO:0000250}. SQ SEQUENCE 440 AA; 50029 MW; 59587A4517404A46 CRC64; MLERYANEEM KALWNEQTKF ETYLEVEKAV VRAWNKLGQI QDSDCEKICA KAAFNLERIK EIEKTTKHDL IAFTTCVAES LGEESRFFHY GITSSDCIDT AMALLMTKSL KLIQKGVKNL YETLKNRALE HKDTLMVGRS HGVFGEPITF GLVLALFADE IKRHLKALDL TMEFISVGAI SGAMGNFAHA PLELEELACE FLGLKTANIS NQVIQRDRYA RLACDLALLA SSCEKIAVNI RHLQRSEVYE VEEAFSTGQK GSSAMPHKRN PILSENITGL CRVIRSFTTP MLENVALWHE RDMSHSSVER FALPDLFITS DFMLSRLNSV IKNLVVYPKN MLKNLALSGG LVFSQRVLLE LPKKGLSREE SYSIVQENAM KIWEVLQQGA FKNTDENLFL NALLNDERLK KYLSEDEIKA CFDYNYYTKN VGAIFKRVFE // ID PSS_HELPY Reviewed; 237 AA. AC Q48269; O07681; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 105. DE RecName: Full=CDP-diacylglycerol--serine O-phosphatidyltransferase; DE EC=2.7.8.8; DE AltName: Full=Phosphatidylserine synthase; GN Name=pssA; Synonyms=ptr; OrderedLocusNames=HP_1071; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=A68; RX PubMed=8550601; DOI=10.1074/jbc.271.1.446; RA Melchers K., Weitzenegger T., Buhmann A., Steinhilber W., Sachs G., RA Schaefer K.P.; RT "Cloning and membrane topology of a P type ATPase from Helicobacter RT pylori."; RL J. Biol. Chem. 271:446-457(1996). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43629 / JCM 7656 / NCTC 11639 / UA802; RX PubMed=9260935; RA Ge Z., Taylor D.E.; RT "The Helicobacter pylori gene encoding phosphatidylserine synthase: RT sequence, expression, and insertional mutagenesis."; RL J. Bacteriol. 179:4970-4976(1997). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: CDP-diacylglycerol + L-serine = CMP + (3-sn- CC phosphatidyl)-L-serine. CC -!- SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. CC -!- SIMILARITY: Belongs to the CDP-alcohol phosphatidyltransferase CC class-I family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U59625; AAB05473.1; -; Genomic_DNA. DR EMBL; U97567; AAB66379.1; -; Genomic_DNA. DR EMBL; AF005718; AAC45587.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08116.1; -; Genomic_DNA. DR PIR; G64653; G64653. DR RefSeq; NP_207862.1; NC_000915.1. DR RefSeq; WP_001122183.1; NC_018939.1. DR ProteinModelPortal; Q48269; -. DR STRING; 85962.HP1071; -. DR PaxDb; Q48269; -. DR PRIDE; Q48269; -. DR DNASU; 899607; -. DR EnsemblBacteria; AAD08116; AAD08116; HP_1071. DR GeneID; 899607; -. DR KEGG; heo:C694_05535; -. DR KEGG; hpy:HP1071; -. DR PATRIC; 20593481; VBIHelPyl33062_1120. DR eggNOG; ENOG4106PT6; Bacteria. DR eggNOG; COG1183; LUCA. DR KO; K17103; -. DR OMA; EPNVFIG; -. DR OrthoDB; EOG65XN45; -. DR BioCyc; HPY:HP1071-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0003882; F:CDP-diacylglycerol-serine O-phosphatidyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-KW. DR InterPro; IPR004533; CDP-diaglyc--ser_O-PTrfase. DR InterPro; IPR000462; CDP-OH_P_trans. DR Pfam; PF01066; CDP-OH_P_transf; 1. DR TIGRFAMs; TIGR00473; pssA; 1. DR PROSITE; PS00379; CDP_ALCOHOL_P_TRANSF; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Lipid biosynthesis; KW Lipid metabolism; Membrane; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome; Transferase; KW Transmembrane; Transmembrane helix. FT CHAIN 1 237 CDP-diacylglycerol--serine O- FT phosphatidyltransferase. FT /FTId=PRO_0000056794. FT TRANSMEM 3 23 Helical. {ECO:0000255}. FT TRANSMEM 25 45 Helical. {ECO:0000255}. FT TRANSMEM 73 93 Helical. {ECO:0000255}. FT TRANSMEM 95 115 Helical. {ECO:0000255}. FT TRANSMEM 124 144 Helical. {ECO:0000255}. FT TRANSMEM 150 170 Helical. {ECO:0000255}. FT TRANSMEM 184 204 Helical. {ECO:0000255}. FT TRANSMEM 207 227 Helical. {ECO:0000255}. FT VARIANT 84 84 A -> T (in strain: A68 and UA802). FT VARIANT 138 138 V -> M (in strain: NCTC 11638). FT VARIANT 202 202 R -> H (in strain: NCTC 11638). FT VARIANT 237 237 A -> T (in strain: NCTC 11638). SQ SEQUENCE 237 AA; 26618 MW; 3754B5858632CF12 CRC64; MPINPLYLFP NLFTASSIFL GMMSIFYASS YQFVMACWLV VASLILDGLD GRVARLTNTT SKFGIEFDSL ADVIAFGVAP SLIAYFYVGY NFGRIGMAVS ALFVIFGAIR LARFNISTNT SDPYSFIGIP IPAAAVLVVL CVLLDNKYHF LEGNTEKLFL SFIVLLGVLM VSNIRYPNFK KVKWNLKLFI LVLIFLSLVF VRPLEALSVF MGLYLIYGII RWLFLMVKII FNKNKSA // ID PSEB_HELPY Reviewed; 333 AA. AC O25511; DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 85. DE RecName: Full=UDP-N-acetylglucosamine 4,6-dehydratase (inverting); DE EC=4.2.1.115; DE AltName: Full=Pseudaminic acid biosynthesis protein B; DE AltName: Full=UDP-GlcNAc-inverting 4,6-dehydratase; GN Name=pseB; Synonyms=flaA1; OrderedLocusNames=HP_0840; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP BIOPHYSICOCHEMICAL PROPERTIES. RX PubMed=10954725; DOI=10.1074/jbc.M006369200; RA Creuzenet C., Schur M.J., Li J., Wakarchuk W.W., Lam J.S.; RT "FlaA1, a new bifunctional UDP-GlcNAc C6 Dehydratase/ C4 reductase RT from Helicobacter pylori."; RL J. Biol. Chem. 275:34873-34880(2000). RN [3] RP IDENTIFICATION. RX PubMed=12791140; DOI=10.1046/j.1365-2958.2003.03527.x; RA Schirm M., Soo E.C., Aubry A.J., Austin J., Thibault P., Logan S.M.; RT "Structural, genetic and functional characterization of the flagellin RT glycosylation process in Helicobacter pylori."; RL Mol. Microbiol. 48:1579-1592(2003). RN [4] RP PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16751642; DOI=10.1093/glycob/cwl010; RA Schoenhofen I.C., McNally D.J., Brisson J.R., Logan S.M.; RT "Elucidation of the CMP-pseudaminic acid pathway in Helicobacter RT pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic RT reaction."; RL Glycobiology 16:8C-14C(2006). RN [5] RP FUNCTION, AND CATALYTIC ACTIVITY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16286454; DOI=10.1074/jbc.M511021200; RA Schoenhofen I.C., McNally D.J., Vinogradov E., Whitfield D., RA Young N.M., Dick S., Wakarchuk W.W., Brisson J.R., Logan S.M.; RT "Functional characterization of dehydratase/aminotransferase pairs RT from Helicobacter and Campylobacter: enzymes distinguishing the RT pseudaminic acid and bacillosamine biosynthetic pathways."; RL J. Biol. Chem. 281:723-732(2006). RN [6] RP X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH NADP AND RP UDP-D-GALACTOPYRANOSE, COFACTOR, SUBUNIT, AND MUTAGENESIS OF LYS-133. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16651261; DOI=10.1074/jbc.M602393200; RA Ishiyama N., Creuzenet C., Miller W.L., Demendi M., Anderson E.M., RA Harauz G., Lam J.S., Berghuis A.M.; RT "Structural studies of FlaA1 from Helicobacter pylori reveal the RT mechanism for inverting 4,6-dehydratase activity."; RL J. Biol. Chem. 281:24489-24495(2006). CC -!- FUNCTION: Catalyzes the first step in the biosynthesis of CC pseudaminic acid, a sialic-acid-like sugar that is used to modify CC flagellin. Has both C6 dehydratase and C5 epimerase activities CC that result in the production of both UDP-2-acetamido-2,6-dideoxy- CC beta-L-arabino-4-hexulose and UDP-2-acetamido-2,6-dideoxy-alpha-D- CC xylo-4-hexulose. {ECO:0000269|PubMed:16286454}. CC -!- CATALYTIC ACTIVITY: UDP-N-acetyl-alpha-D-glucosamine = UDP-2- CC acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose + H(2)O. CC {ECO:0000269|PubMed:16286454}. CC -!- COFACTOR: CC Name=NADP(+); Xref=ChEBI:CHEBI:58349; CC Evidence={ECO:0000269|PubMed:16651261}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=159 uM for UDP-GlcNAc {ECO:0000269|PubMed:10954725}; CC -!- SUBUNIT: Homohexamer. {ECO:0000269|PubMed:16651261}. CC -!- SIMILARITY: Belongs to the polysaccharide synthase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07887.1; -; Genomic_DNA. DR PIR; H64624; H64624. DR RefSeq; NP_207633.1; NC_000915.1. DR RefSeq; WP_001132631.1; NC_000915.1. DR PDB; 2GN4; X-ray; 1.90 A; A/B=1-333. DR PDB; 2GN6; X-ray; 2.70 A; A/B=1-333. DR PDB; 2GN8; X-ray; 2.10 A; A/B=1-333. DR PDB; 2GN9; X-ray; 2.80 A; A/B=1-333. DR PDB; 2GNA; X-ray; 2.60 A; A/B=1-333. DR PDBsum; 2GN4; -. DR PDBsum; 2GN6; -. DR PDBsum; 2GN8; -. DR PDBsum; 2GN9; -. DR PDBsum; 2GNA; -. DR ProteinModelPortal; O25511; -. DR SMR; O25511; 5-333. DR IntAct; O25511; 1. DR STRING; 85962.HP0840; -. DR PaxDb; O25511; -. DR PRIDE; O25511; -. DR EnsemblBacteria; AAD07887; AAD07887; HP_0840. DR GeneID; 899369; -. DR KEGG; hpy:HP0840; -. DR PATRIC; 20592973; VBIHelPyl33062_0874. DR eggNOG; ENOG4105C5E; Bacteria. DR eggNOG; COG1086; LUCA. DR KO; K15894; -. DR OMA; ICIHAAA; -. DR OrthoDB; EOG6WQD59; -. DR BioCyc; HPY:HP0840-MONOMER; -. DR BioCyc; MetaCyc:MONOMER-14516; -. DR EvolutionaryTrace; O25511; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR003869; Polysac_CapD-like. DR InterPro; IPR020025; PseB. DR Pfam; PF02719; Polysacc_synt_2; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR03589; PseB; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Lyase; NADP; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 333 UDP-N-acetylglucosamine 4,6-dehydratase FT (inverting). FT /FTId=PRO_0000418954. FT NP_BIND 19 22 NADP. {ECO:0000269|PubMed:16651261}. FT NP_BIND 43 48 NADP. {ECO:0000269|PubMed:16651261}. FT NP_BIND 67 68 NADP. {ECO:0000269|PubMed:16651261}. FT NP_BIND 129 130 NADP. {ECO:0000269|PubMed:16651261}. FT NP_BIND 174 178 NADP. {ECO:0000269|PubMed:16651261}. FT ACT_SITE 133 133 {ECO:0000305}. FT BINDING 87 87 NADP; via carbonyl oxygen. FT {ECO:0000269|PubMed:16651261}. FT BINDING 91 91 NADP. {ECO:0000269|PubMed:16651261}. FT BINDING 91 91 Substrate. FT BINDING 141 141 NADP. {ECO:0000269|PubMed:16651261}. FT BINDING 145 145 NADP. {ECO:0000269|PubMed:16651261}. FT BINDING 173 173 Substrate. FT BINDING 181 181 Substrate; via amide nitrogen. FT BINDING 199 199 Substrate. FT BINDING 258 258 Substrate. FT BINDING 261 261 Substrate. FT MUTAGEN 133 133 K->A,E: Loss of activity. FT {ECO:0000269|PubMed:16651261}. FT TURN 7 10 {ECO:0000244|PDB:2GN4}. FT STRAND 12 16 {ECO:0000244|PDB:2GN4}. FT TURN 17 19 {ECO:0000244|PDB:2GN4}. FT HELIX 21 33 {ECO:0000244|PDB:2GN4}. FT STRAND 37 44 {ECO:0000244|PDB:2GN4}. FT HELIX 46 56 {ECO:0000244|PDB:2GN4}. FT STRAND 61 65 {ECO:0000244|PDB:2GN4}. FT HELIX 71 77 {ECO:0000244|PDB:2GN4}. FT TURN 78 80 {ECO:0000244|PDB:2GN4}. FT STRAND 82 86 {ECO:0000244|PDB:2GN4}. FT HELIX 93 98 {ECO:0000244|PDB:2GN4}. FT HELIX 100 120 {ECO:0000244|PDB:2GN4}. FT STRAND 124 129 {ECO:0000244|PDB:2GN4}. FT HELIX 132 134 {ECO:0000244|PDB:2GN4}. FT HELIX 140 154 {ECO:0000244|PDB:2GN4}. FT HELIX 155 157 {ECO:0000244|PDB:2GN4}. FT STRAND 160 162 {ECO:0000244|PDB:2GNA}. FT STRAND 165 169 {ECO:0000244|PDB:2GN4}. FT HELIX 181 191 {ECO:0000244|PDB:2GN4}. FT STRAND 196 199 {ECO:0000244|PDB:2GN4}. FT STRAND 204 208 {ECO:0000244|PDB:2GN4}. FT HELIX 210 223 {ECO:0000244|PDB:2GN4}. FT STRAND 229 232 {ECO:0000244|PDB:2GN4}. FT STRAND 236 238 {ECO:0000244|PDB:2GN4}. FT HELIX 239 246 {ECO:0000244|PDB:2GN4}. FT STRAND 252 254 {ECO:0000244|PDB:2GN4}. FT STRAND 266 268 {ECO:0000244|PDB:2GN4}. FT HELIX 270 275 {ECO:0000244|PDB:2GN4}. FT STRAND 276 278 {ECO:0000244|PDB:2GN4}. FT STRAND 280 285 {ECO:0000244|PDB:2GN4}. FT STRAND 315 319 {ECO:0000244|PDB:2GN4}. FT HELIX 326 330 {ECO:0000244|PDB:2GN4}. SQ SEQUENCE 333 AA; 37354 MW; 8EF0A39F0FBF0516 CRC64; MPNHQNMLDN QTILITGGTG SFGKCFVRKV LDTTNAKKII VYSRDELKQS EMAMEFNDPR MRFFIGDVRD LERLNYALEG VDICIHAAAL KHVPIAEYNP LECIKTNIMG ASNVINACLK NAISQVIALS TDKAANPINL YGATKLCSDK LFVSANNFKG SSQTQFSVVR YGNVVGSRGS VVPFFKKLVQ NKASEIPITD IRMTRFWITL DEGVSFVLKS LKRMHGGEIF VPKIPSMKMT DLAKALAPNT PTKIIGIRPG EKLHEVMIPK DESHLALEFE DFFIIQPTIS FQTPKDYTLT KLHEKGQKVA PDFEYSSHNN NQWLEPDDLL KLL // ID PSEI_HELPY Reviewed; 340 AA. AC O24980; DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 76. DE RecName: Full=Pseudaminic acid synthase; DE EC=2.5.1.97; DE AltName: Full=Pseudaminic acid biosynthesis protein I; GN Name=pseI; OrderedLocusNames=HP_0178; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION. RX PubMed=12791140; DOI=10.1046/j.1365-2958.2003.03527.x; RA Schirm M., Soo E.C., Aubry A.J., Austin J., Thibault P., Logan S.M.; RT "Structural, genetic and functional characterization of the flagellin RT glycosylation process in Helicobacter pylori."; RL Mol. Microbiol. 48:1579-1592(2003). RN [3] RP PATHWAY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16751642; DOI=10.1093/glycob/cwl010; RA Schoenhofen I.C., McNally D.J., Brisson J.R., Logan S.M.; RT "Elucidation of the CMP-pseudaminic acid pathway in Helicobacter RT pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic RT reaction."; RL Glycobiology 16:8C-14C(2006). CC -!- FUNCTION: Catalyzes the fifth step in the biosynthesis of CC pseudaminic acid, a sialic-acid-like sugar that is used to modify CC flagellin. Catalyzes the condensation of phosphoenolpyruvate with CC 2,4-diacetamido-2,4,6-trideoxy-beta-l-altropyranose, forming CC pseudaminic acid (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Phosphoenolpyruvate + 2,4-bis(acetylamino)- CC 2,4,6-trideoxy-beta-L-altropyranose + H(2)O = 5,7- CC bis(acetylamino)-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-2- CC nonulopyranosonic acid + phosphate. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000250}; CC -!- SIMILARITY: Belongs to the pseudaminic acid synthase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 AFP-like domain. {ECO:0000255|PROSITE- CC ProRule:PRU00021}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07248.1; -; Genomic_DNA. DR PIR; B64542; B64542. DR RefSeq; NP_206977.1; NC_000915.1. DR RefSeq; WP_000941291.1; NC_018939.1. DR ProteinModelPortal; O24980; -. DR DIP; DIP-3369N; -. DR IntAct; O24980; 6. DR MINT; MINT-165751; -. DR STRING; 85962.HP0178; -. DR PaxDb; O24980; -. DR PRIDE; O24980; -. DR EnsemblBacteria; AAD07248; AAD07248; HP_0178. DR GeneID; 899992; -. DR KEGG; heo:C694_00885; -. DR KEGG; hpy:HP0178; -. DR PATRIC; 20591579; VBIHelPyl33062_0189. DR eggNOG; ENOG4105D2T; Bacteria. DR eggNOG; COG2089; LUCA. DR KO; K15898; -. DR OMA; AYPSKIE; -. DR OrthoDB; EOG6WX4KP; -. DR BioCyc; HPY:HP0178-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR Gene3D; 3.90.1210.10; -; 1. DR InterPro; IPR006190; AFP_Neu5c_C. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR013132; Neu5Ac_N. DR InterPro; IPR020030; Pseudaminic_synth_PseI. DR InterPro; IPR013974; SAF. DR Pfam; PF03102; NeuB; 1. DR Pfam; PF08666; SAF; 1. DR SMART; SM00858; SAF; 1. DR SUPFAM; SSF51269; SSF51269; 1. DR TIGRFAMs; TIGR03586; PseI; 1. DR PROSITE; PS50844; AFP_LIKE; 1. PE 3: Inferred from homology; KW Complete proteome; Metal-binding; Reference proteome; Transferase. FT CHAIN 1 340 Pseudaminic acid synthase. FT /FTId=PRO_0000418933. FT DOMAIN 281 337 AFP-like. {ECO:0000255|PROSITE- FT ProRule:PRU00021}. SQ SEQUENCE 340 AA; 38007 MW; E2880092AFAC77F7 CRC64; MLQPPKIVAE LSANHNQDLN LAKESLHAIK ESGADFVKLQ TYTPSCMTLN SKEDPFIIQG TLWDKENLYE LYQKASTPLE WHAELFELAR KLDLGIFSSP FSSQALELLE SLNCPMYKIA SFEIVDLDLI EKAARTQKPI ILSSGIATHT ELQDAISLCR RVNNFDITLL KCVSAYPSKI EDANLLSMVK LGEIFGVKFG LSDHTIGSLC PILATTLGAS MIEKHFILNK SLQTPDSAFS MDFNGFKSMV EAIKQSVLAL GEEEPRINPK TLEKRRFFAR SLFVIKDIQK GEALTENNIK ALRPNLGLHP KFYKEILGQK ASKFLKANTP LSADDIERSL // ID PUR2_HELPY Reviewed; 424 AA. AC O25817; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 102. DE RecName: Full=Phosphoribosylamine--glycine ligase; DE EC=6.3.4.13; DE AltName: Full=GARS; DE AltName: Full=Glycinamide ribonucleotide synthetase; DE AltName: Full=Phosphoribosylglycinamide synthetase; GN Name=purD; OrderedLocusNames=HP_1218; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + 5-phospho-D-ribosylamine + glycine = ADP CC + phosphate + N(1)-(5-phospho-D-ribosyl)glycinamide. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D- CC ribose 1-diphosphate: step 2/2. CC -!- SIMILARITY: Belongs to the GARS family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 ATP-grasp domain. {ECO:0000255|PROSITE- CC ProRule:PRU00409}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08261.1; -; Genomic_DNA. DR PIR; B64672; B64672. DR RefSeq; NP_208010.1; NC_000915.1. DR RefSeq; WP_000654350.1; NC_018939.1. DR ProteinModelPortal; O25817; -. DR DIP; DIP-3667N; -. DR IntAct; O25817; 3. DR MINT; MINT-179697; -. DR STRING; 85962.HP1218; -. DR PaxDb; O25817; -. DR PRIDE; O25817; -. DR EnsemblBacteria; AAD08261; AAD08261; HP_1218. DR GeneID; 898842; -. DR KEGG; heo:C694_06295; -. DR KEGG; hpy:HP1218; -. DR PATRIC; 20593809; VBIHelPyl33062_1275. DR eggNOG; ENOG4105C12; Bacteria. DR eggNOG; COG0151; LUCA. DR KO; K01945; -. DR OMA; ENLECEH; -. DR OrthoDB; EOG69SKD1; -. DR BioCyc; HPY:HP1218-MONOMER; -. DR UniPathway; UPA00074; UER00125. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0004637; F:phosphoribosylamine-glycine ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009113; P:purine nucleobase biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR Gene3D; 3.90.600.10; -; 1. DR HAMAP; MF_00138; GARS; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR020561; PRibGlycinamid_synth_ATP-grasp. DR InterPro; IPR000115; PRibGlycinamide_synth. DR InterPro; IPR020560; PRibGlycinamide_synth_C-dom. DR InterPro; IPR020562; PRibGlycinamide_synth_N. DR InterPro; IPR011054; Rudment_hybrid_motif. DR Pfam; PF01071; GARS_A; 1. DR Pfam; PF02843; GARS_C; 1. DR Pfam; PF02844; GARS_N; 1. DR SMART; SM01210; GARS_C; 1. DR SUPFAM; SSF51246; SSF51246; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR00877; purD; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Nucleotide-binding; KW Purine biosynthesis; Reference proteome. FT CHAIN 1 424 Phosphoribosylamine--glycine ligase. FT /FTId=PRO_0000151453. FT DOMAIN 111 312 ATP-grasp. {ECO:0000255|PROSITE- FT ProRule:PRU00409}. FT NP_BIND 137 189 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00409}. SQ SEQUENCE 424 AA; 47504 MW; F093B63E7DCCCCC2 CRC64; MKDNNNYNVL IVGNKGREYA LAQRLQQDER VNALYFCLGN GGTQDLGENL ECEHYEHIVE LALKKQIHLA IISEEEFLVL GLTEMLEKAG ILVFGASKEA AKLEASKSYM KAFVKECGIK SASYFETNDL KEALSYIQNA SFPLVIKALN KNTSIVYQEE EAIKILEDAF KQSNEPVIIE PFLEGFELSV TALIANDDFI LLPFCQNYKR LLEGDNGVNT GGMGAIAPAN FFSNELEEKI KNHIFKPTLE KLQADNTPFK GVLLAEIVII EEKGVLEPYL LDFSVRFKDI ECQTILPLLE SSLLDLCLAT AKGELHSLEL VFSKEFVMSV ALVSRNYPTS SSPKQTLYID PVDEKKGHLI LGEVEQDNGV FESSGGRVIF AIGRGKSLLE ARNHAYEIAQ KVHFEGMFYR KDIGFKVLDL KEYS // ID PTH_HELPY Reviewed; 186 AA. AC P56077; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; DE Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083}; DE EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083}; GN Name=pth {ECO:0000255|HAMAP-Rule:MF_00083}; OrderedLocusNames=HP_1497; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The natural substrate for this enzyme may be peptidyl- CC tRNAs which drop off the ribosome during protein synthesis. CC {ECO:0000255|HAMAP-Rule:MF_00083}. CC -!- CATALYTIC ACTIVITY: N-substituted aminoacyl-tRNA + H(2)O = N- CC substituted amino acid + tRNA. {ECO:0000255|HAMAP-Rule:MF_00083}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00083}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00083}. CC -!- SIMILARITY: Belongs to the PTH family. {ECO:0000255|HAMAP- CC Rule:MF_00083}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08538.1; -; Genomic_DNA. DR PIR; A64707; A64707. DR RefSeq; NP_208288.1; NC_000915.1. DR RefSeq; WP_000173978.1; NC_018939.1. DR ProteinModelPortal; P56077; -. DR DIP; DIP-3642N; -. DR IntAct; P56077; 2. DR MINT; MINT-184242; -. DR STRING; 85962.HP1497; -. DR PaxDb; P56077; -. DR PRIDE; P56077; -. DR EnsemblBacteria; AAD08538; AAD08538; HP_1497. DR GeneID; 899794; -. DR KEGG; heo:C694_07755; -. DR KEGG; hpy:HP1497; -. DR PATRIC; 20594405; VBIHelPyl33062_1571. DR eggNOG; ENOG4108ZPD; Bacteria. DR eggNOG; COG0193; LUCA. DR KO; K01056; -. DR OMA; FSPKHNA; -. DR OrthoDB; EOG6C5RTR; -. DR BioCyc; HPY:HP1497-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004045; F:aminoacyl-tRNA hydrolase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1470; -; 1. DR HAMAP; MF_00083; Pept_tRNA_hydro_bact; 1. DR InterPro; IPR001328; Pept_tRNA_hydro. DR InterPro; IPR018171; Pept_tRNA_hydro_CS. DR PANTHER; PTHR17224; PTHR17224; 1. DR Pfam; PF01195; Pept_tRNA_hydro; 1. DR SUPFAM; SSF53178; SSF53178; 1. DR TIGRFAMs; TIGR00447; pth; 1. DR PROSITE; PS01195; PEPT_TRNA_HYDROL_1; 1. DR PROSITE; PS01196; PEPT_TRNA_HYDROL_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Hydrolase; Reference proteome. FT CHAIN 1 186 Peptidyl-tRNA hydrolase. FT /FTId=PRO_0000187749. SQ SEQUENCE 186 AA; 20959 MW; 38DB12138534214D CRC64; MTLLVGLGNP TLRYAHTRHN AGFDILDSLV SELDLSFTFS PKHNAFLCVY KDFIFLKPQT YMNLSGESVL SAKNFYKTKE LLIVHDDLDL PLGVVRFKNG GGNGGHNGLK SIDLLCSNSY YRLRVGISKG IGVIEHVLSK FHKNEEPLKN AAFEHAKNAL KFFIESHDFN AMQNRFTLKK PLKIES // ID PURA_HELPY Reviewed; 411 AA. AC P56137; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 13-APR-2016, entry version 110. DE RecName: Full=Adenylosuccinate synthetase {ECO:0000255|HAMAP-Rule:MF_00011}; DE Short=AMPSase {ECO:0000255|HAMAP-Rule:MF_00011}; DE Short=AdSS {ECO:0000255|HAMAP-Rule:MF_00011}; DE EC=6.3.4.4 {ECO:0000255|HAMAP-Rule:MF_00011}; DE AltName: Full=IMP--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00011}; GN Name=purA {ECO:0000255|HAMAP-Rule:MF_00011}; GN OrderedLocusNames=HP_0255; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Plays an important role in the de novo pathway of purine CC nucleotide biosynthesis. Catalyzes the first committed step in the CC biosynthesis of AMP from IMP. {ECO:0000255|HAMAP-Rule:MF_00011}. CC -!- CATALYTIC ACTIVITY: GTP + IMP + L-aspartate = GDP + phosphate + CC N(6)-(1,2-dicarboxyethyl)-AMP. {ECO:0000255|HAMAP-Rule:MF_00011}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00011}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00011}; CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via de novo pathway; CC AMP from IMP: step 1/2. {ECO:0000255|HAMAP-Rule:MF_00011}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00011}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00011}. CC -!- SIMILARITY: Belongs to the adenylosuccinate synthetase family. CC {ECO:0000255|HAMAP-Rule:MF_00011}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07324.1; -; Genomic_DNA. DR PIR; G64551; G64551. DR RefSeq; NP_207053.1; NC_000915.1. DR RefSeq; WP_000796173.1; NC_018939.1. DR ProteinModelPortal; P56137; -. DR DIP; DIP-3533N; -. DR IntAct; P56137; 1. DR MINT; MINT-161396; -. DR STRING; 85962.HP0255; -. DR PaxDb; P56137; -. DR PRIDE; P56137; -. DR EnsemblBacteria; AAD07324; AAD07324; HP_0255. DR GeneID; 900195; -. DR KEGG; heo:C694_01290; -. DR KEGG; hpy:HP0255; -. DR PATRIC; 20591737; VBIHelPyl33062_0266. DR eggNOG; ENOG4105C91; Bacteria. DR eggNOG; COG0104; LUCA. DR KO; K01939; -. DR OMA; FHHAKPI; -. DR OrthoDB; EOG68Q0QG; -. DR BioCyc; HPY:HP0255-MONOMER; -. DR UniPathway; UPA00075; UER00335. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004019; F:adenylosuccinate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0044208; P:'de novo' AMP biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00011; Adenylosucc_synth; 1. DR InterPro; IPR018220; Adenylosuccin_syn_GTP-bd. DR InterPro; IPR033128; Adenylosuccin_syn_Lys_AS. DR InterPro; IPR001114; Adenylosuccinate_synthetase. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11846; PTHR11846; 1. DR Pfam; PF00709; Adenylsucc_synt; 1. DR SMART; SM00788; Adenylsucc_synt; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00184; purA; 1. DR PROSITE; PS01266; ADENYLOSUCCIN_SYN_1; 1. DR PROSITE; PS00513; ADENYLOSUCCIN_SYN_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Ligase; Magnesium; KW Metal-binding; Nucleotide-binding; Purine biosynthesis; KW Reference proteome. FT CHAIN 1 411 Adenylosuccinate synthetase. FT /FTId=PRO_0000095186. FT NP_BIND 11 17 GTP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT NP_BIND 39 41 GTP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT NP_BIND 322 324 GTP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT NP_BIND 400 402 GTP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT REGION 12 15 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT REGION 37 40 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT REGION 290 296 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT ACT_SITE 12 12 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT ACT_SITE 40 40 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT METAL 12 12 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00011}. FT METAL 39 39 Magnesium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 121 121 IMP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 135 135 IMP; shared with dimeric partner. FT {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 215 215 IMP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 230 230 IMP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 294 294 IMP. {ECO:0000255|HAMAP-Rule:MF_00011}. FT BINDING 296 296 GTP. {ECO:0000255|HAMAP-Rule:MF_00011}. SQ SEQUENCE 411 AA; 45743 MW; 7E9D1FCB6A035FB7 CRC64; MADVVVGIQW GDEGKGKIVD RIAKDYDFVV RYQGGHNAGH TIVHKGVKHS LHLMPSGVLY PKCKNIISSA VVVSVKDLCE EISAFEDLEN RLFVSDRAHV ILPYHAKKDA FKEKSQNIGT TKKGIGPCYE DKMARSGIRM GDLLDDKILE EKLNAHFKAI EPFKKAYDLG ENYEKDLMGY FKTYAPKICP FIKDTTSMLI EANQKGEKIL LEGAQGTLLD IDLGTYPFVT SSNTTSASAC VSTGLNPKAI NEVIGITKAY STRVGNGPFP SEDTTPMGDH LRTKGAEFGT TTKRPRRCGW LDLVALKYAC ALNGCTQLAL MKLDVLDGID AIKVCVAYER KGERLEIFPS DLKDCVPIYQ TFKGWEKSVG VRKLDDLEPN VREYIRFIEK EVGVKIRLIS TSPEREDTIF L // ID PYRX_HELPY Reviewed; 378 AA. AC O25045; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Probable dihydroorotase-like protein; DE AltName: Full=Aspartate carbamoyltransferase 42 kDa non-catalytic chain; GN Name=pyrC'; OrderedLocusNames=HP_0266; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Non-functional DHOase. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the DHOase family. PyrC' subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07332.1; -; Genomic_DNA. DR PIR; B64553; B64553. DR RefSeq; NP_207064.1; NC_000915.1. DR RefSeq; WP_000924910.1; NC_018939.1. DR ProteinModelPortal; O25045; -. DR IntAct; O25045; 1. DR STRING; 85962.HP0266; -. DR PaxDb; O25045; -. DR PRIDE; O25045; -. DR DNASU; 899074; -. DR EnsemblBacteria; AAD07332; AAD07332; HP_0266. DR GeneID; 899074; -. DR KEGG; heo:C694_01345; -. DR KEGG; hpy:HP0266; -. DR PATRIC; 20591759; VBIHelPyl33062_0277. DR eggNOG; ENOG4105CD3; Bacteria. DR eggNOG; COG0044; LUCA. DR KO; K01465; -. DR OMA; KENQLAN; -. DR OrthoDB; EOG6KHFW6; -. DR BioCyc; HPY:HP0266-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0006221; P:pyrimidine nucleotide biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 2.30.40.10; -; 1. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR Pfam; PF01979; Amidohydro_1; 1. DR SUPFAM; SSF51338; SSF51338; 2. DR SUPFAM; SSF51556; SSF51556; 1. PE 3: Inferred from homology; KW Complete proteome; Pyrimidine biosynthesis; Reference proteome. FT CHAIN 1 378 Probable dihydroorotase-like protein. FT /FTId=PRO_0000147287. SQ SEQUENCE 378 AA; 42362 MW; E4691ECC0E0659F0 CRC64; MLLKNASFYD DEVLKRADIR LKDSLITEIK ENLSPINNEE VIECRDLFVL PSFIDLSVTG LEGYENLKQK AFKGGVGLLN VFNCDQSGIK NIMAIKNNQL ADIATLKNKG GEILIAPSDA FLELISHYAK SYNLPLLISL ENSFEALNSG ELAYELGQNF VENAFENTRL VRFMEVSRAL QIPVLLDKVN SITTLKLIKA FNDLGAKLQA QTPLSHLVLD ESVYEDYEPR FKIAPPLRDK ESQNALKEAL KNNEIAMLTS LHASKNSNAQ LFEESAFGCE SIEDAFSVAY TFLVQKKVIS FQQLIKVMAI NQAKFLKLNA GEVKENQLAN LMIVDLNAQT RVSNQNSPFY GLELYGEVQR MILKGQTTFI KENACKKS // ID PYRF_HELPY Reviewed; 227 AA. AC P56155; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Orotidine 5'-phosphate decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; DE EC=4.1.1.23 {ECO:0000255|HAMAP-Rule:MF_01200}; DE AltName: Full=OMP decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; DE Short=OMPDCase {ECO:0000255|HAMAP-Rule:MF_01200}; DE Short=OMPdecase {ECO:0000255|HAMAP-Rule:MF_01200}; GN Name=pyrF {ECO:0000255|HAMAP-Rule:MF_01200}; GN OrderedLocusNames=HP_0005; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the decarboxylation of orotidine 5'- CC monophosphate (OMP) to uridine 5'-monophosphate (UMP). CC {ECO:0000255|HAMAP-Rule:MF_01200}. CC -!- CATALYTIC ACTIVITY: Orotidine 5'-phosphate = UMP + CO(2). CC {ECO:0000255|HAMAP-Rule:MF_01200}. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; UMP from orotate: step 2/2. {ECO:0000255|HAMAP- CC Rule:MF_01200}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01200}. CC -!- SIMILARITY: Belongs to the OMP decarboxylase family. Type 1 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07078.1; -; Genomic_DNA. DR PIR; E64520; E64520. DR RefSeq; NP_206807.1; NC_000915.1. DR RefSeq; WP_001175296.1; NC_018939.1. DR ProteinModelPortal; P56155; -. DR DIP; DIP-3056N; -. DR IntAct; P56155; 16. DR MINT; MINT-163476; -. DR STRING; 85962.HP0005; -. DR PaxDb; P56155; -. DR PRIDE; P56155; -. DR EnsemblBacteria; AAD07078; AAD07078; HP_0005. DR GeneID; 898802; -. DR KEGG; heo:C694_00025; -. DR KEGG; hpy:HP0005; -. DR PATRIC; 20591197; VBIHelPyl33062_0005. DR eggNOG; ENOG4106EG9; Bacteria. DR eggNOG; COG0284; LUCA. DR KO; K01591; -. DR OMA; NFKIFLD; -. DR OrthoDB; EOG6N6815; -. DR BioCyc; HPY:HP0005-MONOMER; -. DR UniPathway; UPA00070; UER00120. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004590; F:orotidine-5'-phosphate decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01200_B; OMPdecase_type1_B; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR014732; OMPdecase. DR InterPro; IPR018089; OMPdecase_AS. DR InterPro; IPR001754; OMPdeCOase_dom. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00215; OMPdecase; 1. DR SMART; SM00934; OMPdecase; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR01740; pyrF; 1. DR PROSITE; PS00156; OMPDECASE; 1. PE 3: Inferred from homology; KW Complete proteome; Decarboxylase; Lyase; Pyrimidine biosynthesis; KW Reference proteome. FT CHAIN 1 227 Orotidine 5'-phosphate decarboxylase. FT /FTId=PRO_0000134547. FT REGION 59 68 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT ACT_SITE 61 61 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 8 8 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 30 30 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 118 118 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 178 178 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 187 187 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. FT BINDING 207 207 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01200}. FT BINDING 208 208 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01200}. SQ SEQUENCE 227 AA; 25384 MW; B798A52AD593013F CRC64; MQLCVALDLE KKEDNLSLLQ ELKGLDLWAK VGLRSFIRDG AVFLDEIRKI DENFKIFLDL KLYDIPYTMA NAALECAKLD IDMLTVHLSS AKSALTALMQ RLNALKKRPL IMGVSALTSF SEEEFLMVYN APLKTQAIKL SAMGKESGID GVVCSVFESL AIKEALGKDF LTLTPGIRLD QNDKEDQERV ANAKEAKQNL SDFIVVGRPI YQAKEPREVV LELLKDC // ID PYRH_HELPY Reviewed; 240 AA. AC P56106; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Uridylate kinase {ECO:0000255|HAMAP-Rule:MF_01220}; DE Short=UK {ECO:0000255|HAMAP-Rule:MF_01220}; DE EC=2.7.4.22 {ECO:0000255|HAMAP-Rule:MF_01220}; DE AltName: Full=Uridine monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_01220}; DE Short=UMP kinase {ECO:0000255|HAMAP-Rule:MF_01220}; DE Short=UMPK {ECO:0000255|HAMAP-Rule:MF_01220}; GN Name=pyrH {ECO:0000255|HAMAP-Rule:MF_01220}; GN OrderedLocusNames=HP_0777; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible phosphorylation of UMP to UDP. CC {ECO:0000255|HAMAP-Rule:MF_01220}. CC -!- CATALYTIC ACTIVITY: ATP + UMP = ADP + UDP. {ECO:0000255|HAMAP- CC Rule:MF_01220}. CC -!- ENZYME REGULATION: Inhibited by UTP. {ECO:0000255|HAMAP- CC Rule:MF_01220}. CC -!- PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo CC pathway; UDP from UMP (UMPK route): step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_01220}. CC -!- SUBUNIT: Homohexamer. {ECO:0000255|HAMAP-Rule:MF_01220}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01220}. CC -!- SIMILARITY: Belongs to the UMP kinase family. {ECO:0000255|HAMAP- CC Rule:MF_01220}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07823.1; -; Genomic_DNA. DR PIR; A64617; A64617. DR RefSeq; NP_207570.1; NC_000915.1. DR RefSeq; WP_001148056.1; NC_018939.1. DR PDB; 4A7W; X-ray; 1.80 A; A/B=1-240. DR PDB; 4A7X; X-ray; 2.49 A; A/B/C/D/E/F=1-240. DR PDBsum; 4A7W; -. DR PDBsum; 4A7X; -. DR ProteinModelPortal; P56106; -. DR IntAct; P56106; 3. DR STRING; 85962.HP0777; -. DR PaxDb; P56106; -. DR PRIDE; P56106; -. DR DNASU; 900266; -. DR EnsemblBacteria; AAD07823; AAD07823; HP_0777. DR GeneID; 900266; -. DR KEGG; heo:C694_03990; -. DR KEGG; hpy:HP0777; -. DR PATRIC; 20592843; VBIHelPyl33062_0810. DR eggNOG; ENOG4105C41; Bacteria. DR eggNOG; COG0528; LUCA. DR KO; K09903; -. DR OMA; IIVFDMN; -. DR OrthoDB; EOG6M0T8S; -. DR BioCyc; HPY:HP0777-MONOMER; -. DR BRENDA; 2.7.4.22; 2604. DR UniPathway; UPA00159; UER00275. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0033862; F:UMP kinase activity; IEA:UniProtKB-EC. DR GO; GO:0044210; P:'de novo' CTP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1160.10; -; 1. DR HAMAP; MF_01220_B; PyrH_B; 1. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR InterPro; IPR011817; Uridylate_kinase. DR InterPro; IPR015963; Uridylate_kinase_bac. DR PANTHER; PTHR21499:SF23; PTHR21499:SF23; 1. DR Pfam; PF00696; AA_kinase; 1. DR PIRSF; PIRSF005650; Uridylate_kin; 1. DR SUPFAM; SSF53633; SSF53633; 1. DR TIGRFAMs; TIGR02075; pyrH_bact; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Complete proteome; Cytoplasm; Kinase; KW Nucleotide-binding; Pyrimidine biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 240 Uridylate kinase. FT /FTId=PRO_0000143848. FT NP_BIND 13 16 ATP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT NP_BIND 137 144 UMP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 55 55 UMP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 56 56 ATP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 60 60 ATP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 76 76 UMP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 164 164 ATP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT BINDING 170 170 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_01220}. FT BINDING 173 173 ATP. {ECO:0000255|HAMAP-Rule:MF_01220}. FT STRAND 9 14 {ECO:0000244|PDB:4A7W}. FT HELIX 16 20 {ECO:0000244|PDB:4A7W}. FT STRAND 23 26 {ECO:0000244|PDB:4A7W}. FT HELIX 29 44 {ECO:0000244|PDB:4A7W}. FT STRAND 48 53 {ECO:0000244|PDB:4A7W}. FT TURN 56 58 {ECO:0000244|PDB:4A7W}. FT HELIX 61 64 {ECO:0000244|PDB:4A7X}. FT STRAND 68 70 {ECO:0000244|PDB:4A7X}. FT HELIX 72 96 {ECO:0000244|PDB:4A7W}. FT STRAND 101 107 {ECO:0000244|PDB:4A7W}. FT TURN 110 112 {ECO:0000244|PDB:4A7W}. FT STRAND 113 115 {ECO:0000244|PDB:4A7W}. FT HELIX 118 126 {ECO:0000244|PDB:4A7W}. FT STRAND 130 135 {ECO:0000244|PDB:4A7W}. FT HELIX 144 154 {ECO:0000244|PDB:4A7W}. FT STRAND 158 172 {ECO:0000244|PDB:4A7W}. FT TURN 174 176 {ECO:0000244|PDB:4A7W}. FT STRAND 182 187 {ECO:0000244|PDB:4A7W}. FT HELIX 188 193 {ECO:0000244|PDB:4A7W}. FT HELIX 201 209 {ECO:0000244|PDB:4A7W}. FT STRAND 214 221 {ECO:0000244|PDB:4A7W}. FT HELIX 224 231 {ECO:0000244|PDB:4A7W}. FT STRAND 237 240 {ECO:0000244|PDB:4A7W}. SQ SEQUENCE 240 AA; 26172 MW; F978BAD5BBCA5828 CRC64; MQAKIKNKRV LVKFSGEALA GDNQFGIDIH VLDHIAKEIK SLVENDIEVG IVIGGGNIIR GVSAAQGGII RRTSGDYMGM LATVINAVAM QEALEHIGLD TRVQSAIEIK EICESYIYRK AIRHLEKGRV VIFGAGTGNP FFTTDTAATL RAIEIGSDLI IKATKVDGIY DKDPNKFKDA KKLDTLSYND ALIGDIEVMD DTAISLAKDN KLPIVVCNMF KKGNLLQVIK HQQGVFSMVK // ID QUEF_HELPY Reviewed; 148 AA. AC O25959; DT 22-NOV-2005, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 104. DE RecName: Full=NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; DE EC=1.7.1.13 {ECO:0000255|HAMAP-Rule:MF_00818}; DE AltName: Full=7-cyano-7-carbaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; DE AltName: Full=NADPH-dependent nitrile oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00818}; DE AltName: Full=PreQ(0) reductase {ECO:0000255|HAMAP-Rule:MF_00818}; GN Name=queF {ECO:0000255|HAMAP-Rule:MF_00818}; GN OrderedLocusNames=HP_1413; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the NADPH-dependent reduction of 7-cyano-7- CC deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). CC {ECO:0000255|HAMAP-Rule:MF_00818}. CC -!- CATALYTIC ACTIVITY: 7-aminomethyl-7-carbaguanine + 2 NADP(+) = 7- CC cyano-7-carbaguanine + 2 NADPH. {ECO:0000255|HAMAP-Rule:MF_00818}. CC -!- PATHWAY: tRNA modification; tRNA-queuosine biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00818}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00818}. CC -!- SIMILARITY: Belongs to the GTP cyclohydrolase I family. QueF type CC 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_00818}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08456.1; -; Genomic_DNA. DR PIR; E64696; E64696. DR RefSeq; NP_208204.1; NC_000915.1. DR RefSeq; WP_000187118.1; NC_018939.1. DR ProteinModelPortal; O25959; -. DR DIP; DIP-3728N; -. DR IntAct; O25959; 2. DR MINT; MINT-170725; -. DR STRING; 85962.HP1413; -. DR PaxDb; O25959; -. DR PRIDE; O25959; -. DR EnsemblBacteria; AAD08456; AAD08456; HP_1413. DR GeneID; 899881; -. DR KEGG; heo:C694_07305; -. DR KEGG; hpy:HP1413; -. DR PATRIC; 20594223; VBIHelPyl33062_1481. DR eggNOG; ENOG4105CSD; Bacteria. DR eggNOG; COG0780; LUCA. DR KO; K09457; -. DR OMA; LITLECK; -. DR OrthoDB; EOG6D5G0M; -. DR BioCyc; HPY:HP1413-MONOMER; -. DR UniPathway; UPA00392; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0046857; F:oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0033739; F:preQ1 synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00818; QueF_type1; 1. DR InterPro; IPR029500; QueF. DR InterPro; IPR016856; QueF_type1. DR Pfam; PF14489; QueF; 1. DR PIRSF; PIRSF027377; Nitrile_oxidored_QueF; 1. DR TIGRFAMs; TIGR03139; QueF-II; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; NADP; Oxidoreductase; KW Queuosine biosynthesis; Reference proteome. FT CHAIN 1 148 NADPH-dependent 7-cyano-7-deazaguanine FT reductase. FT /FTId=PRO_0000162975. FT REGION 72 74 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00818}. FT REGION 91 92 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00818}. FT ACT_SITE 50 50 Thioimide intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00818}. FT ACT_SITE 57 57 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00818}. SQ SEQUENCE 148 AA; 17092 MW; 43943A187157F104 CRC64; MTPELNLKSL GAKTPYIFEY NSQLLEAFPN PNPNLDPLIT LECKEFTSLC PITSQPDFGV IFIRYIPKDK MVESKSLKLY LFSYRNHGSF HESCINTILL DLVRLLEPKY LEVYGDFASR GGIAIKPFVN YAIKEYQDFK EKRLLNAK // ID PYRB_HELPY Reviewed; 307 AA. AC O25716; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Aspartate carbamoyltransferase; DE EC=2.1.3.2; DE AltName: Full=Aspartate transcarbamylase; DE Short=ATCase; GN Name=pyrB; OrderedLocusNames=HP_1084; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Carbamoyl phosphate + L-aspartate = phosphate CC + N-carbamoyl-L-aspartate. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 2/3. CC -!- SIMILARITY: Belongs to the ATCase/OTCase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08128.1; -; Genomic_DNA. DR PIR; D64655; D64655. DR RefSeq; NP_207875.1; NC_000915.1. DR RefSeq; WP_001124546.1; NC_018939.1. DR ProteinModelPortal; O25716; -. DR DIP; DIP-3378N; -. DR IntAct; O25716; 3. DR MINT; MINT-169791; -. DR STRING; 85962.HP1084; -. DR PaxDb; O25716; -. DR PRIDE; O25716; -. DR EnsemblBacteria; AAD08128; AAD08128; HP_1084. DR GeneID; 899620; -. DR KEGG; heo:C694_05600; -. DR KEGG; hpy:HP1084; -. DR PATRIC; 20593507; VBIHelPyl33062_1133. DR eggNOG; ENOG4105CXT; Bacteria. DR eggNOG; COG0540; LUCA. DR KO; K00609; -. DR OMA; KMHNKII; -. DR OrthoDB; EOG61KBJZ; -. DR BioCyc; HPY:HP1084-MONOMER; -. DR UniPathway; UPA00070; UER00116. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004070; F:aspartate carbamoyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1370; -; 2. DR HAMAP; MF_00001; Asp_carb_tr; 1. DR InterPro; IPR006132; Asp/Orn_carbamoyltranf_P-bd. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR002082; Asp_carbamoyltransf. DR InterPro; IPR006131; Asp_carbamoyltransf_Asp/Orn-bd. DR Pfam; PF00185; OTCace; 1. DR Pfam; PF02729; OTCace_N; 1. DR PRINTS; PR00100; AOTCASE. DR PRINTS; PR00101; ATCASE. DR SUPFAM; SSF53671; SSF53671; 1. DR TIGRFAMs; TIGR00670; asp_carb_tr; 1. DR PROSITE; PS00097; CARBAMOYLTRANSFERASE; 1. PE 3: Inferred from homology; KW Complete proteome; Pyrimidine biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 307 Aspartate carbamoyltransferase. FT /FTId=PRO_0000113141. SQ SEQUENCE 307 AA; 34068 MW; B77C515883A45074 CRC64; MPKKCRHLLQ TSDLSLDEIK LLLEKASVYA NDFNAVSLET KEKMHNKIIV ALFFENSTRT VSSFEIASLR LGAKIVKLNM QTSSASKGET LTDTFKNIHA MQPDAIITRH AFSSAPFKLA EFSQCPLINA GSGVSAHPTQ ALLDLLTLYQ HFGSLENLKG KKIAFIGDVK NSRVANSNIK LLQRLGLEIM LCAPSSMLPS VSLKTTHNVE EAIAFADILM SLRTQTERHN TPIFASLKDY GNAYCITQQR LKAHAKNKEV IILHPGPVHR DIDIESAVLE DERSKVLEQV KNGVAMRMAV LEFLLLD // ID PYRE_HELPY Reviewed; 201 AA. AC P56162; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; DE Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208}; DE Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208}; DE EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208}; GN Name=pyrE {ECO:0000255|HAMAP-Rule:MF_01208}; GN OrderedLocusNames=HP_1257; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CRYSTALLIZATION. RX PubMed=12872993; RA Kim M.-K., Song H.-E., Kim Y.S., Rho S.-H., Im Y.J., Lee J.H., RA Kang G.B., Eom S.H.; RT "Crystallization and preliminary X-ray crystallographic analysis of RT orotate phosphoribosyltransferase from Helicobacter pylori."; RL Mol. Cells 15:361-363(2003). CC -!- FUNCTION: Catalyzes the transfer of a ribosyl phosphate group from CC 5-phosphoribose 1-diphosphate to orotate, leading to the formation CC of orotidine monophosphate (OMP). {ECO:0000255|HAMAP- CC Rule:MF_01208}. CC -!- CATALYTIC ACTIVITY: Orotidine 5'-phosphate + diphosphate = orotate CC + 5-phospho-alpha-D-ribose 1-diphosphate. {ECO:0000255|HAMAP- CC Rule:MF_01208}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01208}; CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; UMP from orotate: step 1/2. {ECO:0000255|HAMAP- CC Rule:MF_01208}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01208}. CC -!- SIMILARITY: Belongs to the purine/pyrimidine CC phosphoribosyltransferase family. PyrE subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01208}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08303.1; -; Genomic_DNA. DR PIR; A64677; A64677. DR RefSeq; NP_208049.1; NC_000915.1. DR RefSeq; WP_000351558.1; NC_018939.1. DR PDB; 4PAW; X-ray; 2.23 A; A/B=1-201. DR PDBsum; 4PAW; -. DR ProteinModelPortal; P56162; -. DR IntAct; P56162; 3. DR STRING; 85962.HP1257; -. DR PaxDb; P56162; -. DR PRIDE; P56162; -. DR EnsemblBacteria; AAD08303; AAD08303; HP_1257. DR GeneID; 900320; -. DR KEGG; heo:C694_06495; -. DR KEGG; hpy:HP1257; -. DR PATRIC; 20593891; VBIHelPyl33062_1316. DR eggNOG; ENOG4107VCP; Bacteria. DR eggNOG; COG0461; LUCA. DR KO; K00762; -. DR OMA; GHFRLTS; -. DR OrthoDB; EOG618QX7; -. DR BioCyc; HPY:HP1257-MONOMER; -. DR UniPathway; UPA00070; UER00119. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004588; F:orotate phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019856; P:pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.2020; -; 1. DR HAMAP; MF_01208; PyrE; 1. DR InterPro; IPR023031; OPRT. DR InterPro; IPR006273; Orotate_PRibTrfase_bac. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF00156; Pribosyltran; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR01367; pyrE_Therm; 1. DR PROSITE; PS00103; PUR_PYR_PR_TRANSFER; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Glycosyltransferase; Magnesium; KW Pyrimidine biosynthesis; Reference proteome; Transferase. FT CHAIN 1 201 Orotate phosphoribosyltransferase. FT /FTId=PRO_0000110701. FT REGION 113 121 5-phosphoribose 1-diphosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_01208}. FT BINDING 117 117 Orotate. {ECO:0000255|HAMAP- FT Rule:MF_01208}. FT BINDING 145 145 Orotate. {ECO:0000255|HAMAP- FT Rule:MF_01208}. FT HELIX 3 9 {ECO:0000244|PDB:4PAW}. FT STRAND 13 19 {ECO:0000244|PDB:4PAW}. FT STRAND 25 30 {ECO:0000244|PDB:4PAW}. FT HELIX 33 36 {ECO:0000244|PDB:4PAW}. FT HELIX 39 55 {ECO:0000244|PDB:4PAW}. FT STRAND 62 66 {ECO:0000244|PDB:4PAW}. FT TURN 67 70 {ECO:0000244|PDB:4PAW}. FT HELIX 71 81 {ECO:0000244|PDB:4PAW}. FT STRAND 84 91 {ECO:0000244|PDB:4PAW}. FT STRAND 94 96 {ECO:0000244|PDB:4PAW}. FT STRAND 108 119 {ECO:0000244|PDB:4PAW}. FT HELIX 120 131 {ECO:0000244|PDB:4PAW}. FT STRAND 135 144 {ECO:0000244|PDB:4PAW}. FT STRAND 146 148 {ECO:0000244|PDB:4PAW}. FT STRAND 169 174 {ECO:0000244|PDB:4PAW}. FT HELIX 182 184 {ECO:0000244|PDB:4PAW}. FT HELIX 186 189 {ECO:0000244|PDB:4PAW}. SQ SEQUENCE 201 AA; 21903 MW; 9FD8A1DE81787837 CRC64; MDIKACYQNA KALLEGHFLL SSGFHSNYYL QSAKVLEDPK LAEQLALELA KQIQEAHLNI ECVCSPAIGG ILAGYELARA LGVRFIFTER VDNTMALRRG FEVKKNEKIL VCEDIITTGK SAMECAKVLE EKGAQIVAFG ALANRGICKR AHSHLKAQEG ACLPSHLPLF ALEDFVFDMH KPSSCPLCAT SVAIKPGSRG N // ID PYRG_HELPY Reviewed; 538 AA. AC O25116; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=CTP synthase; DE EC=6.3.4.2; DE AltName: Full=CTP synthetase; DE AltName: Full=UTP--ammonia ligase; GN Name=pyrG; OrderedLocusNames=HP_0349; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with CC either L-glutamine or ammonia as the source of nitrogen. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + UTP + L-glutamine = ADP + phosphate + CC CTP + L-glutamate. CC -!- ENZYME REGULATION: Allosterically activated by GTP, when glutamine CC is the substrate. Inhibited by CTP (By similarity). {ECO:0000250}. CC -!- PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo CC pathway; CTP from UDP: step 2/2. CC -!- SUBUNIT: Homotetramer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the CTP synthase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07406.1; -; Genomic_DNA. DR PIR; E64563; E64563. DR RefSeq; NP_207147.1; NC_000915.1. DR RefSeq; WP_000373222.1; NC_018939.1. DR ProteinModelPortal; O25116; -. DR STRING; 85962.HP0349; -. DR PaxDb; O25116; -. DR PRIDE; O25116; -. DR EnsemblBacteria; AAD07406; AAD07406; HP_0349. DR GeneID; 900084; -. DR KEGG; heo:C694_01770; -. DR KEGG; hpy:HP0349; -. DR PATRIC; 20591931; VBIHelPyl33062_0362. DR eggNOG; ENOG4105C8D; Bacteria. DR eggNOG; COG0504; LUCA. DR KO; K01937; -. DR OMA; MRLGEYE; -. DR OrthoDB; EOG6RC3NR; -. DR BioCyc; HPY:HP0349-MONOMER; -. DR UniPathway; UPA00159; UER00277. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003883; F:CTP synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0044210; P:'de novo' CTP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_01227; PyrG; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR004468; CTP_synthase. DR InterPro; IPR017456; CTP_synthase_N. DR InterPro; IPR017926; GATASE. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11550; PTHR11550; 1. DR Pfam; PF06418; CTP_synth_N; 1. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00337; PyrG; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Glutamine amidotransferase; Ligase; KW Nucleotide-binding; Pyrimidine biosynthesis; Reference proteome. FT CHAIN 1 538 CTP synthase. FT /FTId=PRO_0000138189. FT DOMAIN 292 538 Glutamine amidotransferase type-1. FT REGION 1 254 Aminator domain. FT ACT_SITE 378 378 Nucleophile. {ECO:0000250}. FT ACT_SITE 513 513 {ECO:0000250}. FT ACT_SITE 515 515 {ECO:0000250}. SQ SEQUENCE 538 AA; 60616 MW; F663C01F4A613388 CRC64; MDRAKFIFVT GGVLSSLGKG ISSSSIATLL QHCNYQVSIL KIDPYINIDP GTMSPLEHGE VFVTSDGAET DLDIGHYERF LNRNLTRLNN FTTGQIFSSV IENERKGEYL GKTIQIVPHV TDEIKRRIKS AAKGLDFLIV EVGGTVGDME GMFYLEAIRQ LKLELGNEKV INVHVTLIPY IQTTNELKTK PTQHSVQELR RLGVTPQIIL ARSPKPLDKE LKNKIALSCD VEQDSVIVAT DTKSIYACPI LFLQEGILTP IARRFNLNKL HPKMAAWNTL VEKIIAPKHK VKIGFVGKYL SLKESYKSLI EALIHAGAHL DTQVNIEWLD SENFNEKTDL EGVDAILVPG GFGERGIEGK ICAIQRARLE KLPFLGICLG MQLAIVEFCR NVLGLKGANS TEFNQRCEYP VVYLIGDFMD QNHQKQVRTY NSPLGGTMRL GEYECEIMPN SLLEKAYKKP SIKERHRHRY EINPKYRQEW ENKGLKVVGF GSNHLIEAIE LEDHPFFVGV QFHPEFTSRL QSPNPIILDF IKSALSKS // ID QUEC_HELPY Reviewed; 226 AA. AC O25356; DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; DE EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633}; DE AltName: Full=7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; DE AltName: Full=PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; DE AltName: Full=Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; GN Name=queC {ECO:0000255|HAMAP-Rule:MF_01633}; GN OrderedLocusNames=HP_0639; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the ATP-dependent conversion of 7-carboxy-7- CC deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). CC {ECO:0000255|HAMAP-Rule:MF_01633}. CC -!- CATALYTIC ACTIVITY: 7-carboxy-7-carbaguanine + NH(3) + ATP = 7- CC cyano-7-carbaguanine + ADP + phosphate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_01633}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01633}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01633}; CC -!- PATHWAY: Purine metabolism; 7-cyano-7-deazaguanine biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_01633}. CC -!- SIMILARITY: Belongs to the QueC family. {ECO:0000255|HAMAP- CC Rule:MF_01633}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07701.1; -; Genomic_DNA. DR PIR; G64599; G64599. DR RefSeq; NP_207433.1; NC_000915.1. DR RefSeq; WP_000435648.1; NC_018939.1. DR ProteinModelPortal; O25356; -. DR DIP; DIP-3566N; -. DR IntAct; O25356; 2. DR MINT; MINT-186968; -. DR STRING; 85962.HP0639; -. DR PaxDb; O25356; -. DR PRIDE; O25356; -. DR DNASU; 898760; -. DR EnsemblBacteria; AAD07701; AAD07701; HP_0639. DR GeneID; 898760; -. DR KEGG; heo:C694_03305; -. DR KEGG; hpy:HP0639; -. DR PATRIC; 20592563; VBIHelPyl33062_0670. DR eggNOG; ENOG4105FD2; Bacteria. DR eggNOG; COG0603; LUCA. DR KO; K06920; -. DR OMA; AYGYGCD; -. DR OrthoDB; EOG6091HB; -. DR BioCyc; HPY:HP0639-MONOMER; -. DR UniPathway; UPA00391; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_01633; QueC; 1. DR InterPro; IPR018317; QueC. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF06508; QueC; 1. DR PIRSF; PIRSF006293; ExsB; 1. DR TIGRFAMs; TIGR00364; TIGR00364; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Metal-binding; KW Nucleotide-binding; Queuosine biosynthesis; Reference proteome; Zinc. FT CHAIN 1 226 7-cyano-7-deazaguanine synthase. FT /FTId=PRO_0000246852. FT NP_BIND 10 20 ATP. {ECO:0000255|HAMAP-Rule:MF_01633}. FT METAL 190 190 Zinc. {ECO:0000255|HAMAP-Rule:MF_01633}. FT METAL 205 205 Zinc. {ECO:0000255|HAMAP-Rule:MF_01633}. FT METAL 208 208 Zinc. {ECO:0000255|HAMAP-Rule:MF_01633}. FT METAL 211 211 Zinc. {ECO:0000255|HAMAP-Rule:MF_01633}. SQ SEQUENCE 226 AA; 25278 MW; A34256A8BE1EC325 CRC64; MEQKICVIGF SGGQDSTTLA VWAKKRFKKV CLVGFDYAQK HSVELECAQK IASLLQLPYE IIPLDFLENI TRSALFKNSN DLIGHSHAQN KDLPNSFVPN RNAIFITLLH SYAQKLGASN IALGVSQADF SGYPDCKEDF IKSIEHALNL GSNTAIKILT PLMFLNKAQE FQMAKDLGVL DLVIKETHTC YQGERKILHA YGYGCDKCPA CQLRKKGFEE FQANKK // ID QUED_HELPY Reviewed; 200 AA. AC O25587; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=6-carboxy-5,6,7,8-tetrahydropterin synthase; DE Short=CPH4 synthase; DE EC=4.1.2.50; DE AltName: Full=Queuosine biosynthesis protein QueD; GN Name=queD; OrderedLocusNames=HP_0933; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of 7,8-dihydroneopterin CC triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) CC and acetaldehyde. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 7,8-dihydroneopterin 3'-triphosphate + H(2)O = CC 6-carboxy-5,6,7,8-tetrahydropterin + acetaldehyde + triphosphate. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- PATHWAY: Purine metabolism; 7-cyano-7-deazaguanine biosynthesis. CC -!- MISCELLANEOUS: The active site is at the interface between 2 CC subunits. The proton acceptor Cys is on one subunit, and the CC charge relay system is on the other subunit (By similarity). CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the PTPS family. QueD subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07981.1; -; Genomic_DNA. DR PIR; E64636; E64636. DR RefSeq; NP_207725.1; NC_000915.1. DR RefSeq; WP_000236875.1; NC_018939.1. DR ProteinModelPortal; O25587; -. DR DIP; DIP-3587N; -. DR IntAct; O25587; 15. DR MINT; MINT-159394; -. DR STRING; 85962.HP0933; -. DR PaxDb; O25587; -. DR PRIDE; O25587; -. DR EnsemblBacteria; AAD07981; AAD07981; HP_0933. DR GeneID; 899462; -. DR KEGG; heo:C694_04800; -. DR KEGG; hpy:HP0933; -. DR PATRIC; 20593167; VBIHelPyl33062_0969. DR eggNOG; COG0720; LUCA. DR KO; K01737; -. DR OMA; DHAHHFW; -. DR OrthoDB; EOG6KMB7Z; -. DR BioCyc; HPY:HP0933-MONOMER; -. DR UniPathway; UPA00391; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-KW. DR InterPro; IPR007115; 6-PTP_synth/QueD. DR PANTHER; PTHR12589; PTHR12589; 1. DR Pfam; PF01242; PTPS; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Metal-binding; Queuosine biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 200 6-carboxy-5,6,7,8-tetrahydropterin FT synthase. FT /FTId=PRO_0000057926. FT ACT_SITE 23 23 Proton acceptor. {ECO:0000250}. FT ACT_SITE 68 68 Charge relay system. {ECO:0000250}. FT ACT_SITE 136 136 Charge relay system. {ECO:0000250}. FT METAL 13 13 Zinc. {ECO:0000250}. FT METAL 28 28 Zinc. {ECO:0000250}. FT METAL 30 30 Zinc. {ECO:0000250}. SQ SEQUENCE 200 AA; 23663 MW; B7770C529F91FF15 CRC64; MVIRRLYQFC ASHVVRNCSS LKCAQNIHGH NYEVEVFIET NRLDNANMAL DFGLMQQEMQ VFIESFDHAH HFWDKESLEF QRFIENHCVR YVKCSFNLSA ESYALMFLYY LTKILQKSVF SNDEGELKVS SVRVHETKNG YAESFLKDLE NPHFKSLVHD HCVSFSQGIQ NLWHDKDFFN KIISDEKQCF FHAKPLHQIP // ID PYRC_HELPY Reviewed; 339 AA. AC P56465; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Dihydroorotase; DE Short=DHOase; DE EC=3.5.2.3; GN Name=pyrC; OrderedLocusNames=HP_0581; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: (S)-dihydroorotate + H(2)O = N-carbamoyl-L- CC aspartate. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 2 Zn(2+) ions per subunit. {ECO:0000250}; CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 3/3. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the DHOase family. Type 1 subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07635.1; -; Genomic_DNA. DR PIR; E64592; E64592. DR RefSeq; NP_207376.1; NC_000915.1. DR RefSeq; WP_000406682.1; NC_018939.1. DR ProteinModelPortal; P56465; -. DR STRING; 85962.HP0581; -. DR PaxDb; P56465; -. DR PRIDE; P56465; -. DR EnsemblBacteria; AAD07635; AAD07635; HP_0581. DR GeneID; 900032; -. DR KEGG; heo:C694_02995; -. DR KEGG; hpy:HP0581; -. DR PATRIC; 20592435; VBIHelPyl33062_0606. DR eggNOG; ENOG4105EKE; Bacteria. DR eggNOG; COG0418; LUCA. DR KO; K01465; -. DR OMA; YAEAFEQ; -. DR OrthoDB; EOG6TFCMH; -. DR BioCyc; HPY:HP0581-MONOMER; -. DR BRENDA; 3.5.2.3; 2604. DR UniPathway; UPA00070; UER00117. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004151; F:dihydroorotase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019856; P:pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR HAMAP; MF_00219; PyrC_type1; 1. DR InterPro; IPR004721; DHOdimr. DR InterPro; IPR002195; Dihydroorotase_CS. DR InterPro; IPR032466; Metal_Hydrolase. DR PANTHER; PTHR11647:SF59; PTHR11647:SF59; 1. DR PIRSF; PIRSF001237; DHOdimr; 1. DR SUPFAM; SSF51556; SSF51556; 1. DR TIGRFAMs; TIGR00856; pyrC_dimer; 1. DR PROSITE; PS00482; DIHYDROOROTASE_1; 1. DR PROSITE; PS00483; DIHYDROOROTASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Metal-binding; Pyrimidine biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 339 Dihydroorotase. FT /FTId=PRO_0000147208. FT METAL 12 12 Zinc 1; via tele nitrogen. {ECO:0000250}. FT METAL 14 14 Zinc 1; via tele nitrogen. {ECO:0000250}. FT METAL 94 94 Zinc 1; via carbamate group. FT {ECO:0000250}. FT METAL 94 94 Zinc 2; via carbamate group. FT {ECO:0000250}. FT METAL 133 133 Zinc 2; via pros nitrogen. {ECO:0000250}. FT METAL 167 167 Zinc 2; via tele nitrogen. {ECO:0000250}. FT METAL 239 239 Zinc 1. {ECO:0000250}. FT MOD_RES 94 94 N6-carboxylysine. {ECO:0000250}. SQ SEQUENCE 339 AA; 37883 MW; DC0186A914FA11E4 CRC64; MEITLFDPID AHLHVRENAL LKAVLGYSSE PFSAAVIMPN LSKPLIDTPT TLEYEEEILN HSSNFKPLMS LYFNDGLTLE ELQCAKEKGV RFLKLYPKGM TTNAQNGTSD LLGEKTLEVL ENAQKLGFIL CIHAEQTGFC LDKEFLCHSV LETFALSFPK LKIIIEHLSD WRSIALIEKH DNLYATLTLH HISMTLDDLL GGSLNPHCFC KPLIKTKKDQ ERLLSLALKA HPKISFGSDS APHFISKKHS ANIPAGIFSA PILLPALCEL FEKHNALENL QAFISDNAKT IYGLENLPSK KARLSKKPFM IPTHTLCLNE KIAILRGGET LSWNLQEIA // ID PYRD_HELPY Reviewed; 351 AA. AC O25655; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 115. DE RecName: Full=Dihydroorotate dehydrogenase (quinone); DE EC=1.3.5.2; DE AltName: Full=DHOdehase; DE Short=DHOD; DE Short=DHODase; DE AltName: Full=Dihydroorotate oxidase; GN Name=pyrD; OrderedLocusNames=HP_1011; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of dihydroorotate to orotate CC with quinone as electron acceptor. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: (S)-dihydroorotate + a quinone = orotate + a CC quinol. CC -!- COFACTOR: CC Name=FMN; Xref=ChEBI:CHEBI:58210; Evidence={ECO:0000250}; CC Note=Binds 1 FMN per subunit. {ECO:0000250}; CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; orotate from (S)-dihydroorotate (quinone route): step CC 1/1. CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Peripheral CC membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the dihydroorotate dehydrogenase family. CC Type 2 subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08055.1; -; Genomic_DNA. DR PIR; C64646; C64646. DR RefSeq; NP_207801.1; NC_000915.1. DR RefSeq; WP_000967190.1; NC_018939.1. DR PDB; 1LX3; Model; -; A=1-351. DR PDBsum; 1LX3; -. DR ProteinModelPortal; O25655; -. DR STRING; 85962.HP1011; -. DR PaxDb; O25655; -. DR PRIDE; O25655; -. DR EnsemblBacteria; AAD08055; AAD08055; HP_1011. DR GeneID; 899546; -. DR KEGG; heo:C694_05235; -. DR KEGG; hpy:HP1011; -. DR PATRIC; 20593357; VBIHelPyl33062_1059. DR eggNOG; ENOG4107QYT; Bacteria. DR eggNOG; COG0167; LUCA. DR KO; K00254; -. DR OMA; ERIKMGA; -. DR OrthoDB; EOG65BDN8; -. DR BioCyc; HPY:HP1011-MONOMER; -. DR UniPathway; UPA00070; UER00946. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004152; F:dihydroorotate dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00225; DHO_dh_type2; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR005720; Dihydroorotate_DH. DR InterPro; IPR012135; Dihydroorotate_DH_1_2. DR InterPro; IPR005719; Dihydroorotate_DH_2. DR InterPro; IPR001295; Dihydroorotate_DH_CS. DR Pfam; PF01180; DHO_dh; 1. DR PIRSF; PIRSF000164; DHO_oxidase; 1. DR TIGRFAMs; TIGR01036; pyrD_sub2; 1. DR PROSITE; PS00911; DHODEHASE_1; 1. DR PROSITE; PS00912; DHODEHASE_2; 1. PE 3: Inferred from homology; KW 3D-structure; Cell membrane; Complete proteome; Flavoprotein; FMN; KW Membrane; Oxidoreductase; Pyrimidine biosynthesis; Reference proteome. FT CHAIN 1 351 Dihydroorotate dehydrogenase (quinone). FT /FTId=PRO_0000148445. FT NP_BIND 67 71 FMN. {ECO:0000250}. FT NP_BIND 312 313 FMN. {ECO:0000250}. FT REGION 116 120 Substrate binding. {ECO:0000250}. FT REGION 243 244 Substrate binding. {ECO:0000250}. FT ACT_SITE 181 181 Nucleophile. {ECO:0000250}. FT BINDING 71 71 Substrate. {ECO:0000250}. FT BINDING 91 91 FMN; via amide nitrogen. {ECO:0000250}. FT BINDING 145 145 FMN. {ECO:0000250}. FT BINDING 178 178 FMN. {ECO:0000250}. FT BINDING 178 178 Substrate. {ECO:0000250}. FT BINDING 183 183 Substrate. {ECO:0000250}. FT BINDING 214 214 FMN. {ECO:0000250}. FT BINDING 242 242 FMN; via carbonyl oxygen. {ECO:0000250}. FT BINDING 262 262 FMN; via amide nitrogen. {ECO:0000250}. FT BINDING 291 291 FMN; via amide nitrogen. {ECO:0000250}. SQ SEQUENCE 351 AA; 39002 MW; 784D32A23A36F20C CRC64; MLYSLVKKYL FSLDAEDAHE KVCKILRMLS SSPFLCNLID SQWGYQNPKL ENEILGLHFP NPLGLAAGFD KNASMLRALM AFGFGYLEAG TLTNEAQVGN ERPRLFRHIE EESLQNAMGF NNYGAILGVR SFKRFAPYKT PIGINLGKNK HIEQAHALED YKAVLSKCLN IGDYYTFNLS SPNTPNLRDL QNKAFVHELF CMAKEMTHKP LFLKIAPDLE TDDMLEIVNS AIGAGAHGII ATNTTIDKSL VFAPKEMGGL SGKCLTKKSR EIFKELAKAF FNKSVLVSVG GISDAKEAYE RIKMGASLLQ IYSAFIYNGP NLCQNILKDL VKLLQKDGFL SVKEAIGADL R // ID RBFA_HELPY Reviewed; 111 AA. AC O25688; DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; GN Name=rbfA {ECO:0000255|HAMAP-Rule:MF_00003}; GN OrderedLocusNames=HP_1047; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Associates with free 30S ribosomal subunits (but not CC with 30S subunits that are part of 70S ribosomes or polysomes). CC Essential for efficient processing of 16S rRNA. May interact with CC the 5'-terminal helix region of 16S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_00003}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00003}. CC -!- SIMILARITY: Belongs to the RbfA family. {ECO:0000255|HAMAP- CC Rule:MF_00003}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08092.1; -; Genomic_DNA. DR PIR; G64650; G64650. DR RefSeq; NP_207838.1; NC_000915.1. DR RefSeq; WP_000991190.1; NC_018939.1. DR ProteinModelPortal; O25688; -. DR IntAct; O25688; 1. DR STRING; 85962.HP1047; -. DR PaxDb; O25688; -. DR PRIDE; O25688; -. DR EnsemblBacteria; AAD08092; AAD08092; HP_1047. DR GeneID; 899582; -. DR KEGG; heo:C694_05415; -. DR KEGG; hpy:HP1047; -. DR PATRIC; 20593431; VBIHelPyl33062_1096. DR eggNOG; ENOG4105MGB; Bacteria. DR eggNOG; COG0858; LUCA. DR KO; K02834; -. DR OMA; GKHHAYV; -. DR OrthoDB; EOG6K13WG; -. DR BioCyc; HPY:HP1047-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.300.20; -; 1. DR HAMAP; MF_00003; RbfA; 1. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR000238; Ribosome-bd_facA. DR InterPro; IPR023799; Ribosome-bd_facA_dom. DR InterPro; IPR020053; Ribosome-bd_factorA_CS. DR Pfam; PF02033; RBFA; 1. DR SUPFAM; SSF89919; SSF89919; 1. DR TIGRFAMs; TIGR00082; rbfA; 1. DR PROSITE; PS01319; RBFA; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Reference proteome; rRNA processing. FT CHAIN 1 111 Ribosome-binding factor A. FT /FTId=PRO_0000102672. SQ SEQUENCE 111 AA; 12499 MW; D13DCAAAA021B22B CRC64; MNAHKERLES NLLELLQEAL ASLNDSELNS LSVTKVECSK GKHHAYVFVL SSDHKILSKL KKAEGLIRQF VLQASGWFKC PKLSFVSDNS LEKQLRLDAI FNEIAKGKDN D // ID QUEA_HELPY Reviewed; 345 AA. AC O25702; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000255|HAMAP-Rule:MF_00113}; DE EC=2.4.99.17 {ECO:0000255|HAMAP-Rule:MF_00113}; DE AltName: Full=Queuosine biosynthesis protein QueA {ECO:0000255|HAMAP-Rule:MF_00113}; GN Name=queA {ECO:0000255|HAMAP-Rule:MF_00113}; GN OrderedLocusNames=HP_1062; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transfers and isomerizes the ribose moiety from AdoMet CC to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give CC epoxyqueuosine (oQ-tRNA). {ECO:0000255|HAMAP-Rule:MF_00113}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + 7-aminomethyl-7- CC carbaguanosine(34) in tRNA = L-methionine + adenine + CC epoxyqueuosine(34) in tRNA. {ECO:0000255|HAMAP-Rule:MF_00113}. CC -!- PATHWAY: tRNA modification; tRNA-queuosine biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_00113}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00113}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00113}. CC -!- SIMILARITY: Belongs to the QueA family. {ECO:0000255|HAMAP- CC Rule:MF_00113}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08102.1; -; Genomic_DNA. DR PIR; F64652; F64652. DR RefSeq; NP_207853.1; NC_000915.1. DR RefSeq; WP_000657423.1; NC_018939.1. DR ProteinModelPortal; O25702; -. DR STRING; 85962.HP1062; -. DR PaxDb; O25702; -. DR PRIDE; O25702; -. DR EnsemblBacteria; AAD08102; AAD08102; HP_1062. DR GeneID; 899597; -. DR KEGG; heo:C694_05490; -. DR KEGG; hpy:HP1062; -. DR PATRIC; 20593461; VBIHelPyl33062_1111. DR eggNOG; ENOG4105E2N; Bacteria. DR eggNOG; COG0809; LUCA. DR KO; K07568; -. DR OMA; YGDAMFL; -. DR OrthoDB; EOG6X6RBB; -. DR BioCyc; HPY:HP1062-MONOMER; -. DR UniPathway; UPA00392; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00113; QueA; 1. DR InterPro; IPR003699; QueA. DR Pfam; PF02547; Queuosine_synth; 1. DR SUPFAM; SSF111337; SSF111337; 1. DR TIGRFAMs; TIGR00113; queA; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Queuosine biosynthesis; KW Reference proteome; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 345 S-adenosylmethionine:tRNA FT ribosyltransferase-isomerase. FT /FTId=PRO_0000165409. SQ SEQUENCE 345 AA; 40029 MW; F39F41E00DC55A67 CRC64; MKEFDLESYD YYLPKELIAS YPVLPKEKAK LLVYERRSQK ITHTTFEHVL DFFPKNALIV LNDTKVIKAR LFGSKHAFLP SKTTEVFFHR FFKNNTALTQ IKGKIKVGDK IFFDANYHAE VLELLHNGQR LIAFYDNKTP LNQENILKLL EQYGHMPLPP YIKRADESLD AHEYQSVFAK HMGAVAAPTA SLHFSQNTLE KLLKDFKHAF LTLHVGAGTF LSVETKDIRE HQIHTEVLRI PKKSQEILQK SQEILCVGTT ALRSVEYFKR LENPNQEAFE CDIFLHFANP ILHVNYLLTN FHLPKSSLLM LVSTMIGLEK TKEIYKTAIE KKYRFYSYGD GMLIL // ID RADA_HELPY Reviewed; 448 AA. AC P56148; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 11-JAN-2001, sequence version 2. DT 11-MAY-2016, entry version 103. DE RecName: Full=DNA repair protein RadA {ECO:0000255|HAMAP-Rule:MF_01498}; DE EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_01498}; DE AltName: Full=Branch migration protein RadA {ECO:0000255|HAMAP-Rule:MF_01498}; GN Name=radA {ECO:0000255|HAMAP-Rule:MF_01498}; Synonyms=sms; GN OrderedLocusNames=HP_0223; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA-dependent ATPase involved in processing of CC recombination intermediates, plays a role in repairing DNA breaks. CC Stimulates the branch migration of RecA-mediated strand transfer CC reactions, allowing the 3' invading strand to extend heteroduplex CC DNA faster. Binds ssDNA in the presence of ADP but not other CC nucleotides, has ATPase activity that is stimulated by ssDNA and CC various branched DNA structures, but inhibited by SSB. Does not CC have RecA's homology-searching function. {ECO:0000255|HAMAP- CC Rule:MF_01498}. CC -!- DOMAIN: Has a putative N-terminal zinc-finger, a middle region CC with homology to RecA with ATPase motifs including the RadA KNRFG CC motif, while the C-terminus is homologous to Lon protease. CC {ECO:0000255|HAMAP-Rule:MF_01498}. CC -!- SIMILARITY: Belongs to the RecA family. RadA subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01498}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07290.1; -; Genomic_DNA. DR PIR; G64547; G64547. DR RefSeq; NP_207021.1; NC_000915.1. DR RefSeq; WP_015056031.1; NC_018939.1. DR ProteinModelPortal; P56148; -. DR IntAct; P56148; 1. DR MINT; MINT-4065708; -. DR STRING; 85962.HP0223; -. DR PaxDb; P56148; -. DR EnsemblBacteria; AAD07290; AAD07290; HP_0223. DR GeneID; 899167; -. DR KEGG; heo:C694_01125; -. DR KEGG; hpy:HP0223; -. DR PATRIC; 20591669; VBIHelPyl33062_0234. DR eggNOG; ENOG4105DNJ; Bacteria. DR eggNOG; COG1066; LUCA. DR KO; K04485; -. DR OMA; FEGERGH; -. DR OrthoDB; EOG6DRPHC; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro. DR GO; GO:0008094; F:DNA-dependent ATPase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01498; RadA_bact; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR004504; DNA_repair_RadA. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020588; RecA_ATP-bd. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR PRINTS; PR01874; DNAREPAIRADA. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54211; SSF54211; 2. DR TIGRFAMs; TIGR00416; sms; 1. DR PROSITE; PS50162; RECA_2; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA damage; DNA repair; DNA-binding; KW Hydrolase; Metal-binding; Nucleotide-binding; Reference proteome; KW Stress response; Zinc; Zinc-finger. FT CHAIN 1 448 DNA repair protein RadA. FT /FTId=PRO_0000187928. FT ZN_FING 10 27 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_01498}. FT NP_BIND 96 103 ATP. {ECO:0000255|HAMAP-Rule:MF_01498}. FT REGION 351 448 Lon-protease-like. {ECO:0000255|HAMAP- FT Rule:MF_01498}. FT MOTIF 253 257 RadA KNRFG motif. {ECO:0000255|HAMAP- FT Rule:MF_01498}. SQ SEQUENCE 448 AA; 49451 MW; C8A4DED6BD81ACC8 CRC64; MAKKTSLFEC QHCGFTSPKW LGKCVQCNAW ESFIELNQAQ KEVLNTLKKP IPQAQKSVSI AAIEHEEVIK FSSTQSELDI VLGGGIAKGG LYLVGGSPGV GKSTLLLKVA SGLAKNQQKV LYVSGEESLS QIKMRAIRLD CIEKELYLLN EINWPVIKAN IESENYFACV IDSIQTLYSP EISSAPGSIS QVREITFELM RLAKTRDIAI FIIGHITKEG SIAGPRVLEH MVDSVLYFEG DPSRELRILR SFKNRFGPTS EIGLFEMKEQ GLVSAKEASS LFFSKEEPME GSAITITLEG SRALILEIQA LVSECSFGSP KRLANGFDTN RLNMLIALLE KKLEIPLNRH DVFINVSGGI KISEPACDLA VIASILSSFK NRKIDNKTAF LGEVSLNGRI LEAPNLNARL KEMENYGFLK AILPKKPSQK TSIKCYEANA VGKIVEWM // ID RF1_HELPY Reviewed; 352 AA. AC P55998; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Peptide chain release factor 1; DE Short=RF-1; GN Name=prfA; OrderedLocusNames=HP_0077; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Peptide chain release factor 1 directs the termination CC of translation in response to the peptide chain termination codons CC UAG and UAA. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- PTM: Methylated by PrmC. Methylation increases the termination CC efficiency of RF1 (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the prokaryotic/mitochondrial release CC factor family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07148.1; -; Genomic_DNA. DR PIR; E64529; E64529. DR RefSeq; NP_206877.1; NC_000915.1. DR RefSeq; WP_000025135.1; NC_018939.1. DR ProteinModelPortal; P55998; -. DR SMR; P55998; 47-350. DR IntAct; P55998; 3. DR STRING; 85962.HP0077; -. DR PaxDb; P55998; -. DR PRIDE; P55998; -. DR EnsemblBacteria; AAD07148; AAD07148; HP_0077. DR GeneID; 899973; -. DR KEGG; heo:C694_00375; -. DR KEGG; hpy:HP0077; -. DR PATRIC; 20591359; VBIHelPyl33062_0080. DR eggNOG; ENOG4105C8K; Bacteria. DR eggNOG; COG0216; LUCA. DR KO; K02835; -. DR OMA; NRLSEHR; -. DR OrthoDB; EOG6TN48J; -. DR BioCyc; HPY:HP0077-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.160.20; -; 1. DR HAMAP; MF_00093; Rel_fac_1; 1. DR InterPro; IPR014720; dsRBD_dom. DR InterPro; IPR005139; PCRF. DR InterPro; IPR000352; Pep_chain_release_fac_I_II. DR InterPro; IPR004373; PrfA. DR Pfam; PF03462; PCRF; 1. DR Pfam; PF00472; RF-1; 1. DR SMART; SM00937; PCRF; 1. DR TIGRFAMs; TIGR00019; prfA; 1. DR PROSITE; PS00745; RF_PROK_I; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methylation; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 352 Peptide chain release factor 1. FT /FTId=PRO_0000177681. FT MOD_RES 233 233 N5-methylglutamine. {ECO:0000250}. SQ SEQUENCE 352 AA; 39587 MW; 4643B5DDC6E6F2E3 CRC64; MSILAEKLSS ILKRYDELTA LLSSAEVVSD IKKLTELSKE QSSIEEISIA SKEYLSVLEN IKENKELLED KELSELAKEE LKILEIQKSD LETAIKQLLI PKDPNDDKNI YLELRAGTGG DEAGIFVGDL FKAYCRYADL KKWKVEIVSS SENSVGGYKE IIALIKGKGV YSRLKFEAGT HRVQRVPETE SQGRIHTSAI TVAIMPEVDD VEVSINPSDL KIEVFRAGGH GGQCVNTTDS AVRITHLPTN ISVSMQDEKS QHKNKDKALK ILKARLYEKQ IEEQQLANAK DRKEQVGSGD RSERIRTYNY PQNRLSEHRI NLTLYSLEEI MLSGNLDEVI NPLIAHAQSQ FE // ID RF2_HELPY Reviewed; 363 AA. AC P55999; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Peptide chain release factor 2; DE Short=RF-2; GN Name=prfB; OrderedLocusNames=HP_0171; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Peptide chain release factor 2 directs the termination CC of translation in response to the peptide chain termination codons CC UGA and UAA. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- PTM: Methylated by PrmC. Methylation increases the termination CC efficiency of RF2 (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the prokaryotic/mitochondrial release CC factor family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07236.1; -; Genomic_DNA. DR PIR; C64541; C64541. DR RefSeq; NP_206970.1; NC_000915.1. DR RefSeq; WP_000371130.1; NC_018939.1. DR ProteinModelPortal; P55999; -. DR STRING; 85962.HP0171; -. DR PaxDb; P55999; -. DR PRIDE; P55999; -. DR EnsemblBacteria; AAD07236; AAD07236; HP_0171. DR GeneID; 899148; -. DR KEGG; heo:C694_00845; -. DR KEGG; hpy:HP0171; -. DR PATRIC; 20591563; VBIHelPyl33062_0181. DR eggNOG; ENOG4105CG1; Bacteria. DR eggNOG; COG1186; LUCA. DR KO; K02836; -. DR OMA; HVEIDES; -. DR OrthoDB; EOG6TN48J; -. DR BioCyc; HPY:HP0171-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.160.20; -; 1. DR HAMAP; MF_00094; Rel_fac_2; 1. DR InterPro; IPR014720; dsRBD_dom. DR InterPro; IPR005139; PCRF. DR InterPro; IPR000352; Pep_chain_release_fac_I_II. DR InterPro; IPR020853; Peptide_chain_release_fac2_bac. DR InterPro; IPR004374; PrfB. DR PANTHER; PTHR11075:SF6; PTHR11075:SF6; 1. DR Pfam; PF03462; PCRF; 1. DR Pfam; PF00472; RF-1; 1. DR SMART; SM00937; PCRF; 1. DR TIGRFAMs; TIGR00020; prfB; 1. DR PROSITE; PS00745; RF_PROK_I; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methylation; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 363 Peptide chain release factor 2. FT /FTId=PRO_0000166821. FT MOD_RES 251 251 N5-methylglutamine. {ECO:0000250}. SQ SEQUENCE 363 AA; 41317 MW; 7DE21BC84D69DA9E CRC64; MDNYTYSELL KSLQNKCDNI ALIIKPEKIK QELERIEKEQ EDPNFWQDVL KARDTNKEKV RLNRLLETYQ KTKNSLDESV ELFELAQNDN DEVTLSLLYE EAPILENSVQ KVEIEIMLSG ENDASNAIIT IQPGAGGTES QDWASILYRM YLRWAERRGF KSEILDYQDG EEAGIKGVAF IIKGENAYGY LKNENGVHRL VRISPFDANA KRHTSFASVQ ISPELDDDID IEIDEKDVRY DYYRSSGAGG QHVNKTESAV RITHFPTGIV VQCQNDRSQH KNKASALKML KSKLYELELE KQQSSAKNEE KSEIGWGHQI RSYVLAPYQQ VKDARSNTAY SNVEAILDGD IDAILEGVLI AKA // ID RECN_HELPY Reviewed; 524 AA. AC O25943; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=DNA repair protein RecN; DE AltName: Full=Recombination protein N; GN Name=recN; OrderedLocusNames=HP_1393; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: May be involved in recombinational repair of damaged CC DNA. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the RecN family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08433.1; -; Genomic_DNA. DR PIR; A64694; A64694. DR RefSeq; NP_208184.1; NC_000915.1. DR RefSeq; WP_001204425.1; NC_018939.1. DR ProteinModelPortal; O25943; -. DR DIP; DIP-3217N; -. DR IntAct; O25943; 5. DR MINT; MINT-173060; -. DR STRING; 85962.HP1393; -. DR PaxDb; O25943; -. DR PRIDE; O25943; -. DR EnsemblBacteria; AAD08433; AAD08433; HP_1393. DR GeneID; 899903; -. DR KEGG; heo:C694_07195; -. DR KEGG; hpy:HP1393; -. DR PATRIC; 20594173; VBIHelPyl33062_1457. DR eggNOG; ENOG4105C4F; Bacteria. DR eggNOG; COG0497; LUCA. DR KO; K03631; -. DR OMA; KEKTRYF; -. DR OrthoDB; EOG6WQD34; -. DR BioCyc; HPY:HP1393-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR004604; DNA_recomb/repair_RecN. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003395; RecF/RecN/SMC_N. DR PANTHER; PTHR11059; PTHR11059; 1. DR Pfam; PF02463; SMC_N; 1. DR PIRSF; PIRSF003128; RecN; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA damage; DNA repair; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 524 DNA repair protein RecN. FT /FTId=PRO_0000188019. FT NP_BIND 36 43 ATP. {ECO:0000255}. SQ SEQUENCE 524 AA; 59565 MW; 1F78EBFF0CFCE68A CRC64; MRDFNNAQIT RLKVRQNAVF EKLDLEFKDG LSAISGASGV GKSVLIASLL GAFGLKESNA SNIEVELIAP FLDTEEYGIF REDEHEPLVI SVIKKEKTRY FLNQTSLSKN TLKALLKGLI KRLSNDRFSQ NELNDILMLS LLDGYIQNEN KAFSPLLGAL EEKFTRLEKL EKERRLLEDK KRFQKDLEER LNFEKMKLER LDLKEDEYER LLEQKKLLSS KEKLNDKIAL ALEVLENTHK ITHALESVGH SAEFLKSALL EASALLEKEQ AKLEECERLD IEKVLERLGM LSGIIKDYGS IMHAKERLGH VKNELHNLKE IDSHCETYHK EIERLKTECL KLCEEISGFR KEYLAGFNAL LSAKAKDLLL KSPSLVLEDA PMSEKGAQKL VLNLQNSQLE TLSSGEYSRL RLAFMLLEME FLKDFKGVLV LDEMDSNLSG EESLAVSKAL ETLSSHSQIF AISHQVHIPA LAKNHILVFK ENHKSLAKTL NNEERVLEIA RMIGGSENIE SAISFAKEKL KAQE // ID RECA_HELPY Reviewed; 347 AA. AC P42445; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 104. DE RecName: Full=Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268}; DE AltName: Full=Recombinase A {ECO:0000255|HAMAP-Rule:MF_00268}; GN Name=recA {ECO:0000255|HAMAP-Rule:MF_00268}; GN OrderedLocusNames=HP_0153; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 53726 / 84-183; RX PubMed=7768597; RA Thompson S.A., Blaser M.J.; RT "Isolation of the Helicobacter pylori recA gene and involvement of the RT recA region in resistance to low pH."; RL Infect. Immun. 63:2185-2193(1995). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION, AND SUGGESTION OF RP A POST-TRANSLATIONAL MODIFICATION. RC STRAIN=69A, and ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=7476856; DOI=10.1007/BF02423452; RA Schmitt W., Odenbreit S., Heuermann D., Haas R.; RT "Cloning of the Helicobacter pylori recA gene and functional RT characterization of its product."; RL Mol. Gen. Genet. 248:563-572(1995). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Can catalyze the hydrolysis of ATP in the presence of CC single-stranded DNA, the ATP-dependent uptake of single-stranded CC DNA by duplex DNA, and the ATP-dependent hybridization of CC homologous single-stranded DNAs. It interacts with LexA causing CC its activation and leading to its autocatalytic cleavage. CC -!- FUNCTION: Deletion of this gene leads to the inability of the CC bacteria to perform homologous recombination, and markedly CC increases UV sensitivity. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00268}. CC -!- PTM: The protein migrates as a 40 kDa protein in strains 69A and CC NCTC 11637. When overexpressed in E.coli a 38 kDa protein is made CC which is unable to complement the E.coli deletion mutant. It has CC been suggested this size difference is due to a post-translational CC modification. CC -!- SIMILARITY: Belongs to the RecA family. {ECO:0000255|HAMAP- CC Rule:MF_00268}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; Z35478; CAA84615.1; -; Genomic_DNA. DR EMBL; U13756; AAC43379.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07218.1; -; Genomic_DNA. DR PIR; S58683; S58683. DR RefSeq; NP_206952.1; NC_000915.1. DR RefSeq; WP_000963128.1; NC_018939.1. DR ProteinModelPortal; P42445; -. DR SMR; P42445; 6-330. DR STRING; 85962.HP0153; -. DR PaxDb; P42445; -. DR PRIDE; P42445; -. DR EnsemblBacteria; AAD07218; AAD07218; HP_0153. DR GeneID; 898827; -. DR KEGG; heo:C694_00765; -. DR KEGG; hpy:HP0153; -. DR PATRIC; 20591527; VBIHelPyl33062_0163. DR eggNOG; ENOG4105C68; Bacteria. DR eggNOG; COG0468; LUCA. DR KO; K03553; -. DR OMA; TRKGAWY; -. DR OrthoDB; EOG6ZKXNZ; -. DR BioCyc; HPY:HP0153-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003684; F:damaged DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008094; F:DNA-dependent ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003697; F:single-stranded DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IMP:CACAO. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.250.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00268; RecA; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR013765; DNA_recomb/repair_RecA. DR InterPro; IPR020584; DNA_recomb/repair_RecA_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020588; RecA_ATP-bd. DR InterPro; IPR023400; RecA_C. DR InterPro; IPR020587; RecA_monomer-monomer_interface. DR PANTHER; PTHR22942:SF1; PTHR22942:SF1; 1. DR Pfam; PF00154; RecA; 1. DR PRINTS; PR00142; RECA. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54752; SSF54752; 1. DR TIGRFAMs; TIGR02012; tigrfam_recA; 1. DR PROSITE; PS00321; RECA_1; 1. DR PROSITE; PS50162; RECA_2; 1. DR PROSITE; PS50163; RECA_3; 1. PE 1: Evidence at protein level; KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; KW DNA recombination; DNA repair; DNA-binding; Nucleotide-binding; KW Reference proteome; SOS response. FT CHAIN 1 347 Protein RecA. FT /FTId=PRO_0000122725. FT NP_BIND 67 74 ATP. {ECO:0000255|HAMAP-Rule:MF_00268}. FT VARIANT 40 40 S -> A (in strain: 69A and ATCC 53726). FT VARIANT 103 103 H -> Y (in strain: ATCC 53726). FT VARIANT 113 113 E -> Q (in strain: 69A). FT VARIANT 121 121 D -> S (in strain: ATCC 53726). FT VARIANT 125 125 Q -> E (in strain: ATCC 53726). FT VARIANT 203 203 M -> T (in strain: ATCC 53726). FT VARIANT 232 232 S -> T (in strain: 69A). FT VARIANT 319 319 D -> N (in strain: ATCC 53726). SQ SEQUENCE 347 AA; 37686 MW; C8417BA54ACD27D8 CRC64; MAIDEDKQKA ISLAIKQIDK VFGKGALVRL GDKQVEKIDS ISTGSLGLDL ALGIGGVPKG RIIEIYGPES SGKTTLSLHI IAECQKNGGV CAFIDAEHAL DVHYAKRLGV DTENLLVSQP DTGEQALEIL ETITRSGGID LVVVDSVAAL TPKAEIDGDM GDQHVGLQAR LMSHALRKIT GVLHKMNTTL IFINQIRMKI GMMGYGSPET TTGGNALKFY ASVRIDIRRI ASLKQNEQHI GNRAKAKVVK NKVAPPFREA EFDIMFGEGI SKEGEIIDYG VKLDIVDKSG AWLSYQDKKL GQGRENAKAL LKEDKALADE ITLKIKESIG SNEEIMPLPD EPLEEME // ID RECG_HELPY Reviewed; 623 AA. AC O26051; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=ATP-dependent DNA helicase RecG; DE EC=3.6.4.12; GN Name=recG; OrderedLocusNames=HP_1523; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Critical role in recombination and DNA repair. Helps CC process Holliday junction intermediates to mature products by CC catalyzing branch migration. Has a DNA unwinding activity CC characteristic of a DNA helicase with a 3'- to 5'- polarity. CC Unwinds branched duplex DNA (Y-DNA) (By similarity). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC -!- SIMILARITY: Belongs to the helicase family. RecG subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00541}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000255|PROSITE-ProRule:PRU00542}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08562.1; -; Genomic_DNA. DR PIR; C64710; C64710. DR RefSeq; NP_208313.1; NC_000915.1. DR RefSeq; WP_001158370.1; NC_018939.1. DR ProteinModelPortal; O26051; -. DR DIP; DIP-3433N; -. DR IntAct; O26051; 9. DR MINT; MINT-184313; -. DR STRING; 85962.HP1523; -. DR PaxDb; O26051; -. DR PRIDE; O26051; -. DR EnsemblBacteria; AAD08562; AAD08562; HP_1523. DR GeneID; 899768; -. DR KEGG; heo:C694_07890; -. DR KEGG; hpy:HP1523; -. DR PATRIC; 20594465; VBIHelPyl33062_1601. DR eggNOG; ENOG4105CB5; Bacteria. DR eggNOG; COG1200; LUCA. DR KO; K03655; -. DR OMA; CTIQEEN; -. DR OrthoDB; EOG6FNHKW; -. DR BioCyc; HPY:HP1523-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA damage; DNA recombination; KW DNA repair; DNA-binding; Helicase; Hydrolase; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 623 ATP-dependent DNA helicase RecG. FT /FTId=PRO_0000102143. FT DOMAIN 246 404 Helicase ATP-binding. FT {ECO:0000255|PROSITE-ProRule:PRU00541}. FT DOMAIN 422 578 Helicase C-terminal. FT {ECO:0000255|PROSITE-ProRule:PRU00542}. FT NP_BIND 259 266 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00541}. FT MOTIF 353 356 DEQH box. SQ SEQUENCE 623 AA; 71393 MW; 5871C51978F065B4 CRC64; MQETDNLLKT LNVKSLLEAL LVYTPKGYKD LNLLERFETG LSGVLEVGIL EKRNYAKVLK IFAYSKRFYK NLELVFFNYS AFHHSQFKTG ESLFIYGKLE QSSFNQAYII NTPKIITKFG KISLIFKKVK NHKKIQENLQ KLISLENLKK EGVKENIAHL LLEIFFPTPH FVKDFETNKN FPSQHLNALK YIEMLFYMKN LERKKLQFGA KIACPNNNER LKAFIASLPF KLTRDQQNAI KEIQNDLTSS IACKRLIIGD VGCGKTMVIL ASMVLTYPNK TLLMAPTSIL AKQLYNEALK FLPPYFEVEL LLGGSYKKRS NHLFETITHV VIGTQALLFD KRDLNEFALV ITDEQHRFGT KQRYQLEKMA SSKGNKPHSL QFSATPIPRT LALAKSAFVK TTMIREIPYP KEIETLVLHK RDFKIVMEKI SEEIAKNHQV IVVYPLVNES EKIPYLSLSE GASFWQKRFK KVYTTSGQDK NKEEVIEEFR ESGSILLATT LIEVGISLPR LSVMVILAPE RLGLATLHQL RGRVSRNGLK GYCFLCTIQE ENERLEKFAD ELDGFKIAEL DLEYRKSGDL LQGGEQSGNS FEYIDLAKDE NIIAEVKRDF LKAASVSRGT FEN // ID RIMP_HELPY Reviewed; 146 AA. AC O25687; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077}; GN Name=rimP {ECO:0000255|HAMAP-Rule:MF_01077}; GN OrderedLocusNames=HP_1046; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for maturation of 30S ribosomal subunits. CC {ECO:0000255|HAMAP-Rule:MF_01077}. CC -!- INTERACTION: CC P0A0X4:rpsL; NbExp=3; IntAct=EBI-7605525, EBI-7607319; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01077}. CC -!- SIMILARITY: Belongs to the RimP family. {ECO:0000255|HAMAP- CC Rule:MF_01077}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08091.1; -; Genomic_DNA. DR PIR; F64650; F64650. DR RefSeq; NP_207836.1; NC_000915.1. DR RefSeq; WP_000162267.1; NC_018939.1. DR ProteinModelPortal; O25687; -. DR DIP; DIP-3627N; -. DR IntAct; O25687; 13. DR MINT; MINT-160910; -. DR STRING; 85962.HP1046; -. DR PaxDb; O25687; -. DR PRIDE; O25687; -. DR EnsemblBacteria; AAD08091; AAD08091; HP_1046. DR GeneID; 899581; -. DR KEGG; heo:C694_05410; -. DR KEGG; hpy:HP1046; -. DR PATRIC; 20593429; VBIHelPyl33062_1095. DR eggNOG; ENOG4105K7D; Bacteria. DR eggNOG; COG0779; LUCA. DR KO; K09748; -. DR OMA; NHAIKSV; -. DR OrthoDB; EOG6NSGP3; -. DR BioCyc; HPY:HP1046-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.300.70; -; 1. DR HAMAP; MF_01077; RimP; 1. DR InterPro; IPR003728; Ribosome_maturation_RimP. DR InterPro; IPR028989; RimP_N. DR Pfam; PF02576; DUF150; 1. DR SUPFAM; SSF75420; SSF75420; 1. PE 1: Evidence at protein level; KW Complete proteome; Cytoplasm; Reference proteome; Ribosome biogenesis. FT CHAIN 1 146 Ribosome maturation factor RimP. FT /FTId=PRO_0000181878. SQ SEQUENCE 146 AA; 16543 MW; 9DD5A08C7B759BD4 CRC64; MTKKIEEKIG GVIESLGYLL YDVSLVKENE QHVLRVSLKN PNGAVSLDIC QQVSEIISPL LDVCDFIQDA YILEVSSMGL ERTLKTPKHF KLSLGEKVEV KLTNKESFQA VLKDANDLSA DFELEDHAIK SVEYKDLKKV KTLFEW // ID RDXA_HELPY Reviewed; 210 AA. AC O25608; O30585; Q9AHD6; Q9AHF7; Q9AHF8; DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 80. DE RecName: Full=Oxygen-insensitive NADPH nitroreductase; DE EC=1.-.-.-; GN Name=rdxA; OrderedLocusNames=HP_0954; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION AS A NITROREDUCTASE, AND RP EFFECT ON METRONIDAZOLE RESISTANCE. RC STRAIN=HP500; RX PubMed=9622362; DOI=10.1046/j.1365-2958.1998.00806.x; RA Goodwin A., Kersulyte D., Sisson G., Veldhuyzen van Zanten S.J.O., RA Berg D.E., Hoffman P.S.; RT "Metronidazole resistance in Helicobacter pylori is due to null RT mutations in a gene (rdxA) that encodes an oxygen-insensitive NADPH RT nitroreductase."; RL Mol. Microbiol. 28:383-393(1998). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS RESISTANT TO RP METRONIDAZOLE, AND MUTAGENESIS OF CYS-19 AND THR-49. RC STRAIN=69A, ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487, and RC ATCC 49503 / 60190; RX PubMed=11181392; DOI=10.1128/AAC.45.3.962-965.2001; RA Paul R., Postius S., Melchers K., Schafer K.P.; RT "Mutations of the Helicobacter pylori genes rdxA and pbp1 cause RT resistance against metronidazole and amoxicillin."; RL Antimicrob. Agents Chemother. 45:962-965(2001). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP INVOLVEMENT IN RESISTANCE TO METRONIDAZOLE. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=10543743; RA Debets-Ossenkopp Y.J., Pot R.G.J., van Westerloo D.J., Goodwin A., RA Vandenbroucke-Grauls C.M.J.E., Berg D.E., Hoffman P.S., Kusters J.G.; RT "Insertion of mini-IS605 and deletion of adjacent sequences in the RT nitroreductase (rdxA) gene cause metronidazole resistance in RT Helicobacter pylori NCTC11637."; RL Antimicrob. Agents Chemother. 43:2657-2662(1999). CC -!- FUNCTION: Reduction of a variety of nitroaromatic compounds using CC NADPH as source of reducing equivalents; two electrons are CC transferred (By similarity). Capable of reducing metronidazole; CC inactive RdxA renders the bacterium resistant to this compound. CC The reduction of metronidazole generates hydroxylamine, a potent CC mutagen and bactericide. {ECO:0000250, CC ECO:0000269|PubMed:9622362}. CC -!- CATALYTIC ACTIVITY: A 5,6,7,8-tetrahydropteridine + NAD(P)(+) = a CC 6,7-dihydropteridine + NAD(P)H. CC -!- SIMILARITY: Belongs to the nitroreductase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF012552; AAC46349.1; -; Genomic_DNA. DR EMBL; AF315501; AAK17124.1; -; Genomic_DNA. DR EMBL; AF315502; AAK17125.1; -; Genomic_DNA. DR EMBL; AF316109; AAK19260.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07997.1; -; Genomic_DNA. DR PIR; B64639; B64639. DR RefSeq; NP_207746.1; NC_000915.1. DR RefSeq; WP_000670110.1; NC_018939.1. DR PDB; 3QDL; X-ray; 2.00 A; A/B/C/D=1-210. DR PDBsum; 3QDL; -. DR ProteinModelPortal; O25608; -. DR DIP; DIP-3602N; -. DR IntAct; O25608; 2. DR MINT; MINT-179377; -. DR STRING; 85962.HP0954; -. DR DrugBank; DB00916; Metronidazole. DR PaxDb; O25608; -. DR PRIDE; O25608; -. DR EnsemblBacteria; AAD07997; AAD07997; HP_0954. DR GeneID; 899487; -. DR KEGG; heo:C694_04915; -. DR KEGG; hpy:HP0954; -. DR PATRIC; 20593221; VBIHelPyl33062_0992. DR eggNOG; ENOG4108RCM; Bacteria. DR eggNOG; COG0778; LUCA. DR OMA; DANHWME; -. DR OrthoDB; EOG6XQ3JZ; -. DR BioCyc; HPY:HP0954-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. PE 1: Evidence at protein level; KW 3D-structure; Antibiotic resistance; Complete proteome; NADP; KW Oxidoreductase; Reference proteome. FT CHAIN 1 210 Oxygen-insensitive NADPH nitroreductase. FT /FTId=PRO_0000321864. FT NP_BIND 150 155 NADP. {ECO:0000250}. FT VARIANT 14 14 N -> K (in strain: ATCC 43504 / NCTC FT 11637 / JCM 7653 / RPH 13487; resistant FT to metronidazole). FT VARIANT 31 31 T -> E (in strain: HP500, 69A and ATCC FT 43504 / NCTC 11637 / JCM 7653 / RPH FT 13487; resistant to metronidazole). FT VARIANT 36 36 I -> V (in strain: ATCC 43504 / NCTC FT 11637 / JCM 7653 / RPH 13487; resistant FT to metronidazole). FT VARIANT 53 53 H -> R (in strain: ATCC 49503). FT VARIANT 56 56 M -> I (in strain: ATCC 43504 / NCTC FT 11637 / JCM 7653 / RPH 13487; resistant FT to metronidazole). FT VARIANT 59 59 D -> N (in strain: HP500, 69A, ATCC 43504 FT / NCTC 11637 / JCM 7653 / RPH 13487; FT resistant to metronidazole and ATCC 49503 FT / 60190). FT VARIANT 63 93 KKQIAAHSYFNEEMIKSASALMVVCSLRPSE -> NHPSRN FT PKH (in strain: ATCC 43504 / NCTC 11637 / FT JCM 7653 / RPH 13487; resistant to FT metronidazole). FT VARIANT 64 64 K -> N (in strain: 69A). FT VARIANT 68 68 A -> V (in strain: HP500). FT VARIANT 90 90 R -> K (in strain: ATCC 49503 / 60190). FT VARIANT 97 97 H -> T (in strain: 69A). FT VARIANT 98 98 G -> S (in strain: ATCC 49503 / 60190). FT VARIANT 106 106 P -> S (in strain: 69A). FT VARIANT 131 131 R -> K (in strain: 69A). FT VARIANT 172 172 V -> I (in strain: 69A). FT VARIANT 183 183 A -> V (in strain: ATCC 49503 / 60190). FT MUTAGEN 19 19 C->Y: Loss of function and acquisition of FT resistance to metronidazole. FT {ECO:0000269|PubMed:11181392}. FT MUTAGEN 49 49 T->K: Loss of function and acquisition of FT resistance to metronidazole. FT {ECO:0000269|PubMed:11181392}. FT HELIX 6 15 {ECO:0000244|PDB:3QDL}. FT HELIX 30 41 {ECO:0000244|PDB:3QDL}. FT HELIX 46 48 {ECO:0000244|PDB:3QDL}. FT STRAND 52 57 {ECO:0000244|PDB:3QDL}. FT HELIX 60 67 {ECO:0000244|PDB:3QDL}. FT HELIX 71 73 {ECO:0000244|PDB:3QDL}. FT HELIX 74 79 {ECO:0000244|PDB:3QDL}. FT STRAND 81 88 {ECO:0000244|PDB:3QDL}. FT HELIX 91 94 {ECO:0000244|PDB:3QDL}. FT HELIX 131 154 {ECO:0000244|PDB:3QDL}. FT STRAND 157 161 {ECO:0000244|PDB:3QDL}. FT HELIX 166 171 {ECO:0000244|PDB:3QDL}. FT TURN 172 176 {ECO:0000244|PDB:3QDL}. FT STRAND 181 189 {ECO:0000244|PDB:3QDL}. FT STRAND 191 193 {ECO:0000244|PDB:3QDL}. FT HELIX 203 206 {ECO:0000244|PDB:3QDL}. FT STRAND 207 210 {ECO:0000244|PDB:3QDL}. SQ SEQUENCE 210 AA; 24068 MW; DFF15D2D102C002C CRC64; MKFLDQEKRR QLLNERHSCK MFDSHYEFSS TELEEIAEIA RLSPSSYNTQ PWHFVMVTDK DLKKQIAAHS YFNEEMIKSA SALMVVCSLR PSELLPHGHY MQNLYPESYK VRVIPSFAQM LGVRFNHSMQ RLESYILEQC YIAVGQICMG VSLMGLDSCI IGGFDPLKVG EVLEERINKP KIACLIALGK RVAEASQKSR KSKVDAITWL // ID RECR_HELPY Reviewed; 193 AA. AC P56214; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; GN Name=recR {ECO:0000255|HAMAP-Rule:MF_00017}; GN OrderedLocusNames=HP_0925; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: May play a role in DNA repair. It seems to be involved CC in an RecBC-independent recombinational process of DNA repair. It CC may act with RecF and RecO. {ECO:0000255|HAMAP-Rule:MF_00017}. CC -!- SIMILARITY: Belongs to the RecR family. {ECO:0000255|HAMAP- CC Rule:MF_00017}. CC -!- SIMILARITY: Contains 1 Toprim domain. {ECO:0000255|HAMAP- CC Rule:MF_00017}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07970.1; -; Genomic_DNA. DR PIR; E64635; E64635. DR RefSeq; NP_207717.1; NC_000915.1. DR RefSeq; WP_001099619.1; NC_018939.1. DR ProteinModelPortal; P56214; -. DR STRING; 85962.HP0925; -. DR PaxDb; P56214; -. DR PRIDE; P56214; -. DR EnsemblBacteria; AAD07970; AAD07970; HP_0925. DR GeneID; 899454; -. DR KEGG; heo:C694_04760; -. DR KEGG; hpy:HP0925; -. DR PATRIC; 20593151; VBIHelPyl33062_0961. DR eggNOG; ENOG4105F3K; Bacteria. DR eggNOG; COG0353; LUCA. DR KO; K06187; -. DR OMA; DVMAIEN; -. DR OrthoDB; EOG62NX85; -. DR BioCyc; HPY:HP0925-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00017; RecR; 1. DR InterPro; IPR000093; DNA_Rcmb_RecR. DR InterPro; IPR023627; Rcmb_RecR. DR InterPro; IPR023628; Rcmb_RecR_C4-type_Zn. DR InterPro; IPR015967; Rcmb_RecR_CS. DR InterPro; IPR006171; Toprim_domain. DR Pfam; PF02132; RecR; 1. DR SUPFAM; SSF111304; SSF111304; 1. DR TIGRFAMs; TIGR00615; recR; 1. DR PROSITE; PS01300; RECR; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 3: Inferred from homology; KW Complete proteome; DNA damage; DNA recombination; DNA repair; KW Metal-binding; Reference proteome; Zinc; Zinc-finger. FT CHAIN 1 193 Recombination protein RecR. FT /FTId=PRO_0000190330. FT DOMAIN 84 170 Toprim. {ECO:0000255|HAMAP- FT Rule:MF_00017}. FT ZN_FING 61 76 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00017}. SQ SEQUENCE 193 AA; 22008 MW; 586228674C625650 CRC64; MNTYKNSLNH FLNLVDCLEK IPNVGKKSAF KMAYHLGLEN PYLALKITHA LENALENLKT CSSCNALSES EVCEICSDES RQNSQLCMVL HPRDVFILED LKDFLGRYYV LNSIEEVDFN ALEKRLIEEN IKEIIFAFPP TLANDSLMLY IEDKLQHFHL TFTKIAQGVP TGVNFENIDS VSLSRAFNSR IKA // ID RHO_HELPY Reviewed; 438 AA. AC P56466; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 109. DE RecName: Full=Transcription termination factor Rho {ECO:0000255|HAMAP-Rule:MF_01884}; DE EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_01884}; DE AltName: Full=ATP-dependent helicase Rho {ECO:0000255|HAMAP-Rule:MF_01884}; GN Name=rho {ECO:0000255|HAMAP-Rule:MF_01884}; OrderedLocusNames=HP_0550; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Facilitates transcription termination by a mechanism CC that involves Rho binding to the nascent RNA, activation of Rho's CC RNA-dependent ATPase activity, and release of the mRNA from the CC DNA template. {ECO:0000255|HAMAP-Rule:MF_01884}. CC -!- SUBUNIT: Homohexamer. The homohexamer assembles into an open ring CC structure. {ECO:0000255|HAMAP-Rule:MF_01884}. CC -!- SIMILARITY: Belongs to the Rho family. {ECO:0000255|HAMAP- CC Rule:MF_01884}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07616.1; -; Genomic_DNA. DR PIR; F64588; F64588. DR RefSeq; NP_207345.1; NC_000915.1. DR RefSeq; WP_001004715.1; NC_018939.1. DR ProteinModelPortal; P56466; -. DR SMR; P56466; 53-373. DR DIP; DIP-3446N; -. DR IntAct; P56466; 4. DR MINT; MINT-182559; -. DR STRING; 85962.HP0550; -. DR PaxDb; P56466; -. DR PRIDE; P56466; -. DR EnsemblBacteria; AAD07616; AAD07616; HP_0550. DR GeneID; 898947; -. DR KEGG; heo:C694_02845; -. DR KEGG; hpy:HP0550; -. DR PATRIC; 20592375; VBIHelPyl33062_0576. DR eggNOG; ENOG4105C4P; Bacteria. DR eggNOG; COG1158; LUCA. DR KO; K03628; -. DR OMA; FLRAPDY; -. DR OrthoDB; EOG6N681W; -. DR BioCyc; HPY:HP0550-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008186; F:RNA-dependent ATPase activity; IEA:InterPro. DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01884; Rho; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR011129; Cold_shock_prot. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011112; Rho_N. DR InterPro; IPR011113; Rho_RNA-bd. DR InterPro; IPR004665; Term_rho. DR Pfam; PF00006; ATP-synt_ab; 1. DR Pfam; PF07498; Rho_N; 1. DR Pfam; PF07497; Rho_RNA_bind; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00357; CSP; 1. DR SMART; SM00959; Rho_N; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF68912; SSF68912; 1. DR TIGRFAMs; TIGR00767; rho; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Helicase; Hydrolase; KW Nucleotide-binding; Reference proteome; RNA-binding; Transcription; KW Transcription regulation; Transcription termination. FT CHAIN 1 438 Transcription termination factor Rho. FT /FTId=PRO_0000188966. FT NP_BIND 188 193 ATP. {ECO:0000255|HAMAP-Rule:MF_01884}. FT NP_BIND 200 205 ATP. {ECO:0000255|HAMAP-Rule:MF_01884}. FT BINDING 231 231 ATP. {ECO:0000255|HAMAP-Rule:MF_01884}. SQ SEQUENCE 438 AA; 49547 MW; D4D06E6CD1E300F6 CRC64; MNENAPTHKS SHKVKTHTPV SGYHIEDLRT YPTEKLLEIA NKLKVENPQE FKRQDLMFEI LKTQVTQGGY ILFTGILEIM PDGYGFLRGF DGSFSDGHND TYVSPSQIRR FALRNGDIVT GQVRSPKDQE KYYALLKIEA INYSPSDEIR NRPLFDNLTP LFPDEQIKLE YEPTKVTGRM LDLFSPVGKG QRALIVAPPR TGKTELMKEL AQGITSNHPE VELIILLVDE RPEEVTDMQR SVKGQVFSST FDLPANNHIR IAELVLERAK RRVEMGKDVV VLLDSITRLA RAYNAVTPSS GKVLSGGVDA NALHRPKRFF GAARNIEEGG SLTIIATALI ETGSRMDEVI FEEFKGTGNS EIVLARNIAD RRIYPAFDIL KSGTRKDNIL LGKDRLTKVW VLRNVMQQMD DIEALSFVYS KMQQTKDNEE FLNLMNEK // ID RIBA_HELPY Reviewed; 192 AA. AC O08315; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 17-FEB-2016, entry version 97. DE RecName: Full=GTP cyclohydrolase-2 {ECO:0000255|HAMAP-Rule:MF_00179}; DE EC=3.5.4.25 {ECO:0000255|HAMAP-Rule:MF_00179}; DE AltName: Full=GTP cyclohydrolase II {ECO:0000255|HAMAP-Rule:MF_00179}; GN Name=ribA {ECO:0000255|HAMAP-Rule:MF_00179}; GN OrderedLocusNames=HP_0802; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9574900; DOI=10.1007/s004300050062; RA Bereswill S., Fassbinder F., Voelzing C., Covacci A., Haas R., RA Kist M.; RT "Hemolytic properties and riboflavin synthesis of Helicobacter pylori: RT cloning and functional characterization of the ribA gene encoding GTP- RT cyclohydrolase II that confers hemolytic activity to Escherichia RT coli."; RL Med. Microbiol. Immunol. 186:177-187(1998). CC -!- FUNCTION: Catalyzes the conversion of GTP to 2,5-diamino-6- CC ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and CC pyrophosphate. {ECO:0000305|PubMed:9574900}. CC -!- CATALYTIC ACTIVITY: GTP + 3 H(2)O = formate + 2,5-diamino-6- CC hydroxy-4-(5-phospho-D-ribosylamino)pyrimidine + diphosphate. CC {ECO:0000255|HAMAP-Rule:MF_00179}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00179}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00179}; CC -!- PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 5-amino- CC 6-(D-ribitylamino)uracil from GTP: step 1/4. {ECO:0000255|HAMAP- CC Rule:MF_00179}. CC -!- SIMILARITY: Belongs to the GTP cyclohydrolase II family. CC {ECO:0000255|HAMAP-Rule:MF_00179}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07851.1; -; Genomic_DNA. DR EMBL; Y12062; CAA72785.1; -; Genomic_DNA. DR PIR; B64620; B64620. DR RefSeq; NP_207595.1; NC_000915.1. DR RefSeq; WP_000825074.1; NC_018939.1. DR PDB; 4RL4; X-ray; 2.20 A; A/B=1-192. DR PDBsum; 4RL4; -. DR ProteinModelPortal; O08315; -. DR DIP; DIP-3449N; -. DR IntAct; O08315; 1. DR MINT; MINT-160492; -. DR STRING; 85962.HP0802; -. DR PaxDb; O08315; -. DR PRIDE; O08315; -. DR EnsemblBacteria; AAD07851; AAD07851; HP_0802. DR GeneID; 899351; -. DR KEGG; heo:C694_04110; -. DR KEGG; hpy:HP0802; -. DR PATRIC; 20592891; VBIHelPyl33062_0834. DR eggNOG; ENOG4107T1C; Bacteria. DR eggNOG; COG0807; LUCA. DR KO; K01497; -. DR OMA; EILEYYH; -. DR OrthoDB; EOG679TK8; -. DR BioCyc; HPY:HP0802-MONOMER; -. DR UniPathway; UPA00275; UER00400. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003935; F:GTP cyclohydrolase II activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00179; RibA; 1. DR InterPro; IPR032677; GTP_cyclohydro_II. DR InterPro; IPR000926; RibA. DR Pfam; PF00925; GTP_cyclohydro2; 1. DR SUPFAM; SSF142695; SSF142695; 1. DR TIGRFAMs; TIGR00505; ribA; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; GTP-binding; Hydrolase; KW Metal-binding; Nucleotide-binding; Reference proteome; KW Riboflavin biosynthesis; Zinc. FT CHAIN 1 192 GTP cyclohydrolase-2. FT /FTId=PRO_0000151761. FT NP_BIND 50 54 GTP. {ECO:0000255|HAMAP-Rule:MF_00179}. FT NP_BIND 92 94 GTP. {ECO:0000255|HAMAP-Rule:MF_00179}. FT ACT_SITE 126 126 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00179}. FT ACT_SITE 128 128 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_00179}. FT METAL 55 55 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00179}. FT METAL 66 66 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00179}. FT METAL 68 68 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00179}. FT BINDING 114 114 GTP. {ECO:0000255|HAMAP-Rule:MF_00179}. FT BINDING 149 149 GTP. {ECO:0000255|HAMAP-Rule:MF_00179}. FT BINDING 154 154 GTP. {ECO:0000255|HAMAP-Rule:MF_00179}. FT CONFLICT 38 38 V -> I (in Ref. 2; CAA72785). FT {ECO:0000305}. FT CONFLICT 44 44 S -> P (in Ref. 2; CAA72785). FT {ECO:0000305}. FT CONFLICT 72 72 L -> F (in Ref. 2; CAA72785). FT {ECO:0000305}. FT CONFLICT 75 75 A -> P (in Ref. 2; CAA72785). FT {ECO:0000305}. FT CONFLICT 98 100 LFN -> YLT (in Ref. 2). {ECO:0000305}. FT CONFLICT 102 102 V -> S (in Ref. 2). {ECO:0000305}. FT CONFLICT 141 141 R -> H (in Ref. 2; CAA72785). FT {ECO:0000305}. FT STRAND 1 14 {ECO:0000244|PDB:4RL4}. FT STRAND 17 26 {ECO:0000244|PDB:4RL4}. FT STRAND 33 39 {ECO:0000244|PDB:4RL4}. FT STRAND 48 53 {ECO:0000244|PDB:4RL4}. FT HELIX 56 60 {ECO:0000244|PDB:4RL4}. FT TURN 66 70 {ECO:0000244|PDB:4RL4}. FT HELIX 71 82 {ECO:0000244|PDB:4RL4}. FT STRAND 84 89 {ECO:0000244|PDB:4RL4}. FT TURN 92 96 {ECO:0000244|PDB:4RL4}. FT HELIX 97 110 {ECO:0000244|PDB:4RL4}. FT HELIX 114 121 {ECO:0000244|PDB:4RL4}. FT HELIX 131 139 {ECO:0000244|PDB:4RL4}. FT STRAND 144 148 {ECO:0000244|PDB:4RL4}. FT HELIX 152 158 {ECO:0000244|PDB:4RL4}. FT TURN 159 161 {ECO:0000244|PDB:4RL4}. FT STRAND 162 167 {ECO:0000244|PDB:4RL4}. SQ SEQUENCE 192 AA; 21715 MW; 1F34B0E1FC3A73A4 CRC64; MKRLEVSNQA KLPTQFGEFY IQCFREKGSN GSKDHLVVFT PNFSQNPLVR LHSECLTGDA LGSQKCDCGG ALQMALERIS KEGGLVIYLR QEGRGIGLFN KVNAYALQDK GYDTIQANEM IGFKDDERDY SVAGEILEYY RIKKMRLLTN NPKKIAALEK YAEVTRESLI VCANEHNQGY LEVKKLKMGH LL // ID RIR2_HELPY Reviewed; 341 AA. AC P55983; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 107. DE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; DE EC=1.17.4.1; DE AltName: Full=Ribonucleotide reductase small subunit; GN Name=nrdB; OrderedLocusNames=HP_0364; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Provides the precursors necessary for DNA synthesis. CC Catalyzes the biosynthesis of deoxyribonucleotides from the CC corresponding ribonucleotides (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 2'-deoxyribonucleoside diphosphate + CC thioredoxin disulfide + H(2)O = ribonucleoside diphosphate + CC thioredoxin. {ECO:0000255|PROSITE-ProRule:PRU10014}. CC -!- COFACTOR: CC Name=Fe cation; Xref=ChEBI:CHEBI:24875; Evidence={ECO:0000250}; CC Note=Binds 2 iron ions per subunit. {ECO:0000250}; CC -!- PATHWAY: Genetic information processing; DNA replication. CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribonucleoside diphosphate reductase CC small chain family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07432.1; -; Genomic_DNA. DR PIR; D64565; D64565. DR RefSeq; NP_207162.1; NC_000915.1. DR RefSeq; WP_000453999.1; NC_018939.1. DR ProteinModelPortal; P55983; -. DR DIP; DIP-3348N; -. DR IntAct; P55983; 2. DR MINT; MINT-161059; -. DR STRING; 85962.HP0364; -. DR PaxDb; P55983; -. DR PRIDE; P55983; -. DR EnsemblBacteria; AAD07432; AAD07432; HP_0364. DR GeneID; 899218; -. DR KEGG; heo:C694_01845; -. DR KEGG; hpy:HP0364; -. DR PATRIC; 20591963; VBIHelPyl33062_0376. DR eggNOG; ENOG4105E05; Bacteria. DR eggNOG; COG0208; LUCA. DR KO; K00526; -. DR OMA; LEPMFLG; -. DR OrthoDB; EOG6J48J7; -. DR BioCyc; HPY:HP0364-MONOMER; -. DR UniPathway; UPA00326; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004748; F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor; IEA:UniProtKB-EC. DR GO; GO:0009186; P:deoxyribonucleoside diphosphate metabolic process; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniPathway. DR Gene3D; 1.10.620.20; -; 1. DR InterPro; IPR009078; Ferritin-like_SF. DR InterPro; IPR012348; RNR-rel. DR InterPro; IPR000358; RNR_small. DR InterPro; IPR030475; RNR_small_AS. DR PANTHER; PTHR23409; PTHR23409; 1. DR Pfam; PF00268; Ribonuc_red_sm; 1. DR PIRSF; PIRSF000355; NrdB; 1. DR SUPFAM; SSF47240; SSF47240; 1. DR PROSITE; PS00368; RIBORED_SMALL; 1. PE 3: Inferred from homology; KW Complete proteome; DNA replication; Iron; Metal-binding; KW Oxidoreductase; Reference proteome. FT CHAIN 1 341 Ribonucleoside-diphosphate reductase FT subunit beta. FT /FTId=PRO_0000190480. FT ACT_SITE 127 127 {ECO:0000255|PROSITE-ProRule:PRU10014}. FT METAL 89 89 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU10014}. FT METAL 120 120 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU10014}. FT METAL 120 120 Iron 2. {ECO:0000250}. FT METAL 123 123 Iron 1. {ECO:0000255|PROSITE- FT ProRule:PRU10014}. FT METAL 185 185 Iron 2. {ECO:0000250}. FT METAL 219 219 Iron 2. {ECO:0000250}. FT METAL 222 222 Iron 2. {ECO:0000250}. SQ SEQUENCE 341 AA; 39482 MW; EB52BA425F14EF6E CRC64; MEVSRKKIYN PNSTESVNER KIFGGNPTSM FDLNKIKYQW ADHLWKTMLA NTWFAEEVSM NDDKRDYLKL SAEEKIGYDR ALAQLIFMDS LQANNLIDNI NPFITSPEIN LCLVRQAYEE ALHSHAYAVM VESISANTEE IYDMWRNDMQ LKSKNDYIAQ VYMELAKNPT EENILKALFA NQILEGIYFY SGFSYFYTLA RSGKMLGSAQ MIRFIQRDEV THLILFQNMI NALRNERADL FTPQLINEVI GMFKKAVEIE ALWGDYITQG KILGLTSSLI EQYIQFLADS RLSKVGIAKV YGVQHPIKWV ESFSSFNEQR SNFFEARVSN YAKGSVSFDD F // ID RL10_HELPY Reviewed; 164 AA. AC P56036; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=50S ribosomal protein L10; GN Name=rplJ; OrderedLocusNames=HP_1200; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Forms part of the ribosomal stalk, playing a central CC role in the interaction of the ribosome with GTP-bound translation CC factors. {ECO:0000250}. CC -!- SUBUNIT: Part of the ribosomal stalk of the 50S ribosomal subunit. CC The N-terminus interacts with L11 and the large rRNA to form the CC base of the stalk. The C-terminus forms an elongated spine to CC which L12 dimers bind in a sequential fashion forming a multimeric CC L10(L12)X complex (By similarity). {ECO:0000250}. CC -!- INTERACTION: CC P55834:rplL; NbExp=3; IntAct=EBI-7694828, EBI-7696366; CC -!- SIMILARITY: Belongs to the ribosomal protein L10P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08246.1; -; Genomic_DNA. DR PIR; H64669; H64669. DR RefSeq; NP_207991.1; NC_000915.1. DR RefSeq; WP_001171739.1; NC_018939.1. DR ProteinModelPortal; P56036; -. DR DIP; DIP-3052N; -. DR IntAct; P56036; 4. DR MINT; MINT-164442; -. DR STRING; 85962.HP1200; -. DR PaxDb; P56036; -. DR PRIDE; P56036; -. DR EnsemblBacteria; AAD08246; AAD08246; HP_1200. DR GeneID; 899962; -. DR KEGG; heo:C694_06210; -. DR KEGG; hpy:HP1200; -. DR PATRIC; 20593759; VBIHelPyl33062_1257. DR eggNOG; ENOG4108VZM; Bacteria. DR eggNOG; COG0244; LUCA. DR KO; K02864; -. DR OMA; TWMAPIT; -. DR OrthoDB; EOG6DNTDR; -. DR BioCyc; HPY:HP1200-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0042254; P:ribosome biogenesis; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00362; Ribosomal_L10; 1. DR InterPro; IPR022973; Ribosomal_L10. DR InterPro; IPR002363; Ribosomal_L10_eubac_CS. DR InterPro; IPR001790; Ribosomal_L10P. DR Pfam; PF00466; Ribosomal_L10; 1. DR PROSITE; PS01109; RIBOSOMAL_L10; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 164 50S ribosomal protein L10. FT /FTId=PRO_0000154641. SQ SEQUENCE 164 AA; 18606 MW; 9915415D78AF5D97 CRC64; MQKQHQRQHK VELVANLKSQ FADAKALLIC DYKGLSVRKL EALRNKARNQ GIKVQVIKNT LAHIAMKETG YSDLDLKETN VFLWGGDQIA LSKLVFDFQK EHKDHFVLKA GLFDKESVSV AHVEAVSKLP SKEELMGMLL SVWTAPARYF VTGLDNLRKA KEEN // ID RIBB_HELPY Reviewed; 344 AA. AC O25484; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 99. DE RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; DE Short=DHBP synthase; DE EC=4.1.99.12; GN Name=ribB; OrderedLocusNames=HP_0804; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the conversion of D-ribulose 5-phosphate to CC formate and 3,4-dihydroxy-2-butanone 4-phosphate. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: D-ribulose 5-phosphate = formate + L-3,4- CC dihydroxybutan-2-one 4-phosphate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 2 divalent metal cations per subunit. Magnesium or CC manganese. {ECO:0000250}; CC -!- PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 2- CC hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step CC 1/1. CC -!- SIMILARITY: In the N-terminal section; belongs to the DHBP CC synthase family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the GTP CC cyclohydrolase II family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07852.1; -; Genomic_DNA. DR PIR; D64620; D64620. DR RefSeq; NP_207597.1; NC_000915.1. DR RefSeq; WP_000601458.1; NC_018939.1. DR ProteinModelPortal; O25484; -. DR STRING; 85962.HP0804; -. DR PaxDb; O25484; -. DR PRIDE; O25484; -. DR EnsemblBacteria; AAD07852; AAD07852; HP_0804. DR GeneID; 898852; -. DR KEGG; heo:C694_04120; -. DR KEGG; hpy:HP0804; -. DR PATRIC; 20592895; VBIHelPyl33062_0836. DR eggNOG; ENOG4105C66; Bacteria. DR eggNOG; COG0108; LUCA. DR eggNOG; COG0807; LUCA. DR KO; K14652; -. DR OMA; GAKTHDL; -. DR OrthoDB; EOG679TK8; -. DR BioCyc; HPY:HP0804-MONOMER; -. DR UniPathway; UPA00275; UER00399. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008686; F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.870.10; -; 1. DR HAMAP; MF_00180; RibB; 1. DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom. DR InterPro; IPR000422; DHBP_synthase_RibB. DR InterPro; IPR032677; GTP_cyclohydro_II. DR Pfam; PF00926; DHBP_synthase; 1. DR Pfam; PF00925; GTP_cyclohydro2; 1. DR SUPFAM; SSF142695; SSF142695; 1. DR SUPFAM; SSF55821; SSF55821; 1. DR TIGRFAMs; TIGR00506; ribB; 1. PE 3: Inferred from homology; KW Complete proteome; Lyase; Magnesium; Manganese; Metal-binding; KW Reference proteome; Riboflavin biosynthesis. FT CHAIN 1 344 3,4-dihydroxy-2-butanone 4-phosphate FT synthase. FT /FTId=PRO_0000151802. FT REGION 1 202 DHBP synthase. FT REGION 27 28 Substrate binding. {ECO:0000250}. FT REGION 139 143 Substrate binding. {ECO:0000250}. FT REGION 203 344 GTP cyclohydrolase II-like. FT METAL 28 28 Magnesium or manganese 1. {ECO:0000250}. FT METAL 28 28 Magnesium or manganese 2. {ECO:0000250}. FT METAL 142 142 Magnesium or manganese 2. {ECO:0000250}. FT BINDING 32 32 Substrate. {ECO:0000250}. FT BINDING 163 163 Substrate. {ECO:0000250}. FT SITE 125 125 Essential for catalytic activity. FT {ECO:0000250}. FT SITE 163 163 Essential for catalytic activity. FT {ECO:0000250}. SQ SEQUENCE 344 AA; 38972 MW; C38382FE3DE51F64 CRC64; MILKRVTEAL EAYKNGEMLI VMDDEDRENE GDLVLAGIFS TPEKINFMAT HARGLICVSL TKDLAKKFEL PPMVSVNDSN HETAFTVSID AKEARTGISA FERHLTIELL CKDTTKPSDF VRPGHIFPLI AKDGGVLART GHTEASVDLC KLAGLKPVSV ICEIMKEDGS MARRGDKFLS DFALKHNLKT LYVSDLISYR LENESLLKMF CQEEREFLKH QTQCYTFLDH QQKNHYAFKF KGAKTHDLAP LVRFHPIKED FDFLTTDAFE VFFKALEYLK HEGGYLIFMN THSKENNVVK DFGIGALVLK NLGIKDFRLL SSCEDRQYKA LSGFGLKLVE TISL // ID RIMO_HELPY Reviewed; 439 AA. AC O25434; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; DE Short=S12 MTTase {ECO:0000255|HAMAP-Rule:MF_01865}; DE Short=S12 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; DE EC=2.8.4.4 {ECO:0000255|HAMAP-Rule:MF_01865}; DE AltName: Full=Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; DE AltName: Full=Ribosome maturation factor RimO {ECO:0000255|HAMAP-Rule:MF_01865}; GN Name=rimO {ECO:0000255|HAMAP-Rule:MF_01865}; GN OrderedLocusNames=HP_0734; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the methylthiolation of an aspartic acid CC residue of ribosomal protein S12. {ECO:0000255|HAMAP- CC Rule:MF_01865}. CC -!- CATALYTIC ACTIVITY: L-aspartate-[ribosomal protein S12] + sulfur- CC (sulfur carrier) + 2 S-adenosyl-L-methionine = 3-methylthio-L- CC aspartate-[ribosomal protein S12] + S-adenosyl-L-homocysteine + CC (sulfur carrier) + L-methionine + 5'-deoxyadenosine. CC {ECO:0000255|HAMAP-Rule:MF_01865}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01865}; CC Note=Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01865}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01865}. CC -!- SIMILARITY: Belongs to the methylthiotransferase family. RimO CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01865}. CC -!- SIMILARITY: Contains 1 MTTase N-terminal domain. CC {ECO:0000255|HAMAP-Rule:MF_01865}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07780.1; -; Genomic_DNA. DR PIR; F64611; F64611. DR RefSeq; NP_207528.1; NC_000915.1. DR RefSeq; WP_001197349.1; NC_018939.1. DR ProteinModelPortal; O25434; -. DR STRING; 85962.HP0734; -. DR PaxDb; O25434; -. DR PRIDE; O25434; -. DR EnsemblBacteria; AAD07780; AAD07780; HP_0734. DR GeneID; 899326; -. DR KEGG; heo:C694_03770; -. DR KEGG; hpy:HP0734; -. DR PATRIC; 20592755; VBIHelPyl33062_0766. DR eggNOG; ENOG4105CBM; Bacteria. DR eggNOG; COG0621; LUCA. DR OMA; HYAYPTG; -. DR OrthoDB; EOG6P5ZD8; -. DR BioCyc; HPY:HP0734-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0018339; P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid; IEA:UniProtKB-HAMAP. DR GO; GO:0009451; P:RNA modification; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.80.30.20; -; 1. DR HAMAP; MF_01865; MTTase_RimO; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR005839; Methylthiotransferase. DR InterPro; IPR020612; Methylthiotransferase_CS. DR InterPro; IPR013848; Methylthiotransferase_N. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR005840; Ribosomal_S12_MeSTrfase_RimO. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF00919; UPF0004; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00089; TIGR00089; 1. DR TIGRFAMs; TIGR01125; TIGR01125; 1. DR PROSITE; PS51449; MTTASE_N; 1. DR PROSITE; PS01278; MTTASE_RADICAL; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; KW Metal-binding; Reference proteome; S-adenosyl-L-methionine; KW Transferase. FT CHAIN 1 439 Ribosomal protein S12 FT methylthiotransferase RimO. FT /FTId=PRO_0000374856. FT DOMAIN 7 119 MTTase N-terminal. {ECO:0000255|HAMAP- FT Rule:MF_01865}. FT METAL 16 16 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01865}. FT METAL 50 50 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01865}. FT METAL 82 82 Iron-sulfur (4Fe-4S). {ECO:0000255|HAMAP- FT Rule:MF_01865}. FT METAL 151 151 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01865}. FT METAL 155 155 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01865}. FT METAL 158 158 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01865}. SQ SEQUENCE 439 AA; 49634 MW; 59DDFC8721CC42EB CRC64; MQVKENKQLC LISLGCSKNL VDSEVMLGKL YNYTLTNDAK SADVILINTC GFIESAKQES IQTILNAAKD KKEGAILIAS GCLSERYKDE IKELIPEVDI FTGVGDYDKI DIMIAKKQNQ FSEQVFLSEH YNARIITGSS VHAYVKISEG CNQKCSFCAI PSFKGKLQSR ELDSILKEVE NLALKGYTDM TFIAQDSSSF LYDKGQKDGL IQLIRAIDKQ QALKSARILY LYPSSTTLEL IGAIESSPIF QNYFDMPIQH ISDSMLKKMR RNSSQAHHLK LLDAMKQVKE SFIRSTIIVG HPEENESEFE ELSAFLDEFQ FDRLNIFAFS AEENTHAYSL EKVPKKTINA RIKALNKIAL KHQNHSFKAL LNKPIKALVE NKEGEYFYKA RDLRWAPEVD GEILINDSEL TTPLKPGHYT IAPSEFKDNI LLAKVLSPF // ID RL18_HELPY Reviewed; 119 AA. AC P56043; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 80. DE RecName: Full=50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; GN Name=rplR {ECO:0000255|HAMAP-Rule:MF_01337}; GN OrderedLocusNames=HP_1303; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This is one of the proteins that binds and probably CC mediates the attachment of the 5S RNA into the large ribosomal CC subunit, where it forms part of the central protuberance. CC {ECO:0000255|HAMAP-Rule:MF_01337}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S CC rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs. CC {ECO:0000255|HAMAP-Rule:MF_01337}. CC -!- SIMILARITY: Belongs to the ribosomal protein L18P family. CC {ECO:0000255|HAMAP-Rule:MF_01337}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08344.1; -; Genomic_DNA. DR PIR; G64682; G64682. DR ProteinModelPortal; P56043; -. DR STRING; 85962.HP1303; -. DR PaxDb; P56043; -. DR PRIDE; P56043; -. DR EnsemblBacteria; AAD08344; AAD08344; HP_1303. DR PATRIC; 20593987; VBIHelPyl33062_1364. DR eggNOG; ENOG4105K4C; Bacteria. DR eggNOG; COG0256; LUCA. DR OMA; AVRLCVY; -. DR OrthoDB; EOG64NB48; -. DR BioCyc; HPY:HP1303-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01337_B; Ribosomal_L18_B; 1. DR InterPro; IPR005484; Ribosomal_L18. DR InterPro; IPR004389; Ribosomal_L18_bac-type. DR Pfam; PF00861; Ribosomal_L18p; 1. DR TIGRFAMs; TIGR00060; L18_bact; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 119 50S ribosomal protein L18. FT /FTId=PRO_0000131274. SQ SEQUENCE 119 AA; 13595 MW; 749F2B034B5243E6 CRC64; MMNAKALYKK KALRDRRKLR IKSKLLGDAL RPRVSVFRSN RYFYAQAIDD VKQSTITHID GRKMGFKNTQ EDAKKLGALF AEELKKAGIE RAVYDRNGYL YHGVVAAFAE SLRENGIAL // ID RIR1_HELPY Reviewed; 788 AA. AC P55982; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 108. DE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; DE EC=1.17.4.1; DE AltName: Full=Ribonucleotide reductase; GN Name=nrdA; OrderedLocusNames=HP_0680; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Provides the precursors necessary for DNA synthesis. CC Catalyzes the biosynthesis of deoxyribonucleotides from the CC corresponding ribonucleotides (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: 2'-deoxyribonucleoside diphosphate + CC thioredoxin disulfide + H(2)O = ribonucleoside diphosphate + CC thioredoxin. CC -!- ENZYME REGULATION: Under complex allosteric control mediated by CC deoxynucleoside triphosphates and ATP binding to separate CC specificity and activation sites on the alpha subunit. The type of CC nucleotide bound at the specificity site determines substrate CC preference. It seems probable that ATP makes the enzyme reduce CDP CC and UDP, dGTP favors ADP reduction and dTTP favors GDP reduction. CC Stimulated by ATP and inhibited by dATP binding to the activity CC site (By similarity). {ECO:0000250}. CC -!- PATHWAY: Genetic information processing; DNA replication. CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribonucleoside diphosphate reductase CC large chain family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 ATP-cone domain. {ECO:0000255|PROSITE- CC ProRule:PRU00492}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14884.1; -; Genomic_DNA. DR PIR; H64604; H64604. DR RefSeq; NP_207474.1; NC_000915.1. DR RefSeq; WP_000633984.1; NC_018939.1. DR ProteinModelPortal; P55982; -. DR DIP; DIP-3151N; -. DR IntAct; P55982; 5. DR MINT; MINT-174596; -. DR STRING; 85962.HP0680; -. DR PaxDb; P55982; -. DR PRIDE; P55982; -. DR EnsemblBacteria; AAD14884; AAD14884; HP_0680. DR GeneID; 899990; -. DR KEGG; heo:C694_03505; -. DR KEGG; hpy:HP0680; -. DR PATRIC; 20592643; VBIHelPyl33062_0710. DR eggNOG; ENOG4105BZH; Bacteria. DR eggNOG; COG0209; LUCA. DR KO; K00525; -. DR OMA; DNMESIA; -. DR OrthoDB; EOG6J48HC; -. DR BioCyc; HPY:HP0680-MONOMER; -. DR UniPathway; UPA00326; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004748; F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor; IEA:UniProtKB-EC. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniPathway. DR InterPro; IPR005144; ATP-cone_dom. DR InterPro; IPR013346; NrdE_NrdA. DR InterPro; IPR000788; RNR_lg_C. DR InterPro; IPR013509; RNR_lsu_N. DR InterPro; IPR008926; RNR_R1-su_N. DR Pfam; PF03477; ATP-cone; 1. DR Pfam; PF02867; Ribonuc_red_lgC; 1. DR Pfam; PF00317; Ribonuc_red_lgN; 1. DR PRINTS; PR01183; RIBORDTASEM1. DR SUPFAM; SSF48168; SSF48168; 1. DR TIGRFAMs; TIGR02506; NrdE_NrdA; 1. DR PROSITE; PS51161; ATP_CONE; 1. DR PROSITE; PS00089; RIBORED_LARGE; 1. PE 3: Inferred from homology; KW Allosteric enzyme; ATP-binding; Complete proteome; Disulfide bond; KW DNA replication; Nucleotide-binding; Oxidoreductase; KW Reference proteome. FT CHAIN 1 788 Ribonucleoside-diphosphate reductase FT subunit alpha. FT /FTId=PRO_0000187215. FT DOMAIN 2 92 ATP-cone. {ECO:0000255|PROSITE- FT ProRule:PRU00492}. FT REGION 12 18 Allosteric activator binding. FT {ECO:0000250}. FT REGION 215 216 Substrate binding. {ECO:0000250}. FT REGION 424 428 Substrate binding. {ECO:0000250}. FT REGION 659 663 Substrate binding. {ECO:0000250}. FT ACT_SITE 424 424 Proton acceptor. {ECO:0000250}. FT ACT_SITE 426 426 Cysteine radical intermediate. FT {ECO:0000250}. FT ACT_SITE 428 428 Proton acceptor. {ECO:0000250}. FT BINDING 6 6 Allosteric activator. {ECO:0000250}. FT BINDING 52 52 Allosteric activator. {ECO:0000250}. FT BINDING 200 200 Substrate. {ECO:0000250}. FT BINDING 244 244 Substrate; via amide nitrogen. FT {ECO:0000250}. FT SITE 216 216 Important for hydrogen atom transfer. FT {ECO:0000250}. FT SITE 223 223 Allosteric effector binding. FT {ECO:0000250}. FT SITE 253 253 Allosteric effector binding. FT {ECO:0000250}. FT SITE 497 497 Important for hydrogen atom transfer. FT {ECO:0000250}. FT SITE 763 763 Important for electron transfer. FT {ECO:0000250}. FT SITE 764 764 Important for electron transfer. FT {ECO:0000250}. FT SITE 784 784 Interacts with thioredoxin/glutaredoxin. FT {ECO:0000250}. FT SITE 787 787 Interacts with thioredoxin/glutaredoxin. FT {ECO:0000250}. FT DISULFID 216 497 Redox-active. {ECO:0000250}. SQ SEQUENCE 788 AA; 90160 MW; BF22559D3D3796D4 CRC64; MITVVKRNGR IEPLDITKIQ KYTKDATDNL EGVSQSELEV DARLQFRDKI TTEEIQQTLI KTAVDKIDID TPNWSFVASR LFLYDLYHKV SGFTGYRHLK EYFENAEEKG RILKGFKEKF DLEFLNSQIK PERDFQFNYL GIKTLYDRYL LKDANNNPIE LPQHMFMSIA MFLAQNEQEP NKIALEFYEV LSKFEAMCAT PTLANARTTK HQLSSCYIGS TPDNIEGIFD SYKEMALLSK YGGGIGWDFS LVRSIGSYID GHKNASAGTI PFLKIANDVA IAVDQLGTRK GAIAVYLEIW HIDVMEFIDL RKNSGDERRR AHDLFPALWV CDLFLKRVLE DAMWTLFDPY ECKDLTELYG QDFEKRYLEY EKDPKIIKEY INAKDLWKKI LMNYFEAGLP FLAFKDNANR CNPNAHAGII RSSNLCTEIF QNTAPNHYYM QIEYTDGTIE FFEEKELVTT DSNITKCANK LTSTDILKGK PIYIATKVAK DGQTAVCNLA SINLSKINTE EDIKRVVPIM VRLLDNVIDL NFYPNRKVKA TNLQNRAIGL GVMGEAQMLA EHQIAWGSKE HLEKIDALME QISYHAIDTS ANLAKEKGVY KDFENSEWSK GIFPIDKANN EALKLTEKGL FNHACDWQGL REKVKANGMR NGYLMAIAPT SSISILVGTT QTIEPIYKKK WFEENLSGLI PVVVPNLNVE TWNFYTSAYD IDAKDLIKAA AVRQKWIDQG QSLNVFLRIE NASGKTLHDI YTLAWKLGLK STYYLRSESP SIDEKSVLDR SVECFNCQ // ID RL11_HELPY Reviewed; 141 AA. AC P66052; P56037; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 67. DE RecName: Full=50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; GN Name=rplK {ECO:0000255|HAMAP-Rule:MF_00736}; GN OrderedLocusNames=HP_1202; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Forms part of the ribosomal stalk which helps the CC ribosome interact with GTP-bound translation factors. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC -!- SUBUNIT: Part of the ribosomal stalk of the 50S ribosomal subunit. CC Interacts with L10 and the large rRNA to form the base of the CC stalk. L10 forms an elongated spine to which L12 dimers bind in a CC sequential fashion forming a multimeric L10(L12)X complex. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC -!- PTM: One or more lysine residues are methylated. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC -!- SIMILARITY: Belongs to the ribosomal protein L11P family. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08248.1; -; Genomic_DNA. DR PIR; B64670; B64670. DR RefSeq; NP_207993.1; NC_000915.1. DR RefSeq; WP_001085997.1; NC_018939.1. DR ProteinModelPortal; P66052; -. DR SMR; P66052; 1-141. DR IntAct; P66052; 1. DR MINT; MINT-4076533; -. DR STRING; 85962.HP1202; -. DR PaxDb; P66052; -. DR PRIDE; P66052; -. DR EnsemblBacteria; AAD08248; AAD08248; HP_1202. DR GeneID; 899964; -. DR KEGG; heo:C694_06220; -. DR KEGG; hpy:HP1202; -. DR PATRIC; 20593763; VBIHelPyl33062_1259. DR eggNOG; ENOG4108UIK; Bacteria. DR eggNOG; COG0080; LUCA. DR KO; K02867; -. DR OMA; CKQFNAK; -. DR OrthoDB; EOG69PQ9D; -. DR BioCyc; HPY:HP1202-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.250; -; 1. DR Gene3D; 3.30.1550.10; -; 1. DR HAMAP; MF_00736; Ribosomal_L11; 1. DR InterPro; IPR000911; Ribosomal_L11/L12. DR InterPro; IPR006519; Ribosomal_L11_bac-typ. DR InterPro; IPR020783; Ribosomal_L11_C. DR InterPro; IPR020785; Ribosomal_L11_CS. DR InterPro; IPR020784; Ribosomal_L11_N. DR PANTHER; PTHR11661; PTHR11661; 1. DR Pfam; PF00298; Ribosomal_L11; 1. DR Pfam; PF03946; Ribosomal_L11_N; 1. DR SMART; SM00649; RL11; 1. DR SUPFAM; SSF46906; SSF46906; 1. DR SUPFAM; SSF54747; SSF54747; 1. DR TIGRFAMs; TIGR01632; L11_bact; 1. DR PROSITE; PS00359; RIBOSOMAL_L11; 1. PE 3: Inferred from homology; KW Complete proteome; Methylation; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 141 50S ribosomal protein L11. FT /FTId=PRO_0000104296. SQ SEQUENCE 141 AA; 15329 MW; D1BE047F62F5FAAB CRC64; MAKKVVGEIK LQIPAGKANP SPPVGPALGQ RGVNIMEFCK AFNERTKDMG SFNIPVIITV YQDKSFTFIT KKPPVTDLIK KASGVEKGSD NPLKNKIAKL THKQVEEIAQ LKMEDLNTST MEAAKKIVMG SARSMGVEVV D // ID RL20_HELPY Reviewed; 116 AA. AC P56045; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=50S ribosomal protein L20; GN Name=rplT; OrderedLocusNames=HP_0126; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for CC the in vitro assembly process of the 50S ribosomal subunit. It is CC not involved in the protein synthesizing functions of that subunit CC (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribosomal protein L20P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07194.1; -; Genomic_DNA. DR PIR; F64535; F64535. DR RefSeq; NP_206926.1; NC_000915.1. DR RefSeq; WP_001264177.1; NC_018939.1. DR ProteinModelPortal; P56045; -. DR SMR; P56045; 1-116. DR STRING; 85962.HP0126; -. DR PaxDb; P56045; -. DR PRIDE; P56045; -. DR EnsemblBacteria; AAD07194; AAD07194; HP_0126. DR GeneID; 900154; -. DR KEGG; heo:C694_00625; -. DR KEGG; hpy:HP0126; -. DR PATRIC; 20591469; VBIHelPyl33062_0134. DR eggNOG; ENOG4108YZX; Bacteria. DR eggNOG; COG0292; LUCA. DR KO; K02887; -. DR OMA; RKAKEQM; -. DR OrthoDB; EOG6CGCMB; -. DR BioCyc; HPY:HP0126-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000027; P:ribosomal large subunit assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:InterPro. DR HAMAP; MF_00382; Ribosomal_L20; 1. DR InterPro; IPR005813; Ribosomal_L20. DR PANTHER; PTHR10986; PTHR10986; 1. DR Pfam; PF00453; Ribosomal_L20; 1. DR PRINTS; PR00062; RIBOSOMALL20. DR TIGRFAMs; TIGR01032; rplT_bact; 1. DR PROSITE; PS00937; RIBOSOMAL_L20; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 116 50S ribosomal protein L20. FT /FTId=PRO_0000177167. SQ SEQUENCE 116 AA; 14032 MW; 9A778CA579A5401F CRC64; MRVKTGVVRR RRHKKVLKLA RGFYSGRRKH FRKAKEQLER SMYYAFRDRK QKKREFRSLW VVRINAACRM HNTSYSRFMH ALKVANIELD RKVLADMAMN DMQAFTSVLE SVKEHL // ID RHPA_HELPY Reviewed; 492 AA. AC O25029; DT 03-SEP-2014, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=DEAD-box ATP-dependent RNA helicase RhpA; DE EC=3.6.4.13; GN Name=rhpA; OrderedLocusNames=HP_0247, C694_01250; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RA Manolov A., Prihodko E., Larin A., Karpova I., Semashko T., RA Alexeev D., Kostrjukova E., Govorun V.; RT "Draft genome of Helicobacter pylori."; RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases. RN [3] RP INTERACTION WITH RNJ, AND SUBUNIT. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23093592; DOI=10.1093/nar/gks945; RA Redko Y., Aubert S., Stachowicz A., Lenormand P., Namane A., RA Darfeuille F., Thibonnier M., De Reuse H.; RT "A minimal bacterial RNase J-based degradosome is associated with RT translating ribosomes."; RL Nucleic Acids Res. 41:288-301(2013). CC -!- FUNCTION: DEAD-box RNA helicase probably involved in RNA CC degradation. Unwinds dsRNA in both 5'- and 3'-directions (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC -!- SUBUNIT: Homodimer (By similarity). Interacts with RNase J (rnj), CC might be a member of a minimal RNA degradosome complex. CC {ECO:0000250, ECO:0000269|PubMed:23093592}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Note=The RNaseJ-RhpA complex co- CC localizes with 70S ribosomes and polysomes; remains associated CC with ribosomes in the absence of RNase J. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the DEAD box helicase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00541}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000255|PROSITE-ProRule:PRU00542}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07315.1; -; Genomic_DNA. DR EMBL; CP003904; AFV41471.1; -; Genomic_DNA. DR PIR; G64550; G64550. DR RefSeq; NP_207045.1; NC_000915.1. DR RefSeq; WP_000422563.1; NC_018939.1. DR ProteinModelPortal; O25029; -. DR DIP; DIP-3203N; -. DR IntAct; O25029; 7. DR MINT; MINT-162893; -. DR STRING; 85962.HP0247; -. DR PaxDb; O25029; -. DR PRIDE; O25029; -. DR EnsemblBacteria; AAD07315; AAD07315; HP_0247. DR EnsemblBacteria; AFV41471; AFV41471; C694_01250. DR GeneID; 900197; -. DR KEGG; heo:C694_01250; -. DR KEGG; hpy:HP0247; -. DR PATRIC; 20591719; VBIHelPyl33062_0258. DR eggNOG; ENOG4105C1J; Bacteria. DR eggNOG; COG0513; LUCA. DR KO; K05592; -. DR OMA; FKKGQHK; -. DR OrthoDB; EOG6GBMBM; -. DR BioCyc; HPY:HP0247-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS51195; Q_MOTIF; 1. PE 1: Evidence at protein level; KW ATP-binding; Complete proteome; Cytoplasm; Helicase; Hydrolase; KW Nucleotide-binding; Reference proteome; RNA-binding. FT CHAIN 1 492 DEAD-box ATP-dependent RNA helicase RhpA. FT /FTId=PRO_0000430105. FT DOMAIN 51 220 Helicase ATP-binding. FT {ECO:0000255|PROSITE-ProRule:PRU00541}. FT DOMAIN 231 393 Helicase C-terminal. FT {ECO:0000255|PROSITE-ProRule:PRU00542}. FT NP_BIND 64 71 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00541}. FT MOTIF 20 48 Q motif. FT MOTIF 168 171 DEAD box. SQ SEQUENCE 492 AA; 55806 MW; C5E35D6C73BB21ED CRC64; MELNQPPLPT EIDGDAYHKP SFNDLGLKES VLKSVYEAGF TSPSPIQEKA IPAVLQGRDV IAQAQTGTGK TAAFALPIIN NLKNNHTIEA LVITPTRELA MQISDEIFKL GKHTRTKTVC VYGGQSVKKQ CEFIKKNPQV MIATPGRLLD HLKNERIHKF VPKVVVLDES DEMLDMGFLD DIEEIFDYLP SEAQILLFSA TMPEPIKRLA DKILENPIKI HIAPSNITNT DITQRFYVIN EHERAEAIMR LLDTQAPKKS IVFTRTKKEA DELHQFLASK NYKSTALHGD MDQRDRRSSI MAFKKNDADV LVATDVASRG LDISGVSHVF NYHLPLNTES YIHRIGRTGR AGKKGMAITL VTPLEYKELL RMQKEIDSEI ELFEIPTINE NQIIKTLHDA KVSEGIISLY EQLTEIFEPS QLVLKLLSLQ FETSKIGLNQ QEIDAIQNPK EKTPKPSNKK TPQHERARSF KKGQHRDRHP KTNHYSKKPK RR // ID RIMM_HELPY Reviewed; 184 AA. AC O25767; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; GN Name=rimM {ECO:0000255|HAMAP-Rule:MF_00014}; GN OrderedLocusNames=HP_1149; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: An accessory protein needed during the final step in the CC assembly of 30S ribosomal subunit, possibly for assembly of the CC head region. Probably interacts with S19. Essential for efficient CC processing of 16S rRNA. May be needed both before and after RbfA CC during the maturation of 16S rRNA. It has affinity for free CC ribosomal 30S subunits but not for 70S ribosomes. CC {ECO:0000255|HAMAP-Rule:MF_00014}. CC -!- SUBUNIT: Binds ribosomal protein S19. {ECO:0000255|HAMAP- CC Rule:MF_00014}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00014}. CC -!- DOMAIN: The PRC barrel domain binds ribosomal protein S19. CC {ECO:0000255|HAMAP-Rule:MF_00014}. CC -!- SIMILARITY: Belongs to the RimM family. {ECO:0000255|HAMAP- CC Rule:MF_00014}. CC -!- SIMILARITY: Contains 1 PRC barrel domain. {ECO:0000255|HAMAP- CC Rule:MF_00014}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08193.1; -; Genomic_DNA. DR PIR; E64663; E64663. DR RefSeq; NP_207940.1; NC_000915.1. DR RefSeq; WP_000254337.1; NC_018939.1. DR ProteinModelPortal; O25767; -. DR IntAct; O25767; 2. DR STRING; 85962.HP1149; -. DR PaxDb; O25767; -. DR PRIDE; O25767; -. DR EnsemblBacteria; AAD08193; AAD08193; HP_1149. DR GeneID; 899687; -. DR KEGG; heo:C694_05935; -. DR KEGG; hpy:HP1149; -. DR PATRIC; 20593649; VBIHelPyl33062_1203. DR eggNOG; ENOG4105V3S; Bacteria. DR eggNOG; COG0806; LUCA. DR KO; K02860; -. DR OMA; HSYEHAK; -. DR OrthoDB; EOG6H7FGT; -. DR BioCyc; HPY:HP1149-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:InterPro. DR GO; GO:0043022; F:ribosome binding; IEA:InterPro. DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0006364; P:rRNA processing; IEA:InterPro. DR Gene3D; 2.40.30.60; -; 1. DR HAMAP; MF_00014; Ribosome_mat_RimM; 1. DR InterPro; IPR011961; 16S_RimM. DR InterPro; IPR027275; PRC-brl_dom. DR InterPro; IPR011033; PRC_barrel-like. DR InterPro; IPR002676; RimM. DR InterPro; IPR009000; Transl_B-barrel. DR Pfam; PF05239; PRC; 1. DR Pfam; PF01782; RimM; 1. DR SUPFAM; SSF50346; SSF50346; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR TIGRFAMs; TIGR02273; 16S_RimM; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Cytoplasm; Reference proteome; KW Ribosome biogenesis. FT CHAIN 1 184 Ribosome maturation factor RimM. FT /FTId=PRO_0000163300. FT DOMAIN 101 180 PRC barrel. {ECO:0000255|HAMAP- FT Rule:MF_00014}. SQ SEQUENCE 184 AA; 20792 MW; BB25C2A140488110 CRC64; MVSMLLVGRI GKSVGLNGGL RLHLESDFPE CLKKGVKVSV APLNAFSCVS SFKEYIIHSY EHAKNLLFLE TIQTPEKAKE LTNLGLFMSE AESKKLCVLK EGEFFYCDLV GLSVVEENEI LGKVIEIQRI SQTDYFLVET TLNLVEKGLA KIFLIPYRDF YIQEILLQDK KITTHNAKTL LENS // ID RL21_HELPY Reviewed; 104 AA. AC P56046; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; GN Name=rplU {ECO:0000255|HAMAP-Rule:MF_01363}; GN OrderedLocusNames=HP_0296; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein binds to 23S rRNA in the presence of CC protein L20. {ECO:0000255|HAMAP-Rule:MF_01363}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L20. CC {ECO:0000255|HAMAP-Rule:MF_01363}. CC -!- SIMILARITY: Belongs to the ribosomal protein L21P family. CC {ECO:0000255|HAMAP-Rule:MF_01363}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07365.1; -; Genomic_DNA. DR PIR; H64556; H64556. DR RefSeq; NP_207094.1; NC_000915.1. DR RefSeq; WP_000119318.1; NC_018939.1. DR ProteinModelPortal; P56046; -. DR STRING; 85962.HP0296; -. DR PaxDb; P56046; -. DR PRIDE; P56046; -. DR EnsemblBacteria; AAD07365; AAD07365; HP_0296. DR GeneID; 898948; -. DR KEGG; heo:C694_01495; -. DR KEGG; hpy:HP0296; -. DR PATRIC; 20591819; VBIHelPyl33062_0307. DR eggNOG; ENOG4105KK9; Bacteria. DR eggNOG; COG0261; LUCA. DR KO; K02888; -. DR OMA; RQSYSYV; -. DR OrthoDB; EOG6TJ84X; -. DR BioCyc; HPY:HP0296-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01363; Ribosomal_L21; 1. DR InterPro; IPR028909; L21p-like. DR InterPro; IPR001787; Ribosomal_L21. DR InterPro; IPR018258; Ribosomal_L21_CS. DR Pfam; PF00829; Ribosomal_L21p; 1. DR SUPFAM; SSF141091; SSF141091; 1. DR TIGRFAMs; TIGR00061; L21; 1. DR PROSITE; PS01169; RIBOSOMAL_L21; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 104 50S ribosomal protein L21. FT /FTId=PRO_0000181003. SQ SEQUENCE 104 AA; 11808 MW; 5E50C0C0AF72122B CRC64; MSYAIFKHGG KQYKVVEGDI VLLDKMDKEP KALVELVEVL AVSKEGKLSC GKPFVNGAKI EAEVINEGRG KKVITFKKRR RKDSKTKRGF RRDFTRVRIT KIVA // ID RISB_HELPY Reviewed; 156 AA. AC O24854; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; DE Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178}; DE Short=LS {ECO:0000255|HAMAP-Rule:MF_00178}; DE Short=Lumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; DE EC=2.5.1.78 {ECO:0000255|HAMAP-Rule:MF_00178}; GN Name=ribH {ECO:0000255|HAMAP-Rule:MF_00178}; Synonyms=ribE; GN OrderedLocusNames=HP_0002; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the formation of 6,7-dimethyl-8- CC ribityllumazine by condensation of 5-amino-6-(D- CC ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. CC This is the penultimate step in the biosynthesis of riboflavin. CC {ECO:0000255|HAMAP-Rule:MF_00178}. CC -!- CATALYTIC ACTIVITY: 1-deoxy-L-glycero-tetrulose 4-phosphate + 5- CC amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(D- CC ribityl)lumazine + 2 H(2)O + phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00178}. CC -!- PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; CC riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D- CC ribitylamino)uracil: step 1/2. {ECO:0000255|HAMAP-Rule:MF_00178}. CC -!- SIMILARITY: Belongs to the DMRL synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00178}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07075.1; -; Genomic_DNA. DR PIR; B64520; B64520. DR RefSeq; NP_206804.1; NC_000915.1. DR RefSeq; WP_001165637.1; NC_018939.1. DR ProteinModelPortal; O24854; -. DR SMR; O24854; 1-155. DR DIP; DIP-3051N; -. DR IntAct; O24854; 4. DR MINT; MINT-164433; -. DR STRING; 85962.HP0002; -. DR PaxDb; O24854; -. DR PRIDE; O24854; -. DR EnsemblBacteria; AAD07075; AAD07075; HP_0002. DR GeneID; 898768; -. DR KEGG; heo:C694_00010; -. DR KEGG; hpy:HP0002; -. DR PATRIC; 20591191; VBIHelPyl33062_0002. DR eggNOG; ENOG4108UTT; Bacteria. DR eggNOG; COG0054; LUCA. DR KO; K00794; -. DR OMA; THEQAME; -. DR OrthoDB; EOG6RC3WC; -. DR BioCyc; HPY:HP0002-MONOMER; -. DR BRENDA; 2.5.1.78; 2604. DR UniPathway; UPA00275; UER00404. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009349; C:riboflavin synthase complex; IEA:InterPro. DR GO; GO:0000906; F:6,7-dimethyl-8-ribityllumazine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.960; -; 1. DR HAMAP; MF_00178; Lumazine_synth; 1. DR InterPro; IPR002180; DMRL_synthase. DR PANTHER; PTHR21058; PTHR21058; 1. DR Pfam; PF00885; DMRL_synthase; 1. DR SUPFAM; SSF52121; SSF52121; 1. DR TIGRFAMs; TIGR00114; lumazine-synth; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Riboflavin biosynthesis; KW Transferase. FT CHAIN 1 156 6,7-dimethyl-8-ribityllumazine synthase. FT /FTId=PRO_0000134763. FT REGION 57 59 5-amino-6-(D-ribitylamino)uracil binding. FT {ECO:0000255|HAMAP-Rule:MF_00178}. FT REGION 81 83 5-amino-6-(D-ribitylamino)uracil binding. FT {ECO:0000255|HAMAP-Rule:MF_00178}. FT REGION 86 87 1-deoxy-L-glycero-tetrulose 4-phosphate FT binding. {ECO:0000255|HAMAP- FT Rule:MF_00178}. FT ACT_SITE 89 89 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00178}. FT BINDING 23 23 5-amino-6-(D-ribitylamino)uracil. FT {ECO:0000255|HAMAP-Rule:MF_00178}. FT BINDING 114 114 5-amino-6-(D-ribitylamino)uracil; via FT amide nitrogen and carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00178}. FT BINDING 128 128 1-deoxy-L-glycero-tetrulose 4-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00178}. SQ SEQUENCE 156 AA; 17043 MW; CCC8674EA74AFAFB CRC64; MQIIEGKLQL QGNERVAILT SRFNHIITDR LQEGAMDCFK RHGGDEDLLD IVLVPGAYEL PFILDKLLES EKYDGVCVLG AIIRGGTPHF DYVSAEATKG IAHAMLKYSM PVSFGVLTTD NIEQAIERAG SKAGNKGFEA MSTLIELLSL CQTLKG // ID RL13_HELPY Reviewed; 141 AA. AC P56038; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; GN Name=rplM {ECO:0000255|HAMAP-Rule:MF_01366}; GN OrderedLocusNames=HP_0084; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein is one of the early assembly proteins of CC the 50S ribosomal subunit, although it is not seen to bind rRNA by CC itself. It is important during the early stages of 50S assembly. CC {ECO:0000255|HAMAP-Rule:MF_01366}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01366}. CC -!- SIMILARITY: Belongs to the ribosomal protein L13P family. CC {ECO:0000255|HAMAP-Rule:MF_01366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07154.1; -; Genomic_DNA. DR PIR; D64530; D64530. DR RefSeq; NP_206884.1; NC_000915.1. DR RefSeq; WP_000167671.1; NC_018939.1. DR ProteinModelPortal; P56038; -. DR SMR; P56038; 4-137. DR DIP; DIP-3161N; -. DR IntAct; P56038; 2. DR MINT; MINT-160646; -. DR STRING; 85962.HP0084; -. DR PaxDb; P56038; -. DR PRIDE; P56038; -. DR EnsemblBacteria; AAD07154; AAD07154; HP_0084. DR GeneID; 898946; -. DR KEGG; heo:C694_00410; -. DR KEGG; hpy:HP0084; -. DR PATRIC; 20591377; VBIHelPyl33062_0089. DR eggNOG; ENOG4108UM5; Bacteria. DR eggNOG; COG0102; LUCA. DR KO; K02871; -. DR OMA; YTPHMDC; -. DR OrthoDB; EOG628FBD; -. DR BioCyc; HPY:HP0084-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1180.10; -; 1. DR HAMAP; MF_01366; Ribosomal_L13; 1. DR InterPro; IPR005822; Ribosomal_L13. DR InterPro; IPR005823; Ribosomal_L13_bac-type. DR InterPro; IPR023563; Ribosomal_L13_CS. DR InterPro; IPR023564; Ribosomal_L13_dom. DR PANTHER; PTHR11545; PTHR11545; 1. DR Pfam; PF00572; Ribosomal_L13; 1. DR PIRSF; PIRSF002181; Ribosomal_L13; 1. DR SUPFAM; SSF52161; SSF52161; 1. DR TIGRFAMs; TIGR01066; rplM_bact; 1. DR PROSITE; PS00783; RIBOSOMAL_L13; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 141 50S ribosomal protein L13. FT /FTId=PRO_0000133739. SQ SEQUENCE 141 AA; 16112 MW; E3BA1AD0AE0F3725 CRC64; MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG DFVVVINANK VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY HLAVRGMLPK TKLGKAMIKK LKVYRDDKHP HTAQTSKKDA K // ID RL14_HELPY Reviewed; 122 AA. AC P56039; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 92. DE RecName: Full=50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; GN Name=rplN {ECO:0000255|HAMAP-Rule:MF_01367}; GN OrderedLocusNames=HP_1309; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds to 23S rRNA. Forms part of two intersubunit CC bridges in the 70S ribosome. {ECO:0000255|HAMAP-Rule:MF_01367}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with CC proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and CC together make contacts with the 16S rRNA in bridges B5 and B8. CC {ECO:0000255|HAMAP-Rule:MF_01367}. CC -!- INTERACTION: CC Q48271:copP; NbExp=3; IntAct=EBI-7497678, EBI-7497456; CC -!- SIMILARITY: Belongs to the ribosomal protein L14P family. CC {ECO:0000255|HAMAP-Rule:MF_01367}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08349.1; -; Genomic_DNA. DR PIR; E64683; E64683. DR RefSeq; NP_208101.1; NC_000915.1. DR RefSeq; WP_000616110.1; NC_018939.1. DR ProteinModelPortal; P56039; -. DR SMR; P56039; 1-122. DR DIP; DIP-3640N; -. DR IntAct; P56039; 1. DR MINT; MINT-165123; -. DR STRING; 85962.HP1309; -. DR PaxDb; P56039; -. DR PRIDE; P56039; -. DR EnsemblBacteria; AAD08349; AAD08349; HP_1309. DR GeneID; 900206; -. DR KEGG; heo:C694_06760; -. DR KEGG; hpy:HP1309; -. DR PATRIC; 20593999; VBIHelPyl33062_1370. DR eggNOG; ENOG4108UNN; Bacteria. DR eggNOG; COG0093; LUCA. DR KO; K02874; -. DR OMA; RTRYPTQ; -. DR OrthoDB; EOG6GBMJ6; -. DR BioCyc; HPY:HP1309-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.150.20; -; 1. DR HAMAP; MF_01367; Ribosomal_L14; 1. DR InterPro; IPR000218; Ribosomal_L14P. DR InterPro; IPR005745; Ribosomal_L14P_bac-type. DR InterPro; IPR019972; Ribosomal_L14P_CS. DR PANTHER; PTHR11761; PTHR11761; 1. DR Pfam; PF00238; Ribosomal_L14; 1. DR SMART; SM01374; Ribosomal_L14; 1. DR SUPFAM; SSF50193; SSF50193; 1. DR TIGRFAMs; TIGR01067; rplN_bact; 1. DR PROSITE; PS00049; RIBOSOMAL_L14; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 122 50S ribosomal protein L14. FT /FTId=PRO_0000128544. SQ SEQUENCE 122 AA; 13280 MW; FF8F6EDC30CAA4DA CRC64; MIQSFTRLNV ADNSGAKEIM CIKVLGGSHK RYASVGSVIV ASVKKAIPNG KVKRGQVVKA VVVRTKKEIQ RKNGSLVRFD DNAAVILDAK KDPVGTRIFG PVSREVRYAN FMKIISLAPE VV // ID RL1_HELPY Reviewed; 234 AA. AC P56029; P94849; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; GN Name=rplA {ECO:0000255|HAMAP-Rule:MF_01318}; GN OrderedLocusNames=HP_1201; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 57-234. RC STRAIN=Hp921023; RX PubMed=10456921; RA Hocking D., Webb E., Radcliff F., Rothel L., Taylor S., Pinczower G., RA Kapouleas C., Braley H., Lee A., Doidge C.; RT "Isolation of recombinant protective Helicobacter pylori antigens."; RL Infect. Immun. 67:4713-4719(1999). RN [3] RP SYNTHESIS, AND ANTIBACTERIAL ACTIVITY OF 2-20 AND 22-38. RX PubMed=10227288; DOI=10.1038/19439; RA Putsep K., Branden C.I., Boman H.G., Normark S.; RT "Antibacterial peptide from H. pylori."; RL Nature 398:671-672(1999). RN [4] RP STRUCTURE BY NMR OF 2-20. RA Lee K.H., Lee D.G., Park Y., Hahm K.-S., Kim Y.; RT "Structure of antimicrobial peptide, HP (2-20) and its analogues RT derived from Helicobacter pylori, as determined by 1H NMR RT spectroscopy."; RL Submitted (SEP-2004) to the PDB data bank. RN [5] RP STRUCTURE BY NMR OF 2-20, ANTIFUNGAL ACTIVITY, LYSIS MECHANISM, AND RP MUTAGENESIS OF 17-GLN--ASP-19. RX PubMed=16255716; DOI=10.1042/BJ20051574; RA Lee K.H., Lee D.G., Park Y., Kang D.-I., Shin S.Y., Hahm K.-S., RA Kim Y.; RT "Interactions between the plasma membrane and the antimicrobial RT peptide HP (2-20) and its analogues derived from Helicobacter RT pylori."; RL Biochem. J. 394:105-114(2006). CC -!- FUNCTION: Binds directly to 23S rRNA. The L1 stalk is quite mobile CC in the ribosome, and is involved in E site tRNA release. CC {ECO:0000255|HAMAP-Rule:MF_01318}. CC -!- FUNCTION: Protein L1 is also a translational repressor protein, it CC controls the translation of the L11 operon by binding to its mRNA. CC {ECO:0000255|HAMAP-Rule:MF_01318}. CC -!- FUNCTION: Peptides originating from the N-terminal end of L1 have CC antibacterial activity against bacteria such as E.coli and CC B.megaterium and modest antifungal activities. Has no effect on CC H.pylori itself. Peptides are not hemolytic against mammalian CC cells. These peptides may be released in the stomach during CC altruistic lysis to kill other fast growing bacteria. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. CC -!- MISCELLANEOUS: The antimicrobial peptide HP (2-20) forms a short CC alpha-helix. Increasing the amphiphilicity of the helix increases CC its antimicrobial activities. CC -!- SIMILARITY: Belongs to the ribosomal protein L1P family. CC {ECO:0000255|HAMAP-Rule:MF_01318}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08247.1; -; Genomic_DNA. DR EMBL; U86609; AAB47277.1; -; Genomic_DNA. DR PIR; A64670; A64670. DR RefSeq; NP_207992.1; NC_000915.1. DR RefSeq; WP_001085839.1; NC_018939.1. DR PDB; 1OT0; NMR; -; A=2-18. DR PDB; 1P0G; NMR; -; A=2-20. DR PDB; 1P0J; NMR; -; A=2-18. DR PDB; 1P0L; NMR; -; A=2-20. DR PDB; 1P0O; NMR; -; A=2-20. DR PDB; 1P5K; NMR; -; A=2-20. DR PDB; 1P5L; NMR; -; A=7-20. DR PDBsum; 1OT0; -. DR PDBsum; 1P0G; -. DR PDBsum; 1P0J; -. DR PDBsum; 1P0L; -. DR PDBsum; 1P0O; -. DR PDBsum; 1P5K; -. DR PDBsum; 1P5L; -. DR ProteinModelPortal; P56029; -. DR SMR; P56029; 7-227. DR STRING; 85962.HP1201; -. DR PaxDb; P56029; -. DR PRIDE; P56029; -. DR EnsemblBacteria; AAD08247; AAD08247; HP_1201. DR GeneID; 899963; -. DR KEGG; heo:C694_06215; -. DR KEGG; hpy:HP1201; -. DR PATRIC; 20593761; VBIHelPyl33062_1258. DR eggNOG; ENOG4105C64; Bacteria. DR eggNOG; COG0081; LUCA. DR KO; K02863; -. DR OMA; KIQNDKV; -. DR OrthoDB; EOG6FBX2G; -. DR BioCyc; HPY:HP1201-MONOMER; -. DR EvolutionaryTrace; P56029; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0042742; P:defense response to bacterium; IEA:UniProtKB-KW. DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.190.20; -; 2. DR Gene3D; 3.40.50.790; -; 1. DR HAMAP; MF_01318_B; Ribosomal_L1_B; 1. DR InterPro; IPR005878; Ribosom_L1_bac-type. DR InterPro; IPR002143; Ribosomal_L1. DR InterPro; IPR023674; Ribosomal_L1-like. DR InterPro; IPR028364; Ribosomal_L1/biogenesis. DR InterPro; IPR016094; Ribosomal_L1_2-a/b-sand. DR InterPro; IPR016095; Ribosomal_L1_3-a/b-sand. DR InterPro; IPR023673; Ribosomal_L1_CS. DR Pfam; PF00687; Ribosomal_L1; 1. DR PIRSF; PIRSF002155; Ribosomal_L1; 1. DR SUPFAM; SSF56808; SSF56808; 1. DR TIGRFAMs; TIGR01169; rplA_bact; 1. DR PROSITE; PS01199; RIBOSOMAL_L1; 1. PE 1: Evidence at protein level; KW 3D-structure; Antibiotic; Antimicrobial; Complete proteome; KW Reference proteome; Repressor; Ribonucleoprotein; Ribosomal protein; KW RNA-binding; rRNA-binding; Translation regulation; tRNA-binding. FT CHAIN 1 234 50S ribosomal protein L1. FT /FTId=PRO_0000125667. FT VARIANT 155 155 S -> T (in strain: Hp921023). FT MUTAGEN 17 19 QND->WNW: Increases antibacterial and FT antifungal activities 2-4 fold without an FT increase in hemolytic activies. FT {ECO:0000269|PubMed:16255716}. FT HELIX 6 18 {ECO:0000244|PDB:1OT0}. SQ SEQUENCE 234 AA; 25266 MW; BC7CECDB6B0B0EA8 CRC64; MAKKVFKRLE KLFSKIQNDK AYGVEQGVEV VKSLASAKFD ETVEVALRLG VDPRHADQMV RGAVVLPHGT GKKVRVAVFA KDIKQDEAKN AGADVVGGDD LAEEIKNGRI DFDMVIATPD MMAVVGKVGR ILGPKGLMPN PKTGTVTMDI AKAVSNAKSG QVNFRVDKKG NVHAPIGKAS FPEEKIKENM LELVKTINRL KPSSAKGKYI RNAALSLTMS PSVSLDAQEL MDIK // ID RL25_HELPY Reviewed; 178 AA. AC P56078; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; DE AltName: Full=General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; GN Name=rplY {ECO:0000255|HAMAP-Rule:MF_01334}; GN Synonyms=ctc {ECO:0000255|HAMAP-Rule:MF_01334}; GN OrderedLocusNames=HP_1496; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This is one of the proteins that binds to the 5S RNA in CC the ribosome where it forms part of the central protuberance. CC {ECO:0000255|HAMAP-Rule:MF_01334}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S CC rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S CC rRNA independently of L5 and L18. {ECO:0000255|HAMAP- CC Rule:MF_01334}. CC -!- SIMILARITY: Belongs to the ribosomal protein L25P family. CTC CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01334}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08537.1; -; Genomic_DNA. DR PIR; H64706; H64706. DR RefSeq; NP_208287.1; NC_000915.1. DR RefSeq; WP_000889331.1; NC_018939.1. DR ProteinModelPortal; P56078; -. DR DIP; DIP-3750N; -. DR IntAct; P56078; 4. DR MINT; MINT-179762; -. DR STRING; 85962.HP1496; -. DR PaxDb; P56078; -. DR PRIDE; P56078; -. DR EnsemblBacteria; AAD08537; AAD08537; HP_1496. DR GeneID; 899795; -. DR KEGG; heo:C694_07750; -. DR KEGG; hpy:HP1496; -. DR PATRIC; 20594403; VBIHelPyl33062_1570. DR eggNOG; ENOG4107TVT; Bacteria. DR eggNOG; COG1825; LUCA. DR KO; K02897; -. DR OMA; VENVNCA; -. DR OrthoDB; EOG6SZ1PC; -. DR BioCyc; HPY:HP1496-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0008097; F:5S rRNA binding; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.170.120.20; -; 1. DR Gene3D; 2.40.240.10; -; 1. DR HAMAP; MF_01334; Ribosomal_L25_CTC; 1. DR InterPro; IPR020056; Rbsml_L25/Gln-tRNA_synth_b-brl. DR InterPro; IPR029751; Ribosomal_L25. DR InterPro; IPR011035; Ribosomal_L25/Gln-tRNA_synth. DR InterPro; IPR020057; Ribosomal_L25_b-dom. DR InterPro; IPR001021; Ribosomal_L25_long. DR Pfam; PF01386; Ribosomal_L25p; 1. DR Pfam; PF14693; Ribosomal_TL5_C; 1. DR ProDom; PD012503; Ribosomal_L25; 1. DR SUPFAM; SSF50715; SSF50715; 1. DR TIGRFAMs; TIGR00731; bL25_bact_ctc; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 178 50S ribosomal protein L25. FT /FTId=PRO_0000181554. SQ SEQUENCE 178 AA; 19879 MW; B66E5C13A5BD0B9B CRC64; MLEGVIRESI TKANAKALKK DGYLIANVYG KGIENVNGAF KLNPFIKYLK EKKHLIFPVK LGDKTFEVVV QEYQKNPVTN ELIHVDLLAV TKGVKSKFKV PIKHQGTPVG LKNKGILMLS KKRISVECAP EHLPDHYLVD VAPLDVNESI LVRDLEKHEN VKILDHDSIA VIGVIKAK // ID RL27_HELPY Reviewed; 88 AA. AC P56050; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; GN Name=rpmA {ECO:0000255|HAMAP-Rule:MF_00539}; GN OrderedLocusNames=HP_0297; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L27P family. CC {ECO:0000255|HAMAP-Rule:MF_00539}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07366.1; -; Genomic_DNA. DR PIR; A64557; A64557. DR RefSeq; NP_207095.1; NC_000915.1. DR RefSeq; WP_000940618.1; NC_018939.1. DR ProteinModelPortal; P56050; -. DR SMR; P56050; 2-81. DR STRING; 85962.HP0297; -. DR PaxDb; P56050; -. DR PRIDE; P56050; -. DR EnsemblBacteria; AAD07366; AAD07366; HP_0297. DR GeneID; 899199; -. DR KEGG; heo:C694_01500; -. DR KEGG; hpy:HP0297; -. DR PATRIC; 20591821; VBIHelPyl33062_0308. DR eggNOG; ENOG4105K46; Bacteria. DR eggNOG; COG0211; LUCA. DR KO; K02899; -. DR OMA; NGRNNKK; -. DR OrthoDB; EOG6N94H6; -. DR BioCyc; HPY:HP0297-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00539; Ribosomal_L27; 1. DR InterPro; IPR001684; Ribosomal_L27. DR InterPro; IPR018261; Ribosomal_L27_CS. DR PANTHER; PTHR15893; PTHR15893; 1. DR Pfam; PF01016; Ribosomal_L27; 1. DR PRINTS; PR00063; RIBOSOMALL27. DR ProDom; PD003114; Ribosomal_L27; 1. DR TIGRFAMs; TIGR00062; L27; 1. DR PROSITE; PS00831; RIBOSOMAL_L27; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 88 50S ribosomal protein L27. FT /FTId=PRO_0000181099. SQ SEQUENCE 88 AA; 9778 MW; 29B0AE661A7951F0 CRC64; MAHKKGQGST QNNRDSAGRR LGVKKFGSEF VRAGNIIVRQ RGTKMHPGNN VGMGKDHTLY ALIDGVVKFE HKDRNRKKVS VVSQNFGE // ID RL24_HELPY Reviewed; 73 AA. AC P56049; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 90. DE RecName: Full=50S ribosomal protein L24 {ECO:0000255|HAMAP-Rule:MF_01326}; GN Name=rplX {ECO:0000255|HAMAP-Rule:MF_01326}; GN OrderedLocusNames=HP_1308; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of two assembly initiator proteins, it binds CC directly to the 5'-end of the 23S rRNA, where it nucleates CC assembly of the 50S subunit. {ECO:0000255|HAMAP-Rule:MF_01326}. CC -!- FUNCTION: One of the proteins that surrounds the polypeptide exit CC tunnel on the outside of the subunit. {ECO:0000255|HAMAP- CC Rule:MF_01326}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01326}. CC -!- SIMILARITY: Belongs to the ribosomal protein L24P family. CC {ECO:0000255|HAMAP-Rule:MF_01326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08348.1; -; Genomic_DNA. DR PIR; D64683; D64683. DR RefSeq; NP_208100.1; NC_000915.1. DR RefSeq; WP_000834232.1; NC_018939.1. DR ProteinModelPortal; P56049; -. DR STRING; 85962.HP1308; -. DR PaxDb; P56049; -. DR PRIDE; P56049; -. DR EnsemblBacteria; AAD08348; AAD08348; HP_1308. DR GeneID; 899034; -. DR KEGG; heo:C694_06755; -. DR KEGG; hpy:HP1308; -. DR PATRIC; 20593997; VBIHelPyl33062_1369. DR eggNOG; ENOG4105KAR; Bacteria. DR eggNOG; COG0198; LUCA. DR KO; K02895; -. DR OMA; EGCKVAK; -. DR OrthoDB; EOG6FFSDM; -. DR BioCyc; HPY:HP1308-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.30; -; 1. DR HAMAP; MF_01326_B; Ribosomal_L24_B; 1. DR InterPro; IPR005824; KOW. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR003256; Ribosomal_L24. DR InterPro; IPR005825; Ribosomal_L24/26_CS. DR InterPro; IPR008991; Translation_prot_SH3-like. DR Pfam; PF00467; KOW; 1. DR Pfam; PF17136; ribosomal_L24; 1. DR SMART; SM00739; KOW; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR TIGRFAMs; TIGR01079; rplX_bact; 1. DR PROSITE; PS01108; RIBOSOMAL_L24; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 73 50S ribosomal protein L24. FT /FTId=PRO_0000130664. SQ SEQUENCE 73 AA; 7905 MW; 25B352DF8646BFAB CRC64; MKSEIKKNDI VKVIAGDDKG KVAKVLAVLP KTSQVVVEGC KVVKKAIKPT DDNPKGGFIH KEKPMHISNV KKA // ID RL29_HELPY Reviewed; 66 AA. AC P56052; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 78. DE RecName: Full=50S ribosomal protein L29; GN Name=rpmC; OrderedLocusNames=HP_1311; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L29P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08362.1; -; Genomic_DNA. DR PIR; G64683; G64683. DR RefSeq; NP_208103.1; NC_000915.1. DR RefSeq; WP_000877884.1; NC_018939.1. DR ProteinModelPortal; P56052; -. DR IntAct; P56052; 2. DR STRING; 85962.HP1311; -. DR PaxDb; P56052; -. DR PRIDE; P56052; -. DR EnsemblBacteria; AAD08362; AAD08362; HP_1311. DR GeneID; 900285; -. DR KEGG; heo:C694_06770; -. DR KEGG; hpy:HP1311; -. DR PATRIC; 20594003; VBIHelPyl33062_1372. DR eggNOG; ENOG41084HJ; Bacteria. DR eggNOG; COG0255; LUCA. DR KO; K02904; -. DR OMA; YIDLNSK; -. DR OrthoDB; EOG6VTK8Z; -. DR BioCyc; HPY:HP1311-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.310; -; 1. DR HAMAP; MF_00374; Ribosomal_L29; 1. DR InterPro; IPR001854; Ribosomal_L29. DR InterPro; IPR018254; Ribosomal_L29_CS. DR Pfam; PF00831; Ribosomal_L29; 1. DR SUPFAM; SSF46561; SSF46561; 1. DR TIGRFAMs; TIGR00012; L29; 1. DR PROSITE; PS00579; RIBOSOMAL_L29; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 66 50S ribosomal protein L29. FT /FTId=PRO_0000130400. SQ SEQUENCE 66 AA; 7683 MW; 9C97E7C07F158EBE CRC64; MKYTELKDKS IKELEELLHA KKAELFELRV KLKAMQLSNP NEIKKARRNI ARINTAINAH YSSSVE // ID RL32_HELPY Reviewed; 48 AA. AC P56054; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 3. DT 11-NOV-2015, entry version 76. DE RecName: Full=50S ribosomal protein L32; GN Name=rpmF; OrderedLocusNames=HP_0200; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L32P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07272.1; -; Genomic_DNA. DR PIR; H64544; H64544. DR RefSeq; NP_206999.1; NC_000915.1. DR RefSeq; WP_000290428.1; NC_018939.1. DR ProteinModelPortal; P56054; -. DR STRING; 85962.HP0200; -. DR PaxDb; P56054; -. DR PRIDE; P56054; -. DR EnsemblBacteria; AAD07272; AAD07272; HP_0200. DR GeneID; 900135; -. DR KEGG; heo:C694_00995; -. DR KEGG; hpy:HP0200; -. DR PATRIC; 20591621; VBIHelPyl33062_0210. DR eggNOG; ENOG4105YQ2; Bacteria. DR eggNOG; COG0333; LUCA. DR KO; K02911; -. DR OrthoDB; EOG6VMTT4; -. DR BioCyc; HPY:HP0200-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00340; Ribosomal_L32; 1. DR InterPro; IPR002677; Ribosomal_L32p. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF01783; Ribosomal_L32p; 1. DR SUPFAM; SSF57829; SSF57829; 1. DR TIGRFAMs; TIGR01031; rpmF_bact; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT INIT_MET 1 1 Removed. {ECO:0000250}. FT CHAIN 2 48 50S ribosomal protein L32. FT /FTId=PRO_0000172348. SQ SEQUENCE 48 AA; 5661 MW; 0194018CB8038908 CRC64; MAVPDRRVSK TRAAKRRTHY SVKLAKPIKA KDGTWKLPHH INKFTKEY // ID RL33_HELPY Reviewed; 52 AA. AC P66217; P56055; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 60. DE RecName: Full=50S ribosomal protein L33; GN Name=rpmG; OrderedLocusNames=HP_1204; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L33P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08255.1; -; Genomic_DNA. DR PIR; D64670; D64670. DR RefSeq; NP_207996.1; NC_000915.1. DR RefSeq; WP_000865159.1; NC_018939.1. DR ProteinModelPortal; P66217; -. DR IntAct; P66217; 1. DR MINT; MINT-4076833; -. DR STRING; 85962.HP1204; -. DR PaxDb; P66217; -. DR PRIDE; P66217; -. DR EnsemblBacteria; AAD08255; AAD08255; HP_1204. DR GeneID; 898812; -. DR KEGG; heo:C694_06235; -. DR KEGG; hpy:HP1204; -. DR PATRIC; 20593771; VBIHelPyl33062_1262. DR eggNOG; ENOG41086AR; Bacteria. DR eggNOG; COG0267; LUCA. DR KO; K02913; -. DR OMA; ECRERNY; -. DR OrthoDB; EOG60KNBM; -. DR BioCyc; HPY:HP1204-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00294; Ribosomal_L33; 1. DR InterPro; IPR001705; Ribosomal_L33. DR InterPro; IPR018264; Ribosomal_L33_CS. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF00471; Ribosomal_L33; 1. DR SUPFAM; SSF57829; SSF57829; 1. DR TIGRFAMs; TIGR01023; rpmG_bact; 1. DR PROSITE; PS00582; RIBOSOMAL_L33; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 52 50S ribosomal protein L33. FT /FTId=PRO_0000170168. SQ SEQUENCE 52 AA; 6066 MW; 66BAC829C68659D6 CRC64; MKVKIGLKCS DCEDINYSTT KNAKTNTEKL ELKKFCPREN KHTLHKEIKL KS // ID RL15_HELPY Reviewed; 133 AA. AC P56040; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 06-DEC-2005, sequence version 2. DT 11-MAY-2016, entry version 88. DE RecName: Full=50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; GN Name=rplO {ECO:0000255|HAMAP-Rule:MF_01341}; GN OrderedLocusNames=HP_1301; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_01341}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01341}. CC -!- SIMILARITY: Belongs to the ribosomal protein L15P family. CC {ECO:0000255|HAMAP-Rule:MF_01341}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08342.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08342.1; ALT_INIT; Genomic_DNA. DR PIR; E64682; E64682. DR RefSeq; NP_208093.2; NC_000915.1. DR RefSeq; WP_000522167.1; NC_018939.1. DR ProteinModelPortal; P56040; -. DR SMR; P56040; 6-73. DR DIP; DIP-3703N; -. DR IntAct; P56040; 5. DR MINT; MINT-163293; -. DR STRING; 85962.HP1301; -. DR PaxDb; P56040; -. DR PRIDE; P56040; -. DR EnsemblBacteria; AAD08342; AAD08342; HP_1301. DR GeneID; 898863; -. DR KEGG; heo:C694_06720; -. DR KEGG; hpy:HP1301; -. DR PATRIC; 20593983; VBIHelPyl33062_1362. DR eggNOG; ENOG4108UZ0; Bacteria. DR eggNOG; COG0200; LUCA. DR KO; K02876; -. DR OMA; CHFPLYI; -. DR OrthoDB; EOG6CGCM5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01341; Ribosomal_L15; 1. DR InterPro; IPR030878; Ribosomal_L15. DR InterPro; IPR005749; Ribosomal_L15_bac-type. DR InterPro; IPR021131; Ribosomal_L18e/L15P. DR PANTHER; PTHR12934; PTHR12934; 1. DR Pfam; PF00828; Ribosomal_L27A; 1. DR SUPFAM; SSF52080; SSF52080; 1. DR TIGRFAMs; TIGR01071; rplO_bact; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 133 50S ribosomal protein L15. FT /FTId=PRO_0000104732. SQ SEQUENCE 133 AA; 14661 MW; D255DD9BBB3EB8A3 CRC64; MGLENLKPAK GSVKKIKRVG RGQGSGMGKT ATRGGKGQTA RTGYKAKRGF EGGQQPLQRR LPKIGFRTKD SHIYSINVEK NEAIKNLEEI TFSSLRALHH FPLYIEGVKL IGKDAKNLAS KIKDERIKTS GQK // ID RL19_HELPY Reviewed; 118 AA. AC P56044; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 80. DE RecName: Full=50S ribosomal protein L19; GN Name=rplS; OrderedLocusNames=HP_1147; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein is located at the 30S-50S ribosomal subunit CC interface and may play a role in the structure and function of the CC aminoacyl-tRNA binding site. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribosomal protein L19P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08191.1; -; Genomic_DNA. DR PIR; C64663; C64663. DR RefSeq; NP_207938.1; NC_000915.1. DR RefSeq; WP_000797699.1; NC_018939.1. DR ProteinModelPortal; P56044; -. DR IntAct; P56044; 3. DR STRING; 85962.HP1147; -. DR PaxDb; P56044; -. DR PRIDE; P56044; -. DR EnsemblBacteria; AAD08191; AAD08191; HP_1147. DR GeneID; 899685; -. DR KEGG; heo:C694_05925; -. DR KEGG; hpy:HP1147; -. DR PATRIC; 20593645; VBIHelPyl33062_1201. DR eggNOG; ENOG4108YY1; Bacteria. DR eggNOG; COG0335; LUCA. DR KO; K02884; -. DR OMA; EAEQCAK; -. DR OrthoDB; EOG6DZF5W; -. DR BioCyc; HPY:HP1147-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00402; Ribosomal_L19; 1. DR InterPro; IPR001857; Ribosomal_L19. DR InterPro; IPR018257; Ribosomal_L19_CS. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR15680; PTHR15680; 1. DR Pfam; PF01245; Ribosomal_L19; 1. DR PIRSF; PIRSF002191; Ribosomal_L19; 1. DR PRINTS; PR00061; RIBOSOMALL19. DR SUPFAM; SSF50104; SSF50104; 1. DR TIGRFAMs; TIGR01024; rplS_bact; 1. DR PROSITE; PS01015; RIBOSOMAL_L19; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 118 50S ribosomal protein L19. FT /FTId=PRO_0000163465. SQ SEQUENCE 118 AA; 13600 MW; A151AD3A165A233F CRC64; MKNRYIQQFE DAQLKDKTMP AFKAGDTLRL GITIKEGEKT RTQYFEGVCI AIRGNGVDKT FCVRKIGANN IGVEKIFPFY SESLASVEVL RVGRVRRAKL YYLRDRRGKA ARIKEVRH // ID RL23_HELPY Reviewed; 93 AA. AC P66119; P56048; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 63. DE RecName: Full=50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; GN Name=rplW {ECO:0000255|HAMAP-Rule:MF_01369}; GN OrderedLocusNames=HP_1317; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the early assembly proteins it binds 23S rRNA. CC One of the proteins that surrounds the polypeptide exit tunnel on CC the outside of the ribosome. Forms the main docking site for CC trigger factor binding to the ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01369}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L29, CC and trigger factor when it is bound to the ribosome. CC {ECO:0000255|HAMAP-Rule:MF_01369}. CC -!- SIMILARITY: Belongs to the ribosomal protein L23P family. CC {ECO:0000255|HAMAP-Rule:MF_01369}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08356.1; -; Genomic_DNA. DR PIR; E64684; E64684. DR RefSeq; NP_208109.1; NC_000915.1. DR RefSeq; WP_000763613.1; NC_018939.1. DR ProteinModelPortal; P66119; -. DR IntAct; P66119; 2. DR STRING; 85962.HP1317; -. DR PaxDb; P66119; -. DR PRIDE; P66119; -. DR EnsemblBacteria; AAD08356; AAD08356; HP_1317. DR GeneID; 898749; -. DR KEGG; heo:C694_06800; -. DR KEGG; hpy:HP1317; -. DR PATRIC; 20594015; VBIHelPyl33062_1378. DR eggNOG; ENOG4105KZZ; Bacteria. DR eggNOG; COG0089; LUCA. DR KO; K02892; -. DR OMA; QTSPRMT; -. DR OrthoDB; EOG6HF62P; -. DR BioCyc; HPY:HP1317-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.330; -; 1. DR HAMAP; MF_01369_B; Ribosomal_L23_B; 1. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom. DR InterPro; IPR013025; Ribosomal_L25/23. DR Pfam; PF00276; Ribosomal_L23; 1. DR SUPFAM; SSF54189; SSF54189; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 93 50S ribosomal protein L23. FT /FTId=PRO_0000129411. SQ SEQUENCE 93 AA; 10454 MW; CCD545345B4C2BBA CRC64; MADIMDIKSI LYTEKSLGLQ EKGVLVVQTA QNVTKNQLKE VFKTYFGFEP LKINSLKQEG KVKRFRGKLG QRKSFKKFYV KVPEGASIAA LGA // ID RL34_HELPY Reviewed; 44 AA. AC P66246; P56056; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 13-APR-2016, entry version 61. DE RecName: Full=50S ribosomal protein L34; GN Name=rpmH; OrderedLocusNames=HP_1447; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L34P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08495.1; -; Genomic_DNA. DR PIR; G64700; G64700. DR RefSeq; NP_208238.1; NC_000915.1. DR RefSeq; WP_001847286.1; NC_018939.1. DR ProteinModelPortal; P66246; -. DR SMR; P66246; 1-44. DR STRING; 85962.HP1447; -. DR PaxDb; P66246; -. DR PRIDE; P66246; -. DR EnsemblBacteria; AAD08495; AAD08495; HP_1447. DR GeneID; 899847; -. DR KEGG; heo:C694_07495; -. DR KEGG; hpy:HP1447; -. DR PATRIC; 20594301; VBIHelPyl33062_1519. DR eggNOG; ENOG4105VG0; Bacteria. DR eggNOG; COG0230; LUCA. DR KO; K02914; -. DR OrthoDB; EOG6DZF71; -. DR BioCyc; HPY:HP1447-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00391; Ribosomal_L34; 1. DR InterPro; IPR000271; Ribosomal_L34. DR InterPro; IPR020939; Ribosomal_L34_CS. DR PANTHER; PTHR14503; PTHR14503; 1. DR Pfam; PF00468; Ribosomal_L34; 1. DR ProDom; PD003101; Ribosomal_L34; 1. DR TIGRFAMs; TIGR01030; rpmH_bact; 1. DR PROSITE; PS00784; RIBOSOMAL_L34; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 44 50S ribosomal protein L34. FT /FTId=PRO_0000187392. SQ SEQUENCE 44 AA; 5246 MW; 452EEEC2EBE59F35 CRC64; MKRTYQPHNT PRKRTHGFLV RMKTKNGRKV INARRAKGRK KLSV // ID RL16_HELPY Reviewed; 141 AA. AC P56041; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=50S ribosomal protein L16 {ECO:0000255|HAMAP-Rule:MF_01342}; GN Name=rplP {ECO:0000255|HAMAP-Rule:MF_01342}; GN OrderedLocusNames=HP_1312; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds 23S rRNA and is also seen to make contacts with CC the A and possibly P site tRNAs. {ECO:0000255|HAMAP- CC Rule:MF_01342}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01342}. CC -!- SIMILARITY: Belongs to the ribosomal protein L16P family. CC {ECO:0000255|HAMAP-Rule:MF_01342}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08351.1; -; Genomic_DNA. DR RefSeq; NP_208104.1; NC_000915.1. DR RefSeq; WP_000928961.1; NC_018939.1. DR ProteinModelPortal; P56041; -. DR SMR; P56041; 1-133. DR DIP; DIP-3634N; -. DR IntAct; P56041; 9. DR MINT; MINT-162847; -. DR STRING; 85962.HP1312; -. DR PaxDb; P56041; -. DR PRIDE; P56041; -. DR EnsemblBacteria; AAD08351; AAD08351; HP_1312. DR GeneID; 900309; -. DR KEGG; heo:C694_06775; -. DR KEGG; hpy:HP1312; -. DR PATRIC; 20594005; VBIHelPyl33062_1373. DR eggNOG; ENOG4108R70; Bacteria. DR eggNOG; COG0197; LUCA. DR KO; K02878; -. DR OMA; KGAVEYW; -. DR OrthoDB; EOG6WHNWS; -. DR BioCyc; HPY:HP1312-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1170.10; -; 1. DR HAMAP; MF_01342; Ribosomal_L16; 1. DR InterPro; IPR016180; Ribosomal_L10e/L16. DR InterPro; IPR000114; Ribosomal_L16. DR InterPro; IPR020798; Ribosomal_L16_CS. DR PANTHER; PTHR12220; PTHR12220; 1. DR Pfam; PF00252; Ribosomal_L16; 1. DR PRINTS; PR00060; RIBOSOMALL16. DR SUPFAM; SSF54686; SSF54686; 1. DR TIGRFAMs; TIGR01164; rplP_bact; 1. DR PROSITE; PS00586; RIBOSOMAL_L16_1; 1. DR PROSITE; PS00701; RIBOSOMAL_L16_2; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA-binding. FT CHAIN 1 141 50S ribosomal protein L16. FT /FTId=PRO_0000062115. SQ SEQUENCE 141 AA; 16046 MW; 1774627F9970A4AF CRC64; MLMPKRTKYR KQMKGRNRGK AHRGNSIAFG DIAIKAIEHG RIDSRQIESA RVAMTRHIKR AGKVWIRVFP DKPLTAKPLE TRMGKGKGSV EKWVMNIKPG RIVYEMLGIE EGLAREALAL AQSKLPFKTK IVTCESENEI Y // ID RL17_HELPY Reviewed; 116 AA. AC P56042; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; GN Name=rplQ {ECO:0000255|HAMAP-Rule:MF_01368}; GN OrderedLocusNames=HP_1292; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L32. CC {ECO:0000255|HAMAP-Rule:MF_01368}. CC -!- SIMILARITY: Belongs to the ribosomal protein L17P family. CC {ECO:0000255|HAMAP-Rule:MF_01368}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08335.1; -; Genomic_DNA. DR PIR; D64681; D64681. DR RefSeq; NP_208084.1; NC_000915.1. DR RefSeq; WP_001216119.1; NC_018939.1. DR ProteinModelPortal; P56042; -. DR IntAct; P56042; 2. DR STRING; 85962.HP1292; -. DR PaxDb; P56042; -. DR PRIDE; P56042; -. DR EnsemblBacteria; AAD08335; AAD08335; HP_1292. DR GeneID; 900361; -. DR KEGG; heo:C694_06675; -. DR KEGG; hpy:HP1292; -. DR PATRIC; 20593965; VBIHelPyl33062_1353. DR eggNOG; ENOG4108ZT0; Bacteria. DR eggNOG; COG0203; LUCA. DR KO; K02879; -. DR OMA; KTVQRRG; -. DR OrthoDB; EOG6GR3GR; -. DR BioCyc; HPY:HP1292-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1030.10; -; 1. DR HAMAP; MF_01368; Ribosomal_L17; 1. DR InterPro; IPR000456; Ribosomal_L17. DR PANTHER; PTHR14413; PTHR14413; 1. DR Pfam; PF01196; Ribosomal_L17; 1. DR SUPFAM; SSF64263; SSF64263; 1. DR TIGRFAMs; TIGR00059; L17; 1. DR PROSITE; PS01167; RIBOSOMAL_L17; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 116 50S ribosomal protein L17. FT /FTId=PRO_0000175528. SQ SEQUENCE 116 AA; 13364 MW; EBD87890E2F2E4B6 CRC64; MRHKHGYRKL GRTSSHRKAL LKNLAIALIE HNKIETGIYK AKELRSYIEK LTTAARVGDF NAHRHVFAYL QNKEATHKLV TEIAPKYAQR NGGYTRIQRT TFRRGDASTL ATIEFV // ID RL22_HELPY Reviewed; 122 AA. AC P56047; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=50S ribosomal protein L22 {ECO:0000255|HAMAP-Rule:MF_01331}; GN Name=rplV {ECO:0000255|HAMAP-Rule:MF_01331}; GN OrderedLocusNames=HP_1314; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION BY MASS SPECTROMETRY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23093592; DOI=10.1093/nar/gks945; RA Redko Y., Aubert S., Stachowicz A., Lenormand P., Namane A., RA Darfeuille F., Thibonnier M., De Reuse H.; RT "A minimal bacterial RNase J-based degradosome is associated with RT translating ribosomes."; RL Nucleic Acids Res. 41:288-301(2013). CC -!- FUNCTION: This protein binds specifically to 23S rRNA; its binding CC is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. CC It is important during the early stages of 50S assembly. It makes CC multiple contacts with different domains of the 23S rRNA in the CC assembled 50S subunit and ribosome (By similarity). CC {ECO:0000255|HAMAP-Rule:MF_01331}. CC -!- FUNCTION: The globular domain of the protein is located near the CC polypeptide exit tunnel on the outside of the subunit, while an CC extended beta-hairpin is found that lines the wall of the exit CC tunnel in the center of the 70S ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01331}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01331}. CC -!- SIMILARITY: Belongs to the ribosomal protein L22P family. CC {ECO:0000255|HAMAP-Rule:MF_01331}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08353.1; -; Genomic_DNA. DR PIR; B64684; B64684. DR RefSeq; NP_208106.1; NC_000915.1. DR RefSeq; WP_000030375.1; NC_018939.1. DR ProteinModelPortal; P56047; -. DR DIP; DIP-3280N; -. DR IntAct; P56047; 2. DR MINT; MINT-170202; -. DR STRING; 85962.HP1314; -. DR PaxDb; P56047; -. DR PRIDE; P56047; -. DR EnsemblBacteria; AAD08353; AAD08353; HP_1314. DR GeneID; 898876; -. DR KEGG; heo:C694_06785; -. DR KEGG; hpy:HP1314; -. DR PATRIC; 20594009; VBIHelPyl33062_1375. DR eggNOG; ENOG4105KAP; Bacteria. DR eggNOG; COG0091; LUCA. DR KO; K02890; -. DR OMA; SANQGRT; -. DR OrthoDB; EOG6V4GKB; -. DR BioCyc; HPY:HP1314-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.470.10; -; 1. DR HAMAP; MF_01331_B; Ribosomal_L22_B; 1. DR InterPro; IPR001063; Ribosomal_L22. DR InterPro; IPR018260; Ribosomal_L22/L17_CS. DR InterPro; IPR005727; Ribosomal_L22_bac/chlpt-type. DR PANTHER; PTHR13501; PTHR13501; 1. DR Pfam; PF00237; Ribosomal_L22; 1. DR SUPFAM; SSF54843; SSF54843; 1. DR TIGRFAMs; TIGR01044; rplV_bact; 1. DR PROSITE; PS00464; RIBOSOMAL_L22; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 122 50S ribosomal protein L22. FT /FTId=PRO_0000125163. SQ SEQUENCE 122 AA; 13076 MW; C3F02854DFBB7895 CRC64; MSKALLRFVR LSPTKARLIA RQIQGMNAEL AIASLEFTPN KAARVLSKVV ASAVANGSLD AKSALIVSCR VDAGPVLRRS IPRAKGRATA IRKPTSHVFV EVAEGKEMKS SKSHKKNQAE GK // ID RL31_HELPY Reviewed; 67 AA. AC P66185; P56053; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=50S ribosomal protein L31 {ECO:0000255|HAMAP-Rule:MF_00501}; GN Name=rpmE {ECO:0000255|HAMAP-Rule:MF_00501}; GN OrderedLocusNames=HP_0551; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds the 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_00501}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_00501}. CC -!- SIMILARITY: Belongs to the ribosomal protein L31P family. Type A CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00501}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07617.1; -; Genomic_DNA. DR PIR; G64588; G64588. DR RefSeq; NP_207346.1; NC_000915.1. DR RefSeq; WP_000715278.1; NC_018939.1. DR ProteinModelPortal; P66185; -. DR IntAct; P66185; 1. DR STRING; 85962.HP0551; -. DR PaxDb; P66185; -. DR PRIDE; P66185; -. DR EnsemblBacteria; AAD07617; AAD07617; HP_0551. DR GeneID; 900000; -. DR KEGG; heo:C694_02850; -. DR KEGG; hpy:HP0551; -. DR PATRIC; 20592377; VBIHelPyl33062_0577. DR eggNOG; ENOG41082DI; Bacteria. DR eggNOG; COG0254; LUCA. DR KO; K02909; -. DR OMA; YTGQQKA; -. DR OrthoDB; EOG6DVJZM; -. DR BioCyc; HPY:HP0551-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00501; Ribosomal_L31_1; 1. DR InterPro; IPR002150; Ribosomal_L31. DR InterPro; IPR027491; Ribosomal_L31_A. DR Pfam; PF01197; Ribosomal_L31; 1. DR PRINTS; PR01249; RIBOSOMALL31. DR TIGRFAMs; TIGR00105; L31; 1. DR PROSITE; PS01143; RIBOSOMAL_L31; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 67 50S ribosomal protein L31. FT /FTId=PRO_0000173115. SQ SEQUENCE 67 AA; 7652 MW; D8993C4F42319FAE CRC64; MKKGIHPEYI PCKVTCVTSG KEIEVLSTKP EMRIDISSFC HPFYTGSDKI ADTAGRVEKF KQRYNLK // ID RL4_HELPY Reviewed; 215 AA. AC P56032; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328}; GN Name=rplD {ECO:0000255|HAMAP-Rule:MF_01328}; GN OrderedLocusNames=HP_1318; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, this protein CC initially binds near the 5'-end of the 23S rRNA. It is important CC during the early stages of 50S assembly. It makes multiple CC contacts with different domains of the 23S rRNA in the assembled CC 50S subunit and ribosome. {ECO:0000255|HAMAP-Rule:MF_01328}. CC -!- FUNCTION: Forms part of the polypeptide exit tunnel. CC {ECO:0000255|HAMAP-Rule:MF_01328}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01328}. CC -!- SIMILARITY: Belongs to the ribosomal protein L4P family. CC {ECO:0000255|HAMAP-Rule:MF_01328}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08357.1; -; Genomic_DNA. DR PIR; F64684; F64684. DR RefSeq; NP_208110.1; NC_000915.1. DR RefSeq; WP_000030195.1; NC_018939.1. DR ProteinModelPortal; P56032; -. DR DIP; DIP-3117N; -. DR IntAct; P56032; 7. DR MINT; MINT-172477; -. DR STRING; 85962.HP1318; -. DR PaxDb; P56032; -. DR PRIDE; P56032; -. DR EnsemblBacteria; AAD08357; AAD08357; HP_1318. DR GeneID; 898886; -. DR KEGG; heo:C694_06805; -. DR KEGG; hpy:HP1318; -. DR PATRIC; 20594017; VBIHelPyl33062_1379. DR eggNOG; ENOG4106U5A; Bacteria. DR eggNOG; COG0088; LUCA. DR KO; K02926; -. DR OMA; GVSHGPS; -. DR OrthoDB; EOG6M0T9G; -. DR BioCyc; HPY:HP1318-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1370.10; -; 1. DR HAMAP; MF_01328_B; Ribosomal_L4_B; 1. DR InterPro; IPR002136; Ribosomal_L4/L1e. DR InterPro; IPR023574; Ribosomal_L4_dom. DR InterPro; IPR013005; Ribosomal_uL4/L1e. DR PANTHER; PTHR10746; PTHR10746; 1. DR Pfam; PF00573; Ribosomal_L4; 1. DR SUPFAM; SSF52166; SSF52166; 1. DR TIGRFAMs; TIGR03953; rplD_bact; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 215 50S ribosomal protein L4. FT /FTId=PRO_0000129225. SQ SEQUENCE 215 AA; 24023 MW; EF4EBBBFFF1B824E CRC64; MSKAIVLDSH LKEKGSVELP KRYESINSHN LYLYVKHYLS SARANTAKSK NRAEVSGGGR KPWAQKGGGR ARAGSITSPV FVGGGVSHGA TNNRNYNLKI NKKQKRLALE YALEEKAQAN KLFVVEKIAI KGVVEDNKRK HLTKEANQMF QALEQRDTLF VCMNMDEYTE LAFSNLKKCL IVDVSELNAY LLAAFSSVVM EEAAFQHVVQ DKTEE // ID RL5_HELPY Reviewed; 181 AA. AC P56033; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=50S ribosomal protein L5 {ECO:0000255|HAMAP-Rule:MF_01333}; GN Name=rplE {ECO:0000255|HAMAP-Rule:MF_01333}; GN OrderedLocusNames=HP_1307; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This is 1 of the proteins that binds and probably CC mediates the attachment of the 5S RNA into the large ribosomal CC subunit, where it forms part of the central protuberance. In the CC 70S ribosome it contacts protein S13 of the 30S subunit (bridge CC B1b), connecting the 2 subunits; this bridge is implicated in CC subunit movement. Contacts the P site tRNA; the 5S rRNA and some CC of its associated proteins might help stabilize positioning of CC ribosome-bound tRNAs. {ECO:0000255|HAMAP-Rule:MF_01333}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S CC rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site CC tRNA. Forms a bridge to the 30S subunit in the 70S ribosome. CC {ECO:0000255|HAMAP-Rule:MF_01333}. CC -!- SIMILARITY: Belongs to the ribosomal protein L5P family. CC {ECO:0000255|HAMAP-Rule:MF_01333}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08347.1; -; Genomic_DNA. DR PIR; C64683; C64683. DR RefSeq; NP_208099.1; NC_000915.1. DR RefSeq; WP_000467399.1; NC_018939.1. DR ProteinModelPortal; P56033; -. DR SMR; P56033; 1-179. DR IntAct; P56033; 1. DR STRING; 85962.HP1307; -. DR PaxDb; P56033; -. DR PRIDE; P56033; -. DR EnsemblBacteria; AAD08347; AAD08347; HP_1307. DR GeneID; 900329; -. DR KEGG; heo:C694_06750; -. DR KEGG; hpy:HP1307; -. DR PATRIC; 20593995; VBIHelPyl33062_1368. DR eggNOG; ENOG4105CW6; Bacteria. DR eggNOG; COG0094; LUCA. DR KO; K02931; -. DR OMA; YRETIQP; -. DR OrthoDB; EOG6M9F1R; -. DR BioCyc; HPY:HP1307-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1440.10; -; 1. DR HAMAP; MF_01333_B; Ribosomal_L5_B; 1. DR InterPro; IPR002132; Ribosomal_L5. DR InterPro; IPR020930; Ribosomal_L5_bac-type. DR InterPro; IPR031309; Ribosomal_L5_C. DR InterPro; IPR020929; Ribosomal_L5_CS. DR InterPro; IPR022803; Ribosomal_L5_domain. DR InterPro; IPR031310; Ribosomal_L5_N. DR Pfam; PF00281; Ribosomal_L5; 1. DR Pfam; PF00673; Ribosomal_L5_C; 1. DR PIRSF; PIRSF002161; Ribosomal_L5; 1. DR SUPFAM; SSF55282; SSF55282; 1. DR PROSITE; PS00358; RIBOSOMAL_L5; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA-binding. FT CHAIN 1 181 50S ribosomal protein L5. FT /FTId=PRO_0000124935. SQ SEQUENCE 181 AA; 20228 MW; ABFF9572D416FE90 CRC64; MFGLKQFYQS EVRTKLAQEL DIKNPMLLPK LEKIVISVGA GAHAKDMKIM QNIAQTISLI AGQKAVITKA KKSVAGFKIR EGMAVGAKVT LRNKRMYNFL EKLIVISLPR VKDFRGISRN GFDGCGNYTF GINEQLIFPE VVYDDIMVSH GMNITMVTST DNDKEAFKLL ELLGLPFAKV R // ID RL36_HELPY Reviewed; 37 AA. AC P56058; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 73. DE RecName: Full=50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; GN Name=rpmJ {ECO:0000255|HAMAP-Rule:MF_00251}; GN OrderedLocusNames=HP_1297; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L36P family. CC {ECO:0000255|HAMAP-Rule:MF_00251}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08363.1; -; Genomic_DNA. DR PIR; A64682; A64682. DR RefSeq; NP_208089.1; NC_000915.1. DR RefSeq; WP_000868341.1; NC_000915.1. DR ProteinModelPortal; P56058; -. DR SMR; P56058; 1-37. DR STRING; 85962.HP1297; -. DR PaxDb; P56058; -. DR PRIDE; P56058; -. DR EnsemblBacteria; AAD08363; AAD08363; HP_1297. DR GeneID; 899024; -. DR KEGG; hpy:HP1297; -. DR eggNOG; ENOG41067V7; Bacteria. DR eggNOG; COG0257; LUCA. DR KO; K02919; -. DR OrthoDB; EOG676ZC2; -. DR BioCyc; HPY:HP1297-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00251; Ribosomal_L36; 1. DR InterPro; IPR000473; Ribosomal_L36. DR PANTHER; PTHR18804; PTHR18804; 1. DR Pfam; PF00444; Ribosomal_L36; 1. DR SUPFAM; SSF57840; SSF57840; 1. DR TIGRFAMs; TIGR01022; rpmJ_bact; 1. DR PROSITE; PS00828; RIBOSOMAL_L36; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 37 50S ribosomal protein L36. FT /FTId=PRO_0000126194. SQ SEQUENCE 37 AA; 4307 MW; 5CFD58279C44309E CRC64; MKVRPSVKKM CDNCKIIKRR GVIRVICATP KHKQRQG // ID RL28_HELPY Reviewed; 62 AA. AC P66142; P56051; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=50S ribosomal protein L28 {ECO:0000255|HAMAP-Rule:MF_00373}; GN Name=rpmB {ECO:0000255|HAMAP-Rule:MF_00373}; GN OrderedLocusNames=HP_0491; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L28P family. CC {ECO:0000255|HAMAP-Rule:MF_00373}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07567.1; -; Genomic_DNA. DR PIR; C64581; C64581. DR RefSeq; NP_207288.1; NC_000915.1. DR RefSeq; WP_001118998.1; NC_018939.1. DR ProteinModelPortal; P66142; -. DR IntAct; P66142; 1. DR STRING; 85962.HP0491; -. DR PaxDb; P66142; -. DR PRIDE; P66142; -. DR EnsemblBacteria; AAD07567; AAD07567; HP_0491. DR GeneID; 898908; -. DR KEGG; heo:C694_02525; -. DR KEGG; hpy:HP0491; -. DR PATRIC; 20592257; VBIHelPyl33062_0517. DR eggNOG; ENOG4105VB9; Bacteria. DR eggNOG; COG0227; LUCA. DR KO; K02902; -. DR OMA; GGSMRIK; -. DR OrthoDB; EOG6W727M; -. DR BioCyc; HPY:HP0491-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00373; Ribosomal_L28; 1. DR InterPro; IPR026569; Ribo_L28/L24. DR InterPro; IPR001383; Ribosomal_L28. DR Pfam; PF00830; Ribosomal_L28; 1. DR TIGRFAMs; TIGR00009; L28; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 62 50S ribosomal protein L28. FT /FTId=PRO_0000178482. SQ SEQUENCE 62 AA; 6929 MW; D49B64BDC5C6C1A3 CRC64; MAKRCALTFK GPMIGNHVSH ANNKNKRRLL PNLRSIKIQL DDGTTKRIKV AASTLRTMRK GA // ID RL2_HELPY Reviewed; 276 AA. AC P56030; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 94. DE RecName: Full=50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; GN Name=rplB {ECO:0000255|HAMAP-Rule:MF_01320}; GN OrderedLocusNames=HP_1316; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins. Required for CC association of the 30S and 50S subunits to form the 70S ribosome, CC for tRNA binding and peptide bond formation. It has been suggested CC to have peptidyltransferase activity; this is somewhat CC controversial. Makes several contacts with the 16S rRNA in the 70S CC ribosome. {ECO:0000255|HAMAP-Rule:MF_01320}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a bridge to the CC 30S subunit in the 70S ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01320}. CC -!- SIMILARITY: Belongs to the ribosomal protein L2P family. CC {ECO:0000255|HAMAP-Rule:MF_01320}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08355.1; -; Genomic_DNA. DR PIR; D64684; D64684. DR RefSeq; NP_208108.1; NC_000915.1. DR RefSeq; WP_000985807.1; NC_018939.1. DR ProteinModelPortal; P56030; -. DR SMR; P56030; 62-196. DR DIP; DIP-3298N; -. DR IntAct; P56030; 7. DR MINT; MINT-162822; -. DR STRING; 85962.HP1316; -. DR PaxDb; P56030; -. DR PRIDE; P56030; -. DR EnsemblBacteria; AAD08355; AAD08355; HP_1316. DR GeneID; 900326; -. DR KEGG; heo:C694_06795; -. DR KEGG; hpy:HP1316; -. DR PATRIC; 20594013; VBIHelPyl33062_1377. DR eggNOG; ENOG4105CFD; Bacteria. DR eggNOG; COG0090; LUCA. DR KO; K02886; -. DR OMA; NKRTTSM; -. DR OrthoDB; EOG6TR0J1; -. DR BioCyc; HPY:HP1316-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0016740; F:transferase activity; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.30; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 4.10.950.10; -; 1. DR HAMAP; MF_01320_B; Ribosomal_L2_B; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR022666; Rbsml_prot_L2_RNA-bd_dom. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR002171; Ribosomal_L2. DR InterPro; IPR005880; Ribosomal_L2_bac/org-type. DR InterPro; IPR022669; Ribosomal_L2_C. DR InterPro; IPR022671; Ribosomal_L2_CS. DR InterPro; IPR014726; Ribosomal_L2_dom3. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR13691; PTHR13691; 1. DR Pfam; PF00181; Ribosomal_L2; 1. DR Pfam; PF03947; Ribosomal_L2_C; 1. DR PIRSF; PIRSF002158; Ribosomal_L2; 1. DR SMART; SM01383; Ribosomal_L2; 1. DR SMART; SM01382; Ribosomal_L2_C; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR01171; rplB_bact; 1. DR PROSITE; PS00467; RIBOSOMAL_L2; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 276 50S ribosomal protein L2. FT /FTId=PRO_0000129569. SQ SEQUENCE 276 AA; 30271 MW; 5DCA6F36726C9A35 CRC64; MAIKTYKPYT PSRRFMSVLD SKDITAKSSV KGLLTKLKAT AGRNNNGRIT SRHKERGAKK LYRIIDFKRN KYNIEGKVAA IEYDPYRNAR IALVVYPDGD KRYILQPSGL KVGDSVIAAE GGLDIKVGFA MKLKNIPIGT VVHNIEMHPG AGGQLARSAG MSAQIMGREN KYTIIRMPSS EMRYILSECM ASVGVVGNED FINVSIGKAG RNRHRGIRPQ TRGSAMNPVD HPHGGGEGKT GTSGHPVSPW GTPAKGYKTR KKKASDKLII SRKKHK // ID RL35_HELPY Reviewed; 64 AA. AC P66269; P56057; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; GN Name=rpmI {ECO:0000255|HAMAP-Rule:MF_00514}; GN OrderedLocusNames=HP_0125; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein L35P family. CC {ECO:0000255|HAMAP-Rule:MF_00514}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07195.1; -; Genomic_DNA. DR PIR; E64535; E64535. DR RefSeq; NP_206925.1; NC_000915.1. DR RefSeq; WP_001125542.1; NC_018939.1. DR ProteinModelPortal; P66269; -. DR IntAct; P66269; 3. DR STRING; 85962.HP0125; -. DR PaxDb; P66269; -. DR PRIDE; P66269; -. DR EnsemblBacteria; AAD07195; AAD07195; HP_0125. DR GeneID; 899127; -. DR KEGG; heo:C694_00620; -. DR KEGG; hpy:HP0125; -. DR PATRIC; 20591467; VBIHelPyl33062_0133. DR eggNOG; ENOG41084M8; Bacteria. DR eggNOG; COG0291; LUCA. DR KO; K02916; -. DR OMA; TNMGHIA; -. DR OrthoDB; EOG651T3B; -. DR BioCyc; HPY:HP0125-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00514; Ribosomal_L35; 1. DR InterPro; IPR021137; Ribosomal_L35. DR InterPro; IPR018265; Ribosomal_L35_CS. DR InterPro; IPR001706; Ribosomal_L35_non-mt. DR Pfam; PF01632; Ribosomal_L35p; 1. DR PRINTS; PR00064; RIBOSOMALL35. DR TIGRFAMs; TIGR00001; rpmI_bact; 1. DR PROSITE; PS00936; RIBOSOMAL_L35; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 64 50S ribosomal protein L35. FT /FTId=PRO_0000177368. SQ SEQUENCE 64 AA; 7260 MW; 49902261870935EF CRC64; MPKMKTNRGA SKRFKVKKNL IKRGSAFKSH ILTKKSPKRK ANLNAPKHVH HTNAHSVMSL LCRA // ID RL6_HELPY Reviewed; 178 AA. AC P56034; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; GN Name=rplF {ECO:0000255|HAMAP-Rule:MF_01365}; GN OrderedLocusNames=HP_1304; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: This protein binds to the 23S rRNA, and is important in CC its secondary structure. It is located near the subunit interface CC in the base of the L7/L12 stalk, and near the tRNA binding site of CC the peptidyltransferase center. {ECO:0000255|HAMAP-Rule:MF_01365}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01365}. CC -!- SIMILARITY: Belongs to the ribosomal protein L6P family. CC {ECO:0000255|HAMAP-Rule:MF_01365}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08345.1; -; Genomic_DNA. DR PIR; H64682; H64682. DR RefSeq; NP_208096.1; NC_000915.1. DR RefSeq; WP_000086592.1; NC_018939.1. DR ProteinModelPortal; P56034; -. DR STRING; 85962.HP1304; -. DR PaxDb; P56034; -. DR PRIDE; P56034; -. DR EnsemblBacteria; AAD08345; AAD08345; HP_1304. DR GeneID; 898751; -. DR KEGG; heo:C694_06735; -. DR KEGG; hpy:HP1304; -. DR PATRIC; 20593989; VBIHelPyl33062_1365. DR eggNOG; ENOG4108R5J; Bacteria. DR eggNOG; COG0097; LUCA. DR KO; K02933; -. DR OMA; LIANMVE; -. DR OrthoDB; EOG67DPRD; -. DR BioCyc; HPY:HP1304-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.930.12; -; 2. DR HAMAP; MF_01365_B; Ribosomal_L6_B; 1. DR InterPro; IPR000702; Ribosomal_L6. DR InterPro; IPR020040; Ribosomal_L6_a/b-dom. DR InterPro; IPR019906; Ribosomal_L6_bac-type. DR InterPro; IPR002358; Ribosomal_L6_CS. DR PANTHER; PTHR11655; PTHR11655; 1. DR Pfam; PF00347; Ribosomal_L6; 2. DR PIRSF; PIRSF002162; Ribosomal_L6; 1. DR PRINTS; PR00059; RIBOSOMALL6. DR SUPFAM; SSF56053; SSF56053; 2. DR TIGRFAMs; TIGR03654; L6_bact; 1. DR PROSITE; PS00525; RIBOSOMAL_L6_1; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 178 50S ribosomal protein L6. FT /FTId=PRO_0000131052. SQ SEQUENCE 178 AA; 19486 MW; 7014ACBAED5B8EF3 CRC64; MSRIGKRIIE IPSSVQASVE GSKLLFKNSK EKHELETHNR VKITLENNQL SFQPVGEDAQ SRAYWGTYGA LANNIVIGLS TGFSKTLEVN GVGYKVALGN KTLDLSLGFS HPVKYPIPAG IEMVVEKNTI TIKGSDKQKV GQVAAEIRSF RPPEPYKGKG VKYSDEVIIR KAGKTAKK // ID RL7_HELPY Reviewed; 125 AA. AC P55834; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; GN Name=rplL {ECO:0000255|HAMAP-Rule:MF_00368}; GN OrderedLocusNames=HP_1199; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Forms part of the ribosomal stalk which helps the CC ribosome interact with GTP-bound translation factors. Is thus CC essential for accurate translation. {ECO:0000255|HAMAP- CC Rule:MF_00368}. CC -!- SUBUNIT: Homodimer. Part of the ribosomal stalk of the 50S CC ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 CC forms an elongated spine to which 2 to 4 L12 dimers bind in a CC sequential fashion. Binds GTP-bound translation factors. CC {ECO:0000255|HAMAP-Rule:MF_00368}. CC -!- INTERACTION: CC P56036:rplJ; NbExp=3; IntAct=EBI-7696366, EBI-7694828; CC -!- SIMILARITY: Belongs to the ribosomal protein L7/L12P family. CC {ECO:0000255|HAMAP-Rule:MF_00368}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08245.1; -; Genomic_DNA. DR PIR; G64669; G64669. DR RefSeq; NP_207990.1; NC_000915.1. DR RefSeq; WP_001018245.1; NC_018939.1. DR ProteinModelPortal; P55834; -. DR SMR; P55834; 6-125. DR DIP; DIP-3668N; -. DR IntAct; P55834; 2. DR MINT; MINT-185711; -. DR STRING; 85962.HP1199; -. DR PaxDb; P55834; -. DR PRIDE; P55834; -. DR DNASU; 899961; -. DR EnsemblBacteria; AAD08245; AAD08245; HP_1199. DR GeneID; 899961; -. DR KEGG; heo:C694_06205; -. DR KEGG; hpy:HP1199; -. DR PATRIC; 20593757; VBIHelPyl33062_1256. DR eggNOG; ENOG4105KBC; Bacteria. DR eggNOG; COG0222; LUCA. DR KO; K02935; -. DR OMA; AGDQKIK; -. DR OrthoDB; EOG6WMJ69; -. DR BioCyc; HPY:HP1199-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1390.10; -; 1. DR HAMAP; MF_00368; Ribosomal_L7_L12; 1. DR InterPro; IPR000206; Ribosomal_L7/12. DR InterPro; IPR014719; Ribosomal_L7/12_C/ClpS-like. DR InterPro; IPR013823; Ribosomal_L7/L12_C. DR InterPro; IPR008932; Ribosomal_L7/L12_oligo. DR Pfam; PF00542; Ribosomal_L12; 1. DR Pfam; PF16320; Ribosomal_L12_N; 1. DR ProDom; PD001326; Ribosomal_L7/L12_C; 1. DR SUPFAM; SSF48300; SSF48300; 1. DR SUPFAM; SSF54736; SSF54736; 1. DR TIGRFAMs; TIGR00855; L12; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 125 50S ribosomal protein L7/L12. FT /FTId=PRO_0000157536. SQ SEQUENCE 125 AA; 13313 MW; EAEA452B831DA6AB CRC64; MAISKEEVLE YIGSLSVLEL SELVKMFEKK FGVSATPTVV AGAAVAGGAA AESEEKTEFN VILADSGAEK IKVIKVVREI TGLGLKEAKD ATEKTPHVLK EGVNKEEAET IKKKLEEVGA KVEVK // ID RL9_HELPY Reviewed; 149 AA. AC P56035; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 13-DEC-2001, sequence version 2. DT 11-NOV-2015, entry version 92. DE RecName: Full=50S ribosomal protein L9 {ECO:0000255|HAMAP-Rule:MF_00503}; GN Name=rplI {ECO:0000255|HAMAP-Rule:MF_00503}; GN OrderedLocusNames=HP_0514; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_00503}. CC -!- SIMILARITY: Belongs to the ribosomal protein L9P family. CC {ECO:0000255|HAMAP-Rule:MF_00503}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07582.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07582.1; ALT_INIT; Genomic_DNA. DR PIR; B64584; B64584. DR RefSeq; NP_207311.1; NC_000915.1. DR RefSeq; WP_000978736.1; NC_000915.1. DR RefSeq; WP_001862443.1; NC_018939.1. DR ProteinModelPortal; P56035; -. DR DIP; DIP-3673N; -. DR IntAct; P56035; 4. DR MINT; MINT-178039; -. DR STRING; 85962.HP0514; -. DR PaxDb; P56035; -. DR EnsemblBacteria; AAD07582; AAD07582; HP_0514. DR GeneID; 899264; -. DR KEGG; heo:C694_02645; -. DR KEGG; hpy:HP0514; -. DR PATRIC; 20592305; VBIHelPyl33062_0541. DR eggNOG; ENOG4105K9Q; Bacteria. DR eggNOG; COG0359; LUCA. DR KO; K02939; -. DR OMA; AIRWTKG; -. DR OrthoDB; EOG6D8BH0; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.430.100; -; 1. DR Gene3D; 3.40.5.10; -; 1. DR HAMAP; MF_00503; Ribosomal_L9; 1. DR InterPro; IPR000244; Ribosomal_L9. DR InterPro; IPR009027; Ribosomal_L9/RNase_H1_N. DR InterPro; IPR020594; Ribosomal_L9_bac/chp. DR InterPro; IPR020069; Ribosomal_L9_C. DR InterPro; IPR020070; Ribosomal_L9_N. DR PANTHER; PTHR21368; PTHR21368; 1. DR Pfam; PF03948; Ribosomal_L9_C; 1. DR Pfam; PF01281; Ribosomal_L9_N; 1. DR SUPFAM; SSF55653; SSF55653; 1. DR SUPFAM; SSF55658; SSF55658; 1. DR TIGRFAMs; TIGR00158; L9; 1. DR PROSITE; PS00651; RIBOSOMAL_L9; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 149 50S ribosomal protein L9. FT /FTId=PRO_0000176642. SQ SEQUENCE 149 AA; 16460 MW; E9B40FEA264F1C95 CRC64; MKVLLLEDVK NLGKAGEVCE VKDGYGNNFL IANQKAKLAT NEVINKYKAE VKKKAEKEAL EKAQKLQMVE TLQTITLTIH KKVGANGSLF GAITKEEITE RLKEQHASLN LDKKDIELKH PIKSTGIYEI EVKLGSGVVG VFKIDVVAE // ID RLMN_HELPY Reviewed; 357 AA. AC O25970; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; DE EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; GN Name=rlmN {ECO:0000255|HAMAP-Rule:MF_01849}; GN OrderedLocusNames=HP_1428; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 274-357. RC STRAIN=LEU; RX PubMed=7790085; RA Gilbert J.V., Ramakrishna J., Sunderman F.W. Jr., Wright A., RA Plaut A.G.; RT "Protein Hpn: cloning and characterization of a histidine-rich metal- RT binding polypeptide in Helicobacter pylori and Helicobacter RT mustelae."; RL Infect. Immun. 63:2682-2688(1995). CC -!- FUNCTION: Specifically methylates position 2 of adenine 2503 in CC 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 CC modification seems to play a crucial role in the proofreading step CC occurring at the peptidyl transferase center and thus would serve CC to optimize ribosomal fidelity. {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- CATALYTIC ACTIVITY: 2 S-adenosyl-L-methionine + adenine(2503) in CC 23S rRNA + 2 reduced [2Fe-2S] ferredoxin = S-adenosyl-L- CC homocysteine + L-methionine + 5'-deoxyadenosine + 2- CC methyladenine(2503) in 23S rRNA + 2 oxidized [2Fe-2S] ferredoxin. CC {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- CATALYTIC ACTIVITY: 2 S-adenosyl-L-methionine + adenine(37) in CC tRNA + 2 reduced [2Fe-2S] ferredoxin = S-adenosyl-L-homocysteine + CC L-methionine + 5'-deoxyadenosine + 2-methyladenine(37) in tRNA + 2 CC oxidized [2Fe-2S] ferredoxin. {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01849}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01849}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- MISCELLANEOUS: Reaction proceeds by a ping-pong mechanism CC involving intermediate methylation of a conserved cysteine CC residue. {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. RlmN family. CC {ECO:0000255|HAMAP-Rule:MF_01849}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08467.1; -; Genomic_DNA. DR EMBL; U26361; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; D64698; D64698. DR RefSeq; NP_208219.1; NC_000915.1. DR RefSeq; WP_000647798.1; NC_018939.1. DR ProteinModelPortal; O25970; -. DR DIP; DIP-3604N; -. DR IntAct; O25970; 1. DR MINT; MINT-169767; -. DR STRING; 85962.HP1428; -. DR PaxDb; O25970; -. DR PRIDE; O25970; -. DR EnsemblBacteria; AAD08467; AAD08467; HP_1428. DR GeneID; 899867; -. DR KEGG; heo:C694_07385; -. DR KEGG; hpy:HP1428; -. DR PATRIC; 20594255; VBIHelPyl33062_1497. DR eggNOG; ENOG4105C55; Bacteria. DR eggNOG; COG0820; LUCA. DR KO; K06941; -. DR OMA; EGSKFER; -. DR OrthoDB; EOG6DJZ2N; -. DR BioCyc; HPY:HP1428-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0070040; F:rRNA (adenine-C2-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0002935; F:tRNA (adenine-C2-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070475; P:rRNA base methylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01849; RNA_methyltr_RlmN; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR027492; RNA_MTrfase_RlmN. DR InterPro; IPR004383; rRNA_lsu_MTrfase_RlmN/Cfr. DR InterPro; IPR007197; rSAM. DR PANTHER; PTHR30544; PTHR30544; 1. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF006004; CHP00048; 1. DR TIGRFAMs; TIGR00048; rRNA_mod_RlmN; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Disulfide bond; Iron; KW Iron-sulfur; Metal-binding; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase; KW tRNA processing. FT CHAIN 1 357 Dual-specificity RNA methyltransferase FT RlmN. FT /FTId=PRO_0000171925. FT REGION 173 174 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT REGION 226 228 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT ACT_SITE 89 89 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01849}. FT ACT_SITE 345 345 S-methylcysteine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 123 123 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 127 127 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 130 130 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT BINDING 203 203 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT BINDING 302 302 S-adenosyl-L-methionine; via amide FT nitrogen and carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT DISULFID 116 345 (transient). {ECO:0000255|HAMAP- FT Rule:MF_01849}. FT CONFLICT 316 316 N -> S (in Ref. 2; U26361). FT {ECO:0000305}. SQ SEQUENCE 357 AA; 40814 MW; F5386C361668D0EF CRC64; MKASIYDFTL KELSQLLKPS FRAKQLYLWL YAKYKTSFKD MQNNFSKDFI AYLEREFALR TIEITHVRES VDGSKKYLFK SLRDNHTFEA VLLKMKDKKI DAETNAILER EKYTVCVSCQ IGCQVGCSFC FTQKGGFVRN LKASEIIQQA LLIKEDNNLP LEKALNIVFM GMGEPLNNLD EVCKAIEIFN TGMQISPKRI TISTSGVADK IPILAGKNLG VQLAISLHAV DDKTRSSLMP LNKKYNIECV LNEVRKWPLE QRKRVMFEYL LIKDLNDSLD CAKKLLKLLN GIKSKVNLIL FNPHEGSKFE RPSLENARMF ADFLNSKGLL CTIRESKALD IEAACGQLRE KKLSQQI // ID RNC_HELPY Reviewed; 239 AA. AC P56118; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 11-NOV-2015, entry version 102. DE RecName: Full=Ribonuclease 3 {ECO:0000255|HAMAP-Rule:MF_00104}; DE EC=3.1.26.3 {ECO:0000255|HAMAP-Rule:MF_00104}; DE AltName: Full=Ribonuclease III {ECO:0000255|HAMAP-Rule:MF_00104}; DE Short=RNase III {ECO:0000255|HAMAP-Rule:MF_00104}; GN Name=rnc {ECO:0000255|HAMAP-Rule:MF_00104}; OrderedLocusNames=HP_0662; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Digests double-stranded RNA. Involved in the processing CC of primary rRNA transcript to yield the immediate precursors to CC the large and small rRNAs (23S and 16S). Processes some mRNAs, and CC tRNAs when they are encoded in the rRNA operon. Processes pre- CC crRNA and tracrRNA of type II CRISPR loci if present in the CC organism. {ECO:0000255|HAMAP-Rule:MF_00104}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage to 5'- CC phosphomonoester. {ECO:0000255|HAMAP-Rule:MF_00104}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00104}; CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00104}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00104}. CC -!- SIMILARITY: Contains 1 DRBM (double-stranded RNA-binding) domain. CC {ECO:0000255|HAMAP-Rule:MF_00104}. CC -!- SIMILARITY: Contains 1 RNase III domain. {ECO:0000255|HAMAP- CC Rule:MF_00104}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07725.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07725.1; ALT_INIT; Genomic_DNA. DR PIR; F64602; F64602. DR RefSeq; NP_207456.1; NC_000915.1. DR RefSeq; WP_000977306.1; NC_000915.1. DR RefSeq; WP_015056054.1; NC_018939.1. DR ProteinModelPortal; P56118; -. DR IntAct; P56118; 3. DR MINT; MINT-159557; -. DR STRING; 85962.HP0662; -. DR PaxDb; P56118; -. DR EnsemblBacteria; AAD07725; AAD07725; HP_0662. DR GeneID; 899029; -. DR KEGG; heo:C694_03425; -. DR KEGG; hpy:HP0662; -. DR PATRIC; 20592609; VBIHelPyl33062_0693. DR eggNOG; ENOG4108ZBM; Bacteria. DR eggNOG; COG0571; LUCA. DR KO; K03685; -. DR OMA; LTHKSCK; -. DR OrthoDB; EOG6T1WVS; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004525; F:ribonuclease III activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW. DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-HAMAP. DR GO; GO:0016075; P:rRNA catabolic process; IEA:InterPro. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. DR Gene3D; 1.10.1520.10; -; 1. DR Gene3D; 3.30.160.20; -; 1. DR HAMAP; MF_00104; RNase_III; 1. DR InterPro; IPR014720; dsRBD_dom. DR InterPro; IPR011907; RNase_III. DR InterPro; IPR000999; RNase_III_dom. DR Pfam; PF00035; dsrm; 1. DR Pfam; PF14622; Ribonucleas_3_3; 1. DR SMART; SM00358; DSRM; 1. DR SMART; SM00535; RIBOc; 1. DR SUPFAM; SSF69065; SSF69065; 1. DR TIGRFAMs; TIGR02191; RNaseIII; 1. DR PROSITE; PS50137; DS_RBD; 1. DR PROSITE; PS00517; RNASE_3_1; 1. DR PROSITE; PS50142; RNASE_3_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Magnesium; KW Metal-binding; mRNA processing; Nuclease; Reference proteome; KW RNA-binding; rRNA processing; rRNA-binding; tRNA processing. FT CHAIN 1 239 Ribonuclease 3. FT /FTId=PRO_0000180401. FT DOMAIN 18 141 RNase III. {ECO:0000255|HAMAP- FT Rule:MF_00104}. FT DOMAIN 168 237 DRBM. {ECO:0000255|HAMAP-Rule:MF_00104}. FT ACT_SITE 58 58 {ECO:0000255|HAMAP-Rule:MF_00104}. FT ACT_SITE 130 130 {ECO:0000255|HAMAP-Rule:MF_00104}. FT METAL 54 54 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00104}. FT METAL 127 127 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00104}. FT METAL 130 130 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00104}. SQ SEQUENCE 239 AA; 27215 MW; 5FFE8A0F17489BE1 CRC64; MKNKRSQNSP YITPNSSYTT LEKALGYSFK DKRLLEQALT HKSCKLALNN ERLEFLGDAV LGLVIGELLY HKFYQYDEGK LSKLRASIVS AHGFTKLAKA IALQDYLRVS SSEEISNGRE KPSILSSAFE ALMAGVYLEA GLAKVQKIMQ NLLNRAYKRL DLEHLFMDYK TALQELTQAQ FCVIPTYQLL KEKGPDHHKE FEMALYIQDK MYATAKGKSK KEAEQQCAYQ ALQKLKEAK // ID RNH_HELPY Reviewed; 143 AA. AC P56120; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Ribonuclease HI; DE Short=RNase HI; DE EC=3.1.26.4; GN Name=rnhA; OrderedLocusNames=HP_0661; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Endonuclease that specifically degrades the RNA of RNA- CC DNA hybrids. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage to 5'- CC phosphomonoester. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) ion per subunit. May bind a second metal ion CC at a regulatory site, or after substrate binding. {ECO:0000250}; CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the RNase H family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 RNase H domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07724.1; -; Genomic_DNA. DR PIR; E64602; E64602. DR RefSeq; NP_207455.1; NC_000915.1. DR RefSeq; WP_001155448.1; NC_018939.1. DR ProteinModelPortal; P56120; -. DR IntAct; P56120; 18. DR MINT; MINT-167639; -. DR STRING; 85962.HP0661; -. DR PaxDb; P56120; -. DR PRIDE; P56120; -. DR EnsemblBacteria; AAD07724; AAD07724; HP_0661. DR GeneID; 899305; -. DR KEGG; heo:C694_03420; -. DR KEGG; hpy:HP0661; -. DR PATRIC; 20592607; VBIHelPyl33062_0692. DR eggNOG; ENOG4108UMW; Bacteria. DR eggNOG; COG0328; LUCA. DR KO; K03469; -. DR OMA; LVTDSQY; -. DR OrthoDB; EOG696BTR; -. DR BioCyc; HPY:HP0661-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.10; -; 1. DR HAMAP; MF_00042; RNase_H; 1. DR InterPro; IPR022892; RNaseH. DR InterPro; IPR012337; RNaseH-like_dom. DR InterPro; IPR002156; RNaseH_domain. DR Pfam; PF00075; RNase_H; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR PROSITE; PS50879; RNASE_H; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Magnesium; KW Metal-binding; Nuclease; Reference proteome. FT CHAIN 1 143 Ribonuclease HI. FT /FTId=PRO_0000195379. FT DOMAIN 1 136 RNase H. FT METAL 9 9 Magnesium 1. {ECO:0000250}. FT METAL 9 9 Magnesium 2. {ECO:0000250}. FT METAL 47 47 Magnesium 1. {ECO:0000250}. FT METAL 69 69 Magnesium 1. {ECO:0000250}. FT METAL 128 128 Magnesium 2. {ECO:0000250}. SQ SEQUENCE 143 AA; 16247 MW; AACFDB2FAEC14753 CRC64; MQEIEIFCDG SSLGNPGPGG YAAILRYKDK EKTISGGEEF TTNNRMELRA LNEALKILKR PCRITLYSDS QYVCQAINVW LANWQKKNFS KVKNVDLWKE FLEVSKGHSI VAVWIKGHNG HAENERCDSL AKLEAQKRVK TTT // ID RNR_HELPY Reviewed; 644 AA. AC P56123; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Ribonuclease R {ECO:0000255|HAMAP-Rule:MF_01895}; DE Short=RNase R {ECO:0000255|HAMAP-Rule:MF_01895}; DE EC=3.1.13.1 {ECO:0000255|HAMAP-Rule:MF_01895}; DE AltName: Full=VacB protein homolog; GN Name=rnr {ECO:0000255|HAMAP-Rule:MF_01895}; Synonyms=vacB; GN OrderedLocusNames=HP_1248; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695, N6, and X47-2AL; RX PubMed=19043582; DOI=10.1371/journal.pone.0003810; RA Thibonnier M., Thiberge J.M., De Reuse H.; RT "Trans-translation in Helicobacter pylori: essentiality of ribosome RT rescue and requirement of protein tagging for stress resistance and RT competence."; RL PLoS ONE 3:E3810-E3810(2008). CC -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside CC monophosphates and is involved in maturation of structured RNAs. CC {ECO:0000255|HAMAP-Rule:MF_01895}. CC -!- CATALYTIC ACTIVITY: Exonucleolytic cleavage in the 3'- to 5'- CC direction to yield nucleoside 5'-phosphates. {ECO:0000255|HAMAP- CC Rule:MF_01895}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01895}. CC -!- DISRUPTION PHENOTYPE: No visible phenotype. CC {ECO:0000269|PubMed:19043582}. CC -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01895}. CC -!- SIMILARITY: Contains 1 S1 motif domain. {ECO:0000255|HAMAP- CC Rule:MF_01895}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08293.1; -; Genomic_DNA. DR PIR; H64675; H64675. DR RefSeq; NP_208040.1; NC_000915.1. DR RefSeq; WP_001161318.1; NC_018939.1. DR ProteinModelPortal; P56123; -. DR DIP; DIP-3252N; -. DR IntAct; P56123; 11. DR MINT; MINT-159708; -. DR STRING; 85962.HP1248; -. DR PaxDb; P56123; -. DR PRIDE; P56123; -. DR EnsemblBacteria; AAD08293; AAD08293; HP_1248. DR GeneID; 898781; -. DR KEGG; heo:C694_06450; -. DR KEGG; hpy:HP1248; -. DR PATRIC; 20593873; VBIHelPyl33062_1307. DR eggNOG; ENOG4105C40; Bacteria. DR eggNOG; COG0557; LUCA. DR KO; K12573; -. DR OMA; YRTHKEP; -. DR OrthoDB; EOG6Q5NRD; -. DR BioCyc; HPY:HP1248-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01895; RNase_R; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR022966; RNase_II/R_CS. DR InterPro; IPR011805; RNase_R. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS01175; RIBONUCLEASE_II; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Exonuclease; Hydrolase; Nuclease; KW Reference proteome; RNA-binding. FT CHAIN 1 644 Ribonuclease R. FT /FTId=PRO_0000166404. FT DOMAIN 573 644 S1 motif. {ECO:0000255|HAMAP- FT Rule:MF_01895}. SQ SEQUENCE 644 AA; 74163 MW; 960C62605A041EE4 CRC64; MQGFLRSLFF GVKKIPKPFA PLVEKGVLKE ALELKKDRYF LKEGFDIGKV EKVKDKAFFI SLAKNYPKDP LIKNLPPSFK TDALILCQIE CSKKRPIAFF KAALLNADHT MIAYLAKKNN QIVAIPFKEP FKKPVSLKHS QKSLLELPRH CVVKIDTKKR EISEILGALE DPLIDENLSL SLFDRVKDFS KDCLNLAQHY AQLKASDFKD RINYSHIPFI TIDPKDAKDF DDAIFYDQEK RVLFVAVADV SEFVPKHSSL DKEARVRGFS VYFPNSVYPM LPLSLSQGAC SLKAFEKRLA LVYEIPLDNL KNARLSQGVI EVRANCTYEE INHFLSANQS SLDKDLQQSL LGFLEMALKL KKERLKKGFN FNSFENKLYL NKEGRIEKIE TEKESDAHTL IEEAMLLANQ SSARLLDEHF HNKGIYRTHK EPSLEQQKRL YDKLFDYEIV RPKNMGFFPF LEHALKIAKE KSIEREVSRL IIKSQNLALY SPLQESHFGL GFASYTHFTS PIRRYSDLAL HRLLKELLFY QAKGCSYLLE ETPELCAELN ALQKKAALIE RDFIKRKFAR LALELLEKEF LGVVLEVKDW VVVGLKEFIG LKVLVKTNKV FKPLEKVRVT ITHADLILGQ VRGEITERIK EHVS // ID RL3_HELPY Reviewed; 191 AA. AC P56031; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 80. DE RecName: Full=50S ribosomal protein L3; GN Name=rplC; OrderedLocusNames=HP_1319; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly near the 3'-end of the 23S rRNA, where it nucleates CC assembly of the 50S subunit. {ECO:0000250}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with CC proteins L14 and L19 (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribosomal protein L3P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08358.1; -; Genomic_DNA. DR PIR; G64684; G64684. DR RefSeq; NP_208111.1; NC_000915.1. DR RefSeq; WP_000395313.1; NC_018939.1. DR ProteinModelPortal; P56031; -. DR STRING; 85962.HP1319; -. DR PaxDb; P56031; -. DR PRIDE; P56031; -. DR EnsemblBacteria; AAD08358; AAD08358; HP_1319. DR GeneID; 900242; -. DR KEGG; heo:C694_06810; -. DR KEGG; hpy:HP1319; -. DR PATRIC; 20594019; VBIHelPyl33062_1380. DR eggNOG; ENOG4105EEE; Bacteria. DR eggNOG; COG0087; LUCA. DR KO; K02906; -. DR OMA; SIGNCEW; -. DR OrthoDB; EOG6WDSMH; -. DR BioCyc; HPY:HP1319-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR000597; Ribosomal_L3. DR InterPro; IPR019927; Ribosomal_L3_bac/org-type. DR InterPro; IPR009000; Transl_B-barrel. DR PANTHER; PTHR11229; PTHR11229; 1. DR Pfam; PF00297; Ribosomal_L3; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR TIGRFAMs; TIGR03625; L3_bact; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 191 50S ribosomal protein L3. FT /FTId=PRO_0000077108. SQ SEQUENCE 191 AA; 21192 MW; BD60D543BE77B2AC CRC64; MEFLVQKIGM SRTIDANSTP VTLLKVLQAK VCQLENGKAL VAYAMHKKHN KAIEGQQKKY QLSKEFNHFA TLKASQQKEL GDLDLSALET LKRVKASFKT KGRGFAGVMK RWNFQGGPAA HGSRFHRRPG SIGNREWPGR VQKGRKMAGH YGNELVTCQN EVLSFDKESM VLVLKGSVAG FSGAYGRIRA V // ID RLPA_HELPY Reviewed; 315 AA. AC O26091; DT 05-MAR-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 102. DE RecName: Full=RlpA-like lipoprotein; DE Flags: Precursor; GN OrderedLocusNames=HP_1571; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor CC {ECO:0000305}. CC -!- SIMILARITY: Belongs to the RlpA family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 SPOR domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08608.1; -; Genomic_DNA. DR PIR; C64716; C64716. DR RefSeq; NP_208362.1; NC_000915.1. DR RefSeq; WP_000521815.1; NC_018939.1. DR ProteinModelPortal; O26091; -. DR DIP; DIP-3473N; -. DR IntAct; O26091; 1. DR MINT; MINT-159865; -. DR STRING; 85962.HP1571; -. DR PaxDb; O26091; -. DR PRIDE; O26091; -. DR EnsemblBacteria; AAD08608; AAD08608; HP_1571. DR GeneID; 899720; -. DR KEGG; heo:C694_08140; -. DR KEGG; hpy:HP1571; -. DR PATRIC; 20594569; VBIHelPyl33062_1652. DR eggNOG; ENOG4105K6T; Bacteria. DR eggNOG; COG0797; LUCA. DR KO; K03642; -. DR OMA; YENAKDY; -. DR OrthoDB; EOG6X3W9K; -. DR BioCyc; HPY:HP1571-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0042834; F:peptidoglycan binding; IEA:InterPro. DR Gene3D; 3.30.70.1070; -; 1. DR InterPro; IPR009009; RlpA-like_DPBB. DR InterPro; IPR012997; RplA. DR InterPro; IPR007730; SPOR_dom. DR Pfam; PF03330; DPBB_1; 1. DR Pfam; PF05036; SPOR; 1. DR SUPFAM; SSF110997; SSF110997; 1. DR SUPFAM; SSF50685; SSF50685; 1. DR TIGRFAMs; TIGR00413; rlpA; 1. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. DR PROSITE; PS51724; SPOR; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Lipoprotein; Membrane; Palmitate; KW Reference proteome; Signal. FT SIGNAL 1 19 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 20 315 RlpA-like lipoprotein. FT /FTId=PRO_0000030804. FT DOMAIN 242 315 SPOR. FT LIPID 20 20 N-palmitoyl cysteine. FT {ECO:0000255|PROSITE-ProRule:PRU00303}. FT LIPID 20 20 S-diacylglycerol cysteine. FT {ECO:0000255|PROSITE-ProRule:PRU00303}. SQ SEQUENCE 315 AA; 35476 MW; 194402D94C1FC14D CRC64; MGLALEKVCF LGVIFLISAC TVKKEGVKNL SYKHESLRAY ENAKDYDPTT KKAAYKRNFF ERHFKRYSDS QDSNTKDQPL DNGMRDSSSI QRATMRPYQV GGKWYYPTKV DLGEKFDGVA SWYGPNFHAK KTSNGEIYNM YAHTAAHKTL PMNTVVKVIN VDNNLSTIVR INDRGPFVSD RIIDLSNAAA RDIDMVKKGT ASVRLIVLGF GGVISTQYEQ SFNASSSKIL HKEFKVGESE KSVSGGKFSL QMGAFRNQIG AQTLADKLQA ENPNYSVKVA FKDDLYKVLV QGFQSEEEAR DFMKKYNQNA VLTRE // ID RLMH_HELPY Reviewed; 150 AA. AC O25603; DT 20-JUN-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=Ribosomal RNA large subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_00658}; DE EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658}; DE AltName: Full=23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; DE AltName: Full=23S rRNA m3Psi1915 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; DE AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000255|HAMAP-Rule:MF_00658}; GN Name=rlmH {ECO:0000255|HAMAP-Rule:MF_00658}; GN OrderedLocusNames=HP_0949; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically methylates the pseudouridine at position CC 1915 (m3Psi1915) in 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_00658}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + pseudouridine(1915) CC in 23S rRNA = S-adenosyl-L-homocysteine + N(3)- CC methylpseudouridine(1915) in 23S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_00658}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00658}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00658}. CC -!- SIMILARITY: Belongs to the RNA methyltransferase RlmH family. CC {ECO:0000255|HAMAP-Rule:MF_00658}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07994.1; -; Genomic_DNA. DR PIR; E64638; E64638. DR RefSeq; NP_207741.1; NC_000915.1. DR RefSeq; WP_001203892.1; NC_018939.1. DR ProteinModelPortal; O25603; -. DR STRING; 85962.HP0949; -. DR PaxDb; O25603; -. DR PRIDE; O25603; -. DR EnsemblBacteria; AAD07994; AAD07994; HP_0949. DR GeneID; 899482; -. DR KEGG; heo:C694_04890; -. DR KEGG; hpy:HP0949; -. DR PATRIC; 20593211; VBIHelPyl33062_0987. DR eggNOG; ENOG4108UXA; Bacteria. DR eggNOG; COG1576; LUCA. DR KO; K00783; -. DR OMA; RFDCELE; -. DR OrthoDB; EOG6S26HR; -. DR BioCyc; HPY:HP0949-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0070038; F:rRNA (pseudouridine-N3-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1280.10; -; 1. DR HAMAP; MF_00658; 23SrRNA_methyltr_H; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR003742; SPOUT_MeTrfase. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR Pfam; PF02590; SPOUT_MTase; 1. DR PIRSF; PIRSF004505; MT_bac; 1. DR SUPFAM; SSF75217; SSF75217; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 150 Ribosomal RNA large subunit FT methyltransferase H. FT /FTId=PRO_0000198128. SQ SEQUENCE 150 AA; 17331 MW; F7F96C66732F24C4 CRC64; MRCVVYSIAK SSPLELVKIY QKQCRQFDCE LELVDLFPKN TANAQKVSKK LAQKSYSLAF EPYLNPKAKN IALHPKAQRG DSFAFSKMLE NHLNINFFIA GAYGFEENFL KDCQAWSLSE MTFSHEVAKI VLCEQIYRAL SIIFKHPYHK // ID RNH2_HELPY Reviewed; 209 AA. AC P56121; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Ribonuclease HII; DE Short=RNase HII; DE EC=3.1.26.4; GN Name=rnhB; OrderedLocusNames=HP_1323; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Endonuclease that specifically degrades the RNA of RNA- CC DNA hybrids. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage to 5'- CC phosphomonoester. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Manganese or magnesium. Binds 1 divalent metal ion per CC monomer in the absence of substrate. May bind a second metal ion CC after substrate binding. {ECO:0000250}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the RNase HII family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08367.1; -; Genomic_DNA. DR PIR; C64685; C64685. DR RefSeq; NP_208115.1; NC_000915.1. DR RefSeq; WP_010875612.1; NC_000915.1. DR ProteinModelPortal; P56121; -. DR STRING; 85962.HP1323; -. DR PaxDb; P56121; -. DR PRIDE; P56121; -. DR EnsemblBacteria; AAD08367; AAD08367; HP_1323. DR GeneID; 900259; -. DR KEGG; hpy:HP1323; -. DR PATRIC; 20594027; VBIHelPyl33062_1384. DR eggNOG; ENOG4108UH2; Bacteria. DR eggNOG; COG0164; LUCA. DR KO; K03470; -. DR OMA; IKTHGEV; -. DR OrthoDB; EOG6BKJC8; -. DR BioCyc; HPY:HP1323-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.10; -; 1. DR HAMAP; MF_00052_B; RNase_HII_B; 1. DR InterPro; IPR022898; RNase_HII. DR InterPro; IPR001352; RNase_HII/HIII. DR InterPro; IPR024567; RNase_HII/HIII_dom. DR InterPro; IPR012337; RNaseH-like_dom. DR PANTHER; PTHR10954; PTHR10954; 1. DR Pfam; PF01351; RNase_HII; 1. DR SUPFAM; SSF53098; SSF53098; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Manganese; KW Metal-binding; Nuclease; Reference proteome. FT CHAIN 1 209 Ribonuclease HII. FT /FTId=PRO_0000111579. FT METAL 11 11 Divalent metal cation. {ECO:0000250}. FT METAL 12 12 Divalent metal cation. {ECO:0000250}. FT METAL 108 108 Divalent metal cation. {ECO:0000250}. SQ SEQUENCE 209 AA; 23176 MW; 1D3CF3099EA36830 CRC64; MGCVSMTLGI DEAGRGCLAG SLFVAGVACN EKTALEFLKM GLKDSKKLSL KKRFFLEYKI KTHGEVGFFV VKKSANEIDS LGLGACLKLA VQEILENGCS LVDEIKIDGN TAFGLNKRYP HIQTIIKGDE TIAQIAMASV LAKAFKDREM LELHALFKEY GWDKNCGYGT KQHIEAIIKL GATPFHRHSF TLKNRILNPK LLEVEQRLI // ID RNJ_HELPY Reviewed; 689 AA. AC P56185; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 90. DE RecName: Full=Ribonuclease J {ECO:0000255|HAMAP-Rule:MF_01491}; DE Short=RNase J {ECO:0000255|HAMAP-Rule:MF_01491}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01491}; GN Name=rnj {ECO:0000255|HAMAP-Rule:MF_01491}; OrderedLocusNames=HP_1430; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION BY MASS SPECTROMETRY, INTERACTION WITH RHPA, AND RP SUBUNIT. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23093592; DOI=10.1093/nar/gks945; RA Redko Y., Aubert S., Stachowicz A., Lenormand P., Namane A., RA Darfeuille F., Thibonnier M., De Reuse H.; RT "A minimal bacterial RNase J-based degradosome is associated with RT translating ribosomes."; RL Nucleic Acids Res. 41:288-301(2013). CC -!- FUNCTION: An RNase that has 5'-3' exonuclease and possibly CC endoonuclease activity. Involved in maturation of mRNA but CC apparently not rRNA (By similarity). {ECO:0000250}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01491}; CC Note=Binds up to 2 Zn(2+) ions per subunit. It is not clear if CC Zn(2+) or Mg(2+) is physiologically important. {ECO:0000255|HAMAP- CC Rule:MF_01491}; CC -!- SUBUNIT: Homodimer (Probable). Interacts with RNA helicase RhpA. CC {ECO:0000269|PubMed:23093592, ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01491}. CC -!- SIMILARITY: Belongs to the metallo-beta-lactamase superfamily. CC RNA-metabolizing metallo-beta-lactamase-like family. Bacterial CC RNase J subfamily. {ECO:0000255|HAMAP-Rule:MF_01491}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08469.1; -; Genomic_DNA. DR PIR; F64698; F64698. DR RefSeq; NP_208221.1; NC_000915.1. DR RefSeq; WP_000131629.1; NC_018939.1. DR ProteinModelPortal; P56185; -. DR DIP; DIP-3218N; -. DR IntAct; P56185; 14. DR MINT; MINT-177855; -. DR STRING; 85962.HP1430; -. DR PaxDb; P56185; -. DR PRIDE; P56185; -. DR EnsemblBacteria; AAD08469; AAD08469; HP_1430. DR GeneID; 899865; -. DR KEGG; heo:C694_07395; -. DR KEGG; hpy:HP1430; -. DR PATRIC; 20594259; VBIHelPyl33062_1499. DR eggNOG; ENOG4105CN5; Bacteria. DR eggNOG; COG0595; LUCA. DR KO; K12574; -. DR OMA; ATIFVNK; -. DR OrthoDB; EOG6P5ZDC; -. DR BioCyc; HPY:HP1430-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004534; F:5'-3' exoribonuclease activity; IEA:InterPro. DR GO; GO:0004521; F:endoribonuclease activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. DR Gene3D; 3.60.15.10; -; 1. DR HAMAP; MF_01491; RNase_J_bact; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR InterPro; IPR011108; RMMBL. DR InterPro; IPR004613; RNase_J. DR InterPro; IPR030854; RNase_J_bac. DR InterPro; IPR001587; RNase_J_CS. DR PANTHER; PTHR11203:SF22; PTHR11203:SF22; 1. DR Pfam; PF00753; Lactamase_B; 1. DR Pfam; PF07521; RMMBL; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. DR TIGRFAMs; TIGR00649; MG423; 1. DR PROSITE; PS01292; UPF0036; 1. PE 1: Evidence at protein level; KW Complete proteome; Cytoplasm; Endonuclease; Exonuclease; Hydrolase; KW Metal-binding; Nuclease; Reference proteome; RNA-binding; KW rRNA processing; Zinc. FT CHAIN 1 689 Ribonuclease J. FT /FTId=PRO_0000215269. FT REGION 498 502 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 206 206 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 208 208 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 210 210 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 211 211 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 275 275 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 297 297 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 297 297 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. FT METAL 524 524 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01491}. SQ SEQUENCE 689 AA; 77386 MW; 77791982943F5B80 CRC64; MTDNNQNNEN HENSSENSKA DEMRAGAFER FTNRKKRFRE NAQKNAEYSN HEASSHHKKE HRPNKKPNNH HKQKHAKTRN YAQEELDSNK VEGVTEILHV NERGTLGFHK ELKKGVEANN KIQVEHLNPH YKMNLNSKAS VKITPLGGLG EIGGNMMVIE TPKSAIVIDA GMSFPKEGLF GVDILIPDFS YLHQIKDKIA GIIITHAHED HIGATPYLFK ELQFPLYGTP LSLGLIGSKF DEHGLKKYRS YFKIVEKRCP ISVGEFIIEW IHITHSIIDS SALAIQTKAG TIIHTGDFKI DHTPVDNLPT DLYRLAHYGE KGVMLLLSDS TNSHKSGTTP SESTIAPAFD TLFKEAQGRV IMSTFSSNIH RVYQAIQYGI KYNRKIAVIG RSMEKNLDIA RELGYIHLPY QSFIEANEVA KYPDNEILIV TTGSQGETMS ALYRMATDEH RHISIKPNDL VIISAKAIPG NEASVSAVLN FLIKKEAKVA YQEFDNIHVS GHAAQEEQKL MLRLIKPKFF LPVHGEYNHV ARHKQTAISC GVPEKNIYLM EDGDQVEVGP AFIKKVGTIK SGKSYVDNQS NLSIDTSIVQ QREEVASAGV FVATIFVNKN KQALLESSQF SSLGLVGFKD EKPLIKEIQG GLEVLLKSSN AEILNNPKKL EDHTRNFIRK ALFKKFRKYP AIICHAHSF // ID RNPA_HELPY Reviewed; 161 AA. AC P55997; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Ribonuclease P protein component {ECO:0000255|HAMAP-Rule:MF_00227}; DE Short=RNase P protein {ECO:0000255|HAMAP-Rule:MF_00227}; DE Short=RNaseP protein {ECO:0000255|HAMAP-Rule:MF_00227}; DE EC=3.1.26.5 {ECO:0000255|HAMAP-Rule:MF_00227}; DE AltName: Full=Protein C5 {ECO:0000255|HAMAP-Rule:MF_00227}; GN Name=rnpA {ECO:0000255|HAMAP-Rule:MF_00227}; GN OrderedLocusNames=HP_1448; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: RNaseP catalyzes the removal of the 5'-leader sequence CC from pre-tRNA to produce the mature 5'-terminus. It can also CC cleave other RNA substrates such as 4.5S RNA. The protein CC component plays an auxiliary but essential role in vivo by binding CC to the 5'-leader sequence and broadening the substrate specificity CC of the ribozyme. {ECO:0000255|HAMAP-Rule:MF_00227}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage of RNA, removing 5'- CC extranucleotides from tRNA precursor. {ECO:0000255|HAMAP- CC Rule:MF_00227}. CC -!- SUBUNIT: Consists of a catalytic RNA component (M1 or rnpB) and a CC protein subunit. {ECO:0000255|HAMAP-Rule:MF_00227}. CC -!- SIMILARITY: Belongs to the RnpA family. {ECO:0000255|HAMAP- CC Rule:MF_00227}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08489.1; -; Genomic_DNA. DR PIR; H64700; H64700. DR RefSeq; NP_208239.1; NC_000915.1. DR RefSeq; WP_001112484.1; NC_018939.1. DR ProteinModelPortal; P55997; -. DR DIP; DIP-3737N; -. DR IntAct; P55997; 5. DR MINT; MINT-168910; -. DR STRING; 85962.HP1448; -. DR PaxDb; P55997; -. DR PRIDE; P55997; -. DR EnsemblBacteria; AAD08489; AAD08489; HP_1448. DR GeneID; 899846; -. DR KEGG; heo:C694_07500; -. DR KEGG; hpy:HP1448; -. DR PATRIC; 20594303; VBIHelPyl33062_1520. DR eggNOG; ENOG41067YR; Bacteria. DR eggNOG; COG0594; LUCA. DR KO; K03536; -. DR OMA; THTHAKQ; -. DR OrthoDB; EOG6C01C6; -. DR BioCyc; HPY:HP1448-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004526; F:ribonuclease P activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0001682; P:tRNA 5'-leader removal; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR HAMAP; MF_00227; RNase_P; 1. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR000100; RNase_P. DR InterPro; IPR020539; RNase_P_CS. DR Pfam; PF00825; Ribonuclease_P; 1. DR ProDom; PD003629; Ribonuclease_P; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR TIGRFAMs; TIGR00188; rnpA; 1. DR PROSITE; PS00648; RIBONUCLEASE_P; 1. PE 3: Inferred from homology; KW Complete proteome; Endonuclease; Hydrolase; Nuclease; KW Reference proteome; RNA-binding; tRNA processing. FT CHAIN 1 161 Ribonuclease P protein component. FT /FTId=PRO_0000198469. SQ SEQUENCE 161 AA; 18753 MW; A2F561C92AEE9515 CRC64; MPDELRAEKS FPSKPYDSLK NKSEFDRVYQ KGFKKHNPFF SLFVLDLSQE PPKEKAGFKD PLFCRLKDKK TLYLLGLSVS KKVGNAVKRN LIKRRLRSLT LKHAALCQGL ALVFVPRSDC YHLDFWALEK HFLEMLTSIK NYMNKALKDL KKGITHTYAK Q // ID RODA_HELPY Reviewed; 381 AA. AC P56098; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 86. DE RecName: Full=Rod shape-determining protein RodA; GN Name=mrdB; Synonyms=rodA; OrderedLocusNames=HP_0743; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for the maintenance of the rod cell shape. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the SEDS family. RodA subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07794.1; -; Genomic_DNA. DR PIR; G64612; G64612. DR RefSeq; NP_207537.1; NC_000915.1. DR RefSeq; WP_010875539.1; NC_000915.1. DR ProteinModelPortal; P56098; -. DR STRING; 85962.HP0743; -. DR PaxDb; P56098; -. DR PRIDE; P56098; -. DR EnsemblBacteria; AAD07794; AAD07794; HP_0743. DR GeneID; 900223; -. DR KEGG; heo:C694_03820; -. DR KEGG; hpy:HP0743; -. DR eggNOG; ENOG4105CNI; Bacteria. DR eggNOG; COG0772; LUCA. DR KO; K05837; -. DR OMA; FESNSDW; -. DR OrthoDB; EOG68M4JQ; -. DR BioCyc; HPY:HP0743-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0007049; P:cell cycle; IEA:InterPro. DR GO; GO:0051301; P:cell division; IEA:InterPro. DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW. DR InterPro; IPR018365; Cell_cycle_FtsW-rel_CS. DR InterPro; IPR001182; Cell_cycle_FtsW/RodA. DR InterPro; IPR011923; RodA_shape. DR PANTHER; PTHR30474; PTHR30474; 1. DR PANTHER; PTHR30474:SF1; PTHR30474:SF1; 1. DR Pfam; PF01098; FTSW_RODA_SPOVE; 1. DR PROSITE; PS00428; FTSW_RODA_SPOVE; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Cell shape; Complete proteome; KW Membrane; Reference proteome; Transmembrane; Transmembrane helix. FT CHAIN 1 381 Rod shape-determining protein RodA. FT /FTId=PRO_0000062718. FT TRANSMEM 11 31 Helical. {ECO:0000255}. FT TRANSMEM 40 60 Helical. {ECO:0000255}. FT TRANSMEM 66 86 Helical. {ECO:0000255}. FT TRANSMEM 99 119 Helical. {ECO:0000255}. FT TRANSMEM 132 152 Helical. {ECO:0000255}. FT TRANSMEM 156 176 Helical. {ECO:0000255}. FT TRANSMEM 180 200 Helical. {ECO:0000255}. FT TRANSMEM 264 284 Helical. {ECO:0000255}. FT TRANSMEM 297 317 Helical. {ECO:0000255}. FT TRANSMEM 328 348 Helical. {ECO:0000255}. SQ SEQUENCE 381 AA; 43136 MW; ACF415F939D746CA CRC64; MALDKRIWMH FDLLPFVFII PLLVVSFLLI FESSAVLSLK QGVYYAIGFI LFWIVFFIPF RKLGRWLFVF YWACVILLAL VDFMGYSKLG AQRWLVIPFI SITLQPSEPV KIAILLLLAH LIKINPPPFK GYDWGMFLKL SFYICLPAAL ILKQPDLGTA LIVLIMGFGI LLIVGLRTRV WLPLFIALLV ASPIAYHFLH DYQKKRIADF LSEKPNYHVM QSIIAIGSGG FLGKSKEACT QTKFKFLPIA TSDFIFAYFV ERFGFLGAML LFAIYIGLSL HLFFYLFESN SDWFLKIVAL GISILIFVYS SVNIAMTLGL APVVGIPLPL FSYGGSSFIT FMILFGILEN LLAFRYIFGY NSKPSFGNFG FLAQLVRALG S // ID RNY_HELPY Reviewed; 529 AA. AC O25455; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 27-APR-2001, sequence version 2. DT 09-DEC-2015, entry version 100. DE RecName: Full=Ribonuclease Y {ECO:0000255|HAMAP-Rule:MF_00335}; DE Short=RNase Y {ECO:0000255|HAMAP-Rule:MF_00335}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00335}; GN Name=rny {ECO:0000255|HAMAP-Rule:MF_00335}; OrderedLocusNames=HP_0760; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay. CC {ECO:0000255|HAMAP-Rule:MF_00335}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP- CC Rule:MF_00335}; Single-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00335}. CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000255|HAMAP- CC Rule:MF_00335}. CC -!- SIMILARITY: Contains 1 HD domain. {ECO:0000255|HAMAP- CC Rule:MF_00335}. CC -!- SIMILARITY: Contains 1 KH domain. {ECO:0000255|HAMAP- CC Rule:MF_00335}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07808.1; Type=Frameshift; Positions=75, 80; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07808.1; ALT_FRAME; Genomic_DNA. DR PIR; H64614; H64614. DR ProteinModelPortal; O25455; -. DR IntAct; O25455; 6. DR MINT; MINT-171113; -. DR STRING; 85962.HP0760; -. DR PaxDb; O25455; -. DR DNASU; 898987; -. DR EnsemblBacteria; AAD07808; AAD07808; HP_0760. DR KEGG; heo:C694_03910; -. DR PATRIC; 20592809; VBIHelPyl33062_0793. DR eggNOG; ENOG4105E4Y; Bacteria. DR eggNOG; COG1418; LUCA. DR KO; K18682; -. DR OMA; YYARGQA; -. DR OrthoDB; EOG6QCD98; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3210.10; -; 1. DR Gene3D; 3.30.1370.10; -; 1. DR HAMAP; MF_00335; RNase_Y; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR006674; HD_domain. DR InterPro; IPR006675; HDIG_dom. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR017705; Ribonuclease_Y. DR InterPro; IPR022711; RNase_Y_N. DR Pfam; PF12072; DUF3552; 1. DR Pfam; PF01966; HD; 1. DR Pfam; PF00013; KH_1; 1. DR SMART; SM00471; HDc; 1. DR SMART; SM00322; KH; 1. DR SUPFAM; SSF54791; SSF54791; 1. DR TIGRFAMs; TIGR00277; HDIG; 1. DR TIGRFAMs; TIGR03319; RNase_Y; 1. DR PROSITE; PS50084; KH_TYPE_1; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Endonuclease; Hydrolase; Membrane; KW Nuclease; Reference proteome; RNA-binding; Transmembrane; KW Transmembrane helix. FT CHAIN 1 529 Ribonuclease Y. FT /FTId=PRO_0000163774. FT TRANSMEM 4 24 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00335}. FT DOMAIN 216 297 KH. {ECO:0000255|HAMAP-Rule:MF_00335}. FT DOMAIN 343 434 HD. {ECO:0000255|HAMAP-Rule:MF_00335}. SQ SEQUENCE 529 AA; 60130 MW; B6A1809B5E881123 CRC64; MSSGLIYISL EVLVACLITA LVMYYVMKKI YYARGQATLK SASAKAKLME FQAKSFVEAE EIRMKSQECK LQQQYENKNL QLQTHFDKKE AHLKHLEAQH KEFVRDEKRY LEKEKKELEK ERQILEQEKE NFKKQRAVCK ESQAKALDAM LNYMAYTKDE IKSMILEQLE EELEAQKSAL IRRYEKEAKE EGKKKSYAIL AEATARFAGN YAAENLTTRI ALPCSDYIGR VIGKDGKNIE AFKKVSGVDI EFSEDSSELC LSSFNLYRRE VASETLKILI EDGRIQPNRI EEVYHRVARN LEKELLSEGE SVVLELELGA MEDELKILIG KMRYRSSFGQ NALQHSKEVA LLAGLIAEQL GGDKKLARRA GILHDIGKAL TQELGRDHVN LGVEVCKRHK EDPVVINAIY AHHGHEEILS VECASVCAAD ALSAGRPGAR RKSDEEYAKR MQALEEIALE FDGVEKAYAM ESGRELRVIV KSNQVRDNQV PIIARKIAKK IEESAQYVGE VGVQVVRESR FKTTATLKQ // ID RPE_HELPY Reviewed; 217 AA. AC P56188; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Ribulose-phosphate 3-epimerase; DE EC=5.1.3.1; DE AltName: Full=Pentose-5-phosphate 3-epimerase; DE Short=PPE; DE AltName: Full=R5P3E; GN Name=rpe; OrderedLocusNames=HP_1386; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the reversible epimerization of D-ribulose 5- CC phosphate to D-xylulose 5-phosphate. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: D-ribulose 5-phosphate = D-xylulose 5- CC phosphate. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence={ECO:0000250}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 divalent metal cation per subunit. Active with CC Co(2+), Fe(2+), Mn(2+) and Zn(2+). {ECO:0000250}; CC -!- SIMILARITY: Belongs to the ribulose-phosphate 3-epimerase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08425.1; -; Genomic_DNA. DR PIR; B64693; B64693. DR RefSeq; NP_208177.1; NC_000915.1. DR RefSeq; WP_000861474.1; NC_018939.1. DR ProteinModelPortal; P56188; -. DR IntAct; P56188; 1. DR STRING; 85962.HP1386; -. DR PaxDb; P56188; -. DR PRIDE; P56188; -. DR EnsemblBacteria; AAD08425; AAD08425; HP_1386. DR GeneID; 900293; -. DR KEGG; heo:C694_07155; -. DR KEGG; hpy:HP1386; -. DR PATRIC; 20594161; VBIHelPyl33062_1451. DR eggNOG; ENOG4105DJV; Bacteria. DR eggNOG; COG0036; LUCA. DR KO; K01783; -. DR OMA; GANYITF; -. DR OrthoDB; EOG67HK17; -. DR BioCyc; HPY:HP1386-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004750; F:ribulose-phosphate 3-epimerase activity; IEA:UniProtKB-EC. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR026019; Ribul_P_3_epim. DR InterPro; IPR000056; Ribul_P_3_epim-like. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR PANTHER; PTHR11749; PTHR11749; 1. DR Pfam; PF00834; Ribul_P_3_epim; 1. DR PIRSF; PIRSF001461; RPE; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR01163; rpe; 1. DR PROSITE; PS01085; RIBUL_P_3_EPIMER_1; 1. DR PROSITE; PS01086; RIBUL_P_3_EPIMER_2; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism; Cobalt; Complete proteome; Iron; Isomerase; KW Manganese; Metal-binding; Reference proteome; Zinc. FT CHAIN 1 217 Ribulose-phosphate 3-epimerase. FT /FTId=PRO_0000171572. FT REGION 138 141 Substrate binding. {ECO:0000250}. FT REGION 193 194 Substrate binding. {ECO:0000250}. FT ACT_SITE 31 31 Proton acceptor. {ECO:0000250}. FT ACT_SITE 171 171 Proton donor. {ECO:0000250}. FT METAL 29 29 Divalent metal cation. {ECO:0000250}. FT METAL 31 31 Divalent metal cation. {ECO:0000250}. FT METAL 62 62 Divalent metal cation. {ECO:0000250}. FT METAL 171 171 Divalent metal cation. {ECO:0000250}. FT BINDING 6 6 Substrate. {ECO:0000250}. FT BINDING 62 62 Substrate. {ECO:0000250}. FT BINDING 173 173 Substrate; via amide nitrogen. FT {ECO:0000250}. SQ SEQUENCE 217 AA; 24045 MW; 7CAA9E1E5DC9006F CRC64; MKVAPSLLSA DFMHLAKEIE SVSNADFLHV DVMDGHYVPN LTMGPVVLEN VTQMSQVPLD VHLMVENASF FAELFAPLKP QIISIHAENE KHPHRVLQLI KNLGITPGIV LNPHTHEESI KYLLESVGLV LLMSVNPGFG GQKFLDLVLE KCLKVKELIK RYNPSCLLEV DGGVNDKNIF ELQQAGVDVV VSGSYIFKSK DRKLAIEGLQ NVRQSLA // ID RPOZ_HELPY Reviewed; 74 AA. AC P60325; O25467; Q9ZL67; DT 02-FEB-2004, integrated into UniProtKB/Swiss-Prot. DT 02-FEB-2004, sequence version 1. DT 11-MAY-2016, entry version 72. DE RecName: Full=DNA-directed RNA polymerase subunit omega; DE Short=RNAP omega subunit; DE EC=2.7.7.6; DE AltName: Full=RNA polymerase omega subunit; DE AltName: Full=Transcriptase subunit omega; GN Name=rpoZ; OrderedLocusNames=HP_0776; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Promotes RNA polymerase assembly. Latches the N- and C- CC terminal regions of the beta' subunit thereby facilitating its CC interaction with the beta and alpha subunits (By similarity). CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta/beta' CC and 1 omega subunit. When a sigma factor is associated with the CC core the holoenzyme is formed, which can initiate transcription CC (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the RNA polymerase subunit omega family. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07826.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07826.1; ALT_INIT; Genomic_DNA. DR PIR; H64616; H64616. DR RefSeq; NP_207569.1; NC_000915.1. DR RefSeq; WP_000712202.1; NC_018939.1. DR IntAct; P60325; 9. DR MINT; MINT-173310; -. DR STRING; 85962.HP0776; -. DR PaxDb; P60325; -. DR PRIDE; P60325; -. DR EnsemblBacteria; AAD07826; AAD07826; HP_0776. DR GeneID; 898979; -. DR KEGG; heo:C694_03985; -. DR KEGG; hpy:HP0776; -. DR PATRIC; 20592841; VBIHelPyl33062_0809. DR eggNOG; COG1758; LUCA. DR KO; K03060; -. DR OMA; PLVDMDV; -. DR OrthoDB; EOG6Q5NV5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.940.10; -; 1. DR HAMAP; MF_00366; RNApol_bact_RpoZ; 1. DR InterPro; IPR003716; DNA-dir_RNA_pol_omega. DR InterPro; IPR006110; Pol_omega/K/RPB6. DR InterPro; IPR012293; RNAP_RPB6_omega. DR Pfam; PF01192; RNA_pol_Rpb6; 1. DR SMART; SM01409; RNA_pol_Rpb6; 1. DR SUPFAM; SSF63562; SSF63562; 1. DR TIGRFAMs; TIGR00690; rpoZ; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-directed RNA polymerase; KW Nucleotidyltransferase; Reference proteome; Transcription; KW Transferase. FT CHAIN 1 74 DNA-directed RNA polymerase subunit FT omega. FT /FTId=PRO_0000128943. SQ SEQUENCE 74 AA; 8505 MW; C91E5A8499BEEE4A CRC64; MKKERTESLV AQALKNIGND RYMLDNLVFA RVKQLNAGAK TLVNMDPKRH KLVDIAIREI AEGKIDIDRI DERN // ID RPPH_HELPY Reviewed; 155 AA. AC O25826; DT 11-JAN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=RNA pyrophosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00298}; DE EC=3.6.1.- {ECO:0000255|HAMAP-Rule:MF_00298}; DE AltName: Full=(Di)nucleoside polyphosphate hydrolase {ECO:0000255|HAMAP-Rule:MF_00298}; GN Name=rppH {ECO:0000255|HAMAP-Rule:MF_00298}; GN Synonyms=nudH {ECO:0000255|HAMAP-Rule:MF_00298}; GN OrderedLocusNames=HP_1228; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Accelerates the degradation of transcripts by removing CC pyrophosphate from the 5'-end of triphosphorylated RNA, leading to CC a more labile monophosphorylated state that can stimulate CC subsequent ribonuclease cleavage. {ECO:0000255|HAMAP- CC Rule:MF_00298}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00298}; CC -!- SIMILARITY: Belongs to the Nudix hydrolase family. RppH subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00298}. CC -!- SIMILARITY: Contains 1 nudix hydrolase domain. {ECO:0000255|HAMAP- CC Rule:MF_00298}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08273.1; -; Genomic_DNA. DR PIR; D64673; D64673. DR RefSeq; NP_208020.1; NC_000915.1. DR RefSeq; WP_000902563.1; NC_018939.1. DR ProteinModelPortal; O25826; -. DR IntAct; O25826; 2. DR STRING; 85962.HP1228; -. DR PaxDb; O25826; -. DR PRIDE; O25826; -. DR EnsemblBacteria; AAD08273; AAD08273; HP_1228. DR GeneID; 898789; -. DR KEGG; heo:C694_06340; -. DR KEGG; hpy:HP1228; -. DR PATRIC; 20593827; VBIHelPyl33062_1284. DR eggNOG; ENOG4105EJF; Bacteria. DR eggNOG; COG0494; LUCA. DR KO; K08311; -. DR OMA; ERNEVFW; -. DR OrthoDB; EOG6Q2SKR; -. DR BioCyc; HPY:HP1228-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.79.10; -; 1. DR HAMAP; MF_00298; Nudix_RppH; 1. DR InterPro; IPR020476; Nudix_hydrolase. DR InterPro; IPR020084; NUDIX_hydrolase_CS. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR InterPro; IPR022927; RppH. DR Pfam; PF00293; NUDIX; 1. DR PRINTS; PR00502; NUDIXFAMILY. DR SUPFAM; SSF55811; SSF55811; 1. DR PROSITE; PS51462; NUDIX; 1. DR PROSITE; PS00893; NUDIX_BOX; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Reference proteome. FT CHAIN 1 155 RNA pyrophosphohydrolase. FT /FTId=PRO_0000057010. FT DOMAIN 5 147 Nudix hydrolase. {ECO:0000255|HAMAP- FT Rule:MF_00298}. FT MOTIF 42 63 Nudix box. SQ SEQUENCE 155 AA; 18550 MW; B1C4E814116D8F0E CRC64; MLHKKYRPNV AAIIMSPDYP NACEVFIAER IDIEGAWQFP QGGIDEGETP LEALHRELLE EIGTNEIEIL AQYPRWIAYD FPSNMEHKFY SFDGQKQRYF LVRLKHTNNI DLNKHTPEFR AYQFIHLKDL LKRIVPFKRQ VYRQVIAYFK REGYL // ID RP54_HELPY Reviewed; 414 AA. AC P56143; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=RNA polymerase sigma-54 factor; GN Name=rpoN; OrderedLocusNames=HP_0714; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Sigma factors are initiation factors that promote the CC attachment of RNA polymerase to specific initiation sites and are CC then released. CC -!- SIMILARITY: Belongs to the sigma-54 factor family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07764.1; -; Genomic_DNA. DR PIR; B64609; B64609. DR RefSeq; NP_207508.1; NC_000915.1. DR RefSeq; WP_000996418.1; NC_018939.1. DR ProteinModelPortal; P56143; -. DR DIP; DIP-3064N; -. DR IntAct; P56143; 11. DR MINT; MINT-168088; -. DR STRING; 85962.HP0714; -. DR PaxDb; P56143; -. DR PRIDE; P56143; -. DR EnsemblBacteria; AAD07764; AAD07764; HP_0714. DR GeneID; 900248; -. DR KEGG; heo:C694_03675; -. DR KEGG; hpy:HP0714; -. DR PATRIC; 20592715; VBIHelPyl33062_0746. DR eggNOG; ENOG4105DTW; Bacteria. DR eggNOG; COG1508; LUCA. DR KO; K03092; -. DR OMA; GWLPILQ; -. DR OrthoDB; EOG60CWN7; -. DR BioCyc; HPY:HP0714-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR InterPro; IPR000394; RNA_pol_sigma_54. DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd. DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd. DR Pfam; PF00309; Sigma54_AID; 1. DR Pfam; PF04963; Sigma54_CBD; 1. DR Pfam; PF04552; Sigma54_DBD; 1. DR PIRSF; PIRSF000774; RpoN; 1. DR PRINTS; PR00045; SIGMA54FCT. DR TIGRFAMs; TIGR02395; rpoN_sigma; 1. DR PROSITE; PS00717; SIGMA54_1; 1. DR PROSITE; PS00718; SIGMA54_2; 1. DR PROSITE; PS50044; SIGMA54_3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; DNA-directed RNA polymerase; KW Nucleotidyltransferase; Reference proteome; Sigma factor; KW Transcription; Transcription regulation; Transferase. FT CHAIN 1 414 RNA polymerase sigma-54 factor. FT /FTId=PRO_0000205531. FT DNA_BIND 301 320 H-T-H motif. {ECO:0000250}. FT MOTIF 387 395 RPON box. SQ SEQUENCE 414 AA; 48173 MW; C7781CE32B5B04FE CRC64; MAILRANLSP KNKLNATLKG WLPILQSELE DLEEVLKQNA LDNPLIKIEN KRIKNFSDRF SAKKSSDHLE NFATASKSLF ETLEAQIIPP LFPTETSQKI AMDIISGLNN EGYFEENIEE RARILGVESE VYEKVRKRFS YLNPAGIGAK DVKESFLFQL ESRELDDNEL YEETRKIILN LEKHHEFSKD FYYEKALKIL KSFKNPPAIE FLEKEIEVIP ELFIVEVDNG IIVRLNDESY PTISLEENRF KDSGYLKEKL KEAKDLIDAL NLRKATIYKI GLMLLEYQYD FFKGKELRPL KLLDLANEFN HSVSTISRAI SNKYLACERG VFPIKHFFSI ALDNSETSNA VIKDYLLELI KNEDKKEPLS DAKILELIEE KFHLKMVRRT ITKYRQLLNI ASSSERKRLY LMRA // ID RPOD_HELPY Reviewed; 671 AA. AC P55993; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 13-APR-2016, entry version 107. DE RecName: Full=RNA polymerase sigma factor RpoD {ECO:0000255|HAMAP-Rule:MF_00963}; DE AltName: Full=Sigma-70 {ECO:0000255|HAMAP-Rule:MF_00963}; GN Name=rpoD {ECO:0000255|HAMAP-Rule:MF_00963}; GN OrderedLocusNames=HP_0088; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Sigma factors are initiation factors that promote the CC attachment of RNA polymerase to specific initiation sites and are CC then released. This sigma factor is the primary sigma factor CC during exponential growth. {ECO:0000255|HAMAP-Rule:MF_00963}. CC -!- SUBUNIT: Interacts transiently with the RNA polymerase catalytic CC core. {ECO:0000255|HAMAP-Rule:MF_00963}. CC -!- INTERACTION: CC O34754:HP_1535; NbExp=4; IntAct=EBI-7494721, EBI-7707586; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00963}. CC -!- SIMILARITY: Belongs to the sigma-70 factor family. RpoD/SigA CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00963}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07156.1; -; Genomic_DNA. DR PIR; H64530; H64530. DR RefSeq; NP_206888.1; NC_000915.1. DR RefSeq; WP_000725929.1; NC_018939.1. DR ProteinModelPortal; P55993; -. DR DIP; DIP-3055N; -. DR IntAct; P55993; 14. DR MINT; MINT-163797; -. DR STRING; 85962.HP0088; -. DR PaxDb; P55993; -. DR PRIDE; P55993; -. DR EnsemblBacteria; AAD07156; AAD07156; HP_0088. DR GeneID; 898992; -. DR KEGG; heo:C694_00430; -. DR KEGG; hpy:HP0088; -. DR PATRIC; 20591385; VBIHelPyl33062_0093. DR eggNOG; ENOG4105DG1; Bacteria. DR eggNOG; COG0568; LUCA. DR KO; K03086; -. DR OMA; DKAKKEW; -. DR OrthoDB; EOG6XHC70; -. DR BioCyc; HPY:HP0088-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0001123; P:transcription initiation from bacterial-type RNA polymerase promoter; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 2. DR HAMAP; MF_00963; Sigma70_RpoD_SigA; 1. DR InterPro; IPR014284; RNA_pol_sigma-70_dom. DR InterPro; IPR000943; RNA_pol_sigma70. DR InterPro; IPR009042; RNA_pol_sigma70_r1_2. DR InterPro; IPR007627; RNA_pol_sigma70_r2. DR InterPro; IPR007624; RNA_pol_sigma70_r3. DR InterPro; IPR007630; RNA_pol_sigma70_r4. DR InterPro; IPR013325; RNA_pol_sigma_r2. DR InterPro; IPR013324; RNA_pol_sigma_r3_r4. DR InterPro; IPR012760; RNA_pol_sigma_RpoD_C. DR InterPro; IPR028630; Sigma70_RpoD. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00140; Sigma70_r1_2; 1. DR Pfam; PF04542; Sigma70_r2; 1. DR Pfam; PF04539; Sigma70_r3; 1. DR Pfam; PF04545; Sigma70_r4; 1. DR PRINTS; PR00046; SIGMA70FCT. DR SUPFAM; SSF88659; SSF88659; 2. DR SUPFAM; SSF88946; SSF88946; 1. DR TIGRFAMs; TIGR02393; RpoD_Cterm; 1. DR TIGRFAMs; TIGR02937; sigma70-ECF; 1. DR PROSITE; PS00715; SIGMA70_1; 1. DR PROSITE; PS00716; SIGMA70_2; 1. PE 1: Evidence at protein level; KW Complete proteome; Cytoplasm; DNA-binding; Reference proteome; KW Sigma factor; Transcription; Transcription regulation. FT CHAIN 1 671 RNA polymerase sigma factor RpoD. FT /FTId=PRO_0000093890. FT DNA_BIND 631 650 H-T-H motif. {ECO:0000255|HAMAP- FT Rule:MF_00963}. FT REGION 436 506 Sigma-70 factor domain-2. FT {ECO:0000255|HAMAP-Rule:MF_00963}. FT REGION 515 591 Sigma-70 factor domain-3. FT {ECO:0000255|HAMAP-Rule:MF_00963}. FT REGION 604 658 Sigma-70 factor domain-4. FT {ECO:0000255|HAMAP-Rule:MF_00963}. FT MOTIF 460 463 Interaction with polymerase core subunit FT RpoC. SQ SEQUENCE 671 AA; 77737 MW; 25992A478D90A27A CRC64; MKKKANEEKA QKRAKTEAKA EATQENKTKE NNKAKESKIK ESKIKEAKAK EPIPVKKLSF NEALEELFAN SLSDCVSYES IIQISAKVPT LAQIKKIKEL CQKYQKKLVS SSEYAKKLNA IDKIKKTEEK QKVLDEELED GYDFLKEKDF LEWSRSDSPV RMYLREMGDI KLLSKDEEIE LSKQIRLGED IILDAICSVP YLIDFIYAYK DALINRERRV KELFRSFDDD DENSVSDSKK DEDNEEDEEN EERKKVVSEK DKKRVEKVQE SFKALDKAKK EWLKALEAPI DEREDELVRS LTLAYKRQTL KDRLYDLEPT SKLINELVKT METTLKSGDG FEKELKRLEY KLPLFNDTLI ANHKKILANI TNMTKEDIIA QVPEATMVSV YMDLKKLFLT KEASEEGFDL APNKLKEILE QIKRGKLISD RAKNKMAKSN LRLVVSIAKR FTSRGLPFLD LIQEGNIGLM KAVDKFEHEK GFKFSTYATW WIKQAISRAI ADQARTIRIP IHMIDTINRI NKVMRKHIQE NGKEPDLEVV AEEVGLSLDK VKNVIKVTKE PISLETPVGN DDDGKFGDFV EDKNIVSSID HIMREDLKAQ IESVLDQLNE REKAVIRMRF GLLDDESDRT LEEIGKELNV TRERVRQIES SAIKKLRSPQ YGRILRNYLR I // ID RRF_HELPY Reviewed; 185 AA. AC P56398; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Ribosome-recycling factor {ECO:0000255|HAMAP-Rule:MF_00040}; DE Short=RRF {ECO:0000255|HAMAP-Rule:MF_00040}; DE AltName: Full=Ribosome-releasing factor {ECO:0000255|HAMAP-Rule:MF_00040}; GN Name=frr {ECO:0000255|HAMAP-Rule:MF_00040}; OrderedLocusNames=HP_1256; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Responsible for the release of ribosomes from messenger CC RNA at the termination of protein biosynthesis. May increase the CC efficiency of translation by recycling ribosomes from one round of CC translation to another. {ECO:0000255|HAMAP-Rule:MF_00040}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00040}. CC -!- SIMILARITY: Belongs to the RRF family. {ECO:0000255|HAMAP- CC Rule:MF_00040}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08302.1; -; Genomic_DNA. DR PIR; H64676; H64676. DR RefSeq; NP_208048.1; NC_000915.1. DR RefSeq; WP_000938332.1; NC_018939.1. DR ProteinModelPortal; P56398; -. DR DIP; DIP-3584N; -. DR IntAct; P56398; 1. DR MINT; MINT-183080; -. DR STRING; 85962.HP1256; -. DR PaxDb; P56398; -. DR PRIDE; P56398; -. DR EnsemblBacteria; AAD08302; AAD08302; HP_1256. DR GeneID; 900278; -. DR KEGG; heo:C694_06490; -. DR KEGG; hpy:HP1256; -. DR PATRIC; 20593889; VBIHelPyl33062_1315. DR eggNOG; ENOG4108VCV; Bacteria. DR eggNOG; COG0233; LUCA. DR KO; K02838; -. DR OMA; VQPWEKK; -. DR OrthoDB; EOG6SV5F9; -. DR BioCyc; HPY:HP1256-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0006415; P:translational termination; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.132.20; -; 1. DR HAMAP; MF_00040; RRF; 1. DR InterPro; IPR002661; Ribosome_recyc_fac. DR InterPro; IPR023584; Ribosome_recyc_fac_dom. DR PANTHER; PTHR20982; PTHR20982; 1. DR Pfam; PF01765; RRF; 1. DR SUPFAM; SSF55194; SSF55194; 1. DR TIGRFAMs; TIGR00496; frr; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 185 Ribosome-recycling factor. FT /FTId=PRO_0000167471. SQ SEQUENCE 185 AA; 20915 MW; 126AA4597C8CDFFE CRC64; MLQAIYNETK DLMQKSIQAL NRDFSTLRSA KVSVNILDHI KVDYYGTPTA LNQVGSVMSL DATTLQISPW EKNLLKEIER SIQEANIGVN PNNDGETIKL FFPPMTSEQR KLIAKDAKAM GEKAKVAVRN IRQDANNQVK KLEKDKEISE DESKKAQEQI QKITDEAIKK IDESVKNKED AILKV // ID RS10_HELPY Reviewed; 104 AA. AC P66328; P56017; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-MAY-2016, entry version 63. DE RecName: Full=30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; GN Name=rpsJ {ECO:0000255|HAMAP-Rule:MF_00508}; GN OrderedLocusNames=HP_1320; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the binding of tRNA to the ribosomes. CC {ECO:0000255|HAMAP-Rule:MF_00508}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_00508}. CC -!- SIMILARITY: Belongs to the ribosomal protein S10P family. CC {ECO:0000255|HAMAP-Rule:MF_00508}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08359.1; -; Genomic_DNA. DR PIR; H64684; H64684. DR RefSeq; NP_208112.1; NC_000915.1. DR RefSeq; WP_000411561.1; NC_018939.1. DR ProteinModelPortal; P66328; -. DR IntAct; P66328; 1. DR STRING; 85962.HP1320; -. DR PaxDb; P66328; -. DR PRIDE; P66328; -. DR EnsemblBacteria; AAD08359; AAD08359; HP_1320. DR GeneID; 900334; -. DR KEGG; heo:C694_06815; -. DR KEGG; hpy:HP1320; -. DR PATRIC; 20594021; VBIHelPyl33062_1381. DR eggNOG; ENOG4108Z10; Bacteria. DR eggNOG; COG0051; LUCA. DR KO; K02946; -. DR OMA; LANMDIP; -. DR OrthoDB; EOG6VXFHB; -. DR BioCyc; HPY:HP1320-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.600; -; 1. DR HAMAP; MF_00508; Ribosomal_S10; 1. DR InterPro; IPR001848; Ribosomal_S10. DR InterPro; IPR018268; Ribosomal_S10_CS. DR InterPro; IPR027486; Ribosomal_S10_dom. DR PANTHER; PTHR11700; PTHR11700; 1. DR Pfam; PF00338; Ribosomal_S10; 1. DR PRINTS; PR00971; RIBOSOMALS10. DR SMART; SM01403; Ribosomal_S10; 1. DR SUPFAM; SSF54999; SSF54999; 1. DR TIGRFAMs; TIGR01049; rpsJ_bact; 1. DR PROSITE; PS00361; RIBOSOMAL_S10; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 104 30S ribosomal protein S10. FT /FTId=PRO_0000146539. SQ SEQUENCE 104 AA; 11918 MW; 7EEA60A965B41CE1 CRC64; MEKIRLKLKA YDHRVLDRSV VAIVEAVKRS GSEIRGPIPL PTKNKRYTVL RSPHVNKDSR EQFEIRVYSR LIDIISATPE TVDSLMKLDL APEVDVEVTS METK // ID RPOA_HELPY Reviewed; 344 AA. AC P56001; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; DE Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059}; DE AltName: Full=RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; DE AltName: Full=Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; GN Name=rpoA {ECO:0000255|HAMAP-Rule:MF_00059}; GN OrderedLocusNames=HP_1293; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000255|HAMAP-Rule:MF_00059}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000255|HAMAP-Rule:MF_00059}. CC -!- SUBUNIT: Homodimer. The RNAP catalytic core consists of 2 alpha, 1 CC beta, 1 beta' and 1 omega subunit. When a sigma factor is CC associated with the core the holoenzyme is formed, which can CC initiate transcription. {ECO:0000255|HAMAP-Rule:MF_00059}. CC -!- DOMAIN: The N-terminal domain is essential for RNAP assembly and CC basal transcription, whereas the C-terminal domain is involved in CC interaction with transcriptional regulators and with upstream CC promoter elements. {ECO:0000255|HAMAP-Rule:MF_00059}. CC -!- SIMILARITY: Belongs to the RNA polymerase alpha chain family. CC {ECO:0000255|HAMAP-Rule:MF_00059}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08336.1; -; Genomic_DNA. DR PIR; E64681; E64681. DR RefSeq; NP_208085.1; NC_000915.1. DR RefSeq; WP_000864547.1; NC_018939.1. DR ProteinModelPortal; P56001; -. DR DIP; DIP-3396N; -. DR IntAct; P56001; 2. DR MINT; MINT-172290; -. DR STRING; 85962.HP1293; -. DR PaxDb; P56001; -. DR PRIDE; P56001; -. DR EnsemblBacteria; AAD08336; AAD08336; HP_1293. DR GeneID; 898788; -. DR KEGG; heo:C694_06680; -. DR KEGG; hpy:HP1293; -. DR PATRIC; 20593967; VBIHelPyl33062_1354. DR eggNOG; ENOG4105CTF; Bacteria. DR eggNOG; COG0202; LUCA. DR KO; K03040; -. DR OMA; LMKFRNF; -. DR OrthoDB; EOG68WR84; -. DR BioCyc; HPY:HP1293-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR Gene3D; 2.170.120.12; -; 1. DR HAMAP; MF_00059; RNApol_bact_RpoA; 1. DR InterPro; IPR011262; DNA-dir_RNA_pol_insert. DR InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3. DR InterPro; IPR011773; DNA-dir_RpoA. DR InterPro; IPR009025; RBP11-like_dimer. DR InterPro; IPR011260; RNAP_asu_C. DR Pfam; PF01000; RNA_pol_A_bac; 1. DR Pfam; PF03118; RNA_pol_A_CTD; 1. DR Pfam; PF01193; RNA_pol_L; 1. DR ProDom; PD001179; RNAP_asu_C; 1. DR SMART; SM00662; RPOLD; 1. DR SUPFAM; SSF55257; SSF55257; 2. DR SUPFAM; SSF56553; SSF56553; 1. DR TIGRFAMs; TIGR02027; rpoA; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-directed RNA polymerase; KW Nucleotidyltransferase; Reference proteome; Transcription; KW Transferase. FT CHAIN 1 344 DNA-directed RNA polymerase subunit FT alpha. FT /FTId=PRO_0000175316. FT REGION 1 238 Alpha N-terminal domain (alpha-NTD). FT {ECO:0000255|HAMAP-Rule:MF_00059}. FT REGION 254 344 Alpha C-terminal domain (alpha-CTD). FT {ECO:0000255|HAMAP-Rule:MF_00059}. SQ SEQUENCE 344 AA; 38499 MW; 0F812B0020DF7414 CRC64; MKVIKTAPLI PSEIKVLEKE GNRVKISLAP FEFGYAVTLA HPIRRLLLLS SVGYAPVGLK IEGVHHEFDS LRGVTEDVSL FIMNLKNIRF IAKALVGQDS SLENQSVVVD YSFKGPMELR ARDLNSEQIE IVNPEMPLAT INEDAQLNFS LIIYKGMGYV PSENTRELMP EGYMPLDGSF TPIKKVVYEI ENVLVEGDPN YEKIIFDIET DGQIDPYKAF LSAVKVMSKQ LGVFGERPIA NTEYSGDYAQ RDDAKDLSAK IESMNLSARC FNCLDKIGIK YVGELVLMSE EELKGVKNMG KKSYDEIAEK LNDLGYPVGT ELSPEQRESL KKRLEKLEDK GGND // ID RPOBC_HELPY Reviewed; 2890 AA. AC O25806; Q9R3R4; DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 112. DE RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; DE EC=2.7.7.6; DE Includes: DE RecName: Full=DNA-directed RNA polymerase subunit beta; DE AltName: Full=RNA polymerase subunit beta; DE AltName: Full=Transcriptase subunit beta; DE Includes: DE RecName: Full=DNA-directed RNA polymerase subunit beta'; DE AltName: Full=RNA polymerase subunit beta'; DE AltName: Full=Transcriptase subunit beta'; GN Name=rpoBC; OrderedLocusNames=HP_1198; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1308-1465, PROTEIN SEQUENCE OF RP 2040-2054, AND DETECTION OF FUSION PROTEIN. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638, HP1, J-116, and SS1; RX PubMed=9677352; DOI=10.1074/jbc.273.31.19371; RA Zakharova N., Hoffman P.S., Berg D.E., Severinov K.; RT "The largest subunits of RNA polymerase from gastric helicobacters are RT tethered."; RL J. Biol. Chem. 273:19371-19374(1998). RN [3] RP DIVISION OF PROTEIN INTO TWO SMALLER PROTEINS. RC STRAIN=ATCC 700392 / 26695, and HP1; RX PubMed=10216866; DOI=10.1046/j.1365-2958.1999.01336.x; RA Raudonikiene A., Zakharova N., Su W.W., Jeong J.-Y., Bryden L., RA Hoffman P.S., Berg D.E., Severinov K.; RT "Helicobacter pylori with separate beta- and beta'-subunits of RNA RT polymerase is viable and can colonize conventional mice."; RL Mol. Microbiol. 32:131-138(1999). CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta/beta' CC and 1 omega subunit. When a sigma factor is associated with the CC core the holoenzyme is formed, which can initiate transcription CC (By similarity). {ECO:0000250}. CC -!- INTERACTION: CC O25676:HP_1032; NbExp=3; IntAct=EBI-7493676, EBI-527933; CC -!- PTM: The N-terminus is blocked. CC -!- MISCELLANEOUS: Fusion of rpoB and rpoC occurs naturally in CC Helicobacter species and at least some Wolbachia; the protein has CC been artificially split in two in H.pylori. The split protein CC seems to function normally. CC -!- SIMILARITY: In the N-terminal section; belongs to the RNA CC polymerase beta chain family. {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the RNA CC polymerase beta' chain family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08242.1; -; Genomic_DNA. DR EMBL; AF068776; AAC25190.1; -; Genomic_DNA. DR EMBL; AF068254; AAC25712.1; -; Genomic_DNA. DR EMBL; AF068774; AAC25188.1; -; Genomic_DNA. DR EMBL; AF068775; AAC25189.1; -; Genomic_DNA. DR PIR; F64669; F64669. DR RefSeq; NP_207989.1; NC_000915.1. DR RefSeq; WP_000037869.1; NC_018939.1. DR ProteinModelPortal; O25806; -. DR SMR; O25806; 2275-2308. DR DIP; DIP-3257N; -. DR IntAct; O25806; 35. DR MINT; MINT-159961; -. DR STRING; 85962.HP1198; -. DR PaxDb; O25806; -. DR PRIDE; O25806; -. DR EnsemblBacteria; AAD08242; AAD08242; HP_1198. DR GeneID; 899960; -. DR KEGG; heo:C694_06195; -. DR KEGG; hpy:HP1198; -. DR PATRIC; 20593753; VBIHelPyl33062_1254. DR eggNOG; ENOG4105D27; Bacteria. DR eggNOG; COG0085; LUCA. DR eggNOG; COG0086; LUCA. DR KO; K13797; -. DR OMA; KIDDRDH; -. DR OrthoDB; EOG6M9DS6; -. DR BioCyc; HPY:HP1198-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.30.150.10; -; 1. DR Gene3D; 2.40.270.10; -; 2. DR Gene3D; 2.40.50.150; -; 2. DR Gene3D; 3.90.1110.10; -; 2. DR HAMAP; MF_01321; RNApol_bact_RpoB; 1. DR HAMAP; MF_01322; RNApol_bact_RpoC; 1. DR InterPro; IPR010243; DNA-dir_RNA_pol_bsu. DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1. DR InterPro; IPR015712; DNA-dir_RNA_pol_su2. DR InterPro; IPR007120; DNA-dir_RNA_pol_su2_6. DR InterPro; IPR012754; DNA-dir_RpoC_beta_prime. DR InterPro; IPR000722; RNA_pol_asu. DR InterPro; IPR007121; RNA_pol_bsu_CS. DR InterPro; IPR007644; RNA_pol_bsu_protrusion. DR InterPro; IPR006592; RNA_pol_N. DR InterPro; IPR007080; RNA_pol_Rpb1_1. DR InterPro; IPR007066; RNA_pol_Rpb1_3. DR InterPro; IPR007083; RNA_pol_Rpb1_4. DR InterPro; IPR007081; RNA_pol_Rpb1_5. DR InterPro; IPR007642; RNA_pol_Rpb2_2. DR InterPro; IPR007645; RNA_pol_Rpb2_3. DR InterPro; IPR007641; RNA_pol_Rpb2_7. DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold. DR PANTHER; PTHR20856; PTHR20856; 4. DR Pfam; PF04997; RNA_pol_Rpb1_1; 1. DR Pfam; PF00623; RNA_pol_Rpb1_2; 1. DR Pfam; PF04983; RNA_pol_Rpb1_3; 1. DR Pfam; PF05000; RNA_pol_Rpb1_4; 1. DR Pfam; PF04998; RNA_pol_Rpb1_5; 1. DR Pfam; PF04563; RNA_pol_Rpb2_1; 1. DR Pfam; PF04561; RNA_pol_Rpb2_2; 2. DR Pfam; PF04565; RNA_pol_Rpb2_3; 1. DR Pfam; PF10385; RNA_pol_Rpb2_45; 1. DR Pfam; PF00562; RNA_pol_Rpb2_6; 1. DR Pfam; PF04560; RNA_pol_Rpb2_7; 1. DR SMART; SM00663; RPOLA_N; 1. DR TIGRFAMs; TIGR02013; rpoB; 1. DR TIGRFAMs; TIGR02386; rpoC_TIGR; 1. DR PROSITE; PS01166; RNA_POL_BETA; 1. PE 1: Evidence at protein level; KW Complete proteome; Direct protein sequencing; KW DNA-directed RNA polymerase; Multifunctional enzyme; KW Nucleotidyltransferase; Reference proteome; Transcription; KW Transferase. FT CHAIN 1 2890 Bifunctional DNA-directed RNA polymerase FT subunit beta-beta'. FT /FTId=PRO_0000048005. FT REGION 1 1377 DNA-directed RNA polymerase subunit beta. FT REGION 1384 2890 DNA-directed RNA polymerase subunit FT beta'. SQ SEQUENCE 2890 AA; 323575 MW; 3B733A607AF07C98 CRC64; MSKKIPLKNR LRADFTKTPT DLEVPNLLLL QRDSYDSFLY SKEGKESGIE KVFKSIFPIQ DEHNRITLEY AGCEFGKSKY TVREAMERGI TYSIPLKIKV RLILWEKDTK SGEKNGIKDI KEQSIFIREI PLMTERTSFI INGVERVVVN QLHRSPGVIF KEEESSTSLN KLIYTGQIIP DRGSWLYFEY DSKDVLYARI NKRRKVPVTI LFRAMDYQKQ DIIKMFYPLV KVRYENDKYL IPFASLDANQ RMEFDLKDPQ GKVILLAGKK LTSRKIKELK ENHLEWVEYP MDILLNRHLA EPVMVGKEVL LDMLTQLDKN KLEKIHDLGV QEFVIINDLA LGHDASIIQS FSADSESLKL LKQTEKIDDE NALAAIRIHK VMKPGDPVTT EVAKQFVKKL FFDPERYDLT MVGRMKMNHK LGLHVPDYIT TLTHEDIITT VKYLMKIKNN QGKIDDRDHL GNRRIRAVGE LLANELHSGL VKMQKTIKDK LTTMSGAFDS LMPHDLVNSK MITSTIMEFF MGGQLSQFMD QTNPLSEVTH KRRLSALGEG GLVKDRVGFE ARDVHPTHYG RICPIETPEG QNIGLINTLS TFTRVNDLGF IEAPYKKVVD GKVVGETIYL TAIQEDSHII APASTPIDEE GNILGDLIET RVEGEIVLNE KSKVTLMDLS SSMLVGVAAS LIPFLEHDDA NRALMGTNMQ RQAVPLLRSD APIVGTGIEK IIARDSWGAI KANRAGVVEK IDSKNIYILG ESKEEAYIDA YSLQKNLRTN QNTSFNQVPI VKVGDKVGAG QIIADGPSMD RGELALGKNV RVAFMPWNGY NFEDAIVVSE CITKDDIFTS THIYEKEVDA RELKHGVEEF TADIPDVKEE ALAHLDESGI VKVGTYVSAG MILVGKTSPK GEIKSTPEER LLRAIFGDKA GHVVNKSLYC PPSLEGTVID VKVFTKKGYE KDARVLSAYE EEKAKLDMEH FDRLTMLNRE ELLRVSSLLS QAILEEPFSH NGKDYKEGDQ IPKEEIASIN RFTLASLVKK YSKEVQNHYE ITKNNFLEQK KVLGEEHEEK LSILEKDDIL PNGVIKKVKL YIATKRKLKV GDKMAGRHGN KGIVSNIVPV ADMPYTADGE PVDIVLNPLG VPSRMNIGQI LEMHLGLVGK EFGKQIARML EDKTKDFAKE LRAKMLEIAN AINEKDPLTI HALENCSDEE LLEYAKDWSK GVKMAIPVFE GISQEKFYKL FELAKIAMDG KMDLYDGRTG EKMRERVNVG YMYMIKLHHL VDEKVHARST GPYSLVTHQP VGGKALFGGQ RFGEMEVWAL EAYGAAHTLK EMLTIKSDDI RGRENAYRAI AKGEQVGESE IPETFYVLTK ELQSLALDIN IFGDDVDEDG APKPIVIKED DRPKDFSSFQ LTLASPEKIH SWSYGEVKKP ETINYRTLKP ERDGLFCMKI FGPTKDYECL CGKYKKPRFK DIGTCEKCGV AITHSKVRRF RMGHIELATP VAHIWYVNSL PSRIGTLLGV KMKDLERVLY YEAYIVKEPG EAAYDNEGTK LVMKYDILNE EQYQNISRRY EDRGFVAQMG GEAIKDLLEE IDLITLLQSL KEEVKDTNSD AKKKKLIKRL KVVESFLNSG NRPEWMMLTV LPVLPPDLRP LVALDGGKFA VSDVNELYRR VINRNQRLKR LMELGAPEII VRNEKRMLQE AVDVLFDNGR STNAVKGANK RPLKSLSEII KGKQGRFRQN LLGKRVDFSG RSVIVVGPNL KMDECGLPKN MALELFKPHL LSKLEERGYA TTLKQAKRMI EQKSNEVWEC LQEITEGYPV LLNRAPTLHK QSIQAFHPKL IDGKAIQLHP LVCSAFNADF DGDQMAVHVP LSQEAIAECK VLMLSSMNIL LPASGKAVAI PSQDMVLGLY YLSLEKSGVK GEHKLFSSVN EIITAIDTKE LDIHAKIRVL DQGNIIATSA GRMIIKSILP DFIPTDLWNR PMKKKDIGVL VDYVHKVGGI GITATFLDNL KTLGFRYATK AGISISMEDI ITPKDKQKMV EKAKVEVKKI QQQYDQGLLT DQERYNKIID TWTEVNDKMS KEMMTAIAQD KEGFNSIYMM ADSGARGSAA QIRQLSAMRG LMTKPDGSII ETPIISNFKE GLNVLEYFNS THGARKGLAD TALKTANAGY LTRKLIDVSQ NVKVVSDDCG THEGIEITDI AVGSELIEPL EERIFGRVLL EDVIDPITNE ILLYADTLID EEGAKKVVEA GIKSITIRTP VTCKAPKGVC AKCYGLNLGE GKMSYPGEAV GVVAAQSIGE PGTQLTLRTF HVGGTASRSQ DEREIVASKE GFVRFYNLRT YTNKEGKNII ANRRNASILV VEPKIKAPFD GELRIETVYE EVVVSVKNGD QEAKFVLRRS DIVKPSELAG VGGKIEGKVY LPYASGHKVH KGGSIADIIQ EGWNVPNRIP YASELLVKDN DPIAQDVYAK EKGVIKYYVL EANHLERTHG IKKGDMVSEK GLFAVIADDN GREAARHYIA RGSEILIDDN SEVSTNSVIS KPTTNTFKTI ATWDPYNTPI IADFKGKVGF VDVIAGVTVA EKEDENTGIT SLVVNDYIPS GYKPSLFLEG ANGEEMRYFL EPKTSIAISD GSSVEQAEVL AKIPKATVKS RDITGGLPRV SELFEARKPK PKDVAILSEV DGIVSFGKPI RNKEHIIVTS KDGRSMDYFV DKGKQILVHA DEFVHAGEAM TDGVISSHDI LRISGEKELY KYIVSEVQQV YRRQGVSIAD KHIEIIVSQM LRQVRILDSG DSKFIEGDLV SKKLFKEENA RVIALKGEPA IAEPVLLGIT RAAIGSDSII SAASFQETTK VLTEASIAMK KDFLEDLKEN VVLGRMIPVG TGMYKNKKIV LRALEDNSKF // ID RS15_HELPY Reviewed; 90 AA. AC P56022; Q9X5H2; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 93. DE RecName: Full=30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; GN Name=rpsO {ECO:0000255|HAMAP-Rule:MF_01343}; GN OrderedLocusNames=HP_1040; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 43504; RX PubMed=10198012; RA McGee D.J., May C.A., Garner R.M., Himpsl J.M., Mobley H.L.T.; RT "Isolation of Helicobacter pylori genes that modulate urease RT activity."; RL J. Bacteriol. 181:2477-2484(1999). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA where it helps nucleate assembly of the CC platform of the 30S subunit by binding and bridging several RNA CC helices of the 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01343}. CC -!- FUNCTION: Forms an intersubunit bridge (bridge B4) with the 23S CC rRNA of the 50S subunit in the ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01343}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a bridge to the CC 50S subunit in the 70S ribosome, contacting the 23S rRNA. CC {ECO:0000255|HAMAP-Rule:MF_01343}. CC -!- SIMILARITY: Belongs to the ribosomal protein S15P family. CC {ECO:0000255|HAMAP-Rule:MF_01343}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08082.1; -; Genomic_DNA. DR EMBL; AF125197; AAD27688.1; -; Genomic_DNA. DR PIR; H64649; H64649. DR RefSeq; NP_207830.1; NC_000915.1. DR RefSeq; WP_001207122.1; NC_018939.1. DR ProteinModelPortal; P56022; -. DR IntAct; P56022; 2. DR STRING; 85962.HP1040; -. DR PaxDb; P56022; -. DR PRIDE; P56022; -. DR EnsemblBacteria; AAD08082; AAD08082; HP_1040. DR GeneID; 899575; -. DR KEGG; heo:C694_05380; -. DR KEGG; hpy:HP1040; -. DR PATRIC; 20593417; VBIHelPyl33062_1089. DR eggNOG; ENOG4105K77; Bacteria. DR eggNOG; COG0184; LUCA. DR KO; K02956; -. DR OMA; TEHFKSH; -. DR OrthoDB; EOG6B368J; -. DR BioCyc; HPY:HP1040-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.10; -; 1. DR HAMAP; MF_01343_B; Ribosomal_S15_B; 1. DR InterPro; IPR000589; Ribosomal_S15. DR InterPro; IPR005290; Ribosomal_S15_bac-type. DR InterPro; IPR009068; S15_NS1_RNA-bd. DR Pfam; PF00312; Ribosomal_S15; 1. DR SMART; SM01387; Ribosomal_S15; 1. DR SUPFAM; SSF47060; SSF47060; 1. DR TIGRFAMs; TIGR00952; S15_bact; 1. DR PROSITE; PS00362; RIBOSOMAL_S15; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 90 30S ribosomal protein S15. FT /FTId=PRO_0000115450. FT VARIANT 19 19 E -> Q (in strain: ATCC 43504). FT VARIANT 37 37 K -> R (in strain: ATCC 43504). FT VARIANT 74 74 N -> D (in strain: ATCC 43504). SQ SEQUENCE 90 AA; 10390 MW; 298BE06819002481 CRC64; MALNLEKKQE IIKAFATKEN DTGSCEVQVA LLNERIKLLT EHLKANPKDH SSRLGLLKLV AQRRNLLKYI KRTNHARYVV LIEKLGIKDR // ID RS18_HELPY Reviewed; 85 AA. AC P66459; P56025; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 61. DE RecName: Full=30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; GN Name=rpsR {ECO:0000255|HAMAP-Rule:MF_00270}; GN OrderedLocusNames=HP_1244; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds as a heterodimer with protein S6 to the central CC domain of the 16S rRNA, where it helps stabilize the platform of CC the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a tight CC heterodimer with protein S6. {ECO:0000255|HAMAP-Rule:MF_00270}. CC -!- INTERACTION: CC P56013:rpsF; NbExp=4; IntAct=EBI-7719400, EBI-7719651; CC -!- SIMILARITY: Belongs to the ribosomal protein S18P family. CC {ECO:0000255|HAMAP-Rule:MF_00270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08290.1; -; Genomic_DNA. DR PIR; D64675; D64675. DR RefSeq; NP_208036.1; NC_000915.1. DR RefSeq; WP_000440196.1; NC_018939.1. DR ProteinModelPortal; P66459; -. DR IntAct; P66459; 2. DR MINT; MINT-4077748; -. DR STRING; 85962.HP1244; -. DR PaxDb; P66459; -. DR PRIDE; P66459; -. DR EnsemblBacteria; AAD08290; AAD08290; HP_1244. DR GeneID; 900212; -. DR KEGG; heo:C694_06430; -. DR KEGG; hpy:HP1244; -. DR PATRIC; 20593865; VBIHelPyl33062_1303. DR eggNOG; ENOG4105VH8; Bacteria. DR eggNOG; COG0238; LUCA. DR KO; K02963; -. DR OMA; DNRKKYC; -. DR OrthoDB; EOG6PCQ4R; -. DR BioCyc; HPY:HP1244-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 4.10.640.10; -; 1. DR HAMAP; MF_00270; Ribosomal_S18; 1. DR InterPro; IPR001648; Ribosomal_S18. DR InterPro; IPR018275; Ribosomal_S18_CS. DR Pfam; PF01084; Ribosomal_S18; 1. DR PRINTS; PR00974; RIBOSOMALS18. DR ProDom; PD002239; Ribosomal_S18; 1. DR SUPFAM; SSF46911; SSF46911; 1. DR TIGRFAMs; TIGR00165; S18; 1. DR PROSITE; PS00057; RIBOSOMAL_S18; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 85 30S ribosomal protein S18. FT /FTId=PRO_0000111163. SQ SEQUENCE 85 AA; 10448 MW; 590B0EB3B21FBD28 CRC64; MERKRYSKRY CKYTEAKISF IDYKDLDMLK HTLSERYKIM PRRLTGNSKK WQERVEVAIK RARHMALIPY IVDRKKVVDS PFKQH // ID RS16_HELPY Reviewed; 76 AA. AC P56023; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; GN Name=rpsP {ECO:0000255|HAMAP-Rule:MF_00385}; GN OrderedLocusNames=HP_1151; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein S16P family. CC {ECO:0000255|HAMAP-Rule:MF_00385}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08199.1; -; Genomic_DNA. DR PIR; G64663; G64663. DR RefSeq; NP_207942.1; NC_000915.1. DR RefSeq; WP_000216125.1; NC_018939.1. DR ProteinModelPortal; P56023; -. DR IntAct; P56023; 4. DR STRING; 85962.HP1151; -. DR PaxDb; P56023; -. DR PRIDE; P56023; -. DR EnsemblBacteria; AAD08199; AAD08199; HP_1151. DR GeneID; 899911; -. DR KEGG; heo:C694_05945; -. DR KEGG; hpy:HP1151; -. DR PATRIC; 20593653; VBIHelPyl33062_1205. DR eggNOG; ENOG4105K5M; Bacteria. DR eggNOG; COG0228; LUCA. DR KO; K02959; -. DR OMA; TRMGRNK; -. DR OrthoDB; EOG6CVVKH; -. DR BioCyc; HPY:HP1151-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1320.10; -; 1. DR HAMAP; MF_00385; Ribosomal_S16; 1. DR InterPro; IPR000307; Ribosomal_S16. DR InterPro; IPR020592; Ribosomal_S16_CS. DR InterPro; IPR023803; Ribosomal_S16_dom. DR PANTHER; PTHR12919; PTHR12919; 1. DR Pfam; PF00886; Ribosomal_S16; 1. DR SUPFAM; SSF54565; SSF54565; 1. DR TIGRFAMs; TIGR00002; S16; 1. DR PROSITE; PS00732; RIBOSOMAL_S16; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 76 30S ribosomal protein S16. FT /FTId=PRO_0000167194. SQ SEQUENCE 76 AA; 8971 MW; FC0FB203D79ADFC8 CRC64; MTVIRLTRIG RKKKPFYRVV VTDSRKRRDG GWIESIGYYN PLSEPKDIKI DKERLNYWKG VGAKMSERVE KLSQKA // ID RS11_HELPY Reviewed; 131 AA. AC P56018; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; GN Name=rpsK {ECO:0000255|HAMAP-Rule:MF_01310}; GN OrderedLocusNames=HP_1295; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Located on the platform of the 30S subunit, it bridges CC several disparate RNA helices of the 16S rRNA. Forms part of the CC Shine-Dalgarno cleft in the 70S ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01310}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Interacts with CC proteins S7 and S18. Binds to IF-3. {ECO:0000255|HAMAP- CC Rule:MF_01310}. CC -!- SIMILARITY: Belongs to the ribosomal protein S11P family. CC {ECO:0000255|HAMAP-Rule:MF_01310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08338.1; -; Genomic_DNA. DR PIR; G64681; G64681. DR RefSeq; NP_208087.1; NC_000915.1. DR RefSeq; WP_001129287.1; NC_018939.1. DR ProteinModelPortal; P56018; -. DR SMR; P56018; 14-131. DR IntAct; P56018; 1. DR STRING; 85962.HP1295; -. DR PaxDb; P56018; -. DR PRIDE; P56018; -. DR EnsemblBacteria; AAD08338; AAD08338; HP_1295. DR GeneID; 898865; -. DR KEGG; heo:C694_06690; -. DR KEGG; hpy:HP1295; -. DR PATRIC; 20593971; VBIHelPyl33062_1356. DR eggNOG; ENOG4108UHH; Bacteria. DR eggNOG; COG0100; LUCA. DR KO; K02948; -. DR OMA; NTPYASQ; -. DR OrthoDB; EOG6ZSPF3; -. DR BioCyc; HPY:HP1295-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.80; -; 1. DR HAMAP; MF_01310; Ribosomal_S11; 1. DR InterPro; IPR001971; Ribosomal_S11. DR InterPro; IPR019981; Ribosomal_S11_bac-type. DR InterPro; IPR018102; Ribosomal_S11_CS. DR PANTHER; PTHR11759; PTHR11759; 1. DR Pfam; PF00411; Ribosomal_S11; 1. DR PIRSF; PIRSF002131; Ribosomal_S11; 1. DR TIGRFAMs; TIGR03632; uS11_bact; 1. DR PROSITE; PS00054; RIBOSOMAL_S11; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 131 30S ribosomal protein S11. FT /FTId=PRO_0000123157. SQ SEQUENCE 131 AA; 14029 MW; 707CC0033C04EE1F CRC64; MAKRNVTAKK KVVKKNIARG VVYISATFNN TNITITDEMG NVICWSTAGG LGFKGSKKST PYAAQQAVES ALSKAKEHGV KEVGIKVQGP GSGRETAIKS VGATEGIKVL WIKDITPLPH NGCRPPKRRR V // ID RS12_HELPY Reviewed; 135 AA. AC P0A0X4; P56019; Q9R787; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 11-NOV-2015, entry version 73. DE RecName: Full=30S ribosomal protein S12; GN Name=rpsL; OrderedLocusNames=HP_1197; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] (OF A STREPTOMYCIN RESISTANT RP VARIANT). RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RA Marchetti M., Censini S., Ghiara P., Rappuoli R., Covacci A.; RT "Mutations affecting the colonizing-potential of Helicobacter pylori RT map within the cag pathogenicity island."; RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases. RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=23093592; DOI=10.1093/nar/gks945; RA Redko Y., Aubert S., Stachowicz A., Lenormand P., Namane A., RA Darfeuille F., Thibonnier M., De Reuse H.; RT "A minimal bacterial RNase J-based degradosome is associated with RT translating ribosomes."; RL Nucleic Acids Res. 41:288-301(2013). CC -!- FUNCTION: With S4 and S5 plays an important role in translational CC accuracy. {ECO:0000250}. CC -!- FUNCTION: Interacts with and stabilizes bases of the 16S rRNA that CC are involved in tRNA selection in the A site and with the mRNA CC backbone. Located at the interface of the 30S and 50S subunits, it CC traverses the body of the 30S subunit contacting proteins on the CC other side and probably holding the rRNA structure together. The CC combined cluster of proteins S8, S12 and S17 appears to hold CC together the shoulder and platform of the 30S subunit (By CC similarity). {ECO:0000250}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S8 CC and S17. May interact with IF1 in the 30S initiation complex (By CC similarity). {ECO:0000250}. CC -!- INTERACTION: CC O25687:rimP; NbExp=3; IntAct=EBI-7607319, EBI-7605525; CC -!- SIMILARITY: Belongs to the ribosomal protein S12P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08241.1; -; Genomic_DNA. DR EMBL; U96106; AAD00825.1; -; Genomic_DNA. DR PIR; E64669; E64669. DR RefSeq; NP_207988.1; NC_000915.1. DR RefSeq; WP_001142321.1; NC_018939.1. DR ProteinModelPortal; P0A0X4; -. DR SMR; P0A0X4; 1-123. DR IntAct; P0A0X4; 3. DR MINT; MINT-160916; -. DR STRING; 85962.HP1197; -. DR PaxDb; P0A0X4; -. DR PRIDE; P0A0X4; -. DR EnsemblBacteria; AAD08241; AAD08241; HP_1197. DR GeneID; 899959; -. DR KEGG; heo:C694_06190; -. DR KEGG; hpy:HP1197; -. DR PATRIC; 20593751; VBIHelPyl33062_1253. DR eggNOG; ENOG4108UKE; Bacteria. DR eggNOG; COG0048; LUCA. DR KO; K02950; -. DR OMA; LKSCPER; -. DR OrthoDB; EOG61ZTNF; -. DR BioCyc; HPY:HP1197-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00403_B; Ribosomal_S12_B; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR006032; Ribosomal_S12/S23. DR InterPro; IPR005679; Ribosomal_S12_bac. DR PANTHER; PTHR11652; PTHR11652; 1. DR Pfam; PF00164; Ribosom_S12_S23; 1. DR PIRSF; PIRSF002133; Ribosomal_S12/S23; 1. DR PRINTS; PR01034; RIBOSOMALS12. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00981; rpsL_bact; 1. DR PROSITE; PS00055; RIBOSOMAL_S12; 1. PE 1: Evidence at protein level; KW Antibiotic resistance; Complete proteome; Methylation; KW Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding; KW rRNA-binding; tRNA-binding. FT CHAIN 1 135 30S ribosomal protein S12. FT /FTId=PRO_0000146235. FT MOD_RES 89 89 3-methylthioaspartic acid. {ECO:0000250}. FT VARIANT 43 43 K -> R (in strain: CCUG 17874; FT streptomycin resistant). SQ SEQUENCE 135 AA; 15106 MW; 909C91470EB19959 CRC64; MPTINQLIRK ERKKVVKKTK SPALVECPQR RGVCTRVYTT TPKKPNSALR KVAKVRLTSK FEVISYIPGE GHNLQEHSIV LVRGGRVKDL PGVKYHIVRG ALDTAGVNKR TVSRSKYGTK KAKATDKKAT DNKKK // ID RS14Z_HELPY Reviewed; 61 AA. AC P56021; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 83. DE RecName: Full=30S ribosomal protein S14 type Z {ECO:0000255|HAMAP-Rule:MF_01364}; GN Name=rpsZ {ECO:0000255|HAMAP-Rule:MF_01364}; GN Synonyms=rpsN {ECO:0000255|HAMAP-Rule:MF_01364}; GN OrderedLocusNames=HP_1306; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds 16S rRNA, required for the assembly of 30S CC particles and may also be responsible for determining the CC conformation of the 16S rRNA at the A site. {ECO:0000255|HAMAP- CC Rule:MF_01364}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01364}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01364}; CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S3 CC and S10. {ECO:0000255|HAMAP-Rule:MF_01364}. CC -!- SIMILARITY: Belongs to the ribosomal protein S14P family. Zinc- CC binding S14P subfamily. {ECO:0000255|HAMAP-Rule:MF_01364}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08361.1; -; Genomic_DNA. DR PIR; B64683; B64683. DR RefSeq; NP_208098.1; NC_000915.1. DR RefSeq; WP_001085694.1; NC_018939.1. DR ProteinModelPortal; P56021; -. DR SMR; P56021; 2-61. DR STRING; 85962.HP1306; -. DR PaxDb; P56021; -. DR PRIDE; P56021; -. DR EnsemblBacteria; AAD08361; AAD08361; HP_1306. DR GeneID; 898846; -. DR KEGG; heo:C694_06745; -. DR KEGG; hpy:HP1306; -. DR PATRIC; 20593993; VBIHelPyl33062_1367. DR eggNOG; ENOG41082QR; Bacteria. DR eggNOG; COG0199; LUCA. DR KO; K02954; -. DR OMA; RAYTRCN; -. DR OrthoDB; EOG6BCT0K; -. DR BioCyc; HPY:HP1306-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01364_B; Ribosomal_S14_2_B; 1. DR InterPro; IPR001209; Ribosomal_S14. DR InterPro; IPR018271; Ribosomal_S14_CS. DR InterPro; IPR023053; Ribosomal_S14_Z. DR PANTHER; PTHR19836; PTHR19836; 1. DR Pfam; PF00253; Ribosomal_S14; 1. DR PROSITE; PS00527; RIBOSOMAL_S14; 1. PE 3: Inferred from homology; KW Complete proteome; Metal-binding; Reference proteome; KW Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding; Zinc. FT CHAIN 1 61 30S ribosomal protein S14 type Z. FT /FTId=PRO_0000130894. FT METAL 24 24 Zinc. {ECO:0000255|HAMAP-Rule:MF_01364}. FT METAL 27 27 Zinc. {ECO:0000255|HAMAP-Rule:MF_01364}. FT METAL 40 40 Zinc. {ECO:0000255|HAMAP-Rule:MF_01364}. FT METAL 43 43 Zinc. {ECO:0000255|HAMAP-Rule:MF_01364}. SQ SEQUENCE 61 AA; 7043 MW; EB4D764FCF507AB6 CRC64; MAKKSMIAKA QRKPKFQVRA YTRCRICGRP HSVYRDFGLC RVCLRKMGSE GLIPGLRKAS W // ID RS17_HELPY Reviewed; 86 AA. AC P66449; P56024; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 61. DE RecName: Full=30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; GN Name=rpsQ {ECO:0000255|HAMAP-Rule:MF_01345}; GN OrderedLocusNames=HP_1310; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC specifically to the 5'-end of 16S ribosomal RNA. CC {ECO:0000255|HAMAP-Rule:MF_01345}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01345}. CC -!- SIMILARITY: Belongs to the ribosomal protein S17P family. CC {ECO:0000255|HAMAP-Rule:MF_01345}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08350.1; -; Genomic_DNA. DR PIR; F64683; F64683. DR RefSeq; NP_208102.1; NC_000915.1. DR RefSeq; WP_001092746.1; NC_018939.1. DR ProteinModelPortal; P66449; -. DR STRING; 85962.HP1310; -. DR PaxDb; P66449; -. DR PRIDE; P66449; -. DR EnsemblBacteria; AAD08350; AAD08350; HP_1310. DR GeneID; 898862; -. DR KEGG; heo:C694_06765; -. DR KEGG; hpy:HP1310; -. DR PATRIC; 20594001; VBIHelPyl33062_1371. DR eggNOG; ENOG4105K87; Bacteria. DR eggNOG; COG0186; LUCA. DR KO; K02961; -. DR OMA; WIVVKDS; -. DR OrthoDB; EOG63JRH2; -. DR BioCyc; HPY:HP1310-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_01345_B; Ribosomal_S17_B; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000266; Ribosomal_S17/S11. DR InterPro; IPR019984; Ribosomal_S17_bac-type. DR InterPro; IPR019979; Ribosomal_S17_CS. DR PANTHER; PTHR10744; PTHR10744; 1. DR Pfam; PF00366; Ribosomal_S17; 1. DR PRINTS; PR00973; RIBOSOMALS17. DR ProDom; PD001295; Ribosomal_S17; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR03635; uS17_bact; 1. DR PROSITE; PS00056; RIBOSOMAL_S17; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 86 30S ribosomal protein S17. FT /FTId=PRO_0000128461. SQ SEQUENCE 86 AA; 9939 MW; 6F0BA040DDD1F2DA CRC64; MNTKEPHKRL VQGKVISKFA EKSAVILVER KVVHEKYRKI VKKFKKYTIH DENNQVKVGD FVSAIECRPL SKTKSFTLKE ILVVGV // ID RS13_HELPY Reviewed; 120 AA. AC P56020; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; GN Name=rpsM {ECO:0000255|HAMAP-Rule:MF_01315}; GN OrderedLocusNames=HP_1296; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Located at the top of the head of the 30S subunit, it CC contacts several helices of the 16S rRNA. In the 70S ribosome it CC contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S CC subunit (bridge B1b), connecting the 2 subunits; these bridges are CC implicated in subunit movement. Contacts the tRNAs in the A and P- CC sites. {ECO:0000255|HAMAP-Rule:MF_01315}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose CC heterodimer with protein S19. Forms two bridges to the 50S subunit CC in the 70S ribosome. {ECO:0000255|HAMAP-Rule:MF_01315}. CC -!- SIMILARITY: Belongs to the ribosomal protein S13P family. CC {ECO:0000255|HAMAP-Rule:MF_01315}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08339.1; -; Genomic_DNA. DR PIR; H64681; H64681. DR RefSeq; NP_208088.1; NC_000915.1. DR RefSeq; WP_000090809.1; NC_018939.1. DR ProteinModelPortal; P56020; -. DR SMR; P56020; 2-120. DR STRING; 85962.HP1296; -. DR PaxDb; P56020; -. DR PRIDE; P56020; -. DR EnsemblBacteria; AAD08339; AAD08339; HP_1296. DR GeneID; 900282; -. DR KEGG; heo:C694_06695; -. DR KEGG; hpy:HP1296; -. DR PATRIC; 20593973; VBIHelPyl33062_1357. DR eggNOG; ENOG4108Z04; Bacteria. DR eggNOG; COG0099; LUCA. DR KO; K02952; -. DR OMA; RTKNNSR; -. DR OrthoDB; EOG618R01; -. DR BioCyc; HPY:HP1296-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 4.10.910.10; -; 1. DR HAMAP; MF_01315; Ribosomal_S13_S18; 1. DR InterPro; IPR027437; 30s_Rbsml_prot_S13_C. DR InterPro; IPR001892; Ribosomal_S13. DR InterPro; IPR010979; Ribosomal_S13-like_H2TH. DR InterPro; IPR019980; Ribosomal_S13_bac-type. DR InterPro; IPR018269; Ribosomal_S13_CS. DR Pfam; PF00416; Ribosomal_S13; 1. DR PIRSF; PIRSF002134; Ribosomal_S13; 1. DR SUPFAM; SSF46946; SSF46946; 1. DR TIGRFAMs; TIGR03631; uS13_bact; 1. DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1. DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA-binding. FT CHAIN 1 120 30S ribosomal protein S13. FT /FTId=PRO_0000132096. SQ SEQUENCE 120 AA; 13575 MW; DBD77A7416A72795 CRC64; MARIAGVDLP KKKRVEYALT YIYGIGLKSS REILEAVGIS FDKRVHELSE DEVSSIAKKI QQSYLVEGDL RKKVQMDIKS LMDLGNYRGI RHRKGLPVRG QTTKNNARTR KGKKKTVGSK // ID RS21_HELPY Reviewed; 70 AA. AC P56028; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 80. DE RecName: Full=30S ribosomal protein S21; GN Name=rpsU; OrderedLocusNames=HP_0562; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein S21P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07628.1; -; Genomic_DNA. DR PIR; B64590; B64590. DR RefSeq; NP_207357.1; NC_000915.1. DR RefSeq; WP_001117778.1; NC_018939.1. DR ProteinModelPortal; P56028; -. DR IntAct; P56028; 1. DR STRING; 85962.HP0562; -. DR PaxDb; P56028; -. DR PRIDE; P56028; -. DR EnsemblBacteria; AAD07628; AAD07628; HP_0562. DR GeneID; 899028; -. DR KEGG; heo:C694_02900; -. DR KEGG; hpy:HP0562; -. DR PATRIC; 20592397; VBIHelPyl33062_0587. DR eggNOG; ENOG41082DJ; Bacteria. DR eggNOG; COG0828; LUCA. DR KO; K02970; -. DR OMA; CDRNLIV; -. DR OrthoDB; EOG6FBX3Z; -. DR BioCyc; HPY:HP0562-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00358; Ribosomal_S21; 1. DR InterPro; IPR001911; Ribosomal_S21. DR InterPro; IPR018278; Ribosomal_S21_CS. DR Pfam; PF01165; Ribosomal_S21; 1. DR PRINTS; PR00976; RIBOSOMALS21. DR ProDom; PD005521; Ribosomal_S21; 1. DR TIGRFAMs; TIGR00030; S21p; 1. DR PROSITE; PS01181; RIBOSOMAL_S21; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 70 30S ribosomal protein S21. FT /FTId=PRO_0000178341. SQ SEQUENCE 70 AA; 8613 MW; 417A8696B1A03B76 CRC64; MPGIKVREGD AFDEAYRRFK KQTDRNLVVT ECRARRFFES KTEKRKKQKI SAKKKVLKRL YMLRRYESRL // ID RS2_HELPY Reviewed; 264 AA. AC P56009; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=30S ribosomal protein S2; GN Name=rpsB; OrderedLocusNames=HP_1554; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein S2P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08594.1; -; Genomic_DNA. DR PIR; B64714; B64714. DR RefSeq; NP_208345.1; NC_000915.1. DR RefSeq; WP_000258283.1; NC_018939.1. DR ProteinModelPortal; P56009; -. DR SMR; P56009; 4-229. DR IntAct; P56009; 2. DR STRING; 85962.HP1554; -. DR PaxDb; P56009; -. DR PRIDE; P56009; -. DR EnsemblBacteria; AAD08594; AAD08594; HP_1554. DR GeneID; 899737; -. DR KEGG; heo:C694_08050; -. DR KEGG; hpy:HP1554; -. DR PATRIC; 20594531; VBIHelPyl33062_1633. DR eggNOG; ENOG4105CE9; Bacteria. DR eggNOG; COG0052; LUCA. DR KO; K02967; -. DR OMA; EALMFER; -. DR OrthoDB; EOG6XWV6P; -. DR BioCyc; HPY:HP1554-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00291_B; Ribosomal_S2_B; 1. DR InterPro; IPR001865; Ribosomal_S2. DR InterPro; IPR005706; Ribosomal_S2_bac/mit/plastid. DR InterPro; IPR018130; Ribosomal_S2_CS. DR InterPro; IPR023591; Ribosomal_S2_flav_dom. DR PANTHER; PTHR12534; PTHR12534; 1. DR Pfam; PF00318; Ribosomal_S2; 1. DR PRINTS; PR00395; RIBOSOMALS2. DR SUPFAM; SSF52313; SSF52313; 1. DR TIGRFAMs; TIGR01011; rpsB_bact; 1. DR PROSITE; PS00962; RIBOSOMAL_S2_1; 1. DR PROSITE; PS00963; RIBOSOMAL_S2_2; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 264 30S ribosomal protein S2. FT /FTId=PRO_0000134178. SQ SEQUENCE 264 AA; 30688 MW; 340E50323BFB36BC CRC64; MVTMKDLLEC GVHFGHQTRR WNPKTKKFIF GVRKNIHIID LQKTLRYFRY TYNIVRDASA QGKSIMFVGT KKQANETLKE FAESIQVPYV NYRWLGGMLT NFSTIRKSVR KLEIIEEMEN SGQIDLLTKK EKLMILRKKE KLDKYLGGVR HMKKIPDMIF VIDVAKEKIA VAEARKLHIP IVAPLDTNCD PDLVDYPIPG NDDAIRSIRL FCKEMSEAIL EGRELMQEEI VHANENSEEI EYVSHEEKEE MLAEIQKEIT QGAE // ID RSMH_HELPY Reviewed; 308 AA. AC O25411; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; DE EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007}; DE AltName: Full=16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01007}; DE AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000255|HAMAP-Rule:MF_01007}; GN Name=rsmH {ECO:0000255|HAMAP-Rule:MF_01007}; Synonyms=mraW; GN OrderedLocusNames=HP_0707; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically methylates the N4 position of cytidine in CC position 1402 (C1402) of 16S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_01007}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + cytosine(1402) in CC 16S rRNA = S-adenosyl-L-homocysteine + N(4)-methylcytosine(1402) CC in 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01007}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01007}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. RsmH CC family. {ECO:0000255|HAMAP-Rule:MF_01007}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07761.1; -; Genomic_DNA. DR PIR; C64608; C64608. DR RefSeq; NP_207501.1; NC_000915.1. DR RefSeq; WP_001155571.1; NC_018939.1. DR ProteinModelPortal; O25411; -. DR DIP; DIP-3175N; -. DR IntAct; O25411; 1. DR MINT; MINT-186621; -. DR STRING; 85962.HP0707; -. DR PaxDb; O25411; -. DR PRIDE; O25411; -. DR EnsemblBacteria; AAD07761; AAD07761; HP_0707. DR GeneID; 900239; -. DR KEGG; heo:C694_03640; -. DR KEGG; hpy:HP0707; -. DR PATRIC; 20592701; VBIHelPyl33062_0739. DR eggNOG; ENOG4105CGJ; Bacteria. DR eggNOG; COG0275; LUCA. DR KO; K03438; -. DR OMA; NKKIHPA; -. DR OrthoDB; EOG6X9MQ1; -. DR BioCyc; HPY:HP0707-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0071424; F:rRNA (cytosine-N4-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070475; P:rRNA base methylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.150.170; -; 1. DR Gene3D; 3.40.50.150; -; 2. DR HAMAP; MF_01007; 16SrRNA_methyltr_H; 1. DR InterPro; IPR002903; RsmH. DR InterPro; IPR023397; SAM-dep_MeTrfase_MraW_recog. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR11265; PTHR11265; 1. DR Pfam; PF01795; Methyltransf_5; 1. DR PIRSF; PIRSF004486; MraW; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR SUPFAM; SSF81799; SSF81799; 1. DR TIGRFAMs; TIGR00006; TIGR00006; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 308 Ribosomal RNA small subunit FT methyltransferase H. FT /FTId=PRO_0000108638. FT REGION 36 38 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01007}. FT BINDING 55 55 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01007}. FT BINDING 82 82 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_01007}. FT BINDING 103 103 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01007}. FT BINDING 110 110 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01007}. SQ SEQUENCE 308 AA; 34977 MW; 9C435C791E719FBB CRC64; MQEIESLHQS VLLQEVLQAF MPLEEGVLID CTLGLGGHSK ALLSQKPHLK LIGIDKDKFA QEIAKERLKA FEGRYNLLSG GFAKRFKEAL ETHNKEIKGV LVDLGVSSLQ LDDDNRGFNF HSHTLDMRMD LESELNAQKV INSYPIVALE KIFRDYGEIK EYKKIAHKIA ERRAKKPFKN AKDLSEFLSS FSKNKKIHPA TLVFQAVRIE VNSELEELKE FLQCARNLKG AILCVISFHS LEDALVKNAF KDYAKNCICD PSSFKCACSN NHALGEILTK KPITPSPEEI KNNRRSRSAK MRVFQFKP // ID RS19_HELPY Reviewed; 93 AA. AC P56026; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=30S ribosomal protein S19; GN Name=rpsS; OrderedLocusNames=HP_1315; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Protein S19 forms a complex with S13 that binds strongly CC to the 16S ribosomal RNA. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribosomal protein S19P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08354.1; -; Genomic_DNA. DR PIR; C64684; C64684. DR RefSeq; NP_208107.1; NC_000915.1. DR RefSeq; WP_000091384.1; NC_018939.1. DR ProteinModelPortal; P56026; -. DR SMR; P56026; 3-83. DR STRING; 85962.HP1315; -. DR PaxDb; P56026; -. DR PRIDE; P56026; -. DR EnsemblBacteria; AAD08354; AAD08354; HP_1315. DR GeneID; 900270; -. DR KEGG; heo:C694_06790; -. DR KEGG; hpy:HP1315; -. DR PATRIC; 20594011; VBIHelPyl33062_1376. DR eggNOG; ENOG4105K7S; Bacteria. DR eggNOG; COG0185; LUCA. DR KO; K02965; -. DR OMA; VHNGRQF; -. DR OrthoDB; EOG61S365; -. DR BioCyc; HPY:HP1315-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.860.10; -; 1. DR HAMAP; MF_00531; Ribosomal_S19; 1. DR InterPro; IPR002222; Ribosomal_S19. DR InterPro; IPR005732; Ribosomal_S19_bac-type. DR InterPro; IPR020934; Ribosomal_S19_CS. DR InterPro; IPR023575; Ribosomal_S19_SF. DR PANTHER; PTHR11880; PTHR11880; 1. DR Pfam; PF00203; Ribosomal_S19; 1. DR PIRSF; PIRSF002144; Ribosomal_S19; 1. DR PRINTS; PR00975; RIBOSOMALS19. DR SUPFAM; SSF54570; SSF54570; 1. DR TIGRFAMs; TIGR01050; rpsS_bact; 1. DR PROSITE; PS00323; RIBOSOMAL_S19; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 93 30S ribosomal protein S19. FT /FTId=PRO_0000129833. SQ SEQUENCE 93 AA; 10688 MW; E8D7CA7F34914E54 CRC64; MSRSIKKGPF IDDHLMKKTL KAKEGKDNRP IKTWSRRSTI LPEMIGFTYN VHNGRVFIPV YITENHVGYK LGEFAPTRTF KGHKGSVQKK IGK // ID RS3_HELPY Reviewed; 234 AA. AC P56010; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; GN Name=rpsC {ECO:0000255|HAMAP-Rule:MF_01309}; GN OrderedLocusNames=HP_1313; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds the lower part of the 30S subunit head. Binds mRNA CC in the 70S ribosome, positioning it for translation. CC {ECO:0000255|HAMAP-Rule:MF_01309}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a tight complex CC with proteins S10 and S14. {ECO:0000255|HAMAP-Rule:MF_01309}. CC -!- SIMILARITY: Belongs to the ribosomal protein S3P family. CC {ECO:0000255|HAMAP-Rule:MF_01309}. CC -!- SIMILARITY: Contains 1 KH type-2 domain. {ECO:0000255|HAMAP- CC Rule:MF_01309}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08352.1; -; Genomic_DNA. DR PIR; A64684; A64684. DR RefSeq; NP_208105.1; NC_000915.1. DR RefSeq; WP_000529962.1; NC_018939.1. DR ProteinModelPortal; P56010; -. DR SMR; P56010; 2-207. DR DIP; DIP-3279N; -. DR IntAct; P56010; 1. DR MINT; MINT-187095; -. DR STRING; 85962.HP1313; -. DR PaxDb; P56010; -. DR PRIDE; P56010; -. DR EnsemblBacteria; AAD08352; AAD08352; HP_1313. DR GeneID; 898742; -. DR KEGG; heo:C694_06780; -. DR KEGG; hpy:HP1313; -. DR PATRIC; 20594007; VBIHelPyl33062_1374. DR eggNOG; ENOG4105CKE; Bacteria. DR eggNOG; COG0092; LUCA. DR KO; K02982; -. DR OMA; KTNPIGN; -. DR OrthoDB; EOG6K13X3; -. DR BioCyc; HPY:HP1313-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0003729; F:mRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1140.32; -; 1. DR Gene3D; 3.30.300.20; -; 1. DR HAMAP; MF_01309_B; Ribosomal_S3_B; 1. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR004044; KH_dom_type_2. DR InterPro; IPR009019; KH_prok-type. DR InterPro; IPR005704; Ribosomal_S3_bac. DR InterPro; IPR001351; Ribosomal_S3_C. DR InterPro; IPR018280; Ribosomal_S3_CS. DR Pfam; PF07650; KH_2; 1. DR SMART; SM00322; KH; 1. DR SUPFAM; SSF54814; SSF54814; 1. DR SUPFAM; SSF54821; SSF54821; 1. DR TIGRFAMs; TIGR01009; rpsC_bact; 1. DR PROSITE; PS50823; KH_TYPE_2; 1. DR PROSITE; PS00548; RIBOSOMAL_S3; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 234 30S ribosomal protein S3. FT /FTId=PRO_0000130130. FT DOMAIN 39 107 KH type-2. {ECO:0000255|HAMAP- FT Rule:MF_01309}. SQ SEQUENCE 234 AA; 26380 MW; B6EBAB2EB55273EF CRC64; MGQKVNPVGL RLGINRNWTS RWFPSARTAP SNIDEDNKIR KFLKKELYYA GVSEIVIERA AKKLRVTVVA ARPGLIIGKK GVDIEKVKDG LKTLIKKEVS INIKEVKHPQ ADAQLAAENV ATQLEKRVAF RRAMKKVMQA ALKSGAKGIK VCVSGRLAGA EIARTEWYME GRVPLHTLRA KIDYGFAEAM TVYGIIGVKV WIFKGEVLQK GIQFEKKEEA KEEREPRRSR RGRQ // ID RSME_HELPY Reviewed; 226 AA. AC O25138; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 86. DE RecName: Full=Ribosomal RNA small subunit methyltransferase E; DE EC=2.1.1.193; DE AltName: Full=16S rRNA m3U1498 methyltransferase; GN Name=rsmE; OrderedLocusNames=HP_0374; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically methylates the N3 position of the uracil CC ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully CC assembled 30S ribosomal subunit (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + uracil(1498) in 16S CC rRNA = S-adenosyl-L-homocysteine + N(3)-methyluracil(1498) in 16S CC rRNA. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the RNA methyltransferase RsmE family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07443.1; -; Genomic_DNA. DR PIR; F64566; F64566. DR RefSeq; NP_207172.1; NC_000915.1. DR RefSeq; WP_001213204.1; NC_018939.1. DR ProteinModelPortal; O25138; -. DR STRING; 85962.HP0374; -. DR PaxDb; O25138; -. DR PRIDE; O25138; -. DR EnsemblBacteria; AAD07443; AAD07443; HP_0374. DR GeneID; 899221; -. DR KEGG; heo:C694_01900; -. DR KEGG; hpy:HP0374; -. DR PATRIC; 20591985; VBIHelPyl33062_0386. DR eggNOG; ENOG4107YV6; Bacteria. DR eggNOG; COG1385; LUCA. DR KO; K09761; -. DR OMA; YHPLAKE; -. DR OrthoDB; EOG6FFS4S; -. DR BioCyc; HPY:HP0374-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. DR Gene3D; 3.40.1280.10; -; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR006700; rRNA_ssu_MeTrfase-E. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR Pfam; PF04452; Methyltrans_RNA; 1. DR PIRSF; PIRSF015601; MTase_slr0722; 1. DR SUPFAM; SSF75217; SSF75217; 1. DR TIGRFAMs; TIGR00046; TIGR00046; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 226 Ribosomal RNA small subunit FT methyltransferase E. FT /FTId=PRO_0000176210. SQ SEQUENCE 226 AA; 25771 MW; D6FACA4C3864358A CRC64; MRFVYHPLAK EPVLKIEGES YTHLYRSRRV KSASRLDLRN LKDGFLYTYE HAEITKKHAL LKLVGARLLE VMASKKTHLI LSVIEIKNIE KILPFLNQLG VSKLSLFYAD FSQRNEKIDI AKLERFQKIL IHSCEQCGRS ALMELEVFSN TKEALKAYPK ASVLDFKGET LPASADFEKG VIIGPEGGFS EPERGYFKER EIYRIPLDMV LKSESACVFV ASIAQV // ID RSMG_HELPY Reviewed; 178 AA. AC O25703; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; DE EC=2.1.1.170 {ECO:0000255|HAMAP-Rule:MF_00074}; DE AltName: Full=16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; DE Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; GN Name=rsmG {ECO:0000255|HAMAP-Rule:MF_00074}; GN OrderedLocusNames=HP_1063; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically methylates the N7 position of guanine in CC position 527 of 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00074}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + guanine(527) in 16S CC rRNA = S-adenosyl-L-homocysteine + N(7)-methylguanine(527) in 16S CC rRNA. {ECO:0000255|HAMAP-Rule:MF_00074}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00074}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. RNA CC methyltransferase RsmG family. {ECO:0000255|HAMAP-Rule:MF_00074}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08103.1; -; Genomic_DNA. DR PIR; G64652; G64652. DR RefSeq; NP_207854.1; NC_000915.1. DR RefSeq; WP_001068828.1; NC_018939.1. DR ProteinModelPortal; O25703; -. DR DIP; DIP-3515N; -. DR IntAct; O25703; 3. DR MINT; MINT-178328; -. DR STRING; 85962.HP1063; -. DR PaxDb; O25703; -. DR PRIDE; O25703; -. DR EnsemblBacteria; AAD08103; AAD08103; HP_1063. DR GeneID; 899598; -. DR KEGG; heo:C694_05495; -. DR KEGG; hpy:HP1063; -. DR PATRIC; 20593463; VBIHelPyl33062_1112. DR eggNOG; ENOG4105D28; Bacteria. DR eggNOG; COG0357; LUCA. DR KO; K03501; -. DR OMA; FMHQKRV; -. DR OrthoDB; EOG6HF639; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0070043; F:rRNA (guanine-N7-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00074; 16SrRNA_methyltr_G; 1. DR InterPro; IPR003682; rRNA_ssu_MeTfrase_G. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02527; GidB; 1. DR PIRSF; PIRSF003078; GidB; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00138; rsmG_gidB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 178 Ribosomal RNA small subunit FT methyltransferase G. FT /FTId=PRO_0000184263. FT REGION 105 106 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_00074}. FT BINDING 54 54 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00074}. FT BINDING 59 59 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00074}. FT BINDING 120 120 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_00074}. SQ SEQUENCE 178 AA; 20577 MW; 6D9BAF064A5786C0 CRC64; MNPLLQDYAR ILLEWNQTHN LSGAKNLSEL EPQITDALKP LEFIKDFKSC LDIGSGAGLP AIPLALEKPE VKFILLEPRI KRAAFLNYLK SVLPLKNIEI IKKRLEDYQN LLQVDLITSR AVASSSFLIE KSQRFLKDKG YFLFYKGEQL KDEIACKDTE CFMHQKRVYF YKSKESLC // ID RS1_HELPY Reviewed; 556 AA. AC P56008; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=30S ribosomal protein S1; GN Name=rpsA; OrderedLocusNames=HP_0399; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds mRNA; thus facilitating recognition of the CC initiation point. It is needed to translate mRNA with a short CC Shine-Dalgarno (SD) purine-rich sequence (By similarity). CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the ribosomal protein S1P family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 6 S1 motif domains. {ECO:0000255|PROSITE- CC ProRule:PRU00180}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07462.1; -; Genomic_DNA. DR PIR; G64569; G64569. DR RefSeq; NP_207197.1; NC_000915.1. DR RefSeq; WP_000034006.1; NC_018939.1. DR ProteinModelPortal; P56008; -. DR DIP; DIP-3207N; -. DR IntAct; P56008; 9. DR MINT; MINT-163972; -. DR STRING; 85962.HP0399; -. DR PaxDb; P56008; -. DR PRIDE; P56008; -. DR DNASU; 900079; -. DR EnsemblBacteria; AAD07462; AAD07462; HP_0399. DR GeneID; 900079; -. DR KEGG; heo:C694_02025; -. DR KEGG; hpy:HP0399; -. DR PATRIC; 20592037; VBIHelPyl33062_0412. DR eggNOG; ENOG4105CAV; Bacteria. DR eggNOG; COG0539; LUCA. DR KO; K02945; -. DR OMA; ISWDKNV; -. DR OrthoDB; EOG6WT8CC; -. DR BioCyc; HPY:HP0399-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 6. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000110; Ribosomal_S1. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR Pfam; PF00575; S1; 5. DR PRINTS; PR00681; RIBOSOMALS1. DR SMART; SM00316; S1; 6. DR SUPFAM; SSF50249; SSF50249; 6. DR TIGRFAMs; TIGR00717; rpsA; 1. DR PROSITE; PS50126; S1; 5. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Repeat; Ribonucleoprotein; KW Ribosomal protein; RNA-binding. FT CHAIN 1 556 30S ribosomal protein S1. FT /FTId=PRO_0000196038. FT DOMAIN 35 105 S1 motif 1. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. FT DOMAIN 120 183 S1 motif 2. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. FT DOMAIN 204 272 S1 motif 3. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. FT DOMAIN 289 359 S1 motif 4. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. FT DOMAIN 377 444 S1 motif 5. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. FT DOMAIN 461 525 S1 motif 6. {ECO:0000255|PROSITE- FT ProRule:PRU00180}. SQ SEQUENCE 556 AA; 62827 MW; 927389294BDEB85E CRC64; MSKIADDQNF NDEEENFAKL FKKELEKEET LEKGTIKEGL VVSINENDGY AMVSVGGKTE GRLALNEITD EKGQLLYQKN DPIIVHVSEK GEHPSVSYKK AISQQKIQAK IEELGENYEN AIIEGKIVGK NKGGYIVESQ GVEYFLSRSH SSLKNDANHI GKRVKACIIR VDKENHSINI SRKRFFEVND KRQLEVSKEL LEATEPVLGV VRQITPFGIF VEAKGIEGLV HYSEISHKGP VNPEKYYKEG DEVYVKAIAY DAEKRRLSLS IKATIEDPWE EIQDKLKPGY AIKVVVSNIE HYGVFVDIGN DIEGFLHVSE ISWDKNVSHP NNYLSVGQEI DVKIIDIDPK NRRLRVSLKQ LTNRPFDVFE SKHQVGDVLE GKVATLTDFG AFLNLGGVDG LLHNHDAFWD KDKKCKDHYK IGDVIKVKIL KINKKDKKIS LSAKHLVTSP TEEFAQKHKT DSVIQGKVVS IKDFGVFINA DGIDVLIKNE DLNPLKKDEI KIGQEITCVV VAIEKSNNKV RASVHRLERK KEKEELQAFN TSDDKMTLGD ILKEKL // ID RS20_HELPY Reviewed; 89 AA. AC P56027; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 77. DE RecName: Full=30S ribosomal protein S20 {ECO:0000255|HAMAP-Rule:MF_00500}; GN Name=rpsT {ECO:0000255|HAMAP-Rule:MF_00500}; GN OrderedLocusNames=HP_0076; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP- CC Rule:MF_00500}. CC -!- SIMILARITY: Belongs to the ribosomal protein S20P family. CC {ECO:0000255|HAMAP-Rule:MF_00500}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07147.1; -; Genomic_DNA. DR PIR; D64529; D64529. DR RefSeq; NP_206876.1; NC_000915.1. DR RefSeq; WP_001273615.1; NC_018939.1. DR ProteinModelPortal; P56027; -. DR STRING; 85962.HP0076; -. DR PaxDb; P56027; -. DR PRIDE; P56027; -. DR EnsemblBacteria; AAD07147; AAD07147; HP_0076. DR GeneID; 898977; -. DR KEGG; heo:C694_00370; -. DR KEGG; hpy:HP0076; -. DR PATRIC; 20591357; VBIHelPyl33062_0079. DR eggNOG; ENOG4108317; Bacteria. DR eggNOG; COG0268; LUCA. DR KO; K02968; -. DR OMA; FEPEIMR; -. DR OrthoDB; EOG6HMXNQ; -. DR BioCyc; HPY:HP0076-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.20.58.110; -; 1. DR HAMAP; MF_00500; Ribosomal_S20; 1. DR InterPro; IPR002583; Ribosomal_S20. DR Pfam; PF01649; Ribosomal_S20p; 1. DR ProDom; PD004231; Ribosomal_S20; 1. DR SUPFAM; SSF46992; SSF46992; 1. DR TIGRFAMs; TIGR00029; S20; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 89 30S ribosomal protein S20. FT /FTId=PRO_0000167971. SQ SEQUENCE 89 AA; 10196 MW; FD2DA520B39FEA36 CRC64; MANHKSAEKR IRQTIKRTER NRFYKTKIKN IIKAVREAVA VNDVAKAQER LKIANKELHK FVSKGILKKN TASRKVSRLN ASVKKIALA // ID RS4_HELPY Reviewed; 208 AA. AC P56011; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 91. DE RecName: Full=30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; GN Name=rpsD {ECO:0000255|HAMAP-Rule:MF_01306}; GN OrderedLocusNames=HP_1294; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA where it nucleates assembly of the body of CC the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- FUNCTION: With S5 and S12 plays an important role in translational CC accuracy. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S5. CC The interaction surface between S4 and S5 is involved in control CC of translational fidelity. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SIMILARITY: Belongs to the ribosomal protein S4P family. CC {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. {ECO:0000255|HAMAP- CC Rule:MF_01306}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08337.1; -; Genomic_DNA. DR PIR; F64681; F64681. DR RefSeq; NP_208086.1; NC_000915.1. DR RefSeq; WP_000135250.1; NC_018939.1. DR ProteinModelPortal; P56011; -. DR SMR; P56011; 49-208. DR DIP; DIP-3324N; -. DR IntAct; P56011; 6. DR MINT; MINT-164265; -. DR STRING; 85962.HP1294; -. DR PaxDb; P56011; -. DR PRIDE; P56011; -. DR EnsemblBacteria; AAD08337; AAD08337; HP_1294. DR GeneID; 899908; -. DR KEGG; heo:C694_06685; -. DR KEGG; hpy:HP1294; -. DR PATRIC; 20593969; VBIHelPyl33062_1355. DR eggNOG; ENOG4105G6W; Bacteria. DR eggNOG; COG0522; LUCA. DR KO; K02986; -. DR OMA; VYEWITW; -. DR OrthoDB; EOG6N3CXM; -. DR BioCyc; HPY:HP1294-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1050.10; -; 1. DR Gene3D; 3.10.290.10; -; 1. DR HAMAP; MF_01306_B; Ribosomal_S4_B; 1. DR InterPro; IPR022801; Ribosomal_S4/S9. DR InterPro; IPR001912; Ribosomal_S4/S9_N. DR InterPro; IPR005709; Ribosomal_S4_bac-type. DR InterPro; IPR018079; Ribosomal_S4_CS. DR InterPro; IPR002942; S4_RNA-bd. DR PANTHER; PTHR11831; PTHR11831; 1. DR Pfam; PF00163; Ribosomal_S4; 1. DR Pfam; PF01479; S4; 1. DR SMART; SM01390; Ribosomal_S4; 1. DR SMART; SM00363; S4; 1. DR TIGRFAMs; TIGR01017; rpsD_bact; 1. DR PROSITE; PS00632; RIBOSOMAL_S4; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 208 30S ribosomal protein S4. FT /FTId=PRO_0000132393. FT DOMAIN 98 160 S4 RNA-binding. {ECO:0000255|HAMAP- FT Rule:MF_01306}. SQ SEQUENCE 208 AA; 23965 MW; 58609696CAEACAE3 CRC64; MARYRGAVER LERRFGVSLA LKGERRLSGK SALDKRAYGP GQHGQRRAKT SDYGLQLKEK QKAKMMYGIS EKQFRSIFVE ANRLDGNTGE NLIRLIERRL DNVVYRMGFA TTRSSARQLV THGHVLVDGK RLDIPSYFVR SGQKIEIKEK TKSNSQVVRA MELTAQTGIV PWIDVEKDKK YGIFTRYPER EEVVVPIEER LIVELYSK // ID RSMA_HELPY Reviewed; 271 AA. AC O25972; DT 13-DEC-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Ribosomal RNA small subunit methyltransferase A {ECO:0000255|HAMAP-Rule:MF_00607}; DE EC=2.1.1.182 {ECO:0000255|HAMAP-Rule:MF_00607}; DE AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000255|HAMAP-Rule:MF_00607}; DE AltName: Full=16S rRNA dimethyladenosine transferase {ECO:0000255|HAMAP-Rule:MF_00607}; DE AltName: Full=16S rRNA dimethylase {ECO:0000255|HAMAP-Rule:MF_00607}; DE AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000255|HAMAP-Rule:MF_00607}; GN Name=rsmA {ECO:0000255|HAMAP-Rule:MF_00607}; GN Synonyms=ksgA {ECO:0000255|HAMAP-Rule:MF_00607}; GN OrderedLocusNames=HP_1431; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically dimethylates two adjacent adenosines (A1518 CC and A1519) in the loop of a conserved hairpin near the 3'-end of CC 16S rRNA in the 30S particle. May play a critical role in CC biogenesis of 30S subunits. {ECO:0000255|HAMAP-Rule:MF_00607}. CC -!- CATALYTIC ACTIVITY: 4 S-adenosyl-L-methionine + CC adenine(1518)/adenine(1519) in 16S rRNA = 4 S-adenosyl-L- CC homocysteine + N(6)-dimethyladenine(1518)/N(6)- CC dimethyladenine(1519) in 16S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_00607}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00607}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. rRNA adenine N(6)-methyltransferase CC family. RsmA subfamily. {ECO:0000255|HAMAP-Rule:MF_00607}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08470.1; -; Genomic_DNA. DR PIR; G64698; G64698. DR RefSeq; NP_208222.1; NC_000915.1. DR RefSeq; WP_000259453.1; NC_018939.1. DR ProteinModelPortal; O25972; -. DR STRING; 85962.HP1431; -. DR PaxDb; O25972; -. DR PRIDE; O25972; -. DR EnsemblBacteria; AAD08470; AAD08470; HP_1431. DR GeneID; 899864; -. DR KEGG; heo:C694_07400; -. DR KEGG; hpy:HP1431; -. DR PATRIC; 20594261; VBIHelPyl33062_1500. DR eggNOG; ENOG4105D1X; Bacteria. DR eggNOG; COG0030; LUCA. DR KO; K02528; -. DR OMA; AQKKPFG; -. DR OrthoDB; EOG66F08Z; -. DR BioCyc; HPY:HP1431-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0052908; F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0000179; F:rRNA (adenine-N6,N6-)-dimethyltransferase activity; IEA:InterPro. DR Gene3D; 1.10.8.100; -; 1. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00607; 16SrRNA_methyltr_A; 1. DR InterPro; IPR001737; KsgA/Erm. DR InterPro; IPR023165; rRNA_Ade_diMease-like. DR InterPro; IPR020596; rRNA_Ade_Mease_Trfase_CS. DR InterPro; IPR020598; rRNA_Ade_methylase_Trfase_N. DR InterPro; IPR011530; rRNA_adenine_dimethylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR11727; PTHR11727; 1. DR Pfam; PF00398; RrnaAD; 1. DR SMART; SM00650; rADc; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00755; ksgA; 1. DR PROSITE; PS01131; RRNA_A_DIMETH; 1. DR PROSITE; PS51689; SAM_RNA_A_N6_MT; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW RNA-binding; rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 271 Ribosomal RNA small subunit FT methyltransferase A. FT /FTId=PRO_0000101540. FT BINDING 11 11 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00607}. FT BINDING 13 13 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00607}. FT BINDING 38 38 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00607}. FT BINDING 58 58 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_00607}. FT BINDING 86 86 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_00607}. FT BINDING 101 101 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_00607}. SQ SEQUENCE 271 AA; 30644 MW; 870D11C671A7DB91 CRC64; MVVAKKSLGQ HFLTDESFLD RIVNALPPLN PLKLVEIGVG LGDLTLKLLD RYPLKTYEID SHLCEKMRSK LKAQKKPFKL ELVEKDALFL KEEEPYFLIS NLPYYIATRL VLNAFKDPKC RGLLVMTQKE VALKFCAKDS QNALSVLAHT IGNATLLFDV PPSAFSPPPK VFSSVFEVIK EPLKEKALAS LAQAPFFEEA LQKGFEMLED FLKACFSSPR KTLSNNLKKS VSYREKLDKV LDFLALENQP TSVRASEIKD YLKLLNYLLK G // ID RSMI_HELPY Reviewed; 287 AA. AC P56204; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Ribosomal RNA small subunit methyltransferase I {ECO:0000255|HAMAP-Rule:MF_01877}; DE EC=2.1.1.198 {ECO:0000255|HAMAP-Rule:MF_01877}; DE AltName: Full=16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01877}; DE AltName: Full=rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000255|HAMAP-Rule:MF_01877}; GN Name=rsmI {ECO:0000255|HAMAP-Rule:MF_01877}; GN OrderedLocusNames=HP_0552; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the 2'-O-methylation of the ribose of cytidine CC 1402 (C1402) in 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01877}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + cytidine(1402) in CC 16S rRNA = S-adenosyl-L-homocysteine + 2'-O-methylcytidine(1402) CC in 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01877}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01877}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. RsmI CC family. {ECO:0000255|HAMAP-Rule:MF_01877}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07618.1; -; Genomic_DNA. DR PIR; H64588; H64588. DR RefSeq; NP_207347.1; NC_000915.1. DR RefSeq; WP_000965287.1; NC_018939.1. DR ProteinModelPortal; P56204; -. DR DIP; DIP-3639N; -. DR IntAct; P56204; 3. DR MINT; MINT-186801; -. DR STRING; 85962.HP0552; -. DR PaxDb; P56204; -. DR PRIDE; P56204; -. DR EnsemblBacteria; AAD07618; AAD07618; HP_0552. DR GeneID; 899275; -. DR KEGG; heo:C694_02855; -. DR KEGG; hpy:HP0552; -. DR PATRIC; 20592379; VBIHelPyl33062_0578. DR eggNOG; ENOG4105CU0; Bacteria. DR eggNOG; COG0313; LUCA. DR KO; K07056; -. DR OMA; REFIAFH; -. DR OrthoDB; EOG6677TH; -. DR BioCyc; HPY:HP0552-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0070677; F:rRNA (cytosine-2'-O-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000453; P:enzyme-directed rRNA 2'-O-methylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR HAMAP; MF_01877; 16SrRNA_methyltr_I; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR008189; rRNA_ssu_MeTfrase_I. DR InterPro; IPR018063; SAM_MeTrfase_RsmI_CS. DR Pfam; PF00590; TP_methylase; 1. DR PIRSF; PIRSF005917; MTase_YraL; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR00096; TIGR00096; 1. DR PROSITE; PS01296; RSMI; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 287 Ribosomal RNA small subunit FT methyltransferase I. FT /FTId=PRO_0000211941. SQ SEQUENCE 287 AA; 32719 MW; 443F19E96159EFE9 CRC64; MLYFLPTPIG NLADITLRAL EVLERCEVFL CEDTRVSKRL LHLLAQNPII SHSFPNIATK KREFIAFHSH NDQEFLNQIK PSFFDKEIAV MSDAGMPSLS DPGMSLAAYA LKHNIQYDVL PGANALTTAF CASGFLEGRF FYAGFLPHKS KERRLKIAKI LNALAYLEEK TPVVFYESPH RLLETLKDLN DLAKGMHLFA AKELTKLHQQ YYLGEVSQII ERLQQSTIQG EWVLVLLNEK KIEPCMGLSA LLELDLPPKI KAKIEAVMTQ KNAKELYFQR LLEEKNQ // ID RS5_HELPY Reviewed; 147 AA. AC P66572; P56012; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 10-JUL-2007, sequence version 2. DT 09-DEC-2015, entry version 67. DE RecName: Full=30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; GN Name=rpsE {ECO:0000255|HAMAP-Rule:MF_01307}; GN OrderedLocusNames=HP_1302; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: With S4 and S12 plays an important role in translational CC accuracy. {ECO:0000255|HAMAP-Rule:MF_01307}. CC -!- FUNCTION: Located at the back of the 30S subunit body where it CC stabilizes the conformation of the head with respect to the body. CC {ECO:0000255|HAMAP-Rule:MF_01307}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S4 CC and S8. {ECO:0000255|HAMAP-Rule:MF_01307}. CC -!- DOMAIN: The N-terminal domain interacts with the head of the 30S CC subunit; the C-terminal domain interacts with the body and CC contacts protein S4. The interaction surface between S4 and S5 is CC involved in control of translational fidelity. CC -!- SIMILARITY: Belongs to the ribosomal protein S5P family. CC {ECO:0000255|HAMAP-Rule:MF_01307}. CC -!- SIMILARITY: Contains 1 S5 DRBM domain. {ECO:0000255|HAMAP- CC Rule:MF_01307}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08343.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08343.1; ALT_INIT; Genomic_DNA. DR PIR; F64682; F64682. DR RefSeq; NP_208094.2; NC_000915.1. DR RefSeq; WP_001860543.1; NC_018939.1. DR ProteinModelPortal; P66572; -. DR SMR; P66572; 5-146. DR STRING; 85962.HP1302; -. DR PaxDb; P66572; -. DR EnsemblBacteria; AAD08343; AAD08343; HP_1302. DR GeneID; 900284; -. DR KEGG; heo:C694_06725; -. DR KEGG; hpy:HP1302; -. DR PATRIC; 20593985; VBIHelPyl33062_1363. DR eggNOG; ENOG4108RA9; Bacteria. DR eggNOG; COG0098; LUCA. DR KO; K02988; -. DR OMA; HKYNASK; -. DR OrthoDB; EOG6FJNM5; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.160.20; -; 1. DR Gene3D; 3.30.230.10; -; 1. DR HAMAP; MF_01307_B; Ribosomal_S5_B; 1. DR InterPro; IPR014720; dsRBD_dom. DR InterPro; IPR000851; Ribosomal_S5. DR InterPro; IPR005712; Ribosomal_S5_bac-type. DR InterPro; IPR005324; Ribosomal_S5_C. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR013810; Ribosomal_S5_N. DR InterPro; IPR018192; Ribosomal_S5_N_CS. DR PANTHER; PTHR13718; PTHR13718; 1. DR Pfam; PF00333; Ribosomal_S5; 1. DR Pfam; PF03719; Ribosomal_S5_C; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR TIGRFAMs; TIGR01021; rpsE_bact; 1. DR PROSITE; PS00585; RIBOSOMAL_S5; 1. DR PROSITE; PS50881; S5_DSRBD; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 147 30S ribosomal protein S5. FT /FTId=PRO_0000131525. FT DOMAIN 9 72 S5 DRBM. {ECO:0000255|HAMAP- FT Rule:MF_01307}. SQ SEQUENCE 147 AA; 15835 MW; 6C44125A36053644 CRC64; MEEINREEFQ EVVVNIGRVT KVVKGGRRFR FNALVVVGNK NGLVGFGLGK AKEVPDAIKK AVDDAFKNLI HVTIKGTTIA HDIEHKYNAS RILLKPASEG TGVIAGGSTR PIVELAGIKD ILTKSLGSNN PYNVVRATFD ALAKIKA // ID RS6_HELPY Reviewed; 142 AA. AC P56013; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=30S ribosomal protein S6; GN Name=rpsF; OrderedLocusNames=HP_1246; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Binds together with S18 to 16S ribosomal RNA. CC {ECO:0000250}. CC -!- INTERACTION: CC P66459:rpsR; NbExp=4; IntAct=EBI-7719651, EBI-7719400; CC -!- SIMILARITY: Belongs to the ribosomal protein S6P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08292.1; -; Genomic_DNA. DR PIR; F64675; F64675. DR RefSeq; NP_208038.1; NC_000915.1. DR RefSeq; WP_001216713.1; NC_018939.1. DR ProteinModelPortal; P56013; -. DR DIP; DIP-3684N; -. DR IntAct; P56013; 7. DR MINT; MINT-162949; -. DR STRING; 85962.HP1246; -. DR PaxDb; P56013; -. DR PRIDE; P56013; -. DR DNASU; 898775; -. DR EnsemblBacteria; AAD08292; AAD08292; HP_1246. DR GeneID; 898775; -. DR KEGG; heo:C694_06440; -. DR KEGG; hpy:HP1246; -. DR PATRIC; 20593869; VBIHelPyl33062_1305. DR eggNOG; ENOG4108ZDX; Bacteria. DR eggNOG; COG0360; LUCA. DR KO; K02990; -. DR OMA; YEIQKKS; -. DR OrthoDB; EOG6P33DH; -. DR BioCyc; HPY:HP1246-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.60; -; 1. DR HAMAP; MF_00360; Ribosomal_S6; 1. DR InterPro; IPR000529; Ribosomal_S6. DR InterPro; IPR020815; Ribosomal_S6_CS. DR InterPro; IPR020814; Ribosomal_S6_plastid/chlpt. DR InterPro; IPR014717; Transl_elong_EF1B/ribosomal_S6. DR Pfam; PF01250; Ribosomal_S6; 1. DR SUPFAM; SSF54995; SSF54995; 1. DR TIGRFAMs; TIGR00166; S6; 1. DR PROSITE; PS01048; RIBOSOMAL_S6; 1. PE 1: Evidence at protein level; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 142 30S ribosomal protein S6. FT /FTId=PRO_0000176776. SQ SEQUENCE 142 AA; 16971 MW; 2B6D8C4667D04BDB CRC64; MRHYETMFIL KPTLVEEEIK SKIEFYKEVI TKHHGVIETS LDMGMRNLAY EIKKHKRGYY YVAYFKAEPS MIVELERLYR INEDVLRFIV IKYESKKEVE AWHALVDRAN KKPSHAKEKH EKTEHTHSHH TEEAESVGSH SE // ID RS7_HELPY Reviewed; 155 AA. AC P66609; P56014; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 71. DE RecName: Full=30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; GN Name=rpsG {ECO:0000255|HAMAP-Rule:MF_00480}; GN OrderedLocusNames=HP_1196; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA where it nucleates assembly of the head CC domain of the 30S subunit. Is located at the subunit interface CC close to the decoding center, probably blocks exit of the E-site CC tRNA. {ECO:0000255|HAMAP-Rule:MF_00480}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S9 CC and S11. {ECO:0000255|HAMAP-Rule:MF_00480}. CC -!- SIMILARITY: Belongs to the ribosomal protein S7P family. CC {ECO:0000255|HAMAP-Rule:MF_00480}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08240.1; -; Genomic_DNA. DR PIR; D64669; D64669. DR RefSeq; NP_207987.1; NC_000915.1. DR RefSeq; WP_001254357.1; NC_018939.1. DR ProteinModelPortal; P66609; -. DR SMR; P66609; 9-147. DR IntAct; P66609; 2. DR MINT; MINT-4077902; -. DR STRING; 85962.HP1196; -. DR PaxDb; P66609; -. DR PRIDE; P66609; -. DR DNASU; 899958; -. DR EnsemblBacteria; AAD08240; AAD08240; HP_1196. DR GeneID; 899958; -. DR KEGG; heo:C694_06185; -. DR KEGG; hpy:HP1196; -. DR PATRIC; 20593749; VBIHelPyl33062_1252. DR eggNOG; ENOG4108UHY; Bacteria. DR eggNOG; COG0049; LUCA. DR KO; K02992; -. DR OMA; EVHRMAD; -. DR OrthoDB; EOG6P5ZKW; -. DR BioCyc; HPY:HP1196-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.455.10; -; 1. DR HAMAP; MF_00480_B; Ribosomal_S7_B; 1. DR InterPro; IPR000235; Ribosomal_S5/S7. DR InterPro; IPR005717; Ribosomal_S7_bac/org-type. DR InterPro; IPR020606; Ribosomal_S7_CS. DR InterPro; IPR023798; Ribosomal_S7_dom. DR PANTHER; PTHR11205; PTHR11205; 1. DR Pfam; PF00177; Ribosomal_S7; 1. DR PIRSF; PIRSF002122; RPS7p_RPS7a_RPS5e_RPS7o; 1. DR SUPFAM; SSF47973; SSF47973; 1. DR TIGRFAMs; TIGR01029; rpsG_bact; 1. DR PROSITE; PS00052; RIBOSOMAL_S7; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA-binding. FT CHAIN 1 155 30S ribosomal protein S7. FT /FTId=PRO_0000124273. SQ SEQUENCE 155 AA; 17971 MW; 8E987C184A4A4E29 CRC64; MRRRKAPVRE VLGDPVYGNK VVTKFINKMM FDGKKSVAEK IIYKAFNKIE EKSGEKGIEV FEKALERVRP LVEVRSRRVG GATYQVPVEV RASRQQSLSI RWILEATRKR NERMMVDRLA NELMDAASDK GAAFKKKEDV HKMAEANKAF AHYRW // ID RS8_HELPY Reviewed; 131 AA. AC P66621; P56015; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 56. DE RecName: Full=30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; GN Name=rpsH {ECO:0000255|HAMAP-Rule:MF_01302}; GN OrderedLocusNames=HP_1305; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA central domain where it helps coordinate CC assembly of the platform of the 30S subunit. {ECO:0000255|HAMAP- CC Rule:MF_01302}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S5 CC and S12. {ECO:0000255|HAMAP-Rule:MF_01302}. CC -!- SIMILARITY: Belongs to the ribosomal protein S8P family. CC {ECO:0000255|HAMAP-Rule:MF_01302}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08346.1; -; Genomic_DNA. DR PIR; A64683; A64683. DR RefSeq; NP_208097.1; NC_000915.1. DR RefSeq; WP_000245805.1; NC_018939.1. DR ProteinModelPortal; P66621; -. DR STRING; 85962.HP1305; -. DR PaxDb; P66621; -. DR PRIDE; P66621; -. DR EnsemblBacteria; AAD08346; AAD08346; HP_1305. DR GeneID; 899909; -. DR KEGG; heo:C694_06740; -. DR KEGG; hpy:HP1305; -. DR PATRIC; 20593991; VBIHelPyl33062_1366. DR eggNOG; ENOG4108UJY; Bacteria. DR eggNOG; COG0096; LUCA. DR KO; K02994; -. DR OMA; RIYKNTR; -. DR OrthoDB; EOG6Z0QH1; -. DR BioCyc; HPY:HP1305-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01302_B; Ribosomal_S8_B; 1. DR InterPro; IPR000630; Ribosomal_S8. DR PANTHER; PTHR11758; PTHR11758; 1. DR Pfam; PF00410; Ribosomal_S8; 1. DR SUPFAM; SSF56047; SSF56047; 1. DR PROSITE; PS00053; RIBOSOMAL_S8; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 131 30S ribosomal protein S8. FT /FTId=PRO_0000126419. SQ SEQUENCE 131 AA; 15184 MW; AC5E0E973BE21C8B CRC64; MVNDIIADSL TRLRNASMRR LEFTQLYYAK IVVSILEIFK EKGFIKDFNV KDKDKKQSVY VQLAYDEKGH SKISEVKRLS KPGRRVYKQK NELKRFKNGY GVIVVSTSKG VITNEEAYRQ NVGGEVLCSI W // ID RS9_HELPY Reviewed; 129 AA. AC P66637; P56016; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 63. DE RecName: Full=30S ribosomal protein S9; GN Name=rpsI; OrderedLocusNames=HP_0083; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ribosomal protein S9P family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07153.1; -; Genomic_DNA. DR PIR; C64530; C64530. DR RefSeq; NP_206883.1; NC_000915.1. DR RefSeq; WP_001227269.1; NC_018939.1. DR ProteinModelPortal; P66637; -. DR SMR; P66637; 3-129. DR IntAct; P66637; 4. DR MINT; MINT-4076780; -. DR STRING; 85962.HP0083; -. DR PaxDb; P66637; -. DR PRIDE; P66637; -. DR EnsemblBacteria; AAD07153; AAD07153; HP_0083. DR GeneID; 900168; -. DR KEGG; heo:C694_00405; -. DR KEGG; hpy:HP0083; -. DR PATRIC; 20591375; VBIHelPyl33062_0088. DR eggNOG; ENOG4108UJD; Bacteria. DR eggNOG; COG0103; LUCA. DR KO; K02996; -. DR OMA; IKQGAAR; -. DR OrthoDB; EOG6MWNH0; -. DR BioCyc; HPY:HP0083-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR HAMAP; MF_00532_B; Ribosomal_S9_B; 1. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR000754; Ribosomal_S9. DR InterPro; IPR023035; Ribosomal_S9_bac/plastid. DR InterPro; IPR020574; Ribosomal_S9_CS. DR PANTHER; PTHR21569; PTHR21569; 1. DR Pfam; PF00380; Ribosomal_S9; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR PROSITE; PS00360; RIBOSOMAL_S9; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 129 30S ribosomal protein S9. FT /FTId=PRO_0000111364. SQ SEQUENCE 129 AA; 14508 MW; 3E9E3B274A78FA7B CRC64; MRKIYATGKR KTAIAKVWLT PGKGELSINE QSLNQWLGGH EAIKMKVMQP LLLTKQEQSV DIKAVVFGGG YSAQAEALRH GISKALNAYD IAFRAILKPK GLLTRDSRVV ERKKYGKRKA RRSPQFSKR // ID RUVB_HELPY Reviewed; 336 AA. AC O25699; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 101. DE RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016}; DE EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00016}; GN Name=ruvB {ECO:0000255|HAMAP-Rule:MF_00016}; GN OrderedLocusNames=HP_1059; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The RuvA-RuvB complex in the presence of ATP renatures CC cruciform structure in supercoiled DNA with palindromic sequence, CC indicating that it may promote strand exchange reactions in CC homologous recombination. RuvAB is a helicase that mediates the CC Holliday junction migration by localized denaturation and CC reannealing. {ECO:0000255|HAMAP-Rule:MF_00016}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00016}. CC -!- SUBUNIT: Forms a complex with RuvA. {ECO:0000255|HAMAP- CC Rule:MF_00016}. CC -!- SIMILARITY: Belongs to the RuvB family. {ECO:0000255|HAMAP- CC Rule:MF_00016}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08100.1; -; Genomic_DNA. DR PIR; C64652; C64652. DR RefSeq; NP_207850.1; NC_000915.1. DR RefSeq; WP_000664449.1; NC_018939.1. DR ProteinModelPortal; O25699; -. DR SMR; O25699; 20-328. DR STRING; 85962.HP1059; -. DR PaxDb; O25699; -. DR PRIDE; O25699; -. DR EnsemblBacteria; AAD08100; AAD08100; HP_1059. DR GeneID; 899594; -. DR KEGG; heo:C694_05475; -. DR KEGG; hpy:HP1059; -. DR PATRIC; 20593455; VBIHelPyl33062_1108. DR eggNOG; ENOG4105CKJ; Bacteria. DR eggNOG; COG2255; LUCA. DR KO; K03551; -. DR OMA; YEPYLMQ; -. DR OrthoDB; EOG6SR93S; -. DR BioCyc; HPY:HP1059-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009378; F:four-way junction helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00016; DNA_helic_RuvB; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR004605; DNA_helicase_Holl-junc_RuvB. DR InterPro; IPR008823; DNA_helicase_Holl-junc_RuvB_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR008824; RuvB_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF05491; RuvB_C; 1. DR Pfam; PF05496; RuvB_N; 1. DR ProDom; PD005323; DNA_helicase_Holl-junc_RuvB_C; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00635; ruvB; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA damage; DNA recombination; KW DNA repair; Helicase; Hydrolase; Nucleotide-binding; KW Reference proteome; SOS response. FT CHAIN 1 336 Holliday junction ATP-dependent DNA FT helicase RuvB. FT /FTId=PRO_0000165540. FT NP_BIND 60 67 ATP. {ECO:0000255|HAMAP-Rule:MF_00016}. SQ SEQUENCE 336 AA; 37360 MW; 4FA54074AF6F36A0 CRC64; MKERIVNLET LDFEISQEVS LRPSLWEDFI GQEKIKSNLQ ISICAAKKRQ ESLDHMLFFG PPGLGKTSIS HIIAKEMETN IKITAAPMIE KSGDLAAILT NLQAKDILFI DEIHRLSPAI EEVLYPAMED FRLDIIIGSG PAAQTIKIDL PPFTLIGATT RAGMLSNPLR DRFGMSFRMQ FYNPSELALI IKKAAVKLNQ DIKQESADEI AKRSRGTPRI ALRLLKRVRD FALVKNSSLM DLNITLHALN ELGVNELGFD EADLAYLSLL ANAQGKPVGL NTIAASMRED EGTIEDVIEP FLLANGYLER TAKGRIATPK THELLKIPTL NPQTLF // ID RUVA_HELPY Reviewed; 183 AA. AC O25549; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031}; DE EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00031}; GN Name=ruvA {ECO:0000255|HAMAP-Rule:MF_00031}; GN OrderedLocusNames=HP_0883; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The RuvA-RuvB complex in the presence of ATP renatures CC cruciform structure in supercoiled DNA with palindromic sequence, CC indicating that it may promote strand exchange reactions in CC homologous recombination. RuvAB is a helicase that mediates the CC Holliday junction migration by localized denaturation and CC reannealing. RuvA stimulates, in the presence of DNA, the weak CC ATPase activity of RuvB. {ECO:0000255|HAMAP-Rule:MF_00031}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00031}. CC -!- SUBUNIT: Forms a complex with RuvB. {ECO:0000255|HAMAP- CC Rule:MF_00031}. CC -!- SIMILARITY: Belongs to the RuvA family. {ECO:0000255|HAMAP- CC Rule:MF_00031}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07932.1; -; Genomic_DNA. DR PIR; C64630; C64630. DR RefSeq; NP_207676.1; NC_000915.1. DR RefSeq; WP_000635172.1; NC_018939.1. DR ProteinModelPortal; O25549; -. DR IntAct; O25549; 1. DR STRING; 85962.HP0883; -. DR PaxDb; O25549; -. DR PRIDE; O25549; -. DR EnsemblBacteria; AAD07932; AAD07932; HP_0883. DR GeneID; 899411; -. DR KEGG; heo:C694_04525; -. DR KEGG; hpy:HP0883; -. DR PATRIC; 20593055; VBIHelPyl33062_0915. DR eggNOG; ENOG4105KA4; Bacteria. DR eggNOG; COG0632; LUCA. DR KO; K03550; -. DR OMA; PNEFENI; -. DR OrthoDB; EOG679THG; -. DR BioCyc; HPY:HP0883-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009379; C:Holliday junction helicase complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009378; F:four-way junction helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00031; DNA_helic_RuvA; 1. DR InterPro; IPR011114; DNA_helicas_Holl-junc_RuvA_C. DR InterPro; IPR013849; DNA_helicase_Holl-junc_RuvA_I. DR InterPro; IPR003583; Hlx-hairpin-Hlx_DNA-bd_motif. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000085; RuvA. DR InterPro; IPR010994; RuvA_2-like. DR Pfam; PF07499; RuvA_C; 1. DR Pfam; PF01330; RuvA_N; 1. DR SMART; SM00278; HhH1; 2. DR SUPFAM; SSF46929; SSF46929; 1. DR SUPFAM; SSF47781; SSF47781; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00084; ruvA; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; DNA damage; DNA recombination; KW DNA repair; DNA-binding; Helicase; Hydrolase; Nucleotide-binding; KW Reference proteome; SOS response. FT CHAIN 1 183 Holliday junction ATP-dependent DNA FT helicase RuvA. FT /FTId=PRO_0000094639. SQ SEQUENCE 183 AA; 20176 MW; 2AE1F86A4BCBE512 CRC64; MIVGLIGVVE KISALEVHIE VQGVVYGVQV SMRTAALLEA GQKARLKILQ VIKEDAHLLY GFLEEGEKIL FERLLKINGV GGRIALAILS SFSPNEFESI IATKEVKRLQ QVPGIGKKLA DKIMVDLIGF FIQDENRPAR NEVFLALESL GFKSAEINQV LKTLKPNLSI EAAIKEALQQ LRS // ID SCOA_HELPY Reviewed; 232 AA. AC P56006; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A; DE EC=2.8.3.5; DE AltName: Full=Succinyl-CoA:3-oxoacid CoA-transferase; DE Short=OXCT A; GN Name=scoA; OrderedLocusNames=HP_0691; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND CATALYTIC ACTIVITY. RC STRAIN=69A; RX PubMed=9325289; DOI=10.1074/jbc.272.41.25659; RA Corthesy-Theulaz I.E., Bergonzelli G.E., Henry H., Bachmann D., RA Schorderet D.F., Blum A.L., Ornston L.N.; RT "Cloning and characterization of Helicobacter pylori succinyl RT CoA:acetoacetate CoA-transferase, a novel prokaryotic member of the RT CoA-transferase family."; RL J. Biol. Chem. 272:25659-25667(1997). CC -!- CATALYTIC ACTIVITY: Succinyl-CoA + a 3-oxo acid = succinate + a 3- CC oxoacyl-CoA. {ECO:0000269|PubMed:9325289}. CC -!- SUBUNIT: Heterodimer of a subunit A and a subunit B. CC -!- INTERACTION: CC P56007:scoB; NbExp=3; IntAct=EBI-7723842, EBI-7724043; CC -!- SIMILARITY: Belongs to the 3-oxoacid CoA-transferase subunit A CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07743.1; -; Genomic_DNA. DR PIR; C64606; C64606. DR RefSeq; NP_207485.1; NC_000915.1. DR RefSeq; WP_001045154.1; NC_018939.1. DR PDB; 3RRL; X-ray; 2.29 A; A/C=1-232. DR PDBsum; 3RRL; -. DR ProteinModelPortal; P56006; -. DR SMR; P56006; 1-229. DR DIP; DIP-3481N; -. DR IntAct; P56006; 2. DR MINT; MINT-176385; -. DR STRING; 85962.HP0691; -. DR PaxDb; P56006; -. DR PRIDE; P56006; -. DR EnsemblBacteria; AAD07743; AAD07743; HP_0691. DR GeneID; 899012; -. DR KEGG; heo:C694_03560; -. DR KEGG; hpy:HP0691; -. DR PATRIC; 20592667; VBIHelPyl33062_0722. DR eggNOG; ENOG4107QP7; Bacteria. DR eggNOG; COG1788; LUCA. DR KO; K01028; -. DR OMA; VKAHRAD; -. DR OrthoDB; EOG6HMXJG; -. DR BioCyc; HPY:HP0691-MONOMER; -. DR BioCyc; MetaCyc:HP0691-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008260; F:3-oxoacid CoA-transferase activity; IEA:UniProtKB-EC. DR InterPro; IPR012792; 3-oxoacid_CoA-transf_A. DR InterPro; IPR004165; CoA_trans_fam_I. DR InterPro; IPR004163; CoA_transf_BS. DR PANTHER; PTHR13707; PTHR13707; 1. DR Pfam; PF01144; CoA_trans; 1. DR SMART; SM00882; CoA_trans; 1. DR TIGRFAMs; TIGR02429; pcaI_scoA_fam; 1. DR PROSITE; PS01273; COA_TRANSF_1; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome; Transferase. FT CHAIN 1 232 Succinyl-CoA:3-ketoacid coenzyme A FT transferase subunit A. FT /FTId=PRO_0000157909. FT REGION 24 30 CoA-binding. {ECO:0000255}. FT CONFLICT 14 14 A -> T (in Ref. 2; no nucleotide entry). FT {ECO:0000305}. FT CONFLICT 108 109 HA -> RP (in Ref. 2; no nucleotide FT entry). {ECO:0000305}. FT CONFLICT 116 121 AYYTPT -> LTTPQP (in Ref. 2; no FT nucleotide entry). {ECO:0000305}. FT CONFLICT 129 139 QGKESREFNGK -> PRQGIQGSLTAR (in Ref. 2; FT no nucleotide entry). {ECO:0000305}. FT CONFLICT 231 231 T -> A (in Ref. 2; no nucleotide entry). FT {ECO:0000305}. FT STRAND 4 7 {ECO:0000244|PDB:3RRL}. FT HELIX 9 12 {ECO:0000244|PDB:3RRL}. FT STRAND 20 23 {ECO:0000244|PDB:3RRL}. FT HELIX 33 42 {ECO:0000244|PDB:3RRL}. FT STRAND 46 50 {ECO:0000244|PDB:3RRL}. FT STRAND 57 59 {ECO:0000244|PDB:3RRL}. FT HELIX 60 65 {ECO:0000244|PDB:3RRL}. FT TURN 66 68 {ECO:0000244|PDB:3RRL}. FT STRAND 70 76 {ECO:0000244|PDB:3RRL}. FT HELIX 82 89 {ECO:0000244|PDB:3RRL}. FT STRAND 92 97 {ECO:0000244|PDB:3RRL}. FT HELIX 100 112 {ECO:0000244|PDB:3RRL}. FT STRAND 116 120 {ECO:0000244|PDB:3RRL}. FT TURN 121 124 {ECO:0000244|PDB:3RRL}. FT HELIX 126 128 {ECO:0000244|PDB:3RRL}. FT STRAND 133 136 {ECO:0000244|PDB:3RRL}. FT STRAND 139 145 {ECO:0000244|PDB:3RRL}. FT STRAND 149 155 {ECO:0000244|PDB:3RRL}. FT STRAND 157 160 {ECO:0000244|PDB:3RRL}. FT HELIX 169 171 {ECO:0000244|PDB:3RRL}. FT HELIX 175 180 {ECO:0000244|PDB:3RRL}. FT STRAND 182 193 {ECO:0000244|PDB:3RRL}. FT TURN 200 202 {ECO:0000244|PDB:3RRL}. FT HELIX 207 209 {ECO:0000244|PDB:3RRL}. FT STRAND 211 215 {ECO:0000244|PDB:3RRL}. SQ SEQUENCE 232 AA; 25362 MW; 83CFEE57C0192F3D CRC64; MNKVITDLDK ALSALKDGDT ILVGGFGLCG IPEYAIDYIY KKGIKDLIVV SNNCGVDDFG LGILLEKKQI KKIIASYVGE NKIFESQMLN GEIEVVLTPQ GTLAENLHAG GAGIPAYYTP TGVGTLIAQG KESREFNGKE YILERAITGD YGLIKAYKSD TLGNLVFRKT ARNFNPLCAM AAKICVAEVE EIVPAGELDP DEIHLPGIYV QHIYKGEKFE KRIEKITTRS TK // ID SCOB_HELPY Reviewed; 207 AA. AC P56007; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 99. DE RecName: Full=Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B; DE EC=2.8.3.5; DE AltName: Full=OXCT B; DE AltName: Full=Succinyl-CoA:3-oxoacid CoA-transferase; GN Name=scoB; OrderedLocusNames=HP_0692; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND CHARACTERIZATION. RC STRAIN=69A; RX PubMed=9325289; DOI=10.1074/jbc.272.41.25659; RA Corthesy-Theulaz I.E., Bergonzelli G.E., Henry H., Bachmann D., RA Schorderet D.F., Blum A.L., Ornston L.N.; RT "Cloning and characterization of Helicobacter pylori succinyl RT CoA:acetoacetate CoA-transferase, a novel prokaryotic member of the RT CoA-transferase family."; RL J. Biol. Chem. 272:25659-25667(1997). CC -!- CATALYTIC ACTIVITY: Succinyl-CoA + a 3-oxo acid = succinate + a 3- CC oxoacyl-CoA. {ECO:0000255|PROSITE-ProRule:PRU10034}. CC -!- SUBUNIT: Heterodimer of a subunit A and a subunit B. CC -!- INTERACTION: CC P56006:scoA; NbExp=3; IntAct=EBI-7724043, EBI-7723842; CC -!- SIMILARITY: Belongs to the 3-oxoacid CoA-transferase subunit B CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07744.1; -; Genomic_DNA. DR EMBL; AJ000086; CAA03917.1; -; Genomic_DNA. DR PIR; D64606; D64606. DR RefSeq; NP_207486.1; NC_000915.1. DR RefSeq; WP_001206261.1; NC_018939.1. DR PDB; 3RRL; X-ray; 2.29 A; B/D=1-207. DR PDBsum; 3RRL; -. DR ProteinModelPortal; P56007; -. DR SMR; P56007; 2-205. DR DIP; DIP-3482N; -. DR IntAct; P56007; 4. DR MINT; MINT-168328; -. DR STRING; 85962.HP0692; -. DR PaxDb; P56007; -. DR PRIDE; P56007; -. DR DNASU; 899313; -. DR EnsemblBacteria; AAD07744; AAD07744; HP_0692. DR GeneID; 899313; -. DR KEGG; heo:C694_03565; -. DR KEGG; hpy:HP0692; -. DR PATRIC; 20592669; VBIHelPyl33062_0723. DR eggNOG; ENOG4108IIH; Bacteria. DR eggNOG; COG2057; LUCA. DR KO; K01029; -. DR OMA; GVGCVKK; -. DR OrthoDB; EOG6HMXJG; -. DR BioCyc; HPY:HP0692-MONOMER; -. DR BioCyc; MetaCyc:HP0692-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008260; F:3-oxoacid CoA-transferase activity; IEA:UniProtKB-EC. DR InterPro; IPR012791; 3-oxoacid_CoA-transf_B. DR InterPro; IPR004165; CoA_trans_fam_I. DR InterPro; IPR004164; CoA_transf_AS. DR PANTHER; PTHR13707; PTHR13707; 1. DR Pfam; PF01144; CoA_trans; 1. DR SMART; SM00882; CoA_trans; 1. DR TIGRFAMs; TIGR02428; pcaJ_scoB_fam; 1. DR PROSITE; PS01274; COA_TRANSF_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome; Transferase. FT CHAIN 1 207 Succinyl-CoA:3-ketoacid coenzyme A FT transferase subunit B. FT /FTId=PRO_0000157921. FT ACT_SITE 43 43 {ECO:0000255|PROSITE-ProRule:PRU10034}. FT CONFLICT 70 70 I -> V (in Ref. 2; CAA03917). FT {ECO:0000305}. FT CONFLICT 196 196 K -> R (in Ref. 2; CAA03917). FT {ECO:0000305}. FT CONFLICT 206 206 R -> H (in Ref. 2; CAA03917). FT {ECO:0000305}. FT HELIX 2 10 {ECO:0000244|PDB:3RRL}. FT STRAND 18 21 {ECO:0000244|PDB:3RRL}. FT HELIX 25 33 {ECO:0000244|PDB:3RRL}. FT STRAND 34 36 {ECO:0000244|PDB:3RRL}. FT STRAND 39 42 {ECO:0000244|PDB:3RRL}. FT TURN 43 45 {ECO:0000244|PDB:3RRL}. FT STRAND 46 49 {ECO:0000244|PDB:3RRL}. FT STRAND 67 69 {ECO:0000244|PDB:3RRL}. FT STRAND 72 78 {ECO:0000244|PDB:3RRL}. FT HELIX 81 89 {ECO:0000244|PDB:3RRL}. FT STRAND 94 98 {ECO:0000244|PDB:3RRL}. FT STRAND 101 104 {ECO:0000244|PDB:3RRL}. FT STRAND 112 114 {ECO:0000244|PDB:3RRL}. FT TURN 115 117 {ECO:0000244|PDB:3RRL}. FT HELIX 125 131 {ECO:0000244|PDB:3RRL}. FT STRAND 132 138 {ECO:0000244|PDB:3RRL}. FT STRAND 148 153 {ECO:0000244|PDB:3RRL}. FT STRAND 159 162 {ECO:0000244|PDB:3RRL}. FT STRAND 165 168 {ECO:0000244|PDB:3RRL}. FT STRAND 170 177 {ECO:0000244|PDB:3RRL}. FT STRAND 180 186 {ECO:0000244|PDB:3RRL}. FT HELIX 192 198 {ECO:0000244|PDB:3RRL}. SQ SEQUENCE 207 AA; 22263 MW; 1A4AC53C70A90F81 CRC64; MREAIIKRAA KELKEGMYVN LGIGLPTLVA NEVSGMNIVF QSENGLLGIG AYPLEGSVDA DLINAGKETI TVVPGASFFN SADSFAMIRG GHIDLAILGG MEVSQNGDLA NWMIPKKLIK GMGGAMDLVH GAKKVIVIME HCNKYGESKV KKECSLPLTG KGVVHQLITD LAVFEFSNNA MKLVELQEGV SLDQVKEKTE AEFEVRL // ID RUVC_HELPY Reviewed; 157 AA. AC O25544; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Crossover junction endodeoxyribonuclease RuvC; DE EC=3.1.22.4; DE AltName: Full=Holliday junction nuclease RuvC; DE AltName: Full=Holliday junction resolvase RuvC; GN Name=ruvC; OrderedLocusNames=HP_0877; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Nuclease that resolves Holliday junction intermediates CC in genetic recombination. Cleaves the cruciform structure in CC supercoiled DNA by nicking to strands with the same polarity at CC sites symmetrically opposed at the junction in the homologous arms CC and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl CC group (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage at a junction such as CC a reciprocal single-stranded crossover between two homologous DNA CC duplexes (Holliday junction). CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000250}; CC -!- INTERACTION: CC O25404:HP_0697; NbExp=3; IntAct=EBI-9261745, EBI-7513643; CC -!- SIMILARITY: Belongs to the RuvC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07925.1; -; Genomic_DNA. DR PIR; E64629; E64629. DR RefSeq; NP_207671.1; NC_000915.1. DR RefSeq; WP_001221153.1; NC_018939.1. DR ProteinModelPortal; O25544; -. DR IntAct; O25544; 4. DR STRING; 85962.HP0877; -. DR PaxDb; O25544; -. DR PRIDE; O25544; -. DR EnsemblBacteria; AAD07925; AAD07925; HP_0877. DR GeneID; 899406; -. DR KEGG; heo:C694_04490; -. DR KEGG; hpy:HP0877; -. DR PATRIC; 20593043; VBIHelPyl33062_0909. DR eggNOG; ENOG4105NHU; Bacteria. DR eggNOG; COG0817; LUCA. DR KO; K01159; -. DR OMA; ILHMIKL; -. DR OrthoDB; EOG6RG044; -. DR BioCyc; HPY:HP0877-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008821; F:crossover junction endodeoxyribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.10; -; 1. DR HAMAP; MF_00034; RuvC; 1. DR InterPro; IPR012337; RNaseH-like_dom. DR InterPro; IPR020563; X-over_junc_endoDNase_Mg_BS. DR InterPro; IPR002176; X-over_junc_endoDNase_RuvC. DR Pfam; PF02075; RuvC; 1. DR PRINTS; PR00696; RSOLVASERUVC. DR SUPFAM; SSF53098; SSF53098; 1. DR TIGRFAMs; TIGR00228; ruvC; 1. DR PROSITE; PS01321; RUVC; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA damage; DNA recombination; DNA repair; KW Hydrolase; Magnesium; Metal-binding; Nuclease; Reference proteome. FT CHAIN 1 157 Crossover junction endodeoxyribonuclease FT RuvC. FT /FTId=PRO_0000183105. FT METAL 7 7 Magnesium. {ECO:0000250}. FT METAL 66 66 Magnesium. {ECO:0000250}. FT METAL 139 139 Magnesium. {ECO:0000250}. FT METAL 142 142 Magnesium. {ECO:0000250}. SQ SEQUENCE 157 AA; 17424 MW; 99F99371D309A52C CRC64; MRILGIDPGS RKCGYAIISH ASNKLSLITA GFINITTTRL QEQILDLIEA LDCLLDRYEV NEVAIEDIFF GYNPKSVIKL AQFRGALSLK ILERIGNFSE YTPLQVKKAL TGNGKAAKEQ VAFMVKRLLN ITSEIKPLDI SDAIAVAITH AQRLKLH // ID SELA_HELPY Reviewed; 386 AA. AC O26043; DT 14-AUG-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=L-seryl-tRNA(Sec) selenium transferase {ECO:0000255|HAMAP-Rule:MF_00423}; DE EC=2.9.1.1 {ECO:0000255|HAMAP-Rule:MF_00423}; DE AltName: Full=Selenocysteine synthase {ECO:0000255|HAMAP-Rule:MF_00423}; DE Short=Sec synthase {ECO:0000255|HAMAP-Rule:MF_00423}; DE AltName: Full=Selenocysteinyl-tRNA(Sec) synthase {ECO:0000255|HAMAP-Rule:MF_00423}; GN Name=selA {ECO:0000255|HAMAP-Rule:MF_00423}; GN OrderedLocusNames=HP_1513; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) CC required for selenoprotein biosynthesis. {ECO:0000255|HAMAP- CC Rule:MF_00423}. CC -!- CATALYTIC ACTIVITY: L-seryl-tRNA(Sec) + selenophosphate = L- CC selenocysteinyl-tRNA(Sec) + phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00423}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00423}; CC -!- PATHWAY: Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) CC biosynthesis; selenocysteinyl-tRNA(Sec) from L-seryl-tRNA(Sec) CC (bacterial route): step 1/1. {ECO:0000255|HAMAP-Rule:MF_00423}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00423}. CC -!- SIMILARITY: Belongs to the SelA family. {ECO:0000255|HAMAP- CC Rule:MF_00423}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08554.1; -; Genomic_DNA. DR PIR; A64709; A64709. DR RefSeq; NP_208304.1; NC_000915.1. DR RefSeq; WP_001051152.1; NC_018939.1. DR ProteinModelPortal; O26043; -. DR DIP; DIP-3105N; -. DR IntAct; O26043; 15. DR MINT; MINT-180006; -. DR STRING; 85962.HP1513; -. DR PaxDb; O26043; -. DR PRIDE; O26043; -. DR EnsemblBacteria; AAD08554; AAD08554; HP_1513. DR GeneID; 899778; -. DR KEGG; heo:C694_07840; -. DR KEGG; hpy:HP1513; -. DR PATRIC; 20594443; VBIHelPyl33062_1590. DR eggNOG; ENOG4105C1Y; Bacteria. DR eggNOG; COG1921; LUCA. DR KO; K01042; -. DR OMA; LESFCVK; -. DR OrthoDB; EOG69WFGN; -. DR BioCyc; HPY:HP1513-MONOMER; -. DR UniPathway; UPA00906; UER00896. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004125; F:L-seryl-tRNASec selenium transferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0001514; P:selenocysteine incorporation; IEA:UniProtKB-HAMAP. DR GO; GO:0097056; P:selenocysteinyl-tRNA(Sec) biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.640.10; -; 1. DR HAMAP; MF_00423; SelA; 1. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR018319; SelA-like. DR InterPro; IPR004534; SelA_trans. DR Pfam; PF03841; SelA; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Protein biosynthesis; KW Pyridoxal phosphate; Reference proteome; Selenium; Transferase. FT CHAIN 1 386 L-seryl-tRNA(Sec) selenium transferase. FT /FTId=PRO_0000189607. FT MOD_RES 221 221 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00423}. SQ SEQUENCE 386 AA; 43995 MW; 8AC3DE6B50F3E859 CRC64; MAKETLEITP DLLKNPYQKI INASASVFDE KHGRSFFSTQ FYEKIEPYLK EVLTHPIDLE CDLNTAKKKN RLTPLKQLFK ACFNTEEILI VNNNTSAIFL IANALAQEKE IIVSYGELVG GDFNLKDILL NSGARLHLVG NINRAYLRDY RLALNENSKI LFKTHNPHFK KDTPFKDLQT LAKEHDLIDY YNLGDVDLSN RVALEEILAL KPSLLSFSAD KFFNSAQAGI IMGQKERVEA LKNHPLYRVL RVGKITLTLL FCSLKAWINH QEDITIHALL NQTKDALLQK ALKLYALLKP LELNVSIASS FSKIGNLFGR ELESFCVKIQ PKNTRALNSE KLYLKLFQKG VIARISCEFV CFEVFSLNEK DFEKIALVLE EILNKA // ID SECG_HELPY Reviewed; 199 AA. AC O25847; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-MAY-2016, entry version 95. DE RecName: Full=Protein-export membrane protein SecG; GN Name=secG; OrderedLocusNames=HP_1255; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in protein export. Participates in an early CC event of protein translocation (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass CC membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the SecG family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08301.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08301.1; ALT_INIT; Genomic_DNA. DR PIR; G64676; G64676. DR RefSeq; NP_208047.1; NC_000915.1. DR RefSeq; WP_000481148.1; NC_000915.1. DR RefSeq; WP_001862740.1; NC_018939.1. DR DIP; DIP-3688N; -. DR IntAct; O25847; 8. DR MINT; MINT-166264; -. DR STRING; 85962.HP1255; -. DR PaxDb; O25847; -. DR DNASU; 898868; -. DR EnsemblBacteria; AAD08301; AAD08301; HP_1255. DR GeneID; 898868; -. DR KEGG; heo:C694_06485; -. DR KEGG; hpy:HP1255; -. DR PATRIC; 20593887; VBIHelPyl33062_1314. DR eggNOG; ENOG4105NU9; Bacteria. DR eggNOG; COG1314; LUCA. DR KO; K03075; -. DR OMA; FMAKLTM; -. DR OrthoDB; EOG6DC6SJ; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015450; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; IEA:InterPro. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR InterPro; IPR004692; SecG. DR Pfam; PF03840; SecG; 1. DR PRINTS; PR01651; SECGEXPORT. DR TIGRFAMs; TIGR00810; secG; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Protein transport; KW Reference proteome; Translocation; Transmembrane; Transmembrane helix; KW Transport. FT CHAIN 1 199 Protein-export membrane protein SecG. FT /FTId=PRO_0000157229. FT TRANSMEM 2 22 Helical. {ECO:0000255}. FT TRANSMEM 49 69 Helical. {ECO:0000255}. SQ SEQUENCE 199 AA; 21460 MW; 7E69B539B2F9B8EC CRC64; MTSALLGLQI VLAVLIVVVV LLQKSSSIGL GAYSGSNESL FGAKGPASFM AKLTMFLGLL FVINTIALGY FYNKEYGKSV LDETKTNKEL SPLVPATGTL NPALNPTLNP TLNPLEQAPT NPLMPQQTPN ELPKEPAKTP SVESPKQNEK NEKNDAKENG IKGVEKTKEN AKTPPTTHQK PKTHATQTNA HTNQKKDEK // ID SECY_HELPY Reviewed; 420 AA. AC O25879; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Protein translocase subunit SecY {ECO:0000255|HAMAP-Rule:MF_01465}; GN Name=secY {ECO:0000255|HAMAP-Rule:MF_01465}; GN OrderedLocusNames=HP_1300; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The central subunit of the protein translocation channel CC SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These CC two domains form a lateral gate at the front which open onto the CC bilayer between TMs 2 and 7, and are clamped together by SecE at CC the back. The channel is closed by both a pore ring composed of CC hydrophobic SecY resides and a short helix (helix 2A) on the CC extracellular side of the membrane which forms a plug. The plug CC probably moves laterally to allow the channel to open. The ring CC and the pore may move independently. {ECO:0000255|HAMAP- CC Rule:MF_01465}. CC -!- SUBUNIT: Component of the Sec protein translocase complex. CC Heterotrimer consisting of SecY, SecE and SecG subunits. The CC heterotrimers can form oligomers, although 1 heterotrimer is CC thought to be able to translocate proteins. Interacts with the CC ribosome. Interacts with SecDF, and other proteins may be CC involved. Interacts with SecA. {ECO:0000255|HAMAP-Rule:MF_01465}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01465}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01465}. CC -!- SIMILARITY: Belongs to the SecY/SEC61-alpha family. CC {ECO:0000255|HAMAP-Rule:MF_01465}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08341.1; -; Genomic_DNA. DR PIR; D64682; D64682. DR RefSeq; NP_208092.1; NC_000915.1. DR RefSeq; WP_001030187.1; NC_018939.1. DR ProteinModelPortal; O25879; -. DR DIP; DIP-3770N; -. DR IntAct; O25879; 1. DR MINT; MINT-169922; -. DR STRING; 85962.HP1300; -. DR PaxDb; O25879; -. DR PRIDE; O25879; -. DR EnsemblBacteria; AAD08341; AAD08341; HP_1300. DR GeneID; 899085; -. DR KEGG; heo:C694_06715; -. DR KEGG; hpy:HP1300; -. DR PATRIC; 20593981; VBIHelPyl33062_1361. DR eggNOG; ENOG4105CGG; Bacteria. DR eggNOG; COG0201; LUCA. DR KO; K03076; -. DR OMA; QTYVISQ; -. DR OrthoDB; EOG651SWP; -. DR BioCyc; HPY:HP1300-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP. DR GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP. DR GO; GO:0043952; P:protein transport by the Sec complex; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3370.10; -; 1. DR HAMAP; MF_01465; SecY; 1. DR InterPro; IPR026593; SecY. DR InterPro; IPR002208; SecY/SEC61-alpha. DR InterPro; IPR030659; SecY_CS. DR InterPro; IPR023201; SecY_su_dom. DR PANTHER; PTHR10906; PTHR10906; 1. DR Pfam; PF00344; SecY; 1. DR PIRSF; PIRSF004557; SecY; 1. DR SUPFAM; SSF103491; SSF103491; 1. DR TIGRFAMs; TIGR00967; 3a0501s007; 1. DR PROSITE; PS00755; SECY_1; 1. DR PROSITE; PS00756; SECY_2; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 420 Protein translocase subunit SecY. FT /FTId=PRO_0000131725. FT TRANSMEM 9 29 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 61 81 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 104 124 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 141 161 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 173 193 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 203 223 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 257 277 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 300 320 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 355 375 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 377 397 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01465}. SQ SEQUENCE 420 AA; 45829 MW; 9FD337091D905F9F CRC64; MNKAIASKIL ITLGFLFLYR VLAYIPIPGV DLAAIKAFFD SNSNNALGLF NMFSGNAVSR LSIISLGIMP YITSSIIMEL LSATFPNLAK MKKERDGMQK YMQIVRYLTI LITLIQAVSV SVGLRSISGG ANGAIMIDMQ VFMIVSAFSM LTGTMLLMWI GEQITQRGVG NGISLIIFAG IVSGIPSAIS GTFNLVNTGV INILMLIGIV LIVLATIFAI IYVELAERRI PISYARKVVM QNQNKRIMNY IPIKLNLSGV IPPIFASALL VFPSTILQQA TSNKTLQAVA DFLSPQGYAY NILMFLLIIF FAYFYSSIVF NSKDIADNLR RNGGYIPGLR PGEGTSSFLN SVASKLTLWG SLYLALISTV PWILVKAMGV PFYFGGTAVL IVVQVAIDTM KKIEAQIYMS KYKTLSAVGF // ID SECA_HELPY Reviewed; 865 AA. AC O25475; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 108. DE RecName: Full=Protein translocase subunit SecA {ECO:0000255|HAMAP-Rule:MF_01382}; GN Name=secA {ECO:0000255|HAMAP-Rule:MF_01382}; GN OrderedLocusNames=HP_0786; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the Sec protein translocase complex. Interacts CC with the SecYEG preprotein conducting channel. Has a central role CC in coupling the hydrolysis of ATP to the transfer of proteins into CC and across the cell membrane, serving as an ATP-driven molecular CC motor driving the stepwise translocation of polypeptide chains CC across the membrane. {ECO:0000255|HAMAP-Rule:MF_01382}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01382}; CC Note=May bind 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01382}; CC -!- SUBUNIT: Monomer and homodimer. Part of the essential Sec protein CC translocation apparatus which comprises SecA, SecYEG and auxiliary CC proteins SecDF-YajC and YidC. {ECO:0000255|HAMAP-Rule:MF_01382}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01382}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01382}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_01382}. Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01382}. CC Note=Distribution is 50-50. {ECO:0000255|HAMAP-Rule:MF_01382}. CC -!- SIMILARITY: Belongs to the SecA family. {ECO:0000255|HAMAP- CC Rule:MF_01382}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07830.1; -; Genomic_DNA. DR PIR; B64618; B64618. DR RefSeq; NP_207579.1; NC_000915.1. DR RefSeq; WP_000588147.1; NC_018939.1. DR ProteinModelPortal; O25475; -. DR SMR; O25475; 460-504. DR DIP; DIP-3356N; -. DR IntAct; O25475; 1. DR MINT; MINT-180404; -. DR STRING; 85962.HP0786; -. DR PaxDb; O25475; -. DR PRIDE; O25475; -. DR EnsemblBacteria; AAD07830; AAD07830; HP_0786. DR GeneID; 898905; -. DR KEGG; heo:C694_04030; -. DR KEGG; hpy:HP0786; -. DR PATRIC; 20592859; VBIHelPyl33062_0818. DR eggNOG; ENOG4105CI6; Bacteria. DR eggNOG; COG0653; LUCA. DR KO; K03070; -. DR OMA; IATERHE; -. DR OrthoDB; EOG654P48; -. DR BioCyc; HPY:HP0786-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP. DR GO; GO:0017038; P:protein import; IEA:InterPro. DR GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3060.10; -; 1. DR Gene3D; 3.40.50.300; -; 3. DR Gene3D; 3.90.1440.10; -; 1. DR HAMAP; MF_01382; SecA; 1. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004027; SEC_C_motif. DR InterPro; IPR000185; SecA. DR InterPro; IPR020937; SecA_CS. DR InterPro; IPR011115; SecA_DEAD. DR InterPro; IPR014018; SecA_motor_DEAD. DR InterPro; IPR011130; SecA_preprotein_X-link_dom. DR InterPro; IPR011116; SecA_Wing/Scaffold. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF02810; SEC-C; 1. DR Pfam; PF07517; SecA_DEAD; 1. DR Pfam; PF01043; SecA_PP_bind; 1. DR Pfam; PF07516; SecA_SW; 1. DR PRINTS; PR00906; SECA. DR SMART; SM00957; SecA_DEAD; 1. DR SMART; SM00958; SecA_PP_bind; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR SUPFAM; SSF81767; SSF81767; 1. DR SUPFAM; SSF81886; SSF81886; 2. DR TIGRFAMs; TIGR00963; secA; 1. DR PROSITE; PS01312; SECA; 1. DR PROSITE; PS51196; SECA_MOTOR_DEAD; 1. PE 3: Inferred from homology; KW ATP-binding; Cell inner membrane; Cell membrane; Complete proteome; KW Cytoplasm; Membrane; Metal-binding; Nucleotide-binding; KW Protein transport; Reference proteome; Translocation; Transport; Zinc. FT CHAIN 1 865 Protein translocase subunit SecA. FT /FTId=PRO_0000109587. FT NP_BIND 108 115 ATP. {ECO:0000255|HAMAP-Rule:MF_01382}. FT METAL 841 841 Zinc. {ECO:0000255|HAMAP-Rule:MF_01382}. FT METAL 843 843 Zinc. {ECO:0000255|HAMAP-Rule:MF_01382}. FT METAL 852 852 Zinc. {ECO:0000255|HAMAP-Rule:MF_01382}. FT METAL 853 853 Zinc. {ECO:0000255|HAMAP-Rule:MF_01382}. SQ SEQUENCE 865 AA; 99084 MW; 472D8F86D791A8BD CRC64; MIKAIIGKII GTRNDRWIKQ YKKQVLTINA LEPTYEKMSD DELQNAFEEL KKRVRSTEKD LQEKTLLEVL PESFAITREA SKRILKMCHF DVQLIGGMVL NDGKIAEMKT GEGKTLVATL AVALNALKGE SVYVVTVNDY LAHRDSKEME PLYHFLGYSV GTITASVRDD DERLEIYSKD IVYGTNNEFG FDYLRDNMKY SLEHKVQKSH AFAIVDEVDS ILIDEARTPL IISGPVDRRM ENYNKADEVA KSMQVEIDFT IDEKNRAILI TEEGIKKAEN LFGVDNLYKI ENAALSHHLD QALKANYLFF IDKDYIVANN EVVIVDEFTG RLSEGRRFSE GLHQALEAKE GVSIKEESQT LADITFQNYF RMFSKLAGMT GTAQTEATEF LEIYNLEVVS IPTNLAIKRK DLNDLIYKSE KEKFDAVILK IKELHDKGQP VLVGTASIEK SETLHALLKK ERIPHTVLNA KQHTKEAEII KDAGLKGAVT IATNMAGRGV DIKLTDEIKE LGGLYIIGTE RHESRRIDNQ LRGRSGRQGD PGTSQFYLSL EDNLLRIFGS DRIKGVMEKL GLKDGEHIES KLVTRAVENA QKKVENLHFE SRKHLLEYDD VANEQRKSVY KFRDELLDVN YDISAKIAEN REYALNQIFS KLKAFDHQNL SEEELLGLKN ILKEDFNAHV SLEDLKKASP IENFVAEKLK SDYENKMKVL DSEQRSRIER IVYLQILDNA WREHLYTMDN LKTGINLRGY NQKDPLVEYK KESYNLFLEF IEDIKTEAIK TFSKIQFENE QDSSDAERYL DNFSEEREHE SVTYRHEEAL DEDLNVAMKA FAKTPKRNEP CPCQSGKKYK DCCAKSGPKK GLFAK // ID SECF_HELPY Reviewed; 323 AA. AC O26073; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Protein translocase subunit SecF; GN Name=secF {ECO:0000255|HAMAP-Rule:MF_01464}; GN OrderedLocusNames=HP_1549; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the Sec protein translocase complex. Interacts CC with the SecYEG preprotein conducting channel. SecDF uses the CC proton motive force (PMF) to complete protein translocation after CC the ATP-dependent function of SecA. {ECO:0000255|HAMAP- CC Rule:MF_01464}. CC -!- SUBUNIT: Forms a complex with SecD. Part of the essential Sec CC protein translocation apparatus which comprises SecA, SecYEG and CC auxiliary proteins SecDF-YajC and YidC. {ECO:0000255|HAMAP- CC Rule:MF_01464}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01464}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01464}. CC -!- SIMILARITY: Belongs to the SecD/SecF family. SecF subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01464}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08587.1; -; Genomic_DNA. DR PIR; E64713; E64713. DR RefSeq; NP_208340.1; NC_000915.1. DR RefSeq; WP_000418663.1; NC_018939.1. DR ProteinModelPortal; O26073; -. DR STRING; 85962.HP1549; -. DR PaxDb; O26073; -. DR PRIDE; O26073; -. DR EnsemblBacteria; AAD08587; AAD08587; HP_1549. DR GeneID; 899742; -. DR KEGG; heo:C694_08025; -. DR KEGG; hpy:HP1549; -. DR PATRIC; 20594521; VBIHelPyl33062_1628. DR eggNOG; ENOG4107RAB; Bacteria. DR eggNOG; COG0341; LUCA. DR KO; K03074; -. DR OMA; IDMNLEV; -. DR OrthoDB; EOG676Z5R; -. DR BioCyc; HPY:HP1549-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015450; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; IEA:InterPro. DR GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP. DR GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP. DR GO; GO:0043952; P:protein transport by the Sec complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01464_B; SecF_B; 1. DR InterPro; IPR022813; SecD/SecF_arch_bac. DR InterPro; IPR022645; SecD/SecF_bac. DR InterPro; IPR022646; SecD/SecF_CS. DR InterPro; IPR005665; SecF_bac. DR Pfam; PF07549; Sec_GG; 1. DR Pfam; PF02355; SecD_SecF; 1. DR PRINTS; PR01755; SECFTRNLCASE. DR TIGRFAMs; TIGR00916; 2A0604s01; 1. DR TIGRFAMs; TIGR00966; 3a0501s07; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 323 Protein translocase subunit SecF. FT /FTId=PRO_0000095980. FT TRANSMEM 19 39 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. FT TRANSMEM 138 158 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. FT TRANSMEM 162 182 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. FT TRANSMEM 189 209 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. FT TRANSMEM 244 264 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. FT TRANSMEM 269 289 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01464}. SQ SEQUENCE 323 AA; 36277 MW; EAD9190473F21F59 CRC64; MELFKRTRIL SFMRYSNYGV IVSAILALLA LGLLFFKGFS LGIDFAGGSL VQVRYTQNAP IKEVRDLFEK EARFKGVQVS EFGSKEEILI KFPFVETAEN EDLNAIVANI LKPSGDFEIR KFDTVGPRVG SELKEKGILS LILALIAIMV YVSFRYEWRF ALASVIALVH DVILVASSVI VFKIDMNLEV IAALLTLIGY SINDTIIIFD RIREEMLSQK TKNATQAIDE AISSTLTRTL LTSLTVFFVV LILCVFGSKI IIGFSLPMLI GTIVGTYSSI FIAPKVALLL GFDMDKYYEN ETRKIKKAQE KEKMRRLYES GQV // ID SDHL_HELPY Reviewed; 455 AA. AC P56072; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=L-serine dehydratase; DE Short=SDH; DE EC=4.3.1.17; DE AltName: Full=L-serine deaminase; DE Short=L-SD; GN Name=sdaA; OrderedLocusNames=HP_0132; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: L-serine = pyruvate + NH(3). CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000305}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000305}; CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC -!- SIMILARITY: Belongs to the iron-sulfur dependent L-serine CC dehydratase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07202.1; -; Genomic_DNA. DR PIR; D64536; D64536. DR RefSeq; NP_206932.1; NC_000915.1. DR RefSeq; WP_000135967.1; NC_018939.1. DR ProteinModelPortal; P56072; -. DR DIP; DIP-3172N; -. DR IntAct; P56072; 8. DR MINT; MINT-170814; -. DR STRING; 85962.HP0132; -. DR PaxDb; P56072; -. DR PRIDE; P56072; -. DR EnsemblBacteria; AAD07202; AAD07202; HP_0132. DR GeneID; 900301; -. DR KEGG; heo:C694_00650; -. DR KEGG; hpy:HP0132; -. DR PATRIC; 20591481; VBIHelPyl33062_0140. DR eggNOG; ENOG4105EJQ; Bacteria. DR eggNOG; COG1760; LUCA. DR KO; K01752; -. DR OMA; CQATTQQ; -. DR OrthoDB; EOG64V2GZ; -. DR BioCyc; HPY:HP0132-MONOMER; -. DR UniPathway; UPA00138; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0003941; F:L-serine ammonia-lyase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.1330.90; -; 1. DR InterPro; IPR029009; ASB_dom. DR InterPro; IPR004644; Fe-S_L-Ser_mono. DR InterPro; IPR005130; Ser_deHydtase-like_asu. DR InterPro; IPR005131; Ser_deHydtase_bsu. DR Pfam; PF03313; SDH_alpha; 1. DR Pfam; PF03315; SDH_beta; 1. DR SUPFAM; SSF143548; SSF143548; 1. DR TIGRFAMs; TIGR00720; sda_mono; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Gluconeogenesis; Iron; Iron-sulfur; Lyase; KW Metal-binding; Reference proteome. FT CHAIN 1 455 L-serine dehydratase. FT /FTId=PRO_0000171907. SQ SEQUENCE 455 AA; 49242 MW; 4F5B5067C1DB0DC7 CRC64; MASFSILSIF KIGVGPSSSH TIGPMEAGAR FCESLKGILE QVVRVQITLH GSLALTGKGH LSDEAVLIGL HGIYANELEV TTKKALLHEA LENKVLKLAN QHHIPFDYAK DLIFDNKPLT RHQNALILKA FNSKNEVLKE ETYYSVGGGF VYTEKELDNL SEEDGNESIA YDFSSAKELL ELCQKHQKSI AEIVRLRENA LKNHPDATMV KIYHAMLECY DNGANSKERY LPGSLKVTRL APSIKTRLEK HPTSGKDPLA LIDYISLYAR AIAEENASGG KVVTAPTNGA CAVVPSVLLY AKNHLFENLS QKAINDFLLT SAAIGYLYKK NASLSGAEAG CQAEIGVASS MAAGGLAHLC QATTQQVLIA SEIAMEHHLG LTCDPVGGLV QIPCIERNVL GAIKAISASK LALEDEYKPK VSLDEVIATM YATGKDMNEK YKETSLGGLA KTLKC // ID SECD_HELPY Reviewed; 525 AA. AC O26074; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 21-SEP-2011, sequence version 2. DT 11-NOV-2015, entry version 105. DE RecName: Full=Protein translocase subunit SecD {ECO:0000255|HAMAP-Rule:MF_01463}; GN Name=secD {ECO:0000255|HAMAP-Rule:MF_01463}; GN OrderedLocusNames=HP_1550; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the Sec protein translocase complex. Interacts CC with the SecYEG preprotein conducting channel. SecDF uses the CC proton motive force (PMF) to complete protein translocation after CC the ATP-dependent function of SecA. {ECO:0000255|HAMAP- CC Rule:MF_01463}. CC -!- SUBUNIT: Forms a complex with SecF. Part of the essential Sec CC protein translocation apparatus which comprises SecA, SecYEG and CC auxiliary proteins SecDF-YajC and YidC. {ECO:0000255|HAMAP- CC Rule:MF_01463}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01463}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01463}. CC -!- SIMILARITY: Belongs to the SecD/SecF family. SecD subfamily. CC {ECO:0000255|HAMAP-Rule:MF_01463}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08588.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08588.1; ALT_INIT; Genomic_DNA. DR PIR; F64713; F64713. DR RefSeq; NP_208341.2; NC_000915.1. DR RefSeq; WP_000765381.1; NC_018939.1. DR DIP; DIP-3100N; -. DR IntAct; O26074; 5. DR MINT; MINT-166196; -. DR STRING; 85962.HP1550; -. DR PaxDb; O26074; -. DR PRIDE; O26074; -. DR EnsemblBacteria; AAD08588; AAD08588; HP_1550. DR GeneID; 899741; -. DR KEGG; heo:C694_08030; -. DR KEGG; hpy:HP1550; -. DR PATRIC; 20594523; VBIHelPyl33062_1629. DR eggNOG; ENOG4107QN8; Bacteria. DR eggNOG; COG0342; LUCA. DR KO; K03072; -. DR OrthoDB; EOG6N0HJT; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015450; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; IEA:InterPro. DR GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP. DR GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP. DR GO; GO:0043952; P:protein transport by the Sec complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01463_B; SecD_B; 1. DR InterPro; IPR001036; Acrflvin-R. DR InterPro; IPR005791; SecD. DR InterPro; IPR022813; SecD/SecF_arch_bac. DR InterPro; IPR022645; SecD/SecF_bac. DR Pfam; PF02355; SecD_SecF; 1. DR PRINTS; PR00702; ACRIFLAVINRP. DR TIGRFAMs; TIGR00916; 2A0604s01; 1. DR TIGRFAMs; TIGR01129; secD; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 525 Protein translocase subunit SecD. FT /FTId=PRO_0000095963. FT TRANSMEM 8 28 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. FT TRANSMEM 356 376 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. FT TRANSMEM 379 399 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. FT TRANSMEM 405 425 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. FT TRANSMEM 453 473 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. FT TRANSMEM 478 498 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01463}. SQ SEQUENCE 525 AA; 56577 MW; 57467C1863000C04 CRC64; MKLFNARLIV FIGALLLGVG FSVPSLLETK GPKITLGLDL RGGLNMLLGV QTDEALKNKY LSLASALEYN AKKQNILLKD IKSNLEGISF ELLDEDEAKK LDALLLELQG HSQFEIKKEA GFYSVNLTPL EQEELRKNTI LQVIGIIRNR LDQFGLAEPV VIQQGKEEIS VQLPGIKTLE EERRAKDLIS RSAHLQMMAV DEEHNKDAMK MTDLEAQKLG SVLLSDVEMG GKILLKAIPI LDGEMLTDAK VVYDQNNQPV VSFTLDAQGA KIFGDFSGAN VGKRMAIVLD NKVYSAPVIR ERIGGGSGQI SGNFSVAQAS DLAIALRSGA MSAPIQVLEK RIIGPSLGKD SVKTSIIALV GGFILVMGFM VLYYSMAGVI ACLALVVNLF LIVAVMAIFG ATLTLPGMAG IVLTVGIAVD ANIIINERIR EVLRENEGIA KAIHLGYINA SRAIFDSNIT SLIASVLLYA YGTGAIKGFA LTTGIGILAS IITAIVGTQG IYQALLPKLT QTKSLYFWFG VNKRA // ID SODF_HELPY Reviewed; 213 AA. AC P43312; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1995, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Superoxide dismutase [Fe]; DE EC=1.15.1.1; GN Name=sodB; OrderedLocusNames=HP_0389; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=7515365; DOI=10.1016/0378-1119(94)90614-9; RA Pesci E.C., Pickett C.L.; RT "Genetic organization and enzymatic activity of a superoxide dismutase RT from the microaerophilic human pathogen, Helicobacter pylori."; RL Gene 143:111-116(1994). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE, AND RP CHARACTERIZATION. RC STRAIN=2012; RX PubMed=8225605; RA Spiegelhalder C., Gerstenecker B., Kersten A., Schiltz E., Kist M.; RT "Purification of Helicobacter pylori superoxide dismutase and cloning RT and sequencing of the gene."; RL Infect. Immun. 61:5315-5325(1993). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=151; RX PubMed=10675591; DOI=10.1111/j.1574-6968.2000.tb08965.x; RA Bereswill S., Neuner O., Strobel S., Kist M.; RT "Identification and molecular analysis of superoxide dismutase RT isoforms in Helicobacter pylori."; RL FEMS Microbiol. Lett. 183:241-245(2000). CC -!- FUNCTION: Destroys superoxide anion radicals which are normally CC produced within the cells and which are toxic to biological CC systems. CC -!- CATALYTIC ACTIVITY: 2 superoxide + 2 H(+) = O(2) + H(2)O(2). CC -!- COFACTOR: CC Name=Fe cation; Xref=ChEBI:CHEBI:24875; Evidence={ECO:0000250}; CC Note=Binds 1 Fe cation per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. CC -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; L24801; AAC36885.1; -; Unassigned_DNA. DR EMBL; X72618; CAA51195.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07454.1; -; Genomic_DNA. DR EMBL; AJ132687; CAA10728.1; -; Genomic_DNA. DR PIR; E64568; E64568. DR RefSeq; NP_207187.1; NC_000915.1. DR PDB; 3CEI; X-ray; 2.40 A; A/B=1-212. DR PDBsum; 3CEI; -. DR ProteinModelPortal; P43312; -. DR DIP; DIP-3411N; -. DR IntAct; P43312; 4. DR MINT; MINT-165096; -. DR STRING; 85962.HP0389; -. DR PaxDb; P43312; -. DR EnsemblBacteria; AAD07454; AAD07454; HP_0389. DR GeneID; 900274; -. DR KEGG; hpy:HP0389; -. DR PATRIC; 20592017; VBIHelPyl33062_0402. DR eggNOG; ENOG4105CK4; Bacteria. DR eggNOG; COG0605; LUCA. DR KO; K04564; -. DR OrthoDB; EOG63NMNT; -. DR BioCyc; HPY:HP0389-MONOMER; -. DR EvolutionaryTrace; P43312; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC. DR InterPro; IPR001189; Mn/Fe_SOD. DR InterPro; IPR019833; Mn/Fe_SOD_BS. DR InterPro; IPR019832; Mn/Fe_SOD_C. DR InterPro; IPR019831; Mn/Fe_SOD_N. DR PANTHER; PTHR11404; PTHR11404; 1. DR Pfam; PF02777; Sod_Fe_C; 1. DR Pfam; PF00081; Sod_Fe_N; 1. DR PIRSF; PIRSF000349; SODismutase; 1. DR PRINTS; PR01703; MNSODISMTASE. DR SUPFAM; SSF46609; SSF46609; 1. DR SUPFAM; SSF54719; SSF54719; 1. DR PROSITE; PS00088; SOD_MN; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Direct protein sequencing; Iron; KW Metal-binding; Oxidoreductase; Reference proteome. FT CHAIN 1 213 Superoxide dismutase [Fe]. FT /FTId=PRO_0000159985. FT METAL 26 26 Iron. {ECO:0000250}. FT METAL 73 73 Iron. {ECO:0000250}. FT METAL 156 156 Iron. {ECO:0000250}. FT METAL 160 160 Iron. {ECO:0000250}. FT CONFLICT 104 104 K -> Q (in Ref. 3; AAD07454). FT {ECO:0000305}. FT CONFLICT 112 112 S -> R (in Ref. 2; CAA51195). FT {ECO:0000305}. FT CONFLICT 124 124 A -> V (in Ref. 3; AAD07454). FT {ECO:0000305}. FT CONFLICT 125 125 A -> P (in Ref. 2; CAA51195). FT {ECO:0000305}. FT CONFLICT 179 179 G -> E (in Ref. 3; AAD07454). FT {ECO:0000305}. FT CONFLICT 213 213 A -> LE (in Ref. 2; CAA51195). FT {ECO:0000305}. FT TURN 15 17 {ECO:0000244|PDB:3CEI}. FT HELIX 20 26 {ECO:0000244|PDB:3CEI}. FT TURN 27 29 {ECO:0000244|PDB:3CEI}. FT HELIX 30 42 {ECO:0000244|PDB:3CEI}. FT TURN 46 49 {ECO:0000244|PDB:3CEI}. FT HELIX 52 58 {ECO:0000244|PDB:3CEI}. FT HELIX 61 78 {ECO:0000244|PDB:3CEI}. FT HELIX 89 99 {ECO:0000244|PDB:3CEI}. FT HELIX 102 115 {ECO:0000244|PDB:3CEI}. FT STRAND 118 126 {ECO:0000244|PDB:3CEI}. FT TURN 128 130 {ECO:0000244|PDB:3CEI}. FT STRAND 133 139 {ECO:0000244|PDB:3CEI}. FT HELIX 144 147 {ECO:0000244|PDB:3CEI}. FT STRAND 150 156 {ECO:0000244|PDB:3CEI}. FT HELIX 159 161 {ECO:0000244|PDB:3CEI}. FT HELIX 163 166 {ECO:0000244|PDB:3CEI}. FT HELIX 170 179 {ECO:0000244|PDB:3CEI}. FT HELIX 183 196 {ECO:0000244|PDB:3CEI}. FT HELIX 199 208 {ECO:0000244|PDB:3CEI}. SQ SEQUENCE 213 AA; 24518 MW; 59ABCC4C82C2B1B2 CRC64; MFTLRELPFA KDSMGDFLSP VAFDFHHGKH HQTYVNNLNN LIKGTDFEKS SLFDILTKSS GGVFNNAAQI YNHDFYWDCL SPKATALSDE LKGALEKDFG SLEKFKEDFI KSATTLFGSG WNWAAYNLDT QKIEIIQTSN AQTPVTDKKV PLLVVDVWEH AYYIDHKNAR PVYLEKFYGH INWHFVSQCY EWAKKEGLGS VDYYINELVH KKA // ID SLYD_HELPY Reviewed; 185 AA. AC O25748; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; DE Short=PPIase; DE EC=5.2.1.8; DE AltName: Full=Metallochaperone SlyD; GN Name=slyD; OrderedLocusNames=HP_1123; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Folding helper with both chaperone and peptidyl-prolyl CC cis-trans isomerase (PPIase) activities. Chaperone activity CC prevents aggregation of unfolded or partially folded proteins and CC promotes their correct folding. PPIases catalyze the cis-trans CC isomerization of Xaa-Pro bonds of peptides, which accelerates slow CC steps of protein folding and thus shortens the lifetime of CC intermediates. Both strategies lower the concentration of CC intermediates and increase the productivity and yield of the CC folding reaction (By similarity). {ECO:0000250}. CC -!- FUNCTION: Also involved in hydrogenase metallocenter assembly, CC probably by participating in the nickel insertion step. This CC function in hydrogenase biosynthesis requires chaperone activity CC and the presence of the metal-binding domain, but not PPIase CC activity (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Peptidylproline (omega=180) = peptidylproline CC (omega=0). CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- DOMAIN: The N-terminal region consists of two globular folded CC domains that contain prolyl isomerase and chaperone activities. CC {ECO:0000250}. CC -!- DOMAIN: The C-terminal region binds nickel ions. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FKBP-type PPIase family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 PPIase FKBP-type domain. CC {ECO:0000255|PROSITE-ProRule:PRU00277}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08168.1; -; Genomic_DNA. DR PIR; C64660; C64660. DR RefSeq; NP_207914.1; NC_000915.1. DR RefSeq; WP_001179304.1; NC_018939.1. DR PDB; 2KR7; NMR; -; A=1-151. DR PDBsum; 2KR7; -. DR ProteinModelPortal; O25748; -. DR STRING; 85962.HP1123; -. DR PaxDb; O25748; -. DR PRIDE; O25748; -. DR EnsemblBacteria; AAD08168; AAD08168; HP_1123. DR GeneID; 899660; -. DR KEGG; heo:C694_05800; -. DR KEGG; hpy:HP1123; -. DR PATRIC; 20593591; VBIHelPyl33062_1175. DR eggNOG; ENOG4108YZY; Bacteria. DR eggNOG; COG1047; LUCA. DR KO; K03775; -. DR OMA; TEDHQTI; -. DR OrthoDB; EOG6Q8J79; -. DR BioCyc; HPY:HP1123-MONOMER; -. DR EvolutionaryTrace; O25748; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR InterPro; IPR023566; PPIase_FKBP. DR InterPro; IPR001179; PPIase_FKBP_dom. DR PANTHER; PTHR10516; PTHR10516; 2. DR Pfam; PF00254; FKBP_C; 1. DR PROSITE; PS50059; FKBP_PPIASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Chaperone; Complete proteome; Cytoplasm; Isomerase; KW Metal-binding; Nickel; Reference proteome; Rotamase. FT CHAIN 1 185 FKBP-type peptidyl-prolyl cis-trans FT isomerase SlyD. FT /FTId=PRO_0000075359. FT DOMAIN 1 99 PPIase FKBP-type. {ECO:0000255|PROSITE- FT ProRule:PRU00277}. FT REGION 1 74 PPIase first part. {ECO:0000250}. FT REGION 81 125 IF-chaperone. {ECO:0000250}. FT REGION 134 156 PPIase second part. {ECO:0000250}. FT REGION 157 185 Metal-binding. {ECO:0000250}. FT COMPBIAS 158 185 Gly-rich. FT STRAND 12 23 {ECO:0000244|PDB:2KR7}. FT STRAND 27 31 {ECO:0000244|PDB:2KR7}. FT TURN 32 34 {ECO:0000244|PDB:2KR7}. FT STRAND 37 40 {ECO:0000244|PDB:2KR7}. FT HELIX 48 54 {ECO:0000244|PDB:2KR7}. FT STRAND 62 67 {ECO:0000244|PDB:2KR7}. FT TURN 69 73 {ECO:0000244|PDB:2KR7}. FT STRAND 80 85 {ECO:0000244|PDB:2KR7}. FT HELIX 86 89 {ECO:0000244|PDB:2KR7}. FT STRAND 99 104 {ECO:0000244|PDB:2KR7}. FT TURN 105 107 {ECO:0000244|PDB:2KR7}. FT STRAND 108 117 {ECO:0000244|PDB:2KR7}. FT STRAND 119 126 {ECO:0000244|PDB:2KR7}. FT STRAND 135 145 {ECO:0000244|PDB:2KR7}. SQ SEQUENCE 185 AA; 19997 MW; 26D0D84D771997FF CRC64; MQNHDLESIK QAALIEYEVR EQGSSIVLDS NISKEPLEFI IGTNQIIAGL EKAVLKAQIG EWEEVVIAPE EAYGVYESSY LQEVPRDQFE GIELEKGMSV FGQTEDNQTI QAIIKDFSAT HVMVDYNHPL AGKTLAFRFK VLGFREVSEE EILASHHGGG TGCCGGHGGH GGKKGGGCGC SCSHG // ID SRP54_HELPY Reviewed; 448 AA. AC P56005; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 101. DE RecName: Full=Signal recognition particle protein {ECO:0000255|HAMAP-Rule:MF_00306}; DE AltName: Full=Fifty-four homolog {ECO:0000255|HAMAP-Rule:MF_00306}; GN Name=ffh {ECO:0000255|HAMAP-Rule:MF_00306}; OrderedLocusNames=HP_1152; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in targeting and insertion of nascent membrane CC proteins into the cytoplasmic membrane. Binds to the hydrophobic CC signal sequence of the ribosome-nascent chain (RNC) as it emerges CC from the ribosomes. The SRP-RNC complex is then targeted to the CC cytoplasmic membrane where it interacts with the SRP receptor CC FtsY. Interaction with FtsY leads to the transfer of the RNC CC complex to the Sec translocase for insertion into the membrane, CC the hydrolysis of GTP by both Ffh and FtsY, and the dissociation CC of the SRP-FtsY complex into the individual components. CC {ECO:0000255|HAMAP-Rule:MF_00306}. CC -!- SUBUNIT: Part of the signal recognition particle protein CC translocation system, which is composed of SRP and FtsY. SRP is a CC ribonucleoprotein composed of Ffh and a 4.5S RNA molecule. CC {ECO:0000255|HAMAP-Rule:MF_00306}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00306}. CC Note=The SRP-RNC complex is targeted to the cytoplasmic membrane. CC {ECO:0000255|HAMAP-Rule:MF_00306}. CC -!- DOMAIN: Composed of three domains: the N-terminal N domain, which CC is responsible for interactions with the ribosome, the central G CC domain, which binds GTP, and the C-terminal M domain, which binds CC the RNA and the signal sequence of the RNC. {ECO:0000255|HAMAP- CC Rule:MF_00306}. CC -!- SIMILARITY: Belongs to the GTP-binding SRP family. SRP54 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00306}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08194.1; -; Genomic_DNA. DR PIR; H64663; H64663. DR RefSeq; NP_207943.1; NC_000915.1. DR RefSeq; WP_000484750.1; NC_018939.1. DR ProteinModelPortal; P56005; -. DR STRING; 85962.HP1152; -. DR PaxDb; P56005; -. DR PRIDE; P56005; -. DR EnsemblBacteria; AAD08194; AAD08194; HP_1152. DR GeneID; 899912; -. DR KEGG; heo:C694_05950; -. DR KEGG; hpy:HP1152; -. DR PATRIC; 20593655; VBIHelPyl33062_1206. DR eggNOG; ENOG4105CB9; Bacteria. DR eggNOG; COG0541; LUCA. DR KO; K03106; -. DR OMA; MLPGMGQ; -. DR OrthoDB; EOG62K1ZH; -. DR BioCyc; HPY:HP1152-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW. DR GO; GO:0008312; F:7S RNA binding; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 1.10.260.30; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00306; SRP54; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR013822; Signal_recog_particl_SRP54_hlx. DR InterPro; IPR004125; Signal_recog_particle_SRP54_M. DR InterPro; IPR022941; SRP54. DR InterPro; IPR000897; SRP54_GTPase_dom. DR InterPro; IPR004780; SRP_Ffh. DR PANTHER; PTHR11564:SF7; PTHR11564:SF7; 1. DR Pfam; PF00448; SRP54; 1. DR Pfam; PF02881; SRP54_N; 1. DR Pfam; PF02978; SRP_SPB; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00962; SRP54; 1. DR SMART; SM00963; SRP54_N; 1. DR SUPFAM; SSF47364; SSF47364; 1. DR SUPFAM; SSF47446; SSF47446; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00959; ffh; 1. DR PROSITE; PS00300; SRP54; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Nucleotide-binding; KW Reference proteome; Ribonucleoprotein; RNA-binding; KW Signal recognition particle. FT CHAIN 1 448 Signal recognition particle protein. FT /FTId=PRO_0000101157. FT NP_BIND 101 108 GTP. {ECO:0000255|HAMAP-Rule:MF_00306}. FT NP_BIND 182 186 GTP. {ECO:0000255|HAMAP-Rule:MF_00306}. FT NP_BIND 240 243 GTP. {ECO:0000255|HAMAP-Rule:MF_00306}. SQ SEQUENCE 448 AA; 49175 MW; 9874CA5A6502CB7D CRC64; MFQALSDGFK NALNKIRFQD DEKALDRALD ELKKTLLKND VHHKVARELL KKVESQTKLN GIGKQQFLDA LEKSLLEILS AKGSSGFTFA QTPPTVVLMA GLQGSGKTTT TAKLAHYLKT KNKKVLLCAC DLQRLAAVEQ LKVLGEQVGV EVFYEENKSV KEIASNALKR AKEAQFDVLL VDSAGRLAID KELMQELKEV KEILNPHEVL YVADALSGQD GVKSANTFNE EIGVSGVVLS KFDSDSKGGI ALGITYQLGL PLRFIGSGEK IPDLDVFVPE RIVGRLMGAG DIVSLAEKTA SVLNPNEAKD LSKKLKKGQF TFNDFLNQIE KVKKLGSMSS LISMIPGLGN MASALKDTDL ESSLEVKKIK AMVNSMTKKE QENPEILNGS RRKRIALGSG LEVSEINRII KRFDQASKMA KRLTNKKGIS DLMNLMSQAK NQTPPKMR // ID SPEE_HELPY Reviewed; 262 AA. AC O25503; DT 15-MAR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Polyamine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000303|PubMed:16009566}; DE AltName: Full=Putrescine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198}; DE Short=PAPT {ECO:0000255|HAMAP-Rule:MF_00198}; DE AltName: Full=Spermidine synthase {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000303|PubMed:16009566}; DE Short=SPDS {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000303|PubMed:16009566}; DE Short=SPDSY {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000303|PubMed:16009566}; DE EC=2.5.1.16 {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000269|PubMed:16009566}; GN Name=speE {ECO:0000255|HAMAP-Rule:MF_00198}; GN OrderedLocusNames=HP_0832; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CRYSTALLIZATION, AND SUBUNIT. RC STRAIN=ATCC 700392 / 26695; RX PubMed=15502329; DOI=10.1107/S0907444904021985; RA Lu P.-K., Chien S.-Y., Tsai J.-Y., Fong C.-T., Lee M.-J., Huang H., RA Sun Y.-J.; RT "Crystallization and preliminary X-ray diffraction analysis of RT spermidine synthase from Helicobacter pylori."; RL Acta Crystallogr. D 60:2067-2069(2004). RN [3] RP FUNCTION, CATALYTIC ACTIVITY, MASS SPECTROMETRY, ENZYME REGULATION, RP SUBUNIT, AND SUBSTRATE SPECIFICITY. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16009566; DOI=10.1016/j.pep.2005.04.017; RA Lee M.-J., Huang C.-Y., Sun Y.-J., Huang H.; RT "Cloning and characterization of spermidine synthase and its RT implication in polyamine biosynthesis in Helicobacter pylori strain RT 26695."; RL Protein Expr. Purif. 43:140-148(2005). RN [4] RP X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), AND SUBUNIT. RX PubMed=17357156; DOI=10.1002/prot.21315; RA Lu P.K., Tsai J.Y., Chien H.Y., Huang H., Chu C.H., Sun Y.J.; RT "Crystal structure of Helicobacter pylori spermidine synthase: a RT Rossmann-like fold with a distinct active site."; RL Proteins 67:743-754(2007). CC -!- FUNCTION: Involved in the cell growth and proliferation. Catalyzes CC the irreversible transfer of a propylamine group from the amino CC donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine CC (1,4-diaminobutane) to yield spermidine. Spermidine can not be CC used as an aminopropyl acceptor. {ECO:0000269|PubMed:16009566}. CC -!- CATALYTIC ACTIVITY: S-adenosyl 3-(methylthio)propylamine + CC putrescine = 5'-S-methyl-5'-thioadenosine + spermidine. CC {ECO:0000255|HAMAP-Rule:MF_00198, ECO:0000269|PubMed:16009566}. CC -!- ENZYME REGULATION: Inhibited by methylglyoxal CC bis(cyclopentylamidinohydrazone)(MGBCP). CC {ECO:0000269|PubMed:16009566}. CC -!- PATHWAY: Amine and polyamine biosynthesis; spermidine CC biosynthesis; spermidine from putrescine: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_00198}. CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:15502329, CC ECO:0000269|PubMed:16009566, ECO:0000269|PubMed:17357156}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00198}. CC -!- MASS SPECTROMETRY: Mass=31945; Method=Electrospray; Range=1-262; CC Evidence={ECO:0000269|PubMed:16009566}; CC -!- SIMILARITY: Belongs to the spermidine/spermine synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00198}. CC -!- SIMILARITY: Contains 1 PABS (polyamine biosynthesis) domain. CC {ECO:0000255|HAMAP-Rule:MF_00198}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07882.1; -; Genomic_DNA. DR PIR; H64623; H64623. DR RefSeq; NP_207625.1; NC_000915.1. DR RefSeq; WP_000265099.1; NC_018939.1. DR PDB; 2CMG; X-ray; 2.00 A; A/B=1-262. DR PDB; 2CMH; X-ray; 2.30 A; A/B/C=1-262. DR PDBsum; 2CMG; -. DR PDBsum; 2CMH; -. DR ProteinModelPortal; O25503; -. DR SMR; O25503; 1-262. DR STRING; 85962.HP0832; -. DR PaxDb; O25503; -. DR PRIDE; O25503; -. DR EnsemblBacteria; AAD07882; AAD07882; HP_0832. DR GeneID; 899365; -. DR KEGG; heo:C694_04265; -. DR KEGG; hpy:HP0832; -. DR PATRIC; 20592955; VBIHelPyl33062_0866. DR eggNOG; ENOG41084QV; Bacteria. DR eggNOG; COG0421; LUCA. DR KO; K00797; -. DR OMA; ISFFPHF; -. DR OrthoDB; EOG644ZMH; -. DR BioCyc; HPY:HP0832-MONOMER; -. DR BRENDA; 2.5.1.16; 2604. DR UniPathway; UPA00248; UER00314. DR EvolutionaryTrace; O25503; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004766; F:spermidine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0006596; P:polyamine biosynthetic process; IDA:UniProtKB. DR GO; GO:0008295; P:spermidine biosynthetic process; IDA:UniProtKB. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00198; Spermidine_synth; 1. DR InterPro; IPR030374; PABS. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR001045; Spermi_synthase. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51006; PABS_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Polyamine biosynthesis; KW Reference proteome; Spermidine biosynthesis; Transferase. FT CHAIN 1 262 Polyamine aminopropyltransferase. FT /FTId=PRO_0000156483. FT DOMAIN 1 249 PABS. {ECO:0000255|HAMAP-Rule:MF_00198}. FT ACT_SITE 155 155 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00198}. FT BINDING 6 6 Polyamine. {ECO:0000255|HAMAP- FT Rule:MF_00198}. FT BINDING 29 29 S-adenosylmethioninamine. FT {ECO:0000255|HAMAP-Rule:MF_00198}. FT BINDING 83 83 Polyamine. {ECO:0000255|HAMAP- FT Rule:MF_00198}. FT STRAND 2 8 {ECO:0000244|PDB:2CMG}. FT STRAND 11 16 {ECO:0000244|PDB:2CMG}. FT STRAND 18 25 {ECO:0000244|PDB:2CMG}. FT STRAND 30 36 {ECO:0000244|PDB:2CMG}. FT TURN 37 39 {ECO:0000244|PDB:2CMG}. FT STRAND 40 45 {ECO:0000244|PDB:2CMG}. FT STRAND 48 51 {ECO:0000244|PDB:2CMG}. FT HELIX 52 54 {ECO:0000244|PDB:2CMG}. FT HELIX 56 67 {ECO:0000244|PDB:2CMG}. FT STRAND 75 81 {ECO:0000244|PDB:2CMG}. FT HELIX 84 90 {ECO:0000244|PDB:2CMG}. FT STRAND 96 100 {ECO:0000244|PDB:2CMG}. FT HELIX 104 107 {ECO:0000244|PDB:2CMG}. FT HELIX 108 110 {ECO:0000244|PDB:2CMG}. FT TURN 111 113 {ECO:0000244|PDB:2CMG}. FT HELIX 117 121 {ECO:0000244|PDB:2CMG}. FT STRAND 126 131 {ECO:0000244|PDB:2CMG}. FT HELIX 132 134 {ECO:0000244|PDB:2CMG}. FT STRAND 140 147 {ECO:0000244|PDB:2CMG}. FT HELIX 151 158 {ECO:0000244|PDB:2CMG}. FT STRAND 161 172 {ECO:0000244|PDB:2CMG}. FT TURN 174 176 {ECO:0000244|PDB:2CMG}. FT HELIX 178 189 {ECO:0000244|PDB:2CMG}. FT STRAND 193 198 {ECO:0000244|PDB:2CMG}. FT STRAND 208 216 {ECO:0000244|PDB:2CMG}. FT TURN 219 222 {ECO:0000244|PDB:2CMG}. FT HELIX 225 228 {ECO:0000244|PDB:2CMG}. FT HELIX 239 244 {ECO:0000244|PDB:2CMG}. FT HELIX 250 255 {ECO:0000244|PDB:2CMG}. FT HELIX 256 258 {ECO:0000244|PDB:2CMG}. SQ SEQUENCE 262 AA; 30539 MW; FC368C83B7749C36 CRC64; MWITQEITPY LRKEYTIEAK LLDVRSEHNI LEIFKSKDFG EIAMLNRQLL FKNFLHIESE LLAHMGGCTK KELKEVLIVD GFDLELAHQL FKYDTHIDFV QADEKILDSF ISFFPHFHEV KNNKNFTHAK QLLDLDIKKY DLIFCLQEPD IHRIDGLKRM LKEDGVFISV AKHPLLEHVS MQNALKNMGG VFSVAMPFVA PLRILSNKGY IYASFKTHPL KDLMTPKIEA LTSVRYYNED IHRAAFALPK NLQEVFKDNI KS // ID SOTB_HELPY Reviewed; 391 AA. AC O25797; DT 23-JAN-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Probable sugar efflux transporter {ECO:0000255|HAMAP-Rule:MF_00517}; GN Name=sotB {ECO:0000255|HAMAP-Rule:MF_00517}; GN OrderedLocusNames=HP_1185; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the efflux of sugars. The physiological role CC may be the reduction of the intracellular concentration of toxic CC sugars or sugar metabolites. {ECO:0000255|HAMAP-Rule:MF_00517}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00517}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00517}. CC -!- SIMILARITY: Belongs to the major facilitator superfamily. SotB CC (TC 2.A.1.2) family. {ECO:0000255|HAMAP-Rule:MF_00517}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08231.1; -; Genomic_DNA. DR PIR; A64668; A64668. DR RefSeq; NP_207976.1; NC_000915.1. DR RefSeq; WP_000973595.1; NC_018939.1. DR ProteinModelPortal; O25797; -. DR DIP; DIP-3477N; -. DR IntAct; O25797; 1. DR MINT; MINT-185868; -. DR STRING; 85962.HP1185; -. DR PaxDb; O25797; -. DR PRIDE; O25797; -. DR EnsemblBacteria; AAD08231; AAD08231; HP_1185. DR GeneID; 899947; -. DR KEGG; heo:C694_06130; -. DR KEGG; hpy:HP1185; -. DR PATRIC; 20593725; VBIHelPyl33062_1240. DR eggNOG; ENOG4105F27; Bacteria. DR eggNOG; COG2814; LUCA. DR KO; K03445; -. DR KO; K08159; -. DR OMA; ITLYAWL; -. DR OrthoDB; EOG6TJ7VJ; -. DR BioCyc; HPY:HP1185-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015144; F:carbohydrate transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00517; MFS_SotB; 1. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR InterPro; IPR023495; Sugar_effux_transptr_put. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Sugar transport; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 391 Probable sugar efflux transporter. FT /FTId=PRO_0000209328. FT TRANSMEM 16 36 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 51 71 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 82 102 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 110 130 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 138 158 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 170 190 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 210 230 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 247 267 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 277 297 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 300 320 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 338 358 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. FT TRANSMEM 361 381 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00517}. SQ SEQUENCE 391 AA; 43110 MW; 5F6E163019FBD6B5 CRC64; MMITKQSYQK FALMRVFVFS LSAFIFNTTE FVPVALLSDI AKSFEMESAT VGLMITAYAW VVSLGSLPLM LLSAKIERKR LLLFLFALFI LSHILSALAW NFWVLLLSRM GIAFAHSIFW SITASLVIRV APRNKKQQAL GLLALGSSLA MILGLPLGRI IGQILDWRST FGVIGGVATL IALLMWKLLP HLPSRNAGTL ASVPVLMKRP LLMGIYLLVI MVISGHFTTY SYIEPFIIQI SQFSPDITTL MLFVFGLAGV VGSFLFGRLY AKNSRKFIAF AMVLVICPQL LLFVFKNLEW VVFLQIFLWG IGITSLGISL QMRVLQLAPD ATDVASAIYS GSYNVGIGSG ALFGSIVIHQ LGLGYIGFVG GALGLLALFW LRFITIKFKK T // ID SSB_HELPY Reviewed; 179 AA. AC O25841; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984}; DE Short=SSB {ECO:0000255|HAMAP-Rule:MF_00984}; GN Name=ssb; OrderedLocusNames=HP_1245; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Plays an important role in DNA replication, CC recombination and repair. Binds to ssDNA and to an array of CC partner proteins to recruit them to their sites of action during CC DNA metabolism. {ECO:0000255|HAMAP-Rule:MF_00984}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_00984}. CC -!- INTERACTION: CC O25365:HP_0650; NbExp=3; IntAct=EBI-527972, EBI-527960; CC -!- SIMILARITY: Contains 1 SSB domain. {ECO:0000255|HAMAP- CC Rule:MF_00984}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08291.1; -; Genomic_DNA. DR PIR; E64675; E64675. DR RefSeq; NP_208037.1; NC_000915.1. DR RefSeq; WP_000482414.1; NC_018939.1. DR PDB; 2VW9; X-ray; 2.30 A; A/B=1-134. DR PDBsum; 2VW9; -. DR ProteinModelPortal; O25841; -. DR DIP; DIP-3468N; -. DR IntAct; O25841; 7. DR MINT; MINT-170697; -. DR STRING; 85962.HP1245; -. DR PaxDb; O25841; -. DR PRIDE; O25841; -. DR DNASU; 900340; -. DR EnsemblBacteria; AAD08291; AAD08291; HP_1245. DR GeneID; 900340; -. DR KEGG; heo:C694_06435; -. DR KEGG; hpy:HP1245; -. DR PATRIC; 20593867; VBIHelPyl33062_1304. DR eggNOG; ENOG4108UUM; Bacteria. DR eggNOG; COG0629; LUCA. DR KO; K03111; -. DR OMA; NNAYPAN; -. DR OrthoDB; EOG6M9F32; -. DR BioCyc; HPY:HP1245-MONOMER; -. DR EvolutionaryTrace; O25841; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003697; F:single-stranded DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 2. DR HAMAP; MF_00984; SSB; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000424; Primosome_PriB/ssb. DR InterPro; IPR011344; ssDNA-bd. DR PANTHER; PTHR10302; PTHR10302; 1. DR Pfam; PF00436; SSB; 1. DR PIRSF; PIRSF002070; SSB; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00621; ssb; 1. DR PROSITE; PS50935; SSB; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA damage; DNA recombination; KW DNA repair; DNA replication; DNA-binding; Reference proteome. FT CHAIN 1 179 Single-stranded DNA-binding protein. FT /FTId=PRO_0000096050. FT DOMAIN 1 106 SSB. {ECO:0000255|HAMAP-Rule:MF_00984}. FT MOTIF 174 179 Important for interaction with partner FT proteins. {ECO:0000255|HAMAP- FT Rule:MF_00984}. FT STRAND 5 13 {ECO:0000244|PDB:2VW9}. FT STRAND 16 19 {ECO:0000244|PDB:2VW9}. FT STRAND 25 38 {ECO:0000244|PDB:2VW9}. FT STRAND 40 42 {ECO:0000244|PDB:2VW9}. FT STRAND 44 56 {ECO:0000244|PDB:2VW9}. FT HELIX 57 66 {ECO:0000244|PDB:2VW9}. FT STRAND 72 85 {ECO:0000244|PDB:2VW9}. FT STRAND 91 104 {ECO:0000244|PDB:2VW9}. SQ SEQUENCE 179 AA; 20043 MW; 615C301DBE7316FF CRC64; MFNKVIMVGR LTRNVELKYL PSGSAAATIG LATSRRFKKQ DGTLGEEVCF IDARLFGRTA EIANQYLSKG SSVLIEGRLT YESWMDQTGK KNSRHTITAD SLQFMDKKSD NPQANAMQDS IMHENSNNAY PANHNAPSQD PFNQAYAQNA YAKENLQAQP SKYQNSVPEI NIDEEEIPF // ID SSRP_HELPY Reviewed; 152 AA. AC O25985; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=SsrA-binding protein {ECO:0000255|HAMAP-Rule:MF_00023}; DE AltName: Full=Small protein B {ECO:0000255|HAMAP-Rule:MF_00023}; GN Name=smpB {ECO:0000255|HAMAP-Rule:MF_00023}; GN OrderedLocusNames=HP_1444; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP INDUCTION BY ACID STRESS. RX PubMed=15228539; DOI=10.1111/j.1365-2958.2004.04137.x; RA Bury-Mone S., Thiberge J.M., Contreras M., Maitournam A., Labigne A., RA De Reuse H.; RT "Responsiveness to acidity via metal ion regulators mediates virulence RT in the gastric pathogen Helicobacter pylori."; RL Mol. Microbiol. 53:623-638(2004). RN [3] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=ATCC 700392 / 26695, N6, and X47-2AL; RX PubMed=19043582; DOI=10.1371/journal.pone.0003810; RA Thibonnier M., Thiberge J.M., De Reuse H.; RT "Trans-translation in Helicobacter pylori: essentiality of ribosome RT rescue and requirement of protein tagging for stress resistance and RT competence."; RL PLoS ONE 3:E3810-E3810(2008). CC -!- FUNCTION: Required for rescue of stalled ribosomes mediated by CC trans-translation. Binds to transfer-messenger RNA (tmRNA), CC required for stable association of tmRNA with ribosomes CC (Probable). tmRNA and SmpB together mimic tRNA shape, replacing CC the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA CC gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a CC 'tag peptide', a short internal open reading frame. During trans- CC translation Ala-aminoacylated tmRNA acts like a tRNA, entering the CC A-site of stalled ribosomes, displacing the stalled mRNA. The CC ribosome then switches to translate the ORF on the tmRNA; the CC nascent peptide is terminated with the 'tag peptide' encoded by CC the tmRNA and targeted for degradation. The ribosome is freed to CC recommence translation, which seems to be the essential function CC of trans-translation (PubMed:19043582). {ECO:0000255|HAMAP- CC Rule:MF_00023, ECO:0000269|PubMed:19043582}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00023}. CC Note=The tmRNA-SmpB complex associates with stalled 70S ribosomes. CC {ECO:0000255|HAMAP-Rule:MF_00023}. CC -!- INDUCTION: By growth at pH 5.0 in exponential phase. CC {ECO:0000269|PubMed:15228539}. CC -!- DISRUPTION PHENOTYPE: Essential, it cannot be deleted. Depletion CC experiments show loss of growth after 12 hours, cells remain CC viable for a further 12 hours before they can no longer be rescued CC by induction of smpB. Similarly, the gene for tmRNA (ssrA) cannot CC be deleted; mutations in the tmRNA show that it is the ribosome CC rescue function and not protein tagging and subsequent degradation CC that is essential for viability. Mutant tmRNAs that affect protein CC tagging are however more susceptible to antibiotic stress and less CC naturally competent for DNA transformation. CC {ECO:0000269|PubMed:19043582}. CC -!- SIMILARITY: Belongs to the SmpB family. {ECO:0000255|HAMAP- CC Rule:MF_00023}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08482.1; -; Genomic_DNA. DR PIR; D64700; D64700. DR RefSeq; NP_208235.1; NC_000915.1. DR RefSeq; WP_000766480.1; NC_018939.1. DR ProteinModelPortal; O25985; -. DR DIP; DIP-3736N; -. DR IntAct; O25985; 10. DR MINT; MINT-160699; -. DR STRING; 85962.HP1444; -. DR PaxDb; O25985; -. DR PRIDE; O25985; -. DR EnsemblBacteria; AAD08482; AAD08482; HP_1444. DR GeneID; 899850; -. DR KEGG; heo:C694_07480; -. DR KEGG; hpy:HP1444; -. DR PATRIC; 20594295; VBIHelPyl33062_1516. DR eggNOG; ENOG4108UH4; Bacteria. DR eggNOG; COG0691; LUCA. DR KO; K03664; -. DR OMA; FLLNAHI; -. DR OrthoDB; EOG6HXJ9P; -. DR BioCyc; HPY:HP1444-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070929; P:trans-translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.280.10; -; 1. DR HAMAP; MF_00023; SmpB; 1. DR InterPro; IPR023620; SmpB. DR InterPro; IPR000037; SsrA-bd_prot. DR InterPro; IPR020081; SsrA-bd_prot_CS. DR Pfam; PF01668; SmpB; 1. DR ProDom; PD004488; SmpB; 1. DR SUPFAM; SSF74982; SSF74982; 1. DR TIGRFAMs; TIGR00086; smpB; 1. DR PROSITE; PS01317; SSRP; 1. PE 2: Evidence at transcript level; KW Complete proteome; Cytoplasm; Reference proteome; RNA-binding; KW Stress response. FT CHAIN 1 152 SsrA-binding protein. FT /FTId=PRO_0000102960. SQ SEQUENCE 152 AA; 17824 MW; 2CD90E775CE6C360 CRC64; MKLIASNKKA YFDYEILETL EAGLALLGSE VKALRQTRVN LKDNFVKIIK GEAFLFGVHI SYLDTIHAYY KPNERRERKL LLHKKQLLKW QIEASKERLS IVGLKLYFNQ RNRAKIQIAL VKGKRLHDKR QSLKEKALNK EILADLKHHF KG // ID SURE_HELPY Reviewed; 267 AA. AC O25584; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; DE EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060}; DE AltName: Full=Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; GN Name=surE {ECO:0000255|HAMAP-Rule:MF_00060}; GN OrderedLocusNames=HP_0930; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Nucleotidase that shows phosphatase activity on CC nucleoside 5'-monophosphates. {ECO:0000255|HAMAP-Rule:MF_00060}. CC -!- CATALYTIC ACTIVITY: A 5'-ribonucleotide + H(2)O = a ribonucleoside CC + phosphate. {ECO:0000255|HAMAP-Rule:MF_00060}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00060}; CC Note=Binds 1 divalent metal cation per subunit. CC {ECO:0000255|HAMAP-Rule:MF_00060}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00060}. CC -!- SIMILARITY: Belongs to the SurE nucleotidase family. CC {ECO:0000255|HAMAP-Rule:MF_00060}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07975.1; -; Genomic_DNA. DR PIR; B64636; B64636. DR RefSeq; NP_207722.1; NC_000915.1. DR RefSeq; WP_000722451.1; NC_018939.1. DR ProteinModelPortal; O25584; -. DR STRING; 85962.HP0930; -. DR PaxDb; O25584; -. DR PRIDE; O25584; -. DR EnsemblBacteria; AAD07975; AAD07975; HP_0930. DR GeneID; 899459; -. DR KEGG; heo:C694_04785; -. DR KEGG; hpy:HP0930; -. DR PATRIC; 20593161; VBIHelPyl33062_0966. DR eggNOG; ENOG4105CV2; Bacteria. DR eggNOG; COG0496; LUCA. DR KO; K03787; -. DR OMA; NLNIPPC; -. DR OrthoDB; EOG68WR45; -. DR BioCyc; HPY:HP0930-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008253; F:5'-nucleotidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.1210.10; -; 1. DR HAMAP; MF_00060; SurE; 1. DR InterPro; IPR030048; SurE. DR InterPro; IPR002828; SurE-like_Pase/nucleotidase. DR Pfam; PF01975; SurE; 1. DR SUPFAM; SSF64167; SSF64167; 1. DR TIGRFAMs; TIGR00087; surE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Hydrolase; Metal-binding; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 267 5'-nucleotidase SurE. FT /FTId=PRO_0000111817. FT METAL 9 9 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00060}. FT METAL 10 10 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00060}. FT METAL 40 40 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00060}. FT METAL 97 97 Divalent metal cation. FT {ECO:0000255|HAMAP-Rule:MF_00060}. SQ SEQUENCE 267 AA; 30024 MW; 2477244D1F780D62 CRC64; MKKILLTNDD GYHAKGIKAL EQALEEMAEI YVVAPKHEKS ACSQCITITA PLRAEKIKGK EGRHYRIDDG TPSDCVYLAI NELFKHVCFD LVISGINLGS NMGEDTIYSG TVAGAIEGTI QGVPSIAISQ ILSNKNKNTP LSFDLAQKII QDLVQNIFTK GYPLKGRKLL NVNVPNCSLQ EYQGERITPK GYRLYKKEVH KRTDPKNESY FWLGLHPLEW QKRENEDRLS DFDAIASNHA SITPLNLDLT SYDDLKSLES WHEGMLK // ID SYE2_HELPY Reviewed; 439 AA. AC O25360; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=GlutamylGlutaminyl-tRNA synthetase; DE Short=GluGlnRS; DE EC=6.1.1.-; DE AltName: Full=Glutamate--tRNA ligase 2; DE Short=GluRS 2; DE AltName: Full=Glutamyl-tRNA synthetase 2; GN Name=gltX2; OrderedLocusNames=HP_0643; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION. RC STRAIN=ATCC 700392 / 26695; RX PubMed=13679580; DOI=10.1073/pnas.1932482100; RA Skouloubris S., Ribas de Pouplana L., de Reuse H., Hendrickson T.L.; RT "A noncognate aminoacyl-tRNA synthetase that may resolve a missing RT link in protein evolution."; RL Proc. Natl. Acad. Sci. U.S.A. 100:11297-11302(2003). RN [3] RP FUNCTION. RC STRAIN=ATCC 700392 / 26695; RX PubMed=14615592; DOI=10.1073/pnas.1936123100; RA Salazar J.C., Ahel I., Orellana O., Tumbula-Hansen D., Krieger R., RA Daniels L., Soell D.; RT "Coevolution of an aminoacyl-tRNA synthetase with its tRNA RT substrates."; RL Proc. Natl. Acad. Sci. U.S.A. 100:13863-13868(2003). CC -!- FUNCTION: Aminoacylates tRNA(Gln) with glutamate. Does not CC aminoacylate tRNA(Glu). {ECO:0000269|PubMed:13679580, CC ECO:0000269|PubMed:14615592}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamate + tRNA(Gln) = AMP + CC diphosphate + L-glutamyl-tRNA(Gln). CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07704.1; -; Genomic_DNA. DR PIR; C64600; C64600. DR RefSeq; NP_207437.1; NC_000915.1. DR RefSeq; WP_000943321.1; NC_000915.1. DR ProteinModelPortal; O25360; -. DR DIP; DIP-3622N; -. DR IntAct; O25360; 2. DR MINT; MINT-168508; -. DR STRING; 85962.HP0643; -. DR PaxDb; O25360; -. DR PRIDE; O25360; -. DR EnsemblBacteria; AAD07704; AAD07704; HP_0643. DR GeneID; 900020; -. DR KEGG; hpy:HP0643; -. DR PATRIC; 20592571; VBIHelPyl33062_0674. DR eggNOG; ENOG4105C20; Bacteria. DR eggNOG; COG0008; LUCA. DR KO; K01885; -. DR OMA; HHAPVVR; -. DR OrthoDB; EOG6DRPF7; -. DR BioCyc; HPY:HP0643-MONOMER; -. DR BRENDA; 6.1.1.24; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004818; F:glutamate-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0006424; P:glutamyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.350; -; 1. DR Gene3D; 1.10.1160.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_00022_B; Glu_tRNA_synth_B; 1. DR InterPro; IPR008925; aa-tRNA-synth_I_codon-bd. DR InterPro; IPR020751; aa-tRNA-synth_I_codon-bd_sub2. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR004527; Glu-tRNA-ligase_bac/mito. DR InterPro; IPR000924; Glu/Gln-tRNA-synth. DR InterPro; IPR020061; Glu/Gln-tRNA-synth_Ib_a-bdl. DR InterPro; IPR020058; Glu/Gln-tRNA-synth_Ib_cat-dom. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00749; tRNA-synt_1c; 1. DR PRINTS; PR00987; TRNASYNTHGLU. DR SUPFAM; SSF48163; SSF48163; 1. DR TIGRFAMs; TIGR00464; gltX_bact; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 439 GlutamylGlutaminyl-tRNA synthetase. FT /FTId=PRO_0000119577. FT MOTIF 6 16 "HIGH" region. FT MOTIF 232 236 "KMSKS" region. FT BINDING 235 235 ATP. {ECO:0000250}. SQ SEQUENCE 439 AA; 51003 MW; 9819BA3C49F60C9A CRC64; MLRFAPSPTG DMHIGNLRAA IFNYIVAKQQ YKPFLIRIED TDKERNIEGK DQEILEILKL MGISWDKLVY QSHNIDYHRE MAEKLLKENK AFYCYASAEF LEREKEKAKN EKRPFRYSDE WATLEKDKHH APVVRLKAPN HAVSFNDAIK KEVKFEPDEL DSFVLLRQDK SPTYNFACAC DDLLYKISLI IRGEDHVSNT PKQILIQQAL GSNDPIVYAH LPIILDEVSG KKMSKRDEAS SVKWLLNQGF LPVAIANYLI TIGNKVPKEV FSLDEAIEWF SLENLSSSPA HFNLKYLKHL NHEHLKLLDD DKLLELTSIK DKNLLGLLRL FIEECGTLLE LREKISLFLE PKDIVKTYEN EDFKERCLAL FNALTSMDFQ AYKDFESFKK EAMRLSQLKG KDFFKPLRIL LTGNSHGVEL PLIFPYIQSH HQEVLRLKA // ID SYFA_HELPY Reviewed; 328 AA. AC P56146; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Phenylalanine--tRNA ligase alpha subunit; DE EC=6.1.1.20; DE AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; DE Short=PheRS; GN Name=pheS; OrderedLocusNames=HP_0403; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-phenylalanine + tRNA(Phe) = AMP + CC diphosphate + L-phenylalanyl-tRNA(Phe). CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 2 magnesium ions per tetramer. {ECO:0000250}; CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. Phe-tRNA synthetase alpha subunit type 1 subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07472.1; -; Genomic_DNA. DR PIR; C64570; C64570. DR RefSeq; NP_207201.1; NC_000915.1. DR RefSeq; WP_000557020.1; NC_018939.1. DR ProteinModelPortal; P56146; -. DR SMR; P56146; 75-328. DR STRING; 85962.HP0403; -. DR PaxDb; P56146; -. DR PRIDE; P56146; -. DR EnsemblBacteria; AAD07472; AAD07472; HP_0403. DR GeneID; 900083; -. DR KEGG; heo:C694_02045; -. DR KEGG; hpy:HP0403; -. DR PATRIC; 20592045; VBIHelPyl33062_0416. DR eggNOG; ENOG4105CSS; Bacteria. DR eggNOG; COG0016; LUCA. DR KO; K01889; -. DR OMA; KGTGWLE; -. DR OrthoDB; EOG6WX4QN; -. DR BioCyc; HPY:HP0403-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004826; F:phenylalanine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0006432; P:phenylalanyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00281; Phe_tRNA_synth_alpha1; 1. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004529; Phe-tRNA-synth_IIc_asu. DR InterPro; IPR004188; Phe-tRNA_ligase_II_N. DR InterPro; IPR022911; Phe_tRNA_ligase_alpha1_bac. DR InterPro; IPR002319; Phenylalanyl-tRNA_Synthase. DR InterPro; IPR010978; tRNA-bd_arm. DR Pfam; PF02912; Phe_tRNA-synt_N; 1. DR Pfam; PF01409; tRNA-synt_2d; 1. DR SUPFAM; SSF46589; SSF46589; 1. DR TIGRFAMs; TIGR00468; pheS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Metal-binding; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 328 Phenylalanine--tRNA ligase alpha subunit. FT /FTId=PRO_0000126714. FT METAL 245 245 Magnesium. {ECO:0000250}. SQ SEQUENCE 328 AA; 38045 MW; 176FF8115DC1543A CRC64; MHTLIERLEK VTNSKELEEA RLNALGKKGV FADKFNQLKH LNGEEKNAFA KEIHHYKQAF EKAFEWKKKA IIELELEERL KKEKIDVSLF NAIKTSSSHP LNYTKNKIIE FFTPLGYKLE IGSLVEDDFH NFSALNLPPY HPARDMQDTF YFKDHKLLRT HTSPVQIHTM QEQTPPIKMI CLGETFRRDY DLTHTPMFHQ IEGLVVDQKG NIRFTHLKGV IEDFLHYFFG GVKLRWRSSF FPFTEPSAEV DISCVFCKQE GCRVCSHTGW LEVLGCGMVN NAVFEAIGYE NVSGFAFGMG IERLAMLTCQ INDLRSFFET DLRVLESF // ID SYGA_HELPY Reviewed; 303 AA. AC P56453; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Glycine--tRNA ligase alpha subunit; DE EC=6.1.1.14; DE AltName: Full=Glycyl-tRNA synthetase alpha subunit; DE Short=GlyRS; GN Name=glyQ; OrderedLocusNames=HP_0960; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + glycine + tRNA(Gly) = AMP + diphosphate CC + glycyl-tRNA(Gly). CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08002.1; -; Genomic_DNA. DR PIR; H64639; H64639. DR RefSeq; NP_207752.1; NC_000915.1. DR RefSeq; WP_001150920.1; NC_018939.1. DR ProteinModelPortal; P56453; -. DR SMR; P56453; 4-282. DR IntAct; P56453; 6. DR STRING; 85962.HP0960; -. DR PaxDb; P56453; -. DR PRIDE; P56453; -. DR EnsemblBacteria; AAD08002; AAD08002; HP_0960. DR GeneID; 899493; -. DR KEGG; heo:C694_04945; -. DR KEGG; hpy:HP0960; -. DR PATRIC; 20593233; VBIHelPyl33062_0998. DR eggNOG; ENOG4108HMW; Bacteria. DR eggNOG; COG0752; LUCA. DR KO; K01878; -. DR OMA; LGSYYQF; -. DR OrthoDB; EOG661H9S; -. DR BioCyc; HPY:HP0960-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004820; F:glycine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006426; P:glycyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00254; Gly_tRNA_synth_alpha; 1. DR InterPro; IPR006194; Gly-tRNA-synth_heterodimer. DR InterPro; IPR002310; Gly-tRNA_ligase_asu. DR Pfam; PF02091; tRNA-synt_2e; 1. DR PRINTS; PR01044; TRNASYNTHGA. DR TIGRFAMs; TIGR00388; glyQ; 1. DR PROSITE; PS50861; AA_TRNA_LIGASE_II_GLYAB; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 303 Glycine--tRNA ligase alpha subunit. FT /FTId=PRO_0000072842. SQ SEQUENCE 303 AA; 34936 MW; 08B5F386AED651D4 CRC64; MQDFSSLLLK LQEYWKNQGC LVIQPYDIPA GAGTFHPATL LRSLDKKPWN VAYVAPSRRP TDGRYGENPN RLGSYYQFQV VIKPSPSNIQ ELYLKSLEVL GINLNEHDIR FVEDNWESPT LGAWGLGWEV WLDGMEVTQF TYFQQVGGIA CSPIPVEITY GLERLAMYVQ KVENILEIEW AKKNHDSVNY AQVHLESEYE FSKYHFETAS VKRLLEMFKN AQAEALHCLE NKLPLPAYDF VMLCSHFFNI LDARKAISVA ERQNYILQIR DLAKGCALLY KEQEEEREER LKNALTKAEN GVS // ID SYH_HELPY Reviewed; 442 AA. AC P56455; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Histidine--tRNA ligase; DE EC=6.1.1.21; DE AltName: Full=Histidyl-tRNA synthetase; DE Short=HisRS; GN Name=hisS; OrderedLocusNames=HP_1190; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-histidine + tRNA(His) = AMP + CC diphosphate + L-histidyl-tRNA(His). CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08236.1; -; Genomic_DNA. DR PIR; F64668; F64668. DR RefSeq; NP_207981.1; NC_000915.1. DR RefSeq; WP_000632518.1; NC_018939.1. DR ProteinModelPortal; P56455; -. DR STRING; 85962.HP1190; -. DR PaxDb; P56455; -. DR PRIDE; P56455; -. DR EnsemblBacteria; AAD08236; AAD08236; HP_1190. DR GeneID; 899952; -. DR KEGG; heo:C694_06160; -. DR KEGG; hpy:HP1190; -. DR PATRIC; 20593739; VBIHelPyl33062_1247. DR eggNOG; ENOG4105CUT; Bacteria. DR eggNOG; COG0124; LUCA. DR KO; K01892; -. DR OMA; IACMHEE; -. DR OrthoDB; EOG6BPDH4; -. DR BioCyc; HPY:HP1190-MONOMER; -. DR BRENDA; 6.1.1.21; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004821; F:histidine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006427; P:histidyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.800; -; 1. DR HAMAP; MF_00127; His_tRNA_synth; 1. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR015807; His-tRNA-ligase. DR InterPro; IPR004516; HisRS/HisZ. DR PANTHER; PTHR11476; PTHR11476; 1. DR Pfam; PF03129; HGTP_anticodon; 1. DR PIRSF; PIRSF001549; His-tRNA_synth; 1. DR SUPFAM; SSF52954; SSF52954; 1. DR TIGRFAMs; TIGR00442; hisS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 442 Histidine--tRNA ligase. FT /FTId=PRO_0000136174. SQ SEQUENCE 442 AA; 50172 MW; 7D3282ED693E2B7D CRC64; MITPKVLSGF KDRLPKDAIQ KAQLLAKVSV VFQSFGFVPI ETPHLEYAQT LLPDASSDIQ KEIYRFKDHG DRDVALRFDL TVPLARFVSL HHQTLGMPFK RYAIGNVFRG ERAQKGRYRE FTQCDFDFIG SESLVCDAEI IQVIVASLKA LDLEDFCVSI NHRKILNGIC EYFGISQVNE ALRIVDKLEK IGLNGVEEEL KKECGLNSNT IKELLELIQI KQNDLSHAEF FEKIAYLKDY NENLKKGIQD LERLYQLLGD LQISQNLYKI DFSIARGLGY YTGIVYETTL NEMKSLGSVC SGGRYDHLTK NFSKENLQGV GASIGIDRLI VALSEMQLLD ERSTQAKVLI ACMHEEYFSY ANRLAESLRQ SGIFSEVYPE AQKIKKPFSY ANHKGHEFVA VIGEEEFKSE TLSLKNMHSG MQLNCLSFLK ALEIIGENDE DL // ID SYC_HELPY Reviewed; 465 AA. AC P41259; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 20-JAN-2016, entry version 111. DE RecName: Full=Cysteine--tRNA ligase; DE EC=6.1.1.16; DE AltName: Full=Cysteinyl-tRNA synthetase; DE Short=CysRS; GN Name=cysS; OrderedLocusNames=HP_0886; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 278-465. RC STRAIN=ATCC 49503 / 60190; RX PubMed=8144644; RA Cover T.L., Tummuru M.K., Cao P., Thompson S.A., Blaser M.J.; RT "Divergence of genetic sequences for the vacuolating cytotoxin among RT Helicobacter pylori strains."; RL J. Biol. Chem. 269:10566-10573(1994). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 407-465. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=8168917; RA Phadnis S.H., Ilver D.J., Janzon L., Normark S., Westblom T.U.; RT "Pathological significance and molecular characterization of the RT vacuolating toxin gene of Helicobacter pylori."; RL Infect. Immun. 62:1557-1565(1994). CC -!- CATALYTIC ACTIVITY: ATP + L-cysteine + tRNA(Cys) = AMP + CC diphosphate + L-cysteinyl-tRNA(Cys). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07934.1; -; Genomic_DNA. DR EMBL; U05676; AAA17656.1; -; Unassigned_DNA. DR EMBL; U07145; AAA18866.1; -; Unassigned_DNA. DR PIR; F64630; F64630. DR RefSeq; NP_207679.1; NC_000915.1. DR RefSeq; WP_000471359.1; NC_018939.1. DR ProteinModelPortal; P41259; -. DR DIP; DIP-3687N; -. DR IntAct; P41259; 1. DR MINT; MINT-184863; -. DR STRING; 85962.HP0886; -. DR PaxDb; P41259; -. DR PRIDE; P41259; -. DR EnsemblBacteria; AAD07934; AAD07934; HP_0886. DR GeneID; 899414; -. DR KEGG; heo:C694_04540; -. DR KEGG; hpy:HP0886; -. DR PATRIC; 20593061; VBIHelPyl33062_0918. DR eggNOG; ENOG4105C8N; Bacteria. DR eggNOG; COG0215; LUCA. DR KO; K01883; -. DR OMA; HENEACQ; -. DR OrthoDB; EOG6RVFXC; -. DR BioCyc; HPY:HP0886-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004817; F:cysteine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006423; P:cysteinyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00041; Cys_tRNA_synth; 1. DR InterPro; IPR015803; Cys-tRNA-ligase. DR InterPro; IPR015273; Cys-tRNA-synt_Ia_DALR. DR InterPro; IPR024909; Cys-tRNA/MSH_ligase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR032678; tRNA-synt_1_cat_dom. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR PANTHER; PTHR10890; PTHR10890; 1. DR Pfam; PF09190; DALR_2; 1. DR Pfam; PF01406; tRNA-synt_1e; 1. DR PRINTS; PR00983; TRNASYNTHCYS. DR SMART; SM00840; DALR_2; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR TIGRFAMs; TIGR00435; cysS; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 465 Cysteine--tRNA ligase. FT /FTId=PRO_0000159409. FT MOTIF 29 39 "HIGH" region. FT MOTIF 269 273 "KMSKS" region. FT METAL 27 27 Zinc. {ECO:0000250}. FT METAL 207 207 Zinc. {ECO:0000250}. FT METAL 237 237 Zinc. {ECO:0000250}. FT METAL 241 241 Zinc. {ECO:0000250}. FT BINDING 272 272 ATP. {ECO:0000250}. FT VARIANT 280 280 V -> I (in strain: ATCC 49503). FT VARIANT 332 332 T -> N (in strain: ATCC 49503). FT VARIANT 392 392 I -> V (in strain: ATCC 49503). FT VARIANT 432 432 R -> Q (in strain: ATCC 49503 and NCTC FT 11638). FT VARIANT 434 434 D -> N (in strain: NCTC 11638). FT VARIANT 440 440 S -> H (in strain: ATCC 49503). SQ SEQUENCE 465 AA; 53132 MW; B7053D58BCD87F30 CRC64; MFIYDTKLKQ KVPFEPLVQN KANIYVCGPT VYDDAHLGHA RSAIAFDLLR RTLELSGYEV MLVRNFTDID DKIINKALKE NKSIQELSSI YIESYTRDLN ALNVKKPSLE PKASEYLDAM VGMIETLLEK NIAYQVSNGD IYLDTSKDKD YGSLSVHNSS IEFGRIGLVQ EKRLEQDFVL WKSYKGDNDV GFDSPLGKGR PGWHIECSSM VFETLALTNT PYQIDIHAGG ADLLFPHHEN EACQTRCAFG VELAKYWMHN GFVNINNEKM SKSLGNSFFV KDALKNYDGE ILRNYLLGVH YRSVLNFNEE DLLVSKKRLD KIYRLKQRVL GTLGGINPNF KKEILECMQD DLNVSKALSV LESMLSSTNE KLDQNPKNKA LKGEILANLK FIEELLGIGF KDPSAYFQLG VSESEKQEIE NKIEERKRAK ERKDFLKADS IREELLKQKI ALMDTPQGTI WEKFF // ID SYE1_HELPY Reviewed; 463 AA. AC P96551; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 102. DE RecName: Full=Glutamate--tRNA ligase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; DE EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022}; DE AltName: Full=Glutamyl-tRNA synthetase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; DE Short=GluRS 1 {ECO:0000255|HAMAP-Rule:MF_00022}; GN Name=gltX1 {ECO:0000255|HAMAP-Rule:MF_00022}; GN OrderedLocusNames=HP_0476; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 351-463. RA Akopyants N.S., Kersulyte D., Clifton S.W., Youree B.E., Reece C.A., RA Roe B.A., Berg D.E.; RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the attachment of glutamate to tRNA(Glu) in a CC two-step reaction: glutamate is first activated by ATP to form CC Glu-AMP and then transferred to the acceptor end of tRNA(Glu). CC {ECO:0000255|HAMAP-Rule:MF_00022}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamate + tRNA(Glu) = AMP + CC diphosphate + L-glutamyl-tRNA(Glu). {ECO:0000255|HAMAP- CC Rule:MF_00022}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00022}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00022}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00022}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07544.1; -; Genomic_DNA. DR EMBL; AC000108; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; D64579; D64579. DR RefSeq; NP_207274.1; NC_000915.1. DR RefSeq; WP_000053246.1; NC_018939.1. DR ProteinModelPortal; P96551; -. DR DIP; DIP-3351N; -. DR IntAct; P96551; 2. DR MINT; MINT-165494; -. DR STRING; 85962.HP0476; -. DR PaxDb; P96551; -. DR PRIDE; P96551; -. DR EnsemblBacteria; AAD07544; AAD07544; HP_0476. DR GeneID; 898901; -. DR KEGG; heo:C694_02440; -. DR KEGG; hpy:HP0476; -. DR PATRIC; 20592223; VBIHelPyl33062_0500. DR eggNOG; ENOG4105C20; Bacteria. DR eggNOG; COG0008; LUCA. DR KO; K01885; -. DR OMA; NSSPSCF; -. DR OrthoDB; EOG6DRPF7; -. DR BioCyc; HPY:HP0476-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004818; F:glutamate-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0006424; P:glutamyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.350; -; 1. DR Gene3D; 1.10.1160.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_00022_B; Glu_tRNA_synth_B; 1. DR InterPro; IPR008925; aa-tRNA-synth_I_codon-bd. DR InterPro; IPR020751; aa-tRNA-synth_I_codon-bd_sub2. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR004527; Glu-tRNA-ligase_bac/mito. DR InterPro; IPR000924; Glu/Gln-tRNA-synth. DR InterPro; IPR020061; Glu/Gln-tRNA-synth_Ib_a-bdl. DR InterPro; IPR020058; Glu/Gln-tRNA-synth_Ib_cat-dom. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00749; tRNA-synt_1c; 1. DR PRINTS; PR00987; TRNASYNTHGLU. DR SUPFAM; SSF48163; SSF48163; 1. DR TIGRFAMs; TIGR00464; gltX_bact; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 463 Glutamate--tRNA ligase 1. FT /FTId=PRO_0000119576. FT MOTIF 10 20 "HIGH" region. FT MOTIF 238 242 "KMSKS" region. FT BINDING 241 241 ATP. {ECO:0000255|HAMAP-Rule:MF_00022}. FT CONFLICT 369 369 V -> I (in Ref. 2). {ECO:0000305}. FT CONFLICT 398 398 A -> V (in Ref. 2). {ECO:0000305}. FT CONFLICT 411 411 R -> H (in Ref. 2). {ECO:0000305}. FT CONFLICT 454 454 V -> L (in Ref. 2). {ECO:0000305}. SQ SEQUENCE 463 AA; 53351 MW; F8A69D8B00E8BEDC CRC64; MSLIVTRFAP SPTGYLHIGG LRTAIFNYLF ARANQGKFFL RIEDTDLSRN SIEAANAIIE AFKWVGLEYD GEILYQSKRF EIYKEYIQKL LDEDKAYYCY MSKEELDALR EEQKARKETP RYDNRYRDFK GTPPKGIEPV VRIKVPQNEV IGFNDGVKGE VKVNTNELDD FIIARSDGTP TYNFVVTIDD ALMGITDVIR GDDHLSNTPK QIVLYKALNF KIPNFFHVPM ILNEEGQKLS KRHGATNVMD YQEMGYLKEA LVNFLARLGW SYQDKEVFSM QELLELFDPK DLNSSPSCFS WHKLNWLNAH YLKNQSVQEL LKLLKPFSFS DLSHLNPTQL DRLLDALKER SQTLKELALK IDEVLIAPVE YEEKVFKKLN QALVMPLLEK FKLELNKANF NDESALENAM RQIIEEEKIK AGSFMQPLRL ALLGKGGGIG LKEALFILGK TESVKRIEDF LKN // ID SYK_HELPY Reviewed; 501 AA. AC P56126; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 109. DE RecName: Full=Lysine--tRNA ligase; DE EC=6.1.1.6; DE AltName: Full=Lysyl-tRNA synthetase; DE Short=LysRS; GN Name=lysS; OrderedLocusNames=HP_0182; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate CC + L-lysyl-tRNA(Lys). CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 3 Mg(2+) ions per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07251.1; -; Genomic_DNA. DR PIR; F64542; F64542. DR RefSeq; NP_206981.1; NC_000915.1. DR RefSeq; WP_000492582.1; NC_018939.1. DR ProteinModelPortal; P56126; -. DR DIP; DIP-3629N; -. DR IntAct; P56126; 3. DR MINT; MINT-183413; -. DR STRING; 85962.HP0182; -. DR PaxDb; P56126; -. DR PRIDE; P56126; -. DR EnsemblBacteria; AAD07251; AAD07251; HP_0182. DR GeneID; 900250; -. DR KEGG; heo:C694_00905; -. DR KEGG; hpy:HP0182; -. DR PATRIC; 20591587; VBIHelPyl33062_0193. DR eggNOG; ENOG4105CRK; Bacteria. DR eggNOG; COG1190; LUCA. DR KO; K04567; -. DR OMA; DMMNLTE; -. DR OrthoDB; EOG69PQ2M; -. DR BioCyc; HPY:HP0182-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004824; F:lysine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006430; P:lysyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00252; Lys_tRNA_synth_class2; 1. DR InterPro; IPR004364; aa-tRNA-synt_II. DR InterPro; IPR018150; aa-tRNA-synt_II-like. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR002313; Lys-tRNA-ligase_II. DR InterPro; IPR018149; Lys-tRNA-synth_II_C. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004365; NA-bd_OB_tRNA. DR PANTHER; PTHR22594; PTHR22594; 1. DR Pfam; PF00152; tRNA-synt_2; 1. DR Pfam; PF01336; tRNA_anti-codon; 1. DR PRINTS; PR00982; TRNASYNTHLYS. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00499; lysS_bact; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Metal-binding; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 501 Lysine--tRNA ligase. FT /FTId=PRO_0000152636. FT METAL 402 402 Magnesium 1. {ECO:0000250}. FT METAL 409 409 Magnesium 1. {ECO:0000250}. FT METAL 409 409 Magnesium 2. {ECO:0000250}. SQ SEQUENCE 501 AA; 57782 MW; 594EF69873E9428E CRC64; MFSNQYIQQR IHKANSLREE GKNPYQNGLK RSLTNAAFLE KYAYVKGLEE PKDKEKCESI VGRVKLLRLM GKACFIKVED ESTILQVYVS QNELNDEFKS LKKHLEVGDI VLVKGFPFAT KTGELSIHAL EFHILSKTIV PLPEKFHGLS DIELRYRQRY LDLIVNPSVK DVFKKRSLIV SSVRKFFEME GFLEVETPMM HPIPGGANAR PFITYHNALE VERYLRIAPE LYLKRLIVGG FEAVFEINRN FRNEGMDHSH NPEFTMIEFY WAYHTYEDLI ELSKRLFDYL LKTLNLDSKI IYNDMEVDFN QTSVISYLDA LETIGGISKD ILEKEDRLLA YLLEQGIKVE PNLTYGKLLA EAFDHFVEHQ LINPTFVTQY PIEISPLARR NDSNPNIADR FELFIAGKEI ANGFSELNDP LDQLERFKNQ VAEKEKGDEE AQYMDEDYVW ALAHGMPPTA GQGIGIDRLV MLLTGAKSIK DVILFPAMRP VKNDFNVESE E // ID SYL_HELPY Reviewed; 806 AA. AC P56457; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Leucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00049}; DE EC=6.1.1.4 {ECO:0000255|HAMAP-Rule:MF_00049}; DE AltName: Full=Leucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00049}; DE Short=LeuRS {ECO:0000255|HAMAP-Rule:MF_00049}; GN Name=leuS {ECO:0000255|HAMAP-Rule:MF_00049}; GN OrderedLocusNames=HP_1547; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-leucine + tRNA(Leu) = AMP + CC diphosphate + L-leucyl-tRNA(Leu). {ECO:0000255|HAMAP- CC Rule:MF_00049}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00049}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00049}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08585.1; -; Genomic_DNA. DR PIR; C64713; C64713. DR RefSeq; NP_208338.1; NC_000915.1. DR RefSeq; WP_000345715.1; NC_018939.1. DR ProteinModelPortal; P56457; -. DR DIP; DIP-3469N; -. DR IntAct; P56457; 1. DR MINT; MINT-160274; -. DR STRING; 85962.HP1547; -. DR PaxDb; P56457; -. DR PRIDE; P56457; -. DR EnsemblBacteria; AAD08585; AAD08585; HP_1547. DR GeneID; 899744; -. DR KEGG; heo:C694_08015; -. DR KEGG; hpy:HP1547; -. DR PATRIC; 20594517; VBIHelPyl33062_1626. DR eggNOG; ENOG4105C8T; Bacteria. DR eggNOG; COG0495; LUCA. DR KO; K01869; -. DR OMA; EGAHRFI; -. DR OrthoDB; EOG63Z74X; -. DR BioCyc; HPY:HP1547-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004823; F:leucine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006429; P:leucyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 2. DR HAMAP; MF_00049_B; Leu_tRNA_synth_B; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR002302; Leu-tRNA-ligase. DR InterPro; IPR025709; Leu_tRNA-synth_edit. DR InterPro; IPR015413; Methionyl/Leucyl_tRNA_Synth. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR PANTHER; PTHR11946:SF7; PTHR11946:SF7; 3. DR Pfam; PF00133; tRNA-synt_1; 1. DR Pfam; PF13603; tRNA-synt_1_2; 1. DR Pfam; PF09334; tRNA-synt_1g; 1. DR PRINTS; PR00985; TRNASYNTHLEU. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 1. DR TIGRFAMs; TIGR00396; leuS_bact; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 806 Leucine--tRNA ligase. FT /FTId=PRO_0000152026. FT MOTIF 38 48 "HIGH" region. FT MOTIF 572 576 "KMSKS" region. FT BINDING 575 575 ATP. {ECO:0000255|HAMAP-Rule:MF_00049}. SQ SEQUENCE 806 AA; 93164 MW; 731807226C288678 CRC64; MDFINIEKKW QEFWWKNKSF EPKDDFNLPK KYILSMLPYP SGEIHMGHVR NYTIGDALAR YYRLHHYNVL HPMGFDSFGM PAENAAIKHG IHPKTWTYEN IENMQKEFEA LGFSFSKNRE FATSDPDYTK FEQRFFIDLW EKGLIYRKKA MLNWCPNDKT VLANEQVIDG RCWRCDTEVI QKELYQYYLK ITNYAEELLK DLEALEDHWP SQVLIMQKNW IGKSSGLQFG FKIADECLKA CNGIQEIEVF TTRADTIYGV TYIAIAPEHP LVEHAIKQVS QEVSKMIKAI LNTTQRERAL EKKGAFLGIY AIHPLTKQKI PVWVANFALA NYGSGALMGV PACDERDFEF ANLYHIPIKV ITQSPQNLPH TKEEVLKNSG EWSDLSSSVA REQIIAYFEK ENLGKRVINY RLQDWGVSRQ RYWGAPIPMI HCNHCGIVPE TQLPVTLPED IVIDGEGNPL EKHASWKFTQ CPKCHKNALR ETDTMDTFIQ SSWYFLRYTT PKNQRENQAF DQNYLKYFMP VDTYIGGIEH AILHLLYARF FTKALRDLGY LHLDEPFKQL ITQGMVLKNG AKMSKSKGNV VSPKEILKKY GADAARLFIL FAAPPAKELE WNDSALEGAH RFIKRLYDKA NAINPTTSKP EFKEVSLNEA QKLGRKKVYE ALKKSHEIFN KAESAYSFNT LIASCMEALN ALSAQNNERI LCEGYFVLLQ ILEPIIPHTA WELSERLFKR ENFKPIAIDE DALMEDFMTL GLTINGKRRA ELKVNINASK EEIIVLAKKE LEKYLENASV KKEIYVPNKL VNFVIA // ID SYP_HELPY Reviewed; 577 AA. AC P56124; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 102. DE RecName: Full=Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01569}; DE EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01569}; DE AltName: Full=Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01569}; DE Short=ProRS {ECO:0000255|HAMAP-Rule:MF_01569}; GN Name=proS {ECO:0000255|HAMAP-Rule:MF_01569}; GN OrderedLocusNames=HP_0238; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of proline to tRNA(Pro) in a CC two-step reaction: proline is first activated by ATP to form Pro- CC AMP and then transferred to the acceptor end of tRNA(Pro). As CC ProRS can inadvertently accommodate and process non-cognate amino CC acids such as alanine and cysteine, to avoid such errors it has CC two additional distinct editing activities against alanine. One CC activity is designated as 'pretransfer' editing and involves the CC tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other CC activity is designated 'posttransfer' editing and involves CC deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- CC tRNA(Pro) is not edited by ProRS. {ECO:0000255|HAMAP- CC Rule:MF_01569}. CC -!- CATALYTIC ACTIVITY: ATP + L-proline + tRNA(Pro) = AMP + CC diphosphate + L-prolyl-tRNA(Pro). {ECO:0000255|HAMAP- CC Rule:MF_01569}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01569}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01569}. CC -!- DOMAIN: Consists of three domains: the N-terminal catalytic CC domain, the editing domain and the C-terminal anticodon-binding CC domain. {ECO:0000255|HAMAP-Rule:MF_01569}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. ProS type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_01569}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07305.1; -; Genomic_DNA. DR PIR; F64549; F64549. DR RefSeq; NP_207036.1; NC_000915.1. DR RefSeq; WP_000899254.1; NC_000915.1. DR ProteinModelPortal; P56124; -. DR DIP; DIP-3265N; -. DR IntAct; P56124; 2. DR MINT; MINT-181432; -. DR STRING; 85962.HP0238; -. DR PaxDb; P56124; -. DR PRIDE; P56124; -. DR EnsemblBacteria; AAD07305; AAD07305; HP_0238. DR GeneID; 900126; -. DR KEGG; hpy:HP0238; -. DR PATRIC; 20591701; VBIHelPyl33062_0249. DR eggNOG; ENOG4105C90; Bacteria. DR eggNOG; COG0442; LUCA. DR KO; K01881; -. DR OMA; IQPAELW; -. DR OrthoDB; EOG6TTVMR; -. DR BioCyc; HPY:HP0238-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004827; F:proline-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006433; P:prolyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.800; -; 1. DR Gene3D; 3.90.960.10; -; 1. DR HAMAP; MF_01569; Pro_tRNA_synth_type1; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR002316; Pro-tRNA-ligase_IIa. DR InterPro; IPR004500; Pro-tRNA-synth_IIa_bac-type. DR InterPro; IPR023717; Pro-tRNA-Synthase_IIa_type1. DR InterPro; IPR007214; YbaK/aa-tRNA-synth-assoc-dom. DR PANTHER; PTHR11451:SF3; PTHR11451:SF3; 2. DR Pfam; PF03129; HGTP_anticodon; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR Pfam; PF04073; tRNA_edit; 1. DR PRINTS; PR01046; TRNASYNTHPRO. DR SUPFAM; SSF52954; SSF52954; 1. DR SUPFAM; SSF55826; SSF55826; 1. DR TIGRFAMs; TIGR00409; proS_fam_II; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 577 Proline--tRNA ligase. FT /FTId=PRO_0000139331. SQ SEQUENCE 577 AA; 65223 MW; B8CC0D06BEDCBA7F CRC64; MLFSKLFAPT LKEPPKDAVL KSHKHLAQAG YIYQVGSGIY NFLPLAKKVL DKIENITHKR MQEHGAQNIL MSFVVLASLW EKSGRLDKYG KELLVFKDRK DNDFVLSPTL EENITEIAAN FIKSYKQLPV HLYQIHTKFR DEIRPRFGLV RAREFIMKDG YSFHEDAESL DKEFLNTQSA YKEILSDLGL DFRIVEADSG AIGGSKSREF VVLTECGEDT IVVCQNCDYA ANIEIAKRSK RPEPLNVPKA QLAKFPTPNT TSAQSVAEFF KTEPYFVLKA LVRKVIHKDK ETLACFFVRG DDNLEEVKAL NALNIIGANA LELREASQKD LDNVGLIAGF IGPYGLKKHV SYIIFDEDLK EGDCLIAGAN EKDFHAVGVD LKGFENLVYA DIVQVKESDR CPNCQGALKY HKSLEVGHIF KLGQGYAKSL KASFLDKNGK EQFFEMGCYG IGISRLLSAI LEQKSDDLGC VWTKNTAPFD VVIVVSNWKD EAQKKLAFEV YERLLQKGVD ALLDDRDARF GAKMRDFELI GERLALIIGK QTLESKEFEC IKRANLEKQT IKDIELEEKI LEMLESE // ID SYA_HELPY Reviewed; 847 AA. AC P56452; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; DE EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036}; DE AltName: Full=Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; DE Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036}; GN Name=alaS {ECO:0000255|HAMAP-Rule:MF_00036}; GN OrderedLocusNames=HP_1241; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a CC two-step reaction: alanine is first activated by ATP to form Ala- CC AMP and then transferred to the acceptor end of tRNA(Ala). Also CC edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its CC editing domain. {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- CATALYTIC ACTIVITY: ATP + L-alanine + tRNA(Ala) = AMP + CC diphosphate + L-alanyl-tRNA(Ala). {ECO:0000255|HAMAP- CC Rule:MF_00036}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00036}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- DOMAIN: Consists of three domains; the N-terminal catalytic CC domain, the editing domain and the C-terminal C-Ala domain. The CC editing domain removes incorrectly charged amino acids, while the CC C-Ala domain, along with tRNA(Ala), serves as a bridge to CC cooperatively bring together the editing and aminoacylation CC centers thus stimulating deacylation of misacylated tRNAs. CC {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00036}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08285.1; -; Genomic_DNA. DR PIR; A64675; A64675. DR RefSeq; NP_208033.1; NC_000915.1. DR RefSeq; WP_000354754.1; NC_018939.1. DR ProteinModelPortal; P56452; -. DR DIP; DIP-3216N; -. DR IntAct; P56452; 4. DR MINT; MINT-168606; -. DR STRING; 85962.HP1241; -. DR PaxDb; P56452; -. DR PRIDE; P56452; -. DR EnsemblBacteria; AAD08285; AAD08285; HP_1241. DR GeneID; 900262; -. DR KEGG; heo:C694_06400; -. DR KEGG; hpy:HP1241; -. DR PATRIC; 20593853; VBIHelPyl33062_1297. DR eggNOG; ENOG4105CIM; Bacteria. DR eggNOG; COG0013; LUCA. DR KO; K01872; -. DR OMA; FSITDGQ; -. DR OrthoDB; EOG6Q2SQ2; -. DR BioCyc; HPY:HP1241-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004813; F:alanine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006419; P:alanyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00036_B; Ala_tRNA_synth_B; 1. DR InterPro; IPR002318; Ala-tRNA-lgiase_IIc. DR InterPro; IPR018162; Ala-tRNA-ligase_IIc_anticod-bd. DR InterPro; IPR018165; Ala-tRNA-synth_IIc_core. DR InterPro; IPR018164; Ala-tRNA-synth_IIc_N. DR InterPro; IPR023033; Ala_tRNA_ligase_euk/bac. DR InterPro; IPR003156; DHHA1_dom. DR InterPro; IPR018163; Thr/Ala-tRNA-synth_IIc_edit. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR012947; tRNA_SAD. DR Pfam; PF02272; DHHA1; 1. DR Pfam; PF01411; tRNA-synt_2c; 1. DR Pfam; PF07973; tRNA_SAD; 1. DR PRINTS; PR00980; TRNASYNTHALA. DR SMART; SM00863; tRNA_SAD; 1. DR SUPFAM; SSF101353; SSF101353; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF55186; SSF55186; 1. DR TIGRFAMs; TIGR00344; alaS; 1. DR PROSITE; PS50860; AA_TRNA_LIGASE_II_ALA; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; RNA-binding; tRNA-binding; Zinc. FT CHAIN 1 847 Alanine--tRNA ligase. FT /FTId=PRO_0000075125. FT METAL 554 554 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 558 558 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 656 656 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 660 660 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. SQ SEQUENCE 847 AA; 94700 MW; 56464EDB61FC8357 CRC64; MDIRNEFLQF FQNKGHAVYP SMPLVPNDAT LLFTNAGMVQ FKDIFTGIVP RPSIPRAASS QLCMRAGGKH NDLENVGYTA RHHTLFEMLG NFSFGDYFKE EAILFAWEFV TKNLGFKPKD LYISVHEKDD EAVKLWEKFV PVDRIKKMGD KDNFWQMGDS GPCGPCSEIY IDQGEKHFKG SEDYFGGEGD RFLEIWNLVF MQYERSNDGV LSPLPKPSID TGMGLERVQA LLEHKLNNFD SSLFAPLMEE ISELTSLDYA SEFQPSFRVV ADHARAVAFL LAQGVHFNKE GRGYVLRRIL RRALRHGYLM GLKEAFLYKV VGVVCEQFAN THAYLKESKE MVVKECFEEE EHFLETLESG MELFNLSLKH LNENKIFDGK IAFKLYDTFG FPLDLTNDML RSHGACADMQ GFELCMQEQV KRSKASWKGK QNNADFSAIL NAYAPNVFVG YETTECSAKV LGFFDSDFKE ITDANPNQEV WVLLEKTPFY AEGGGAIGDR GALFKDNGEV AIVLDTKNFF GLNFSLLEIK KALKKGDQVI AQVSDERFEI AKHHSATHLL QSALREVLGS HVSQAGSLVE SKRLRFDFSH AKALNDEELE KVEDLVNAQI FKHLNSQVEH MPLNQAKDKG ALALFSEKYA ENVRVVSFKE ASIELCGGIH VENTGLIGGF RIVKESGVSS GVRRIEAVCG KAFYQLAKEE NKELKNAKTL LKNNDVIAGI NKLKESVKNS QKAPVSMDLP VEKIHGVNLV VGVVEQGDIK EMIDRLKSKH ERLLAMVFKK ENERITLACG VKNAPIKANV WANEVAQILG GKGGGRGDFA SAGGKDIENL QAALNLAKNT ALKALEG // ID SYDND_HELPY Reviewed; 577 AA. AC P56459; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; DE EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044}; DE AltName: Full=Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; DE Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044}; DE AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; DE Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044}; GN Name=aspS {ECO:0000255|HAMAP-Rule:MF_00044}; GN OrderedLocusNames=HP_0617; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION AS A NON-DISCRIMINATING ASPRS, CATALYTIC ACTIVITY, SUBSTRATE RP SPECIFICITY, KINETIC PARAMETERS, AND MUTAGENESIS OF LEU-81 AND LEU-86. RC STRAIN=ATCC 700392 / 26695; RX PubMed=16800632; DOI=10.1021/bi060189c; RA Chuawong P., Hendrickson T.L.; RT "The nondiscriminating aspartyl-tRNA synthetase from Helicobacter RT pylori: anticodon-binding domain mutations that impact tRNA RT specificity and heterologous toxicity."; RL Biochemistry 45:8079-8087(2006). CC -!- FUNCTION: Aspartyl-tRNA synthetase with relaxed tRNA specificity CC since it is able to aspartylate not only its cognate tRNA(Asp) but CC also tRNA(Asn). Is 1.7 times more efficient at aminoacylating CC tRNA(Asp) over tRNA(Asn). Reaction proceeds in two steps: CC aspartate is first activated by ATP to form Asp-AMP and then CC transferred to the acceptor end of tRNA(Asp/Asn). CC {ECO:0000269|PubMed:16800632}. CC -!- CATALYTIC ACTIVITY: ATP + L-aspartate + tRNA(Asx) = AMP + CC diphosphate + L-aspartyl-tRNA(Asx). {ECO:0000255|HAMAP- CC Rule:MF_00044, ECO:0000269|PubMed:16800632}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.77 uM for tRNA(Asp) {ECO:0000269|PubMed:16800632}; CC KM=0.83 uM for tRNA(Asn) {ECO:0000269|PubMed:16800632}; CC Note=kcat is 0.022 sec(-1) for tRNA(Asp) aspartylation and 0.014 CC sec(-1) for tRNA(Asn) aspartylation.; CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00044}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00044}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00044}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07682.1; -; Genomic_DNA. DR PIR; A64597; A64597. DR RefSeq; NP_207412.1; NC_000915.1. DR RefSeq; WP_001256425.1; NC_018939.1. DR ProteinModelPortal; P56459; -. DR DIP; DIP-3174N; -. DR IntAct; P56459; 2. DR MINT; MINT-169373; -. DR STRING; 85962.HP0617; -. DR PaxDb; P56459; -. DR PRIDE; P56459; -. DR EnsemblBacteria; AAD07682; AAD07682; HP_0617. DR GeneID; 899997; -. DR KEGG; heo:C694_03190; -. DR KEGG; hpy:HP0617; -. DR PATRIC; 20592513; VBIHelPyl33062_0645. DR eggNOG; ENOG4105C9M; Bacteria. DR eggNOG; COG0173; LUCA. DR KO; K01876; -. DR OMA; YQLDVEM; -. DR OrthoDB; EOG68Q0NX; -. DR BioCyc; HPY:HP0617-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0050560; F:aspartate-tRNA(Asn) ligase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006418; P:tRNA aminoacylation for protein translation; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.30.1360.30; -; 1. DR HAMAP; MF_00044; Asp_tRNA_synth; 1. DR InterPro; IPR004364; aa-tRNA-synt_II. DR InterPro; IPR018150; aa-tRNA-synt_II-like. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004524; Asp-tRNA-ligase_bac/mit. DR InterPro; IPR002312; Asp/Asn-tRNA-synth_IIb. DR InterPro; IPR004115; GAD-like. DR InterPro; IPR029351; GAD_dom. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004365; NA-bd_OB_tRNA. DR PANTHER; PTHR22594; PTHR22594; 2. DR PANTHER; PTHR22594:SF5; PTHR22594:SF5; 2. DR Pfam; PF02938; GAD; 1. DR Pfam; PF00152; tRNA-synt_2; 1. DR Pfam; PF01336; tRNA_anti-codon; 1. DR PRINTS; PR01042; TRNASYNTHASP. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF55261; SSF55261; 1. DR TIGRFAMs; TIGR00459; aspS_bact; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 1: Evidence at protein level; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 577 Aspartate--tRNA(Asp/Asn) ligase. FT /FTId=PRO_0000110883. FT NP_BIND 217 219 ATP. {ECO:0000255|HAMAP-Rule:MF_00044}. FT NP_BIND 526 529 ATP. {ECO:0000255|HAMAP-Rule:MF_00044}. FT REGION 195 198 Aspartate. {ECO:0000255|HAMAP- FT Rule:MF_00044}. FT BINDING 171 171 Aspartate. {ECO:0000255|HAMAP- FT Rule:MF_00044}. FT BINDING 217 217 Aspartate. {ECO:0000255|HAMAP- FT Rule:MF_00044}. FT BINDING 226 226 ATP. {ECO:0000255|HAMAP-Rule:MF_00044}. FT BINDING 444 444 Aspartate. {ECO:0000255|HAMAP- FT Rule:MF_00044}. FT BINDING 474 474 ATP. {ECO:0000255|HAMAP-Rule:MF_00044}. FT BINDING 481 481 Aspartate. {ECO:0000255|HAMAP- FT Rule:MF_00044}. FT SITE 30 30 Important for tRNA non-discrimination. FT {ECO:0000255|HAMAP-Rule:MF_00044}. FT SITE 80 80 Important for tRNA non-discrimination. FT {ECO:0000255|HAMAP-Rule:MF_00044}. FT MUTAGEN 81 81 L->N: Enhances enzyme specificity for FT tRNA(Asp) over tRNA(Asn), by reducing FT enzyme's ability to misacylate tRNA(Asn). FT {ECO:0000269|PubMed:16800632}. FT MUTAGEN 86 86 L->M: Enhances enzyme specificity for FT tRNA(Asp) over tRNA(Asn), by reducing FT enzyme's ability to misacylate tRNA(Asn). FT {ECO:0000269|PubMed:16800632}. SQ SEQUENCE 577 AA; 65602 MW; 29963C376EE9E68F CRC64; MRSHFCTEIS EKDVGKIVKV AGWCNTYRDH GGVVFIDLRD KSGLVQLVCD PSSKAYEKAL EVRSEFVLVA KGKVRLRGAG LENPKLKTGK IEIVLEELII ENKSATPPIE IGNKHVNEDL RLKYRYLDLR SPNSYEIFKL RSEVALITRN TLAQKGFLEI ETPILSKTTP EGARDYLVPS RVHEGEFFAL PQSPQLFKQL LMVGGMDRYF QIARCFRDED LRADRQPEFT QIDAEMSFCD ENDVMGVVED LLQEIFKAVG HTISKPFKRM PYKEAMENYG SDKPDLRFEL PLIEVGDCFR DSSNAIFSNT AKDPKNKRIK ALNVKGADAL FSRSVLKELE EFVRQFGAKG LAYLQIKEDE IKGPLVKFLS EKGLKNILER TDAQVGDIVF FGAGDKKIVL DYMGRLRLKV AETLDLIDKD ALNFLWVVNF PMFEKTENGY HAAHHPFTMP KNIECEDIEE VEAHAYDVVL NGVELGGGSI RIHKEEMQKK VFEKINIHEE EAQKKFGFLL EALKFGAPPH GGFAIGFDRL IMLMTKSHSI RDVIAFPKTQ KASCLLTNAP SPINEEQLRE LHIRLRK // ID SYGB_HELPY Reviewed; 701 AA. AC P56454; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Glycine--tRNA ligase beta subunit; DE EC=6.1.1.14; DE AltName: Full=Glycyl-tRNA synthetase beta subunit; DE Short=GlyRS; GN Name=glyS; OrderedLocusNames=HP_0972; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + glycine + tRNA(Gly) = AMP + diphosphate CC + glycyl-tRNA(Gly). CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08014.1; -; Genomic_DNA. DR PIR; D64641; D64641. DR RefSeq; NP_207763.1; NC_000915.1. DR RefSeq; WP_000555186.1; NC_018939.1. DR ProteinModelPortal; P56454; -. DR IntAct; P56454; 2. DR STRING; 85962.HP0972; -. DR PaxDb; P56454; -. DR PRIDE; P56454; -. DR EnsemblBacteria; AAD08014; AAD08014; HP_0972. DR GeneID; 899504; -. DR KEGG; heo:C694_05005; -. DR KEGG; hpy:HP0972; -. DR PATRIC; 20593257; VBIHelPyl33062_1010. DR eggNOG; ENOG4105C38; Bacteria. DR eggNOG; COG0751; LUCA. DR KO; K01879; -. DR OMA; LPIPKRM; -. DR OrthoDB; EOG661H9S; -. DR BioCyc; HPY:HP0972-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004820; F:glycine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006426; P:glycyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00255; Gly_tRNA_synth_beta; 1. DR InterPro; IPR015944; Gly-tRNA-synth_bsu. DR InterPro; IPR006194; Gly-tRNA-synth_heterodimer. DR Pfam; PF02092; tRNA_synt_2f; 1. DR PRINTS; PR01045; TRNASYNTHGB. DR TIGRFAMs; TIGR00211; glyS; 1. DR PROSITE; PS50861; AA_TRNA_LIGASE_II_GLYAB; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 701 Glycine--tRNA ligase beta subunit. FT /FTId=PRO_0000072906. SQ SEQUENCE 701 AA; 80635 MW; 70651DD7AD5F508B CRC64; MHSDELLVEI LVEELPAQAL LNEYKEMPKK LHALFNKRAL EVGNIEIFYT PRRLCLLIKD FPLLTQETKE EFFGPPVKIA CNHQDKTQGL NALGLGFYQK LGLKDHQYFQ TAFKNNKEVL YHAKIHEKEP TKDLIMPIVL EFLEGLNFGK SMRWGNVEKS FIRPIHNICV LFNGEDFSGI EVKEYGFKTK QATKVHRQEG FDFIQVDSPK AYFEVLEKNH VILDPKKREA KILQEIKELE TKHHIIVETD RDLLDEVVAI TEYPSALLGE FDKAFLKLPS EIIITSMKEN QRYFATFCQK SQEESPTLHN GFIVVSNAIN KDKQKIILGN QKVLKARLSD AVFFYENDLK KPLDNAPLES VVFVQGLGTL KDKMERESII AQYLTQKYIS SLNMPLEKAL ELVKRAVQIA KADLLSEVVY EFSELQGIMG YYYALKQNEN ELVALSVKEQ YLPASENAPL PSSVFSSIVA LSLKLDSLFS LFSVGKIPSG SKDPFALRRL SFGLLKIIAH YGLEFDLKAD LKNLFQKVGV YQSFDLEILE KFLLERFHNL IDCNPSIIRS VLNTNERDIV KIIQKVKALK RFLDDPKNAQ KKELLFSAFK RLANINKDRN PNESSEFSTN LFKEPKEHAL FEAFNAIKMN AFESLDSKIE AYFGLHAPLE EYFKSVLVMD KDIEIQKNRK NFLWGVYQSF LEIGDIKEIA I // ID SYM_HELPY Reviewed; 650 AA. AC P56127; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 112. DE RecName: Full=Methionine--tRNA ligase; DE EC=6.1.1.10; DE AltName: Full=Methionyl-tRNA synthetase; DE Short=MetRS; GN Name=metG; OrderedLocusNames=HP_0417; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Is required not only for elongation of protein synthesis CC but also for the initiation of all mRNA translation through CC initiator tRNA(fMet) aminoacylation. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + L-methionine + tRNA(Met) = AMP + CC diphosphate + L-methionyl-tRNA(Met). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. MetG type 2A subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 tRNA-binding domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07483.1; -; Genomic_DNA. DR PIR; A64572; A64572. DR RefSeq; NP_207215.1; NC_000915.1. DR RefSeq; WP_001172573.1; NC_018939.1. DR ProteinModelPortal; P56127; -. DR DIP; DIP-3541N; -. DR IntAct; P56127; 1. DR MINT; MINT-169261; -. DR STRING; 85962.HP0417; -. DR PaxDb; P56127; -. DR PRIDE; P56127; -. DR EnsemblBacteria; AAD07483; AAD07483; HP_0417. DR GeneID; 899234; -. DR KEGG; heo:C694_02125; -. DR KEGG; hpy:HP0417; -. DR PATRIC; 20592085; VBIHelPyl33062_0432. DR eggNOG; ENOG4105CKH; Bacteria. DR eggNOG; COG0073; LUCA. DR eggNOG; COG0143; LUCA. DR KO; K01874; -. DR OMA; TRTSFEW; -. DR OrthoDB; EOG6CVV9B; -. DR BioCyc; HPY:HP0417-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004825; F:methionine-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0006431; P:methionyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_01228; Met_tRNA_synth_type2; 1. DR InterPro; IPR004495; Met-tRNA-synth_bsu_C. DR InterPro; IPR014758; Met-tRNA_synth. DR InterPro; IPR023457; Met-tRNA_synth_2. DR InterPro; IPR015413; Methionyl/Leucyl_tRNA_Synth. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR002547; tRNA-bd_dom. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR Pfam; PF09334; tRNA-synt_1g; 1. DR Pfam; PF01588; tRNA_bind; 1. DR PRINTS; PR01041; TRNASYNTHMET. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00398; metG; 1. DR TIGRFAMs; TIGR00399; metG_C_term; 1. DR PROSITE; PS50886; TRBD; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; RNA-binding; tRNA-binding; Zinc. FT CHAIN 1 650 Methionine--tRNA ligase. FT /FTId=PRO_0000139221. FT DOMAIN 549 650 tRNA-binding. FT MOTIF 11 21 "HIGH" region. FT MOTIF 301 305 "KMSKS" region. FT METAL 126 126 Zinc. {ECO:0000250}. FT METAL 129 129 Zinc. {ECO:0000250}. FT METAL 147 147 Zinc. {ECO:0000250}. FT METAL 150 150 Zinc. {ECO:0000250}. FT BINDING 304 304 ATP. {ECO:0000250}. SQ SEQUENCE 650 AA; 74507 MW; CEFDF457B9F75DD3 CRC64; MQKSLITTPI YYVNDIPHIG HAYTTLIADT LKKYYTLQGE EVFFLTGTDE HGQKIEQSAR LRNQSPKAYA DSISTIFKDQ WDFFNLDYDG FIRTTDSEHQ KCVQNAFEIM FEKGDIYKGA YSGYYCVSCE SYCAISKADN TNDKVLCPDC LRETTLLEEE SYFFRLSAYE KPLLDFYAKN PEAILPVYRK NEVTSFIEQG LLDLSITRTS FEWGIPLPKK MNDPKHVVYV WLDALLNYAS ALGYLNDLDN KMAHFECARH IVGKDILRFH AIYWPAFLMS LNLPLFKQLC VHGWWTIEGV KMSKSLGNVL DAQKIAMEYG IEELRYFLLR EVPFGQDGDF SKKALIERIN ANLNNDLGNL LNRLLGMAKK YFNHSLKSTK ITAYYSKELE KVHQILDNAN SFVPKMQLHK ALEELFNVYD FLNKLIAKEE PWVLHKNNES EKLEALLSLI ANALLQSSFL LYAFMPKSAV KLANAFNTEI TPDNYERFFK AKKLQDMILQ DTEPLFSKME KIEKTEKAGE ASPEKNEKEK KDAKEKAPLK QENYIGIEDF KKVEIKVGLI KEAQRIEKSN KLLRLKVDLG EGRLRQIISG IALDYEPESL VGQMVCVVAN LKPAKLMGEM SEGMILAVRD SDNLALISPT REKIAGSLIS // ID SYI_HELPY Reviewed; 920 AA. AC P56456; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Isoleucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02002}; DE EC=6.1.1.5 {ECO:0000255|HAMAP-Rule:MF_02002}; DE AltName: Full=Isoleucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02002}; DE Short=IleRS {ECO:0000255|HAMAP-Rule:MF_02002}; GN Name=ileS {ECO:0000255|HAMAP-Rule:MF_02002}; GN OrderedLocusNames=HP_1422; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of isoleucine to tRNA(Ile). As CC IleRS can inadvertently accommodate and process structurally CC similar amino acids such as valine, to avoid such errors it has CC two additional distinct tRNA(Ile)-dependent editing activities. CC One activity is designated as 'pretransfer' editing and involves CC the hydrolysis of activated Val-AMP. The other activity is CC designated 'posttransfer' editing and involves deacylation of CC mischarged Val-tRNA(Ile). {ECO:0000255|HAMAP-Rule:MF_02002}. CC -!- CATALYTIC ACTIVITY: ATP + L-isoleucine + tRNA(Ile) = AMP + CC diphosphate + L-isoleucyl-tRNA(Ile). {ECO:0000255|HAMAP- CC Rule:MF_02002}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_02002}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_02002}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02002}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02002}. CC -!- DOMAIN: IleRS has two distinct active sites: one for CC aminoacylation and one for editing. The misactivated valine is CC translocated from the active site to the editing site, which CC sterically excludes the correctly activated isoleucine. The single CC editing site contains two valyl binding pockets, one specific for CC each substrate (Val-AMP or Val-tRNA(Ile)). {ECO:0000255|HAMAP- CC Rule:MF_02002}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. IleS type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_02002}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08464.1; -; Genomic_DNA. DR PIR; F64697; F64697. DR RefSeq; NP_208213.1; NC_000915.1. DR RefSeq; WP_000393434.1; NC_000915.1. DR ProteinModelPortal; P56456; -. DR DIP; DIP-3571N; -. DR IntAct; P56456; 3. DR MINT; MINT-187219; -. DR STRING; 85962.HP1422; -. DR PaxDb; P56456; -. DR PRIDE; P56456; -. DR EnsemblBacteria; AAD08464; AAD08464; HP_1422. DR GeneID; 899873; -. DR KEGG; hpy:HP1422; -. DR PATRIC; 20594243; VBIHelPyl33062_1491. DR eggNOG; ENOG4105C07; Bacteria. DR eggNOG; COG0060; LUCA. DR KO; K01870; -. DR OMA; THGFIVD; -. DR OrthoDB; EOG644ZM1; -. DR BioCyc; HPY:HP1422-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004822; F:isoleucine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006428; P:isoleucyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 1. DR HAMAP; MF_02002; Ile_tRNA_synth_type1; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR002301; Ile-tRNA-ligase. DR InterPro; IPR023585; Ile-tRNA-ligase_type1. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF00133; tRNA-synt_1; 1. DR PRINTS; PR00984; TRNASYNTHILE. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 1. DR TIGRFAMs; TIGR00392; ileS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 920 Isoleucine--tRNA ligase. FT /FTId=PRO_0000098398. FT MOTIF 58 68 "HIGH" region. FT MOTIF 610 614 "KMSKS" region. FT METAL 895 895 Zinc. {ECO:0000255|HAMAP-Rule:MF_02002}. FT METAL 898 898 Zinc. {ECO:0000255|HAMAP-Rule:MF_02002}. FT METAL 910 910 Zinc. {ECO:0000255|HAMAP-Rule:MF_02002}. FT METAL 913 913 Zinc. {ECO:0000255|HAMAP-Rule:MF_02002}. FT BINDING 569 569 Aminoacyl-adenylate. {ECO:0000255|HAMAP- FT Rule:MF_02002}. FT BINDING 613 613 ATP. {ECO:0000255|HAMAP-Rule:MF_02002}. SQ SEQUENCE 920 AA; 106079 MW; E6AFE8C21D84C69A CRC64; MEEYKDTLNL NTTTFSMKGN LSVNEPKTYA KWQEQQAFKR MQARKDNHGD FTLHDGPPYA NGHLHLGHAL NKILKDIVVK REYFKGKKIY YTPGWDCHGL PIEQQILERL EKEKTSLENP TLFREKCRDH AKKFLEIQKN EFLQLGVLGD FEDPYKTMDF KFEASIYRAL VEVAKKGLLK ERHKPIYWSY ACESALAEAE VEYKMKKSPS IFVAFGLKKE SLEKLKVKKA SLVIWTTTPW TLYANVAIAL KKDAVYALTQ KGYLVAKALH EKLAALGVVD NEITHEFNSN DLEYLVATNP LNQRDSLVAL GEHVGLEDGT GAVHTAPGHG EEDYYLGLRY NLEVLMSVDE KGCYDEGIIH NQLLDESYLG EHVFKAQKRI IEQLGDSLLL EQEIEHSYPH CWRTHKPVIY RATTQWFILM DEPFIQNDGS QKTLREVALD AIEKVEFVPS SGKNRLKTMI ENRPDWCLSR QRKWGVPLAF FIDKRTNKPC FESEVLEHVA NLFEKKGCDV WWEYSVKDLL PPSYQEDAKH YEKIMHILDV WFDSGSTFKA VLEDYHGEKG QSPSDVILEG SDQHRGWFQS SLLIGCVLNN QAPFKKVITH GFIVDEKGEK MSKSKGNVVS LDKLLKTHGS DVVRLWVAFN DYQNDLRVSQ TFFTQTEQHY KKFRNTLKFL LANFSDMDLK NLERPHNFSP LDHFMLETLE TISAGVNSAF EEHDFVKGLN ILMAFVTNEL SGIYLDACKD SLYCDSKNNE KRQAIQMVLL ATASKLCYFL APILTHTIEE VLEHSQALRI FLQAKDVFDL KDISVSEKLH LKEFKKPENF EAVLALRSAF NEELDRLKKE GVIKNSLECA IEVKEKALDE NLVEELLMVS FVGIAKEKLS ETPAFTLFKA PFYKCPRCWR FKSELENTPC KRCEQVLKER // ID SYFB_HELPY Reviewed; 764 AA. AC P56145; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 110. DE RecName: Full=Phenylalanine--tRNA ligase beta subunit; DE EC=6.1.1.20; DE AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; DE Short=PheRS; GN Name=pheT; OrderedLocusNames=HP_0402; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-phenylalanine + tRNA(Phe) = AMP + CC diphosphate + L-phenylalanyl-tRNA(Phe). CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Note=Binds 2 magnesium ions per tetramer. {ECO:0000250}; CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the phenylalanyl-tRNA synthetase beta CC subunit family. Type 1 subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 B5 domain. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 FDX-ACB domain. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 tRNA-binding domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07471.1; -; Genomic_DNA. DR PIR; B64570; B64570. DR RefSeq; NP_207200.1; NC_000915.1. DR RefSeq; WP_000777286.1; NC_018939.1. DR ProteinModelPortal; P56145; -. DR DIP; DIP-3416N; -. DR IntAct; P56145; 7. DR MINT; MINT-161099; -. DR STRING; 85962.HP0402; -. DR PaxDb; P56145; -. DR PRIDE; P56145; -. DR EnsemblBacteria; AAD07471; AAD07471; HP_0402. DR GeneID; 899228; -. DR KEGG; heo:C694_02040; -. DR KEGG; hpy:HP0402; -. DR PATRIC; 20592043; VBIHelPyl33062_0415. DR eggNOG; ENOG4105C6A; Bacteria. DR eggNOG; COG0072; LUCA. DR eggNOG; COG0073; LUCA. DR KO; K01890; -. DR OMA; MKFSEQW; -. DR OrthoDB; EOG6CCH1J; -. DR BioCyc; HPY:HP0402-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004826; F:phenylalanine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006432; P:phenylalanyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR GO; GO:0008033; P:tRNA processing; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 2. DR Gene3D; 3.30.56.20; -; 1. DR Gene3D; 3.30.70.380; -; 1. DR HAMAP; MF_00283; Phe_tRNA_synth_beta1; 1. DR InterPro; IPR009061; DNA-bd_dom_put. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004532; Phe-tRNA-ligase_IIc_bsu. DR InterPro; IPR005121; PheS_beta_Fdx_antiC-bd. DR InterPro; IPR002547; tRNA-bd_dom. DR InterPro; IPR005147; tRNA_synthase_B5-dom. DR Pfam; PF03484; B5; 1. DR Pfam; PF03147; FDX-ACB; 1. DR Pfam; PF01588; tRNA_bind; 1. DR SMART; SM00874; B5; 1. DR SMART; SM00896; FDX-ACB; 1. DR SUPFAM; SSF46955; SSF46955; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF54991; SSF54991; 1. DR TIGRFAMs; TIGR00472; pheT_bact; 1. DR PROSITE; PS51483; B5; 1. DR PROSITE; PS51447; FDX_ACB; 1. DR PROSITE; PS50886; TRBD; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Metal-binding; Nucleotide-binding; KW Protein biosynthesis; Reference proteome; RNA-binding; tRNA-binding. FT CHAIN 1 764 Phenylalanine--tRNA ligase beta subunit. FT /FTId=PRO_0000126893. FT DOMAIN 38 148 tRNA-binding. FT DOMAIN 375 455 B5. FT DOMAIN 673 763 FDX-ACB. FT METAL 433 433 Magnesium. {ECO:0000250}. FT METAL 439 439 Magnesium; via carbonyl oxygen. FT {ECO:0000250}. FT METAL 442 442 Magnesium. {ECO:0000250}. FT METAL 443 443 Magnesium. {ECO:0000250}. SQ SEQUENCE 764 AA; 85136 MW; CE182690F7B30C68 CRC64; MKLSINDLNV FVNTPKDIAK LCEDLSRLGL EVESCIPCIA PKNVVVGKIL EKAPHKNAEK LSVCQVDVGK EVLQIVCGAK NVAPNQFVPV ALNGALIGST TIAKTELRGV ESHGMICSSI ELGFPKINDG ILELDESVGE LVLGKELNEY APFNTHVLEI SLTPNRGDCL SVLGIAREIS AFYHTPLKPI KALNFTPKSG LITLSAGENI ESHLAYYLIC NHSLKTPLNI KLSLAHNNAL SENDLNNFIE FSTHFSGVIM NAYSLNTTPM DLSVKNDENN LESVYINHQK RSTIAIKHQV QKDLSECLLL EASYTDPISL SLKLHALKDK TLQKDNALIY RSARGSNPNL SDGLNFLSAH LKATILESKQ TEHSLKDRTL TFQLEDITEI LGLAVEKEKI QGILKNLGFK VSVKEPNSKP QILEVIAPNF RHDIKTIQDI AEEILRFVGI DNLVSKPLHC VSSKNSNPNY DTHRFFENLK HKALACGFKE VIHYVFYSKE KQQKLGFEVL EDPLELQNPI TTELNTLRTS LVCGLLDASL RNKNLGFKSI ALYEKGSVYN SKREEIQKLG FLISGLQKKE SYPDTKGKAW DFYSFAECVS KVIGDFSLEK LTTQTPINHP YQSAKIIQNH EIIGVIAKIH PKVIQELDLF ESYYAEIDAF KLKRPAMLLK PFSIYPSSVR DLTLIIDENT AFSGIKKALK DAQIPNLSEI LPLDIFKESN NSIALSVRCV IHSLEKTLND EEVNSAVQKA LEILEKEFNA RLKG // ID TAL_HELPY Reviewed; 316 AA. AC P56108; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 09-DEC-2015, entry version 97. DE RecName: Full=Transaldolase; DE EC=2.2.1.2; GN Name=tal; OrderedLocusNames=HP_1495; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Transaldolase is important for the balance of CC metabolites in the pentose-phosphate pathway. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Sedoheptulose 7-phosphate + D-glyceraldehyde CC 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate. CC -!- PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D- CC glyceraldehyde 3-phosphate and beta-D-fructose 6-phosphate from D- CC ribose 5-phosphate and D-xylulose 5-phosphate (non-oxidative CC stage): step 2/3. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the transaldolase family. Type 2 subfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08536.1; -; Genomic_DNA. DR PIR; G64706; G64706. DR RefSeq; NP_208286.1; NC_000915.1. DR RefSeq; WP_001155041.1; NC_018939.1. DR ProteinModelPortal; P56108; -. DR STRING; 85962.HP1495; -. DR PaxDb; P56108; -. DR PRIDE; P56108; -. DR EnsemblBacteria; AAD08536; AAD08536; HP_1495. DR GeneID; 899796; -. DR KEGG; heo:C694_07745; -. DR KEGG; hpy:HP1495; -. DR PATRIC; 20594401; VBIHelPyl33062_1569. DR eggNOG; ENOG4107V25; Bacteria. DR eggNOG; COG0176; LUCA. DR KO; K00616; -. DR OMA; ALCFKNS; -. DR OrthoDB; EOG6T1WSN; -. DR BioCyc; HPY:HP1495-MONOMER; -. DR UniPathway; UPA00115; UER00414. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004801; F:sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00493; Transaldolase_2; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR001585; TAL/FSA. DR InterPro; IPR004732; Transaldolase_2. DR InterPro; IPR018225; Transaldolase_AS. DR PANTHER; PTHR10683; PTHR10683; 1. DR Pfam; PF00923; Transaldolase; 1. DR PIRSF; PIRSF036915; Trnald_Bac_Plnt; 1. DR TIGRFAMs; TIGR00876; tal_mycobact; 1. DR PROSITE; PS01054; TRANSALDOLASE_1; 1. DR PROSITE; PS00958; TRANSALDOLASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Pentose shunt; Reference proteome; KW Schiff base; Transferase. FT CHAIN 1 316 Transaldolase. FT /FTId=PRO_0000173631. FT ACT_SITE 127 127 Schiff-base intermediate with substrate. FT {ECO:0000250}. SQ SEQUENCE 316 AA; 35195 MW; 8CC7A0832EA657CD CRC64; MQEFSLWCDF IERDFLENDF LKLINKGAIC GATSNPSLFC EAITKSAFYK DEIAKLKGKK AKEIYETLAL KDILQASSAL MPLYEKDPNN GYISLEIDPF LEDDAAKSID EAKRLFKTLN RPNVMIKVPA SESGIEVVSA LTQASIPVNV TLVFSPKIAG EIAQILAKEA QKRAVISVFV SRFDKEIDPL VPKNLQAQSG IINATECYYQ INQHANKLTS TLFASTGVKS NSLAKDYYIK ALCFKNSINT APLEALNAYL LDPNTECQTP LKTTEIEAFK KELKVHNIDL ENTAQKLLKE GLIAFKQSFE KLLSSF // ID SYT_HELPY Reviewed; 612 AA. AC P56071; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=Threonine--tRNA ligase; DE EC=6.1.1.3; DE AltName: Full=Threonyl-tRNA synthetase; DE Short=ThrRS; GN Name=thrS; OrderedLocusNames=HP_0123; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-threonine + tRNA(Thr) = AMP + CC diphosphate + L-threonyl-tRNA(Thr). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07192.1; -; Genomic_DNA. DR PIR; C64535; C64535. DR RefSeq; NP_206923.1; NC_000915.1. DR RefSeq; WP_001271855.1; NC_018939.1. DR ProteinModelPortal; P56071; -. DR DIP; DIP-3171N; -. DR IntAct; P56071; 3. DR MINT; MINT-166314; -. DR STRING; 85962.HP0123; -. DR PaxDb; P56071; -. DR PRIDE; P56071; -. DR EnsemblBacteria; AAD07192; AAD07192; HP_0123. DR GeneID; 900156; -. DR KEGG; heo:C694_00610; -. DR KEGG; hpy:HP0123; -. DR PATRIC; 20591463; VBIHelPyl33062_0131. DR eggNOG; ENOG4105C22; Bacteria. DR eggNOG; COG0441; LUCA. DR KO; K01868; -. DR OMA; FYYDFAY; -. DR OrthoDB; EOG61KBFJ; -. DR BioCyc; HPY:HP0123-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004829; F:threonine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006435; P:threonyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.800; -; 1. DR HAMAP; MF_00184; Thr_tRNA_synth; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR002320; Thr-tRNA-ligase_IIa. DR InterPro; IPR018163; Thr/Ala-tRNA-synth_IIc_edit. DR InterPro; IPR012947; tRNA_SAD. DR Pfam; PF03129; HGTP_anticodon; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR Pfam; PF07973; tRNA_SAD; 1. DR PRINTS; PR01047; TRNASYNTHTHR. DR SMART; SM00863; tRNA_SAD; 1. DR SUPFAM; SSF52954; SSF52954; 1. DR SUPFAM; SSF55186; SSF55186; 1. DR TIGRFAMs; TIGR00418; thrS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 612 Threonine--tRNA ligase. FT /FTId=PRO_0000100989. FT REGION 218 509 Catalytic. FT METAL 310 310 Zinc; catalytic. {ECO:0000250}. FT METAL 361 361 Zinc; catalytic. {ECO:0000250}. FT METAL 486 486 Zinc; catalytic. {ECO:0000250}. SQ SEQUENCE 612 AA; 70240 MW; 47FEF701E389AC01 CRC64; MSAELIAVYK DEQIIDLESA KVLGLSDGIK ALNGTEPIYF DDSPLALEVI RHSCAHLLAQ SLKALYPDAK FFVGPVVEEG FYYDFKTSSK ISEEDLPKIE AKMKEFAKLK LAITKETLTR EQALERFKGD ELKHAVMSKI GGDAFGVYQQ GEFEDLCKGP HLPNTRFLNH FKLTKLAGAY LGGDENNEML IRIYGIAFAT KEGLKDYLFQ IEEAKKRDHR KLGVELGLFS FDDEIGAGLP LWLPKGARLR KRIEDLLSQA LLLRGYEPVK GPEILKSDVW KISGHYDNYK ENMYFTTIDE QEYGIKPMNC VGHIKVYQSA LHSYRDLPLR FYEYGVVHRH EKSGVLHGLL RVREFTQDDA HIFCSFEQIQ SEVSAILDFT HKIMQAFDFS YEMELSTRPA KSIGDDKVWE KATNALKEAL KEHRIDYKID EGGGAFYGPK IDIKITDALK RKWQCGTIQV DMNLPERFKL AFTNEYNHAE QPVMIHRAIL GSFERFIAIL SEHFGGNFPF FVAPTQIALI PINEEHHVFA LKLKEALKKR DIFVEVLDKN DSLNKKVRLA EKQKIPMILV LGNEEVETEI LSIRDREKQD QYKMPLKEFL NMVESKMQEV SF // ID SYY_HELPY Reviewed; 402 AA. AC P56417; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Tyrosine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02007}; DE EC=6.1.1.1 {ECO:0000255|HAMAP-Rule:MF_02007}; DE AltName: Full=Tyrosyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02007}; DE Short=TyrRS {ECO:0000255|HAMAP-Rule:MF_02007}; GN Name=tyrS {ECO:0000255|HAMAP-Rule:MF_02007}; GN OrderedLocusNames=HP_0774; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a CC two-step reaction: tyrosine is first activated by ATP to form Tyr- CC AMP and then transferred to the acceptor end of tRNA(Tyr). CC {ECO:0000255|HAMAP-Rule:MF_02007}. CC -!- CATALYTIC ACTIVITY: ATP + L-tyrosine + tRNA(Tyr) = AMP + CC diphosphate + L-tyrosyl-tRNA(Tyr). {ECO:0000255|HAMAP- CC Rule:MF_02007}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_02007}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02007}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. TyrS type 2 subfamily. {ECO:0000255|HAMAP-Rule:MF_02007}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. {ECO:0000255|HAMAP- CC Rule:MF_02007}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07821.1; -; Genomic_DNA. DR PIR; F64616; F64616. DR RefSeq; NP_207567.1; NC_000915.1. DR RefSeq; WP_000435642.1; NC_018939.1. DR ProteinModelPortal; P56417; -. DR DIP; DIP-3355N; -. DR IntAct; P56417; 1. DR MINT; MINT-183259; -. DR STRING; 85962.HP0774; -. DR PaxDb; P56417; -. DR PRIDE; P56417; -. DR EnsemblBacteria; AAD07821; AAD07821; HP_0774. DR GeneID; 899535; -. DR KEGG; heo:C694_03975; -. DR KEGG; hpy:HP0774; -. DR PATRIC; 20592837; VBIHelPyl33062_0807. DR eggNOG; ENOG4105DA0; Bacteria. DR eggNOG; COG0162; LUCA. DR KO; K01866; -. DR OMA; DMFGKVM; -. DR OrthoDB; EOG6B09VR; -. DR BioCyc; HPY:HP0774-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0004831; F:tyrosine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006437; P:tyrosyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.290.10; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_02007; Tyr_tRNA_synth_type2; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002305; aa-tRNA-synth_Ic. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR002942; S4_RNA-bd. DR InterPro; IPR002307; Tyr-tRNA-ligase. DR InterPro; IPR024088; Tyr-tRNA-ligase_bac-type. DR InterPro; IPR024108; Tyr-tRNA-ligase_bac_2. DR PANTHER; PTHR11766; PTHR11766; 1. DR Pfam; PF01479; S4; 1. DR Pfam; PF00579; tRNA-synt_1b; 1. DR PRINTS; PR01040; TRNASYNTHTYR. DR SMART; SM00363; S4; 1. DR TIGRFAMs; TIGR00234; tyrS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome; KW RNA-binding. FT CHAIN 1 402 Tyrosine--tRNA ligase. FT /FTId=PRO_0000055655. FT DOMAIN 341 401 S4 RNA-binding. {ECO:0000255|HAMAP- FT Rule:MF_02007}. FT MOTIF 47 56 "HIGH" region. FT MOTIF 232 236 "KMSKS" region. FT BINDING 235 235 ATP. {ECO:0000255|HAMAP-Rule:MF_02007}. SQ SEQUENCE 402 AA; 45739 MW; 096C99845F9DE3B0 CRC64; MEQKIAIALK EIARGTNEII GLEYIEKLVR KYYETNERFI VKAGFDPTAP DLHLGHTVLI QKLALLQQYG ARVKFLIGDF TAMIGDPTGK NETRKPLNRE QVLENAKTYE EQIYKILDEK HTEVCFNSTW LDALGAKGMI ELCAKFSVAR MLERDDFTKR YKENRPISIV EFLYPLLQGY DSVAMDADIE LGGNDQKFNL LVGRFLQRAY GLNKEQSVIT MPLLEGLDGV QKMSKSLGNY VGITEEPNAM FGKIMSVSDD LMWRYYTLLS TKTLEEIEDL KHGILNQTLH PKAVKEDLAS EIVARYYDND QAIKAKEQFS KVFSANLLPE ILSESDFDEG VGILDVLKQI GFCPSTSQAR RDIQGGGVKI NQEVIKNESY RFVKGNYVIQ LGKKRFMKLN IN // ID TATA_HELPY Reviewed; 79 AA. AC O25088; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 90. DE RecName: Full=Sec-independent protein translocase protein TatA {ECO:0000255|HAMAP-Rule:MF_00236}; GN Name=tatA {ECO:0000255|HAMAP-Rule:MF_00236}; GN OrderedLocusNames=HP_0320; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the twin-arginine translocation (Tat) system CC that transports large folded proteins containing a characteristic CC twin-arginine motif in their signal peptide across membranes. TatA CC could form the protein-conducting channel of the Tat system. CC {ECO:0000255|HAMAP-Rule:MF_00236}. CC -!- SUBUNIT: The Tat system comprises two distinct complexes: a TatABC CC complex, containing multiple copies of TatA, TatB and TatC CC subunits, and a separate TatA complex, containing only TatA CC subunits. Substrates initially bind to the TatABC complex, which CC probably triggers association of the separate TatA complex to form CC the active translocon. {ECO:0000255|HAMAP-Rule:MF_00236}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00236}; Single-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00236}. CC -!- SIMILARITY: Belongs to the TatA/E family. {ECO:0000255|HAMAP- CC Rule:MF_00236}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07397.1; -; Genomic_DNA. DR PIR; H64559; H64559. DR RefSeq; NP_207118.1; NC_000915.1. DR RefSeq; WP_000508588.1; NC_018939.1. DR ProteinModelPortal; O25088; -. DR IntAct; O25088; 1. DR STRING; 85962.HP0320; -. DR PaxDb; O25088; -. DR PRIDE; O25088; -. DR EnsemblBacteria; AAD07397; AAD07397; HP_0320. DR GeneID; 899046; -. DR KEGG; heo:C694_01620; -. DR KEGG; hpy:HP0320; -. DR PATRIC; 20591871; VBIHelPyl33062_0333. DR eggNOG; ENOG41067S4; Bacteria. DR eggNOG; ENOG410XUF0; LUCA. DR KO; K03116; -. DR OMA; FEQKKQV; -. DR OrthoDB; EOG6WQD34; -. DR BioCyc; HPY:HP0320-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0033281; C:TAT protein transport complex; IEA:UniProtKB-HAMAP. DR GO; GO:0008320; F:protein transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR GO; GO:0043953; P:protein transport by the Tat complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00236; TatA_E; 1. DR InterPro; IPR003369; TatA/B/E. DR InterPro; IPR006312; TatA/E. DR Pfam; PF02416; MttA_Hcf106; 1. DR TIGRFAMs; TIGR01411; tatAE; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 79 Sec-independent protein translocase FT protein TatA. FT /FTId=PRO_0000097939. FT TRANSMEM 1 21 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00236}. SQ SEQUENCE 79 AA; 8722 MW; CE599ACA02AA5E8F CRC64; MGGFTSIWHW VIVLLVIVLL FGAKKIPELA KGLGSGIKNF KKAVKDDEEE AKNEPKTLDA QATQTKVHES SEIKSKQES // ID SYS_HELPY Reviewed; 415 AA. AC P56458; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Serine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00176}; DE EC=6.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00176}; DE AltName: Full=Seryl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; DE Short=SerRS {ECO:0000255|HAMAP-Rule:MF_00176}; DE AltName: Full=Seryl-tRNA(Ser/Sec) synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; GN Name=serS {ECO:0000255|HAMAP-Rule:MF_00176}; GN OrderedLocusNames=HP_1480; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of serine to tRNA(Ser). Is also CC able to aminoacylate tRNA(Sec) with serine, to form the CC misacylated tRNA L-seryl-tRNA(Sec), which will be further CC converted into selenocysteinyl-tRNA(Sec). {ECO:0000255|HAMAP- CC Rule:MF_00176}. CC -!- CATALYTIC ACTIVITY: ATP + L-serine + tRNA(Ser) = AMP + diphosphate CC + L-seryl-tRNA(Ser). {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- CATALYTIC ACTIVITY: ATP + L-serine + tRNA(Sec) = AMP + diphosphate CC + L-seryl-tRNA(Sec). {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- PATHWAY: Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) CC biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step CC 1/1. {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SUBUNIT: Homodimer. The tRNA molecule binds across the dimer. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- DOMAIN: Consists of two distinct domains, a catalytic core and a CC N-terminal extension that is involved in tRNA binding. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. Type-1 seryl-tRNA synthetase subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08517.1; -; Genomic_DNA. DR PIR; H64704; H64704. DR RefSeq; NP_208271.1; NC_000915.1. DR RefSeq; WP_000567145.1; NC_018939.1. DR ProteinModelPortal; P56458; -. DR STRING; 85962.HP1480; -. DR PaxDb; P56458; -. DR PRIDE; P56458; -. DR EnsemblBacteria; AAD08517; AAD08517; HP_1480. DR GeneID; 899812; -. DR KEGG; heo:C694_07665; -. DR KEGG; hpy:HP1480; -. DR PATRIC; 20594371; VBIHelPyl33062_1554. DR eggNOG; ENOG4105CGR; Bacteria. DR eggNOG; COG0172; LUCA. DR KO; K01875; -. DR OMA; NAMDDEL; -. DR OrthoDB; EOG61KBH9; -. DR BioCyc; HPY:HP1480-MONOMER; -. DR UniPathway; UPA00906; UER00895. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004828; F:serine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016260; P:selenocysteine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0097056; P:selenocysteinyl-tRNA(Sec) biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006434; P:seryl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.40; -; 1. DR HAMAP; MF_00176; Ser_tRNA_synth_type1; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR002317; Ser-tRNA-ligase_type_1. DR InterPro; IPR015866; Ser-tRNA-synth_1_N. DR InterPro; IPR010978; tRNA-bd_arm. DR PANTHER; PTHR11778; PTHR11778; 1. DR Pfam; PF02403; Seryl_tRNA_N; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR PIRSF; PIRSF001529; Ser-tRNA-synth_IIa; 1. DR PRINTS; PR00981; TRNASYNTHSER. DR SUPFAM; SSF46589; SSF46589; 1. DR TIGRFAMs; TIGR00414; serS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 415 Serine--tRNA ligase. FT /FTId=PRO_0000122059. FT NP_BIND 262 264 ATP. {ECO:0000255|HAMAP-Rule:MF_00176}. FT NP_BIND 349 352 ATP. {ECO:0000255|HAMAP-Rule:MF_00176}. FT REGION 231 233 Serine binding. {ECO:0000255|HAMAP- FT Rule:MF_00176}. FT BINDING 285 285 Serine. {ECO:0000255|HAMAP- FT Rule:MF_00176}. FT BINDING 383 383 Serine. {ECO:0000255|HAMAP- FT Rule:MF_00176}. SQ SEQUENCE 415 AA; 47444 MW; A7628BA52B5BDCFE CRC64; MIDRKLLLQD FDKVALSLKK RNNAMDDELE RLREVITHYK KRLIELEGLQ AFQNKVSKEF GIKMAQKVDT SDLKKELENN KIKLNELSKS VGELEQQIDL KLSIIPNLVD EKTPLGTNEE DNIEIKKILT PRVFTFKPKE HFELAQQNGW IDFESGVKLA KSRFSVIRGF GAKIYRALIH LMLDFNEKNG FEIIYTPALV NEKMLFGTGQ LPKFKEDVFK IENENLYLIP TAEVTLTNLY NDTIISVENL PIKMTAHTPC FRSEAGSAGK DTRGMIRQHQ FDKVELVAIT HPKESDVMQE HMLESASEIL KALELPHRFV QLCSGDLGFS ASNTIDIEVW LPGQNCYREI SSVSNTRDFQ ARRAKIRFKE NQKNQLAHTL NGSSLAVGRT MVALMENHQQ ADGSIHIPKA LEKYL // ID SYR_HELPY Reviewed; 541 AA. AC P56128; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 103. DE RecName: Full=Arginine--tRNA ligase; DE EC=6.1.1.19; DE AltName: Full=Arginyl-tRNA synthetase; DE Short=ArgRS; GN Name=argS; OrderedLocusNames=HP_0319; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-arginine + tRNA(Arg) = AMP + CC diphosphate + L-arginyl-tRNA(Arg). CC -!- SUBUNIT: Monomer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07388.1; -; Genomic_DNA. DR PIR; G64559; G64559. DR RefSeq; NP_207117.1; NC_000915.1. DR RefSeq; WP_000557124.1; NC_018939.1. DR ProteinModelPortal; P56128; -. DR DIP; DIP-3643N; -. DR IntAct; P56128; 2. DR MINT; MINT-169291; -. DR STRING; 85962.HP0319; -. DR PaxDb; P56128; -. DR PRIDE; P56128; -. DR EnsemblBacteria; AAD07388; AAD07388; HP_0319. DR GeneID; 900101; -. DR KEGG; heo:C694_01615; -. DR KEGG; hpy:HP0319; -. DR PATRIC; 20591869; VBIHelPyl33062_0332. DR eggNOG; ENOG4105C75; Bacteria. DR eggNOG; COG0018; LUCA. DR KO; K01887; -. DR OMA; FLERSTQ; -. DR OrthoDB; EOG6JB13C; -. DR BioCyc; HPY:HP0319-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004814; F:arginine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006420; P:arginyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.30.1360.70; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00123; Arg_tRNA_synth; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR001278; Arg-tRNA-ligase. DR InterPro; IPR005148; Arg-tRNA-synth_N. DR InterPro; IPR008909; DALR_anticod-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR PANTHER; PTHR11956; PTHR11956; 1. DR Pfam; PF03485; Arg_tRNA_synt_N; 1. DR Pfam; PF05746; DALR_1; 1. DR Pfam; PF00750; tRNA-synt_1d; 1. DR PRINTS; PR01038; TRNASYNTHARG. DR SMART; SM01016; Arg_tRNA_synt_N; 1. DR SMART; SM00836; DALR_1; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF55190; SSF55190; 1. DR TIGRFAMs; TIGR00456; argS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 541 Arginine--tRNA ligase. FT /FTId=PRO_0000151565. FT MOTIF 119 129 "HIGH" region. SQ SEQUENCE 541 AA; 62077 MW; DAB18669FD03A866 CRC64; MHTLIKGILE EILEEEVIVE YPKDREHGHY ATPIAFNLAK VFKKSPLAIA EELALKISTH EKTQGLFDSV VACKGYINFT LSLDFLERFT QKALELKEKF GSQVKSERSQ KIFLEFVSAN PTGPLHIGHA RGAVFGDSLA KIARFLGHEV LCEYYVNDMG SQIRLLGLSV WLAYREHVLK ESVTYPEVFY KGEYIIEIAK KANNDLEPSL LKENEETIIE VLSGYARDLM LLEIKDNLDA LGIHFDSYAS EKEVFKHKDA VFEQLEKANA LYEKDSKIWL KSSLYQDESD RVLIKEDKSY TYLAGDIVYH DEKFKQDYTK YINIWGADHH GYIARVKASL EFLGYDSNKL EVLLAQMVRL LKDNEPYKMS KRAGNFILIK DVVDDVGKDA LRFIFLSKRL DTHLEFDVNT LKKQDSSNPI YYIHYANSRI HTMLEKSPFS KEEVLQTPLT NLNAEEKYLL FSALSLPKAI ESSFEEYGLQ KMCEYAKTLA SEFHRFYNAG KILDTPKAKE LLKICLIVSL SLSNAFKLLG IEIKTKISAR D // ID SYW_HELPY Reviewed; 326 AA. AC P56396; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 2. DT 20-JAN-2016, entry version 93. DE RecName: Full=Tryptophan--tRNA ligase; DE EC=6.1.1.2; DE AltName: Full=Tryptophanyl-tRNA synthetase; DE Short=TrpRS; GN Name=trpS; OrderedLocusNames=HP_1253; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + L-tryptophan + tRNA(Trp) = AMP + CC diphosphate + L-tryptophyl-tRNA(Trp). CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08297.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08297.1; ALT_INIT; Genomic_DNA. DR PIR; E64676; E64676. DR RefSeq; NP_208045.1; NC_000915.1. DR RefSeq; WP_000256560.1; NC_000915.1. DR RefSeq; WP_001862742.1; NC_018939.1. DR ProteinModelPortal; P56396; -. DR SMR; P56396; 4-326. DR STRING; 85962.HP1253; -. DR PaxDb; P56396; -. DR EnsemblBacteria; AAD08297; AAD08297; HP_1253. DR GeneID; 899025; -. DR KEGG; heo:C694_06475; -. DR KEGG; hpy:HP1253; -. DR PATRIC; 20593883; VBIHelPyl33062_1312. DR eggNOG; ENOG4105C31; Bacteria. DR eggNOG; COG0180; LUCA. DR KO; K01867; -. DR OMA; GWGQFKP; -. DR OrthoDB; EOG686NJQ; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004830; F:tryptophan-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006436; P:tryptophanyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00140_B; Trp_tRNA_synth_B; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002305; aa-tRNA-synth_Ic. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR002306; Trp-tRNA-ligase. DR InterPro; IPR024109; Trp-tRNA-ligase_bac-type. DR PANTHER; PTHR10055; PTHR10055; 1. DR Pfam; PF00579; tRNA-synt_1b; 1. DR PRINTS; PR01039; TRNASYNTHTRP. DR TIGRFAMs; TIGR00233; trpS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 326 Tryptophan--tRNA ligase. FT /FTId=PRO_0000136637. FT MOTIF 12 20 "HIGH" region. FT MOTIF 195 199 "KMSKS" region. FT BINDING 198 198 ATP. {ECO:0000250}. SQ SEQUENCE 326 AA; 36836 MW; FB352D7B685E2F80 CRC64; MHKKRVFSGI QPTGQIHLGN YLGAIKHWVE MQDEYENLFC VVNSHAITLP IDPAFLKSQS YELVKLLLAC GIDPKQSGLF IQSEVDEHPA LAWLLNCQVS MGEMQRMTQF KDKSLKNPKS VNVGLFNYPI LMASDILLYQ SDLVPVGEDQ KQHLELTRNI AEKFNRDFGN CFKVPEPLIA KVGARVMGLD DPKVKMSKSH QGANHAIFLL DEPDIIVKKI KKAATDSMGV IAFDEKREGI FNLLNIYMLL SNESPENIEE RFKNKGYGDF KKELAEVMIQ ALKPIQERYK EISDDEVKAI LNGGAEKARP LARATYQKAK ELMGLI // ID TGT_HELPY Reviewed; 371 AA. AC O08314; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 104. DE RecName: Full=Queuine tRNA-ribosyltransferase; DE EC=2.4.2.29; DE AltName: Full=Guanine insertion enzyme; DE AltName: Full=tRNA-guanine transglycosylase; GN Name=tgt; OrderedLocusNames=HP_0281; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=P1; RA Bereswill S., Fassbinder F., Voelzing C., Haas R., Kist M.; RL Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Exchanges the guanine residue with 7-aminomethyl-7- CC deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His CC and -Tyr). After this exchange, a cyclopentendiol moiety is CC attached to the 7-aminomethyl group of 7-deazaguanine, resulting CC in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- CC dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Guanine(34) in tRNA + queuine = queuosine(34) CC in tRNA + guanine. CC -!- CATALYTIC ACTIVITY: Guanine(34) in tRNA + 7-aminomethyl-7- CC carbaguanine = 7-aminomethyl-7-carbaguanine(34) in tRNA + guanine. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- PATHWAY: tRNA modification; tRNA-queuosine biosynthesis. CC -!- SIMILARITY: Belongs to the queuine tRNA-ribosyltransferase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07350.1; -; Genomic_DNA. DR EMBL; Y12061; CAA72784.1; -; Genomic_DNA. DR PIR; A64555; A64555. DR RefSeq; NP_207079.1; NC_000915.1. DR RefSeq; WP_000347385.1; NC_018939.1. DR ProteinModelPortal; O08314; -. DR DIP; DIP-3104N; -. DR IntAct; O08314; 10. DR MINT; MINT-187823; -. DR STRING; 85962.HP0281; -. DR PaxDb; O08314; -. DR PRIDE; O08314; -. DR EnsemblBacteria; AAD07350; AAD07350; HP_0281. DR GeneID; 900114; -. DR KEGG; heo:C694_01420; -. DR KEGG; hpy:HP0281; -. DR PATRIC; 20591789; VBIHelPyl33062_0292. DR eggNOG; ENOG4105C6U; Bacteria. DR eggNOG; COG0343; LUCA. DR KO; K00773; -. DR OMA; TPRFMPV; -. DR OrthoDB; EOG6SNDVG; -. DR BioCyc; HPY:HP0281-MONOMER; -. DR UniPathway; UPA00392; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008479; F:queuine tRNA-ribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006400; P:tRNA modification; IEA:InterPro. DR Gene3D; 3.20.20.105; -; 1. DR HAMAP; MF_00168; Q_tRNA_Tgt; 1. DR InterPro; IPR004803; Queuine_tRNA-ribosylTrfase. DR InterPro; IPR002616; tRNA_ribo_trans-like. DR Pfam; PF01702; TGT; 1. DR SUPFAM; SSF51713; SSF51713; 1. DR TIGRFAMs; TIGR00430; Q_tRNA_tgt; 1. DR TIGRFAMs; TIGR00449; tgt_general; 1. PE 3: Inferred from homology; KW Complete proteome; Glycosyltransferase; Metal-binding; KW Queuosine biosynthesis; Reference proteome; Transferase; KW tRNA processing; Zinc. FT CHAIN 1 371 Queuine tRNA-ribosyltransferase. FT /FTId=PRO_0000135483. FT ACT_SITE 90 90 Nucleophile. FT METAL 303 303 Zinc. {ECO:0000250}. FT METAL 305 305 Zinc. {ECO:0000250}. FT METAL 308 308 Zinc. {ECO:0000250}. FT METAL 334 334 Zinc. {ECO:0000250}. FT BINDING 91 91 Substrate. FT VARIANT 10 11 NN -> KH (in strain: P1). FT VARIANT 18 18 N -> D (in strain: P1). FT VARIANT 46 46 A -> V (in strain: P1). FT VARIANT 48 48 E -> G (in strain: P1). FT VARIANT 72 73 EE -> GQ (in strain: P1). FT VARIANT 76 76 G -> V (in strain: P1). FT VARIANT 79 79 R -> H (in strain: P1). FT VARIANT 84 84 Y -> Q (in strain: P1). FT VARIANT 108 108 D -> G (in strain: P1). FT VARIANT 119 120 SK -> NN (in strain: P1). FT VARIANT 169 169 M -> L (in strain: P1). FT VARIANT 177 177 K -> N (in strain: P1). FT VARIANT 181 181 S -> N (in strain: P1). FT VARIANT 206 206 E -> K (in strain: P1). FT VARIANT 233 233 A -> T (in strain: P1). FT VARIANT 258 258 S -> G (in strain: P1). FT VARIANT 304 304 A -> T (in strain: P1). SQ SEQUENCE 371 AA; 41416 MW; 2F579B19EA90FD6A CRC64; MDFQLQATDN NARAGLLNLA HSQVATPVFM PVGTQGCIKS LDATDAQEIL GAKLILANTY HMYLRPGEKV VEELGGLHRF AQFYGSFLTD SGGFQAFSLS DNVKLQEDGI VFKSHIDGSK HLFTPAKVLD IQYSLNSDIM MVLDDLVGLP APLKRLEESI KRSAKWANMS LEYHKEKNRP SNNLFAIIQG GTHLKMRSLS VGLTHEGFDG YAIGGLAVGE SADEMLETIA HTAPLLPKDK PRYLMGVGTP ENILDAISLG VDMFDCVMPT RNARNATLFT HSGKISIKNA PYKLDNTPIE ENCACYACKR YSKAYLHHLF RAKELTYARL ASLHNLHFYL ELVKNARNAI LEKRFLSFKK EFLEKYNSRS H // ID SYV_HELPY Reviewed; 874 AA. AC P56000; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02004}; DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02004}; DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02004}; DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02004}; GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02004}; GN OrderedLocusNames=HP_1153; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As CC ValRS can inadvertently accommodate and process structurally CC similar amino acids such as threonine, to avoid such errors, it CC has a "posttransfer" editing activity that hydrolyzes mischarged CC Thr-tRNA(Val) in a tRNA-dependent manner. {ECO:0000255|HAMAP- CC Rule:MF_02004}. CC -!- CATALYTIC ACTIVITY: ATP + L-valine + tRNA(Val) = AMP + diphosphate CC + L-valyl-tRNA(Val). {ECO:0000255|HAMAP-Rule:MF_02004}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02004}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02004}. CC -!- DOMAIN: ValRS has two distinct active sites: one for CC aminoacylation and one for editing. The misactivated threonine is CC translocated from the active site to the editing site. CC {ECO:0000255|HAMAP-Rule:MF_02004}. CC -!- DOMAIN: The C-terminal coiled-coil domain is crucial for CC aminoacylation activity. {ECO:0000255|HAMAP-Rule:MF_02004}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. ValS type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_02004}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08195.1; -; Genomic_DNA. DR PIR; A64664; A64664. DR RefSeq; NP_207944.1; NC_000915.1. DR RefSeq; WP_000605522.1; NC_000915.1. DR ProteinModelPortal; P56000; -. DR STRING; 85962.HP1153; -. DR PaxDb; P56000; -. DR PRIDE; P56000; -. DR EnsemblBacteria; AAD08195; AAD08195; HP_1153. DR GeneID; 899913; -. DR KEGG; hpy:HP1153; -. DR PATRIC; 20593657; VBIHelPyl33062_1207. DR eggNOG; ENOG4105CA4; Bacteria. DR eggNOG; COG0525; LUCA. DR KO; K01873; -. DR OMA; CETAISQ; -. DR OrthoDB; EOG644ZM1; -. DR BioCyc; HPY:HP1153-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 1. DR HAMAP; MF_02004; Val_tRNA_synth_type1; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR010978; tRNA-bd_arm. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR019499; Val-tRNA_synth_tRNA-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR InterPro; IPR002303; Valyl-tRNA_ligase. DR PANTHER; PTHR11946:SF5; PTHR11946:SF5; 2. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF00133; tRNA-synt_1; 1. DR Pfam; PF10458; Val_tRNA-synt_C; 1. DR PRINTS; PR00986; TRNASYNTHVAL. DR SUPFAM; SSF46589; SSF46589; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 1. DR TIGRFAMs; TIGR00422; valS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Coiled coil; KW Complete proteome; Cytoplasm; Ligase; Nucleotide-binding; KW Protein biosynthesis; Reference proteome. FT CHAIN 1 874 Valine--tRNA ligase. FT /FTId=PRO_0000106227. FT COILED 813 873 {ECO:0000255|HAMAP-Rule:MF_02004}. FT MOTIF 51 61 "HIGH" region. FT MOTIF 533 537 "KMSKS" region. FT BINDING 536 536 ATP. {ECO:0000255|HAMAP-Rule:MF_02004}. SQ SEQUENCE 874 AA; 101360 MW; BB5668E2ACD5AD28 CRC64; MIMKQEPTTY QPEEIEKKIY EICSHRGYFE IDGNEAIQEK NKRFCLMMPP PNVTGVLHIG HALTLSLQDI LARYKRMDGY KTLYQPGLDH AGIATQNVVE KQLLSQGIKK EDLGREEFIK KVWEWKEKSG GAILEQMKRL GVSAAFSRTR FTMDKGLQRA VKLAFLKWYE KGLIIQDNYM VNWCTKDGAL SDIEVEYEER KGALYYIRYY LENQKDYLVV ATTRPETLFG DSALMVNPND ERYKHLVGQK AILPLIHRTI PIIADEHVEM EFGTGCVKVT PGHDFNDYEV GKRHHLETIK IFDEKGILNA HCGEFENLER LEARDKVVER LKENALLEKI EEHTHQVGHC YRCHNVVEPY VSKQWFVKPE IAQSSIEKIQ QGLARFYPSN WINNYNAWMR ELRPWCISRQ LFWGHQIPVF TCENNHQFVS LDTPLSCPTC KSETLEQDKD VLDTWFSSGL WAFSTLGWGQ EKSGLFNESD LKDFYPNTTL ITGFDILFFW VARMLFCSES LLGELPFKDI YLHALVRDEK GEKMSKSKGN VIDPLEMIEK YGADSLRFTL ANLCATGRDI KLSTTHLENN KNFANKLFNA ASYLKLKQES FKDKERLNEY QTPLGRYAKS RLNSATKEAR NALDNYRFND ATTLLYRFLW GEFCDWFIEF SKVENEAIDE LGSVLKEALK LLHPFMPFIS ESLYHKLSNT ELENTESIMV MPYPKDLAQD EKLEHEFEVI KDCIVSLRRL KIMLETPPIV LKEASVGLRE AIENTERLQT YAQKLARLEK VSVISSKPLK SVSDVGEFCQ TYANLENLDL SPLVARLKKQ LEKLEKEKLK LNLHNENFVK NAPKSVLEKA KESLKTLLEK ESKIKQELDL LEQP // ID THID_HELPY Reviewed; 270 AA. AC O25515; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 88. DE RecName: Full=Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; DE EC=2.7.1.49; DE EC=2.7.4.7; DE AltName: Full=Hydroxymethylpyrimidine kinase; DE Short=HMP kinase; DE AltName: Full=Hydroxymethylpyrimidine phosphate kinase; DE Short=HMP-P kinase; DE Short=HMP-phosphate kinase; DE Short=HMPP kinase; GN Name=thiD; OrderedLocusNames=HP_0844; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of hydroxymethylpyrimidine CC phosphate (HMP-P) to HMP-PP, and of HMP to HMP-P. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: ATP + 4-amino-5-hydroxymethyl-2- CC methylpyrimidine = ADP + 4-amino-2-methyl-5- CC (phosphomethyl)pyrimidine. CC -!- CATALYTIC ACTIVITY: ATP + 4-amino-2-methyl-5- CC (phosphomethyl)pyrimidine = ADP + 4-amino-2-methyl-5- CC (diphosphomethyl)pyrimidine. CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; CC 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5- CC phospho-D-ribosyl)imidazole: step 2/3. CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; CC 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5- CC phospho-D-ribosyl)imidazole: step 3/3. CC -!- SIMILARITY: Belongs to the ThiD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07890.1; -; Genomic_DNA. DR PIR; D64625; D64625. DR RefSeq; NP_207637.1; NC_000915.1. DR RefSeq; WP_010875551.1; NC_000915.1. DR ProteinModelPortal; O25515; -. DR STRING; 85962.HP0844; -. DR PaxDb; O25515; -. DR PRIDE; O25515; -. DR EnsemblBacteria; AAD07890; AAD07890; HP_0844. DR GeneID; 899373; -. DR KEGG; hpy:HP0844; -. DR PATRIC; 20592981; VBIHelPyl33062_0878. DR eggNOG; ENOG4105DWF; Bacteria. DR eggNOG; COG0351; LUCA. DR KO; K00941; -. DR OMA; FAFHCVH; -. DR OrthoDB; EOG6XWV53; -. DR BioCyc; HPY:HP0844-MONOMER; -. DR UniPathway; UPA00060; UER00137. DR UniPathway; UPA00060; UER00138. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008902; F:hydroxymethylpyrimidine kinase activity; IEA:UniProtKB-EC. DR GO; GO:0008972; F:phosphomethylpyrimidine kinase activity; IEA:UniProtKB-EC. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1190.20; -; 1. DR InterPro; IPR004399; HMP/HMP-P_kinase. DR InterPro; IPR013749; PM/HMP-P_kinase-1. DR InterPro; IPR029056; Ribokinase-like. DR Pfam; PF08543; Phos_pyr_kin; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR TIGRFAMs; TIGR00097; HMP-P_kinase; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Nucleotide-binding; KW Reference proteome; Thiamine biosynthesis; Transferase. FT CHAIN 1 270 Hydroxymethylpyrimidine/ FT phosphomethylpyrimidine kinase. FT /FTId=PRO_0000192020. FT BINDING 46 46 Substrate. {ECO:0000250}. SQ SEQUENCE 270 AA; 28925 MW; C4F99BCABBD7204E CRC64; MVKIYPQVLS IAGSDSGGGS GIQADLKAFQ TLGVFGTSVI TCITAQNTQG VHGVYPLSVE SVKAQILAIR DDFSIKAFKM GALCNAQIIE CVADTLETCD FGLCVLDPVM VAKNGALLLE EEAILSLKKR LLPTTHLLTP NLPEVYALTG VQVRDDKSAS KAMGVLRDLG VKNAVIKGGH TEHFQGEYSN DWVFLEDAEF ILNAKRFNTK NTHGTGCTLS SLIVGLLAQG LDLKNAISKA KELLTIIIQN PLNIGHGHGP LNLWSIKELV // ID TATB_HELPY Reviewed; 160 AA. AC O25700; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Sec-independent protein translocase protein TatB {ECO:0000255|HAMAP-Rule:MF_00237}; GN Name=tatB {ECO:0000255|HAMAP-Rule:MF_00237}; GN OrderedLocusNames=HP_1060; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the twin-arginine translocation (Tat) system CC that transports large folded proteins containing a characteristic CC twin-arginine motif in their signal peptide across membranes. CC Together with TatC, TatB is part of a receptor directly CC interacting with Tat signal peptides. TatB may form an oligomeric CC binding site that transiently accommodates folded Tat precursor CC proteins before their translocation. {ECO:0000255|HAMAP- CC Rule:MF_00237}. CC -!- SUBUNIT: The Tat system comprises two distinct complexes: a TatABC CC complex, containing multiple copies of TatA, TatB and TatC CC subunits, and a separate TatA complex, containing only TatA CC subunits. Substrates initially bind to the TatABC complex, which CC probably triggers association of the separate TatA complex to form CC the active translocon. {ECO:0000255|HAMAP-Rule:MF_00237}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00237}; Single-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00237}. CC -!- SIMILARITY: Belongs to the TatB family. {ECO:0000255|HAMAP- CC Rule:MF_00237}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08110.1; -; Genomic_DNA. DR PIR; D64652; D64652. DR RefSeq; NP_207851.1; NC_000915.1. DR RefSeq; WP_000467616.1; NC_018939.1. DR ProteinModelPortal; O25700; -. DR IntAct; O25700; 1. DR STRING; 85962.HP1060; -. DR PaxDb; O25700; -. DR PRIDE; O25700; -. DR EnsemblBacteria; AAD08110; AAD08110; HP_1060. DR GeneID; 899595; -. DR KEGG; heo:C694_05480; -. DR KEGG; hpy:HP1060; -. DR PATRIC; 20593457; VBIHelPyl33062_1109. DR eggNOG; ENOG41084AD; Bacteria. DR eggNOG; COG1826; LUCA. DR KO; K03117; -. DR OMA; ATDNNTK; -. DR OrthoDB; EOG6WQD34; -. DR BioCyc; HPY:HP1060-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0033281; C:TAT protein transport complex; IEA:UniProtKB-HAMAP. DR GO; GO:0008320; F:protein transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR GO; GO:0043953; P:protein transport by the Tat complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00237; TatB; 1. DR InterPro; IPR018448; TatB. DR InterPro; IPR003998; TatB-like. DR PRINTS; PR01506; TATBPROTEIN. DR TIGRFAMs; TIGR01410; tatB; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 160 Sec-independent protein translocase FT protein TatB. FT /FTId=PRO_0000192658. FT TRANSMEM 1 21 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00237}. SQ SEQUENCE 160 AA; 18332 MW; 3BDA4234F7BABBD7 CRC64; MFGMGFFEIL VVLVVAIIFL GPEKFPQAVV DVVKFFRAVK KTLNDAKDTL DKEINIEEIK KETLEYQKLF ENKVESLKGV KIEELEDAKV TAENEIKSIQ DLMQDYQKSL ETNTIPNHLN EEVSNEEALN KEVSSDESPK EVQLATDNNT KEHDKEKENV // ID TATC_HELPY Reviewed; 253 AA. AC O25701; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Sec-independent protein translocase protein TatC {ECO:0000255|HAMAP-Rule:MF_00902}; GN Name=tatC {ECO:0000255|HAMAP-Rule:MF_00902}; GN OrderedLocusNames=HP_1061; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of the twin-arginine translocation (Tat) system CC that transports large folded proteins containing a characteristic CC twin-arginine motif in their signal peptide across membranes. CC Together with TatB, TatC is part of a receptor directly CC interacting with Tat signal peptides. {ECO:0000255|HAMAP- CC Rule:MF_00902}. CC -!- SUBUNIT: The Tat system comprises two distinct complexes: a TatABC CC complex, containing multiple copies of TatA, TatB and TatC CC subunits, and a separate TatA complex, containing only TatA CC subunits. Substrates initially bind to the TatABC complex, which CC probably triggers association of the separate TatA complex to form CC the active translocon. {ECO:0000255|HAMAP-Rule:MF_00902}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00902}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00902}. CC -!- SIMILARITY: Belongs to the TatC family. {ECO:0000255|HAMAP- CC Rule:MF_00902}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08101.1; -; Genomic_DNA. DR PIR; E64652; E64652. DR RefSeq; NP_207852.1; NC_000915.1. DR RefSeq; WP_000461250.1; NC_018939.1. DR ProteinModelPortal; O25701; -. DR STRING; 85962.HP1061; -. DR PaxDb; O25701; -. DR PRIDE; O25701; -. DR EnsemblBacteria; AAD08101; AAD08101; HP_1061. DR GeneID; 899596; -. DR KEGG; heo:C694_05485; -. DR KEGG; hpy:HP1061; -. DR PATRIC; 20593459; VBIHelPyl33062_1110. DR eggNOG; ENOG4105DCX; Bacteria. DR eggNOG; COG0805; LUCA. DR KO; K03118; -. DR OMA; ATQIYKF; -. DR OrthoDB; EOG60SCQS; -. DR BioCyc; HPY:HP1061-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0033281; C:TAT protein transport complex; IEA:UniProtKB-HAMAP. DR GO; GO:0008320; F:protein transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0043953; P:protein transport by the Tat complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00902; TatC; 1. DR InterPro; IPR019820; Sec-indep_translocase_CS. DR InterPro; IPR002033; TatC. DR PANTHER; PTHR30371:SF0; PTHR30371:SF0; 1. DR Pfam; PF00902; TatC; 1. DR PRINTS; PR01840; TATCFAMILY. DR TIGRFAMs; TIGR00945; tatC; 1. DR PROSITE; PS01218; TATC; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Translocation; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 253 Sec-independent protein translocase FT protein TatC. FT /FTId=PRO_0000098087. FT TRANSMEM 18 38 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 69 89 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 96 116 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 151 171 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 187 207 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 208 228 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00902}. SQ SEQUENCE 253 AA; 28226 MW; 65F0D8D3251DA8CC CRC64; MFEDLKPHLQ ELRKRLMVSV GTILVAFLGC FHFWKSIFEF VKNSYKGTLI QLSPIEGVMV AVKISFSAAI VISMPIIFWQ LWLFIAPGLY KNEKKVILPF VFFGSGMFLI GAAFSYYVVF PFIIEYLATF GSDVFAANIS ASSYVSFFTR LILGFGVAFE LPVLAYFLAK VGLITDASLK AYFKYAIVVI FIVAAIITPP DVVSQIFMAL PLVGLYGLSI LIAKMVNPAP KDNENNNENN NENNTKENTK SES // ID THYX_HELPY Reviewed; 208 AA. AC O26061; DT 11-JUL-2001, integrated into UniProtKB/Swiss-Prot. DT 11-JUL-2001, sequence version 2. DT 13-APR-2016, entry version 92. DE RecName: Full=Thymidylate synthase ThyX; DE Short=TS; DE Short=TSase; DE EC=2.1.1.148; GN Name=thyX; OrderedLocusNames=HP_1533; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP CHARACTERIZATION, AND MUTAGENESIS OF SER-84. RX PubMed=12029065; DOI=10.1126/science.1072113; RA Myllykallio H., Lipowski G., Leduc D., Filee J., Forterre P., RA Liebl U.; RT "An alternative flavin-dependent mechanism for thymidylate RT synthesis."; RL Science 297:105-107(2002). CC -!- FUNCTION: Catalyzes the formation of dTMP and tetrahydrofolate CC from dUMP and methylenetetrahydrofolate. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + dUMP + NADPH CC = dTMP + tetrahydrofolate + NADP(+). CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Note=Binds 1 FAD per subunit.; CC -!- SUBUNIT: Homotetramer. CC -!- MISCELLANEOUS: ThyX activity is mechanistically distinct from ThyA CC activity. CC -!- SIMILARITY: Belongs to the thymidylate synthase ThyX family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 thyX (flavin-dependent thymidylate CC synthase) domain. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08571.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08571.1; ALT_INIT; Genomic_DNA. DR PIR; E64711; E64711. DR RefSeq; NP_208323.1; NC_000915.1. DR RefSeq; WP_000451918.1; NC_018939.1. DR RefSeq; WP_010875637.1; NC_000915.1. DR PDB; 3AH5; X-ray; 2.50 A; A/B/C/D/E/F=1-208. DR PDBsum; 3AH5; -. DR ProteinModelPortal; O26061; -. DR IntAct; O26061; 12. DR MINT; MINT-160429; -. DR STRING; 85962.HP1533; -. DR PaxDb; O26061; -. DR EnsemblBacteria; AAD08571; AAD08571; HP_1533. DR GeneID; 899757; -. DR KEGG; heo:C694_07940; -. DR KEGG; hpy:HP1533; -. DR PATRIC; 20594487; VBIHelPyl33062_1611. DR eggNOG; ENOG41087GE; Bacteria. DR eggNOG; COG1351; LUCA. DR KO; K03465; -. DR OMA; AHAIRTC; -. DR OrthoDB; EOG6SFP8J; -. DR BioCyc; MetaCyc:MONOMER-15768; -. DR EvolutionaryTrace; O26061; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:UniProtKB-HAMAP. DR GO; GO:0050797; F:thymidylate synthase (FAD) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006231; P:dTMP biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01408; ThyX; 1. DR InterPro; IPR003669; Thymidylate_synthase_ThyX. DR Pfam; PF02511; Thy1; 1. DR SUPFAM; SSF69796; SSF69796; 1. DR TIGRFAMs; TIGR02170; thyX; 1. DR PROSITE; PS51331; THYX; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; FAD; Flavoprotein; Methyltransferase; KW NADP; Nucleotide biosynthesis; Reference proteome; Transferase. FT CHAIN 1 208 Thymidylate synthase ThyX. FT /FTId=PRO_0000175566. FT DOMAIN 1 208 ThyX. FT MOTIF 74 84 ThyX motif. FT MUTAGEN 84 84 S->A: Abolishes complementation when FT expressed in E.coli. FT {ECO:0000269|PubMed:12029065}. FT STRAND 2 8 {ECO:0000244|PDB:3AH5}. FT HELIX 12 22 {ECO:0000244|PDB:3AH5}. FT HELIX 25 27 {ECO:0000244|PDB:3AH5}. FT STRAND 30 32 {ECO:0000244|PDB:3AH5}. FT HELIX 33 43 {ECO:0000244|PDB:3AH5}. FT HELIX 46 54 {ECO:0000244|PDB:3AH5}. FT STRAND 56 65 {ECO:0000244|PDB:3AH5}. FT HELIX 66 72 {ECO:0000244|PDB:3AH5}. FT STRAND 77 82 {ECO:0000244|PDB:3AH5}. FT HELIX 85 88 {ECO:0000244|PDB:3AH5}. FT HELIX 89 92 {ECO:0000244|PDB:3AH5}. FT HELIX 103 109 {ECO:0000244|PDB:3AH5}. FT TURN 110 112 {ECO:0000244|PDB:3AH5}. FT HELIX 119 137 {ECO:0000244|PDB:3AH5}. FT HELIX 143 146 {ECO:0000244|PDB:3AH5}. FT HELIX 147 149 {ECO:0000244|PDB:3AH5}. FT STRAND 154 163 {ECO:0000244|PDB:3AH5}. FT HELIX 164 174 {ECO:0000244|PDB:3AH5}. FT HELIX 181 193 {ECO:0000244|PDB:3AH5}. FT TURN 196 198 {ECO:0000244|PDB:3AH5}. FT HELIX 199 201 {ECO:0000244|PDB:3AH5}. FT HELIX 203 205 {ECO:0000244|PDB:3AH5}. FT TURN 206 208 {ECO:0000244|PDB:3AH5}. SQ SEQUENCE 208 AA; 24071 MW; 88FF23ED4B26283C CRC64; MEVICKHYTP LDIASQAIRT CWQSFEYSDD GGCKDKELIH RVGNIFRHSS TLEHLYYNFE IKGLSRGALQ ELSRHRIASL SVKSSRYTLR ELKEVESFLP LNETNLERAK EFLVFVDNEK VNAMSVLALE NLRILLSEHN IKNDLAKYAM PESYKTHLAY SINARSLQNF LTLRSSNKAL KEMQDLAKAL FDALPGEHQY LFEDCLKH // ID THRC_HELPY Reviewed; 486 AA. AC O24924; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Threonine synthase; DE Short=TS; DE EC=4.2.3.1; GN Name=thrC; OrderedLocusNames=HP_0098; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the gamma-elimination of phosphate from L- CC phosphohomoserine and the beta-addition of water to produce L- CC threonine. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: O-phospho-L-homoserine + H(2)O = L-threonine + CC phosphate. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 5/5. CC -!- SIMILARITY: Belongs to the threonine synthase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07166.1; -; Genomic_DNA. DR PIR; B64532; B64532. DR RefSeq; NP_206898.1; NC_000915.1. DR RefSeq; WP_001117321.1; NC_018939.1. DR ProteinModelPortal; O24924; -. DR STRING; 85962.HP0098; -. DR PaxDb; O24924; -. DR PRIDE; O24924; -. DR EnsemblBacteria; AAD07166; AAD07166; HP_0098. DR GeneID; 898925; -. DR KEGG; heo:C694_00480; -. DR KEGG; hpy:HP0098; -. DR PATRIC; 20591407; VBIHelPyl33062_0103. DR eggNOG; ENOG4107QID; Bacteria. DR eggNOG; COG0498; LUCA. DR KO; K01733; -. DR OMA; PIFALNE; -. DR OrthoDB; EOG65BDJX; -. DR BioCyc; HPY:HP0098-MONOMER; -. DR UniPathway; UPA00050; UER00065. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0004795; F:threonine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.90.1380.10; -; 1. DR InterPro; IPR000634; Ser/Thr_deHydtase_PyrdxlP-BS. DR InterPro; IPR029144; Thr_synth_N. DR InterPro; IPR004450; Thr_synthase-like. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR TIGRFAMs; TIGR00260; thrC; 1. DR PROSITE; PS00165; DEHYDRATASE_SER_THR; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Lyase; KW Pyridoxal phosphate; Reference proteome; Threonine biosynthesis. FT CHAIN 1 486 Threonine synthase. FT /FTId=PRO_0000185633. FT MOD_RES 109 109 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 486 AA; 54707 MW; CD9637799B508988 CRC64; MPFVPTRSLK EKKIDFIEAI LNPNAPKGGL YTLERFETLQ WQDCLNLSYN DLVECVFERL GLEIPKNLLA SALKRYENFD NPKNPAPIFA LNERLFVQEL YHGPSLAFKD MALQPLASLF SNLAVGKNEK YLMLVSTSGD TGPATLESLA GMPNVFVVCL YPKDGTSLVQ KLQMVTQSAS NLKVFGISGD FDDAQNALKN LLKDDDFNEA LKACQLKLSV ANSVNFGRIA FQIVYHIWGF LELYKKGAIN SKEKITLAIP SGNFGNALGA FYAKKMGLNI DKIKVVTNSN DVLREFIETG RYDLTHRSLK QTYSPAMDIL KSSNVERALF SLFGFERTLE LMQALEEEKF YALKPKELAL LQEHFSCASC SDEACLKTIQ EVYAEHQYLI DPHTATALNA SLKTHEKTLV SATASYEKFP RITLLALNEQ KKNDNDKAAL ETLKNSYNTP DSQRLDDLFE RGIKHQEVLK LNEIKSSILL WLESLH // ID THIE_HELPY Reviewed; 219 AA. AC O25514; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 104. DE RecName: Full=Thiamine-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00097}; DE Short=TP synthase {ECO:0000255|HAMAP-Rule:MF_00097}; DE Short=TPS {ECO:0000255|HAMAP-Rule:MF_00097}; DE EC=2.5.1.3 {ECO:0000255|HAMAP-Rule:MF_00097}; DE AltName: Full=Thiamine-phosphate pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00097}; DE Short=TMP pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00097}; DE Short=TMP-PPase {ECO:0000255|HAMAP-Rule:MF_00097}; GN Name=thiE {ECO:0000255|HAMAP-Rule:MF_00097}; GN OrderedLocusNames=HP_0843; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole CC monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl CC pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate CC (TMP). {ECO:0000255|HAMAP-Rule:MF_00097}. CC -!- CATALYTIC ACTIVITY: 4-amino-2-methyl-5-diphosphomethylpyrimidine + CC 2-((2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene)ethyl phosphate CC = diphosphate + thiamine phosphate + CO(2). {ECO:0000255|HAMAP- CC Rule:MF_00097}. CC -!- CATALYTIC ACTIVITY: 4-amino-2-methyl-5-diphosphomethylpyrimidine + CC 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate = diphosphate + CC thiamine phosphate + CO(2). {ECO:0000255|HAMAP-Rule:MF_00097}. CC -!- CATALYTIC ACTIVITY: 4-amino-2-methyl-5-diphosphomethylpyrimidine + CC 4-methyl-5-(2-phosphono-oxyethyl)thiazole = diphosphate + thiamine CC phosphate. {ECO:0000255|HAMAP-Rule:MF_00097}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00097}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00097}; CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; CC thiamine phosphate from 4-amino-2-methyl-5- CC diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)- CC thiazole: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00097}. CC -!- SIMILARITY: Belongs to the thiamine-phosphate synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00097}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07889.1; -; Genomic_DNA. DR PIR; C64625; C64625. DR RefSeq; NP_207636.1; NC_000915.1. DR RefSeq; WP_000458912.1; NC_018939.1. DR ProteinModelPortal; O25514; -. DR STRING; 85962.HP0843; -. DR PaxDb; O25514; -. DR PRIDE; O25514; -. DR EnsemblBacteria; AAD07889; AAD07889; HP_0843. DR GeneID; 899372; -. DR KEGG; heo:C694_04320; -. DR KEGG; hpy:HP0843; -. DR PATRIC; 20592979; VBIHelPyl33062_0877. DR eggNOG; ENOG4108UV6; Bacteria. DR eggNOG; COG0352; LUCA. DR KO; K00788; -. DR OMA; ITTHNAS; -. DR OrthoDB; EOG6W19NW; -. DR BioCyc; HPY:HP0843-MONOMER; -. DR UniPathway; UPA00060; UER00141. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004789; F:thiamine-phosphate diphosphorylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00097; TMP_synthase; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR022998; ThiaminP_synth_SF. DR InterPro; IPR003733; TMP_synthase. DR Pfam; PF02581; TMP-TENI; 1. DR SUPFAM; SSF51391; SSF51391; 1. DR TIGRFAMs; TIGR00693; thiE; 1. PE 3: Inferred from homology; KW Complete proteome; Magnesium; Metal-binding; Reference proteome; KW Thiamine biosynthesis; Transferase. FT CHAIN 1 219 Thiamine-phosphate synthase. FT /FTId=PRO_0000157017. FT REGION 48 52 HMP-PP binding. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT REGION 150 152 THZ-P binding. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT REGION 199 200 THZ-P binding. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT METAL 85 85 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT METAL 104 104 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT BINDING 84 84 HMP-PP. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT BINDING 123 123 HMP-PP. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT BINDING 153 153 HMP-PP. {ECO:0000255|HAMAP- FT Rule:MF_00097}. FT BINDING 181 181 THZ-P; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00097}. SQ SEQUENCE 219 AA; 23897 MW; 033E0191999238BD CRC64; MFDADCLKLM FVAGSQDFYH IKGGKNDRIN ALLDTLELAL QSKITAFQFR QKGDLALQDP TQIKQLAMKC QKLCQKYGAP FIVNDEVQLA LELKADGVHV GQEDMAIEEV ITLCKKRQFI GLSVNTLEQA LKARHLDAVA YLGVGPIFPT PSKKDKQVVG VELLKKIKDS GIKKPLIAIG GITMHNAPKL REYGGIAVIS AIAQAKDKAL AVGKLLNNA // ID THIM_HELPY Reviewed; 259 AA. AC O25516; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2000, sequence version 2. DT 11-MAY-2016, entry version 110. DE RecName: Full=Hydroxyethylthiazole kinase {ECO:0000255|HAMAP-Rule:MF_00228}; DE EC=2.7.1.50 {ECO:0000255|HAMAP-Rule:MF_00228}; DE AltName: Full=4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000255|HAMAP-Rule:MF_00228}; DE Short=TH kinase {ECO:0000255|HAMAP-Rule:MF_00228}; DE Short=Thz kinase {ECO:0000255|HAMAP-Rule:MF_00228}; GN Name=thiM {ECO:0000255|HAMAP-Rule:MF_00228}; GN OrderedLocusNames=HP_0845; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the phosphorylation of the hydroxyl group of CC 4-methyl-5-beta-hydroxyethylthiazole (THZ). {ECO:0000255|HAMAP- CC Rule:MF_00228}. CC -!- CATALYTIC ACTIVITY: ATP + 4-methyl-5-(2-hydroxyethyl)thiazole = CC ADP + 4-methyl-5-(2-phosphonooxyethyl)thiazole. CC {ECO:0000255|HAMAP-Rule:MF_00228}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00228}; CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; CC 4-methyl-5-(2-phosphoethyl)-thiazole from 5-(2-hydroxyethyl)-4- CC methylthiazole: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00228}. CC -!- SIMILARITY: Belongs to the Thz kinase family. {ECO:0000255|HAMAP- CC Rule:MF_00228}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07891.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07891.1; ALT_INIT; Genomic_DNA. DR PIR; E64625; E64625. DR RefSeq; NP_207638.1; NC_000915.1. DR RefSeq; WP_000344879.1; NC_000915.1. DR RefSeq; WP_015056066.1; NC_018939.1. DR ProteinModelPortal; O25516; -. DR IntAct; O25516; 1. DR STRING; 85962.HP0845; -. DR PaxDb; O25516; -. DR EnsemblBacteria; AAD07891; AAD07891; HP_0845. DR GeneID; 899374; -. DR KEGG; heo:C694_04330; -. DR KEGG; hpy:HP0845; -. DR PATRIC; 20592983; VBIHelPyl33062_0879. DR eggNOG; ENOG4105C4U; Bacteria. DR eggNOG; COG2145; LUCA. DR KO; K00878; -. DR OMA; SPVMAHA; -. DR OrthoDB; EOG628F8M; -. DR UniPathway; UPA00060; UER00139. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004417; F:hydroxyethylthiazole kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1190.20; -; 1. DR HAMAP; MF_00228; Thz_kinase; 1. DR InterPro; IPR000417; Hyethyz_kinase. DR InterPro; IPR029056; Ribokinase-like. DR Pfam; PF02110; HK; 1. DR PIRSF; PIRSF000513; Thz_kinase; 1. DR PRINTS; PR01099; HYETHTZKNASE. DR SUPFAM; SSF53613; SSF53613; 1. DR TIGRFAMs; TIGR00694; thiM; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; KW Nucleotide-binding; Reference proteome; Thiamine biosynthesis; KW Transferase. FT CHAIN 1 259 Hydroxyethylthiazole kinase. FT /FTId=PRO_0000156937. FT BINDING 37 37 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00228}. FT BINDING 113 113 ATP. {ECO:0000255|HAMAP-Rule:MF_00228}. FT BINDING 158 158 ATP. {ECO:0000255|HAMAP-Rule:MF_00228}. FT BINDING 185 185 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00228}. SQ SEQUENCE 259 AA; 27515 MW; ACC0DCE9B993F730 CRC64; MLKELRQKRP LVHNITNYVA AQFVANGLLA LGASPLMSDA IDEMRDLAKI SDALAINIGT LNDRAILCAK EAIKHYKALN KPIVLDPVGC SASALRHDTS LELLKSGGIS ALRGNAAELG SLVGISCESK GLDSNDAATP VEIIKLAAQK YSVIAVMTGK TDYVSDGKKV LSITGGSEYL ALITGAGCLH AAACASFLSL KKDPLDSMAQ LCALYKQAAF NAQKKVLENN GSNGSFLFYF LDALSLPIEL ENSLIKEEW // ID TOP1_HELPY Reviewed; 736 AA. AC P55991; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 113. DE RecName: Full=DNA topoisomerase 1 {ECO:0000255|HAMAP-Rule:MF_00952}; DE EC=5.99.1.2 {ECO:0000255|HAMAP-Rule:MF_00952}; DE AltName: Full=DNA topoisomerase I {ECO:0000255|HAMAP-Rule:MF_00952}; DE AltName: Full=Omega-protein; DE AltName: Full=Relaxing enzyme; DE AltName: Full=Swivelase; DE AltName: Full=Untwisting enzyme; GN Name=topA {ECO:0000255|HAMAP-Rule:MF_00952}; GN OrderedLocusNames=HP_0116; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Releases the supercoiling and torsional tension of DNA, CC which is introduced during the DNA replication and transcription, CC by transiently cleaving and rejoining one strand of the DNA CC duplex. Introduces a single-strand break via transesterification CC at a target site in duplex DNA. The scissile phosphodiester is CC attacked by the catalytic tyrosine of the enzyme, resulting in the CC formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the CC expulsion of a 3'-OH DNA strand. The free DNA strand then CC undergoes passage around the unbroken strand, thus removing DNA CC supercoils. Finally, in the religation step, the DNA 3'-OH attacks CC the covalent intermediate to expel the active-site tyrosine and CC restore the DNA phosphodiester backbone. {ECO:0000255|HAMAP- CC Rule:MF_00952}. CC -!- CATALYTIC ACTIVITY: ATP-independent breakage of single-stranded CC DNA, followed by passage and rejoining. {ECO:0000255|HAMAP- CC Rule:MF_00952}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00952}; CC Note=Binds two Mg(2+) per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00952}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00952}. CC -!- INTERACTION: CC O26081:HP_1559; NbExp=3; IntAct=EBI-7493738, EBI-7500288; CC -!- SIMILARITY: Belongs to the type IA topoisomerase family. CC {ECO:0000255|HAMAP-Rule:MF_00952}. CC -!- SIMILARITY: Contains 1 Toprim domain. {ECO:0000255|HAMAP- CC Rule:MF_00952}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07184.1; -; Genomic_DNA. DR PIR; D64534; D64534. DR RefSeq; NP_206916.1; NC_000915.1. DR RefSeq; WP_000681408.1; NC_018939.1. DR ProteinModelPortal; P55991; -. DR DIP; DIP-3057N; -. DR IntAct; P55991; 16. DR MINT; MINT-182749; -. DR STRING; 85962.HP0116; -. DR PaxDb; P55991; -. DR PRIDE; P55991; -. DR EnsemblBacteria; AAD07184; AAD07184; HP_0116. DR GeneID; 898836; -. DR KEGG; heo:C694_00575; -. DR KEGG; hpy:HP0116; -. DR PATRIC; 20591447; VBIHelPyl33062_0123. DR eggNOG; ENOG4105C73; Bacteria. DR eggNOG; COG0550; LUCA. DR eggNOG; COG0551; LUCA. DR KO; K03168; -. DR OMA; WHISEEL; -. DR OrthoDB; EOG6S7XQ9; -. DR BioCyc; HPY:HP0116-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003917; F:DNA topoisomerase type I activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.460.10; -; 2. DR Gene3D; 2.70.20.10; -; 2. DR Gene3D; 3.40.50.140; -; 1. DR HAMAP; MF_00952; Topoisom_1_prok; 1. DR InterPro; IPR000380; Topo_IA. DR InterPro; IPR003601; Topo_IA_2. DR InterPro; IPR023406; Topo_IA_AS. DR InterPro; IPR013497; Topo_IA_cen. DR InterPro; IPR013824; Topo_IA_cen_sub1. DR InterPro; IPR013825; Topo_IA_cen_sub2. DR InterPro; IPR023405; Topo_IA_core_domain. DR InterPro; IPR003602; Topo_IA_DNA-bd_dom. DR InterPro; IPR013498; Topo_IA_Znf. DR InterPro; IPR005733; TopoI_bac-type. DR InterPro; IPR028612; Topoisom_1_IA. DR InterPro; IPR006171; Toprim_domain. DR PANTHER; PTHR11390; PTHR11390; 1. DR Pfam; PF01131; Topoisom_bac; 1. DR Pfam; PF01751; Toprim; 1. DR Pfam; PF01396; zf-C4_Topoisom; 3. DR PRINTS; PR00417; PRTPISMRASEI. DR SMART; SM00437; TOP1Ac; 1. DR SMART; SM00436; TOP1Bc; 1. DR SMART; SM00493; TOPRIM; 1. DR SUPFAM; SSF56712; SSF56712; 1. DR TIGRFAMs; TIGR01051; topA_bact; 1. DR PROSITE; PS00396; TOPOISOMERASE_I_PROK; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA-binding; Isomerase; Magnesium; Metal-binding; KW Reference proteome; Repeat; Topoisomerase; Zinc; Zinc-finger. FT CHAIN 1 736 DNA topoisomerase 1. FT /FTId=PRO_0000145150. FT DOMAIN 2 113 Toprim. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT ZN_FING 572 598 C4-type 1. FT ZN_FING 616 642 C4-type 2. FT ZN_FING 663 689 C4-type 3. FT ZN_FING 702 725 C4-type 4. FT REGION 163 168 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT ACT_SITE 297 297 O-(5'-phospho-DNA)-tyrosine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00952}. FT METAL 8 8 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_00952}. FT METAL 82 82 Magnesium 1; catalytic. FT {ECO:0000255|HAMAP-Rule:MF_00952}. FT METAL 82 82 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT METAL 84 84 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 32 32 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 139 139 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 140 140 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 143 143 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 299 299 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. FT SITE 484 484 Interaction with DNA. {ECO:0000255|HAMAP- FT Rule:MF_00952}. SQ SEQUENCE 736 AA; 83196 MW; 357CE39735F48475 CRC64; MKHLIIVESP AKAKTIKNFL DKNYEVIASK GHVRDLSKFA LGIKIDETGF TPNYVVDKDH KELVKQIIEL SKKASITYIA TDEDREGEAI GYHVACLIGG KLESYPRIVF HEITQNAILN ALKTPRKIDM SKVNAQQARR FLDRIVGFKL SSLIASKITK GLSAGRVQSA ALKLVIDKER EIKAFKPLTY FTLDAYFESH LEAQLISYKG NKLKAQELID EKKAQEIKNE LEKESYAISS IVKKSKKSPT PPPFMTSTLQ QSASSLLGFS PTKTMSIAQK LYEGVATPQG VMGVITYMRT DSLNIAKEAL EEARNKILKD YGKDYLPPKA KVYSSKNKNA QEAHEAIRPT SIILEPNALK DYLKPEELRL YTLIYKRFLA SQMQDALFES QSVVVACEKG EFKASGRKLL FDGYYKILGN DDKDKLLPNL KENDPIKLEK LESNAHVTEP PARYSEASLI KVLESLGIGR PSTYAPTISL LQNRDYIKVE KKQISALESA FKVIEILEKH FEEIVDSKFS ASLEEELDNI AQNKADYQQV LKDFYYPFMD KIEAGKKNII SQKVHEKTGQ SCPKCGGELV KKNSRYGEFI ACNNYPKCKY VKQTESANDE ADQELCEKCG GEMVQKFSRN GAFLACNNYP ECKNTKSLKN TPNAKETIEG VKCPECGGDI ALKRSKKGSF YGCNNYPKCN FLSNHKPINK RCEKCHYLMS ERIYRKKKAH ECIKCKERVF LEEDNG // ID THIO_HELPY Reviewed; 106 AA. AC P66928; P56430; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-MAY-2016, entry version 75. DE RecName: Full=Thioredoxin; DE Short=Trx; GN Name=trxA; OrderedLocusNames=HP_0824; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Participates in various redox reactions through the CC reversible oxidation of its active center dithiol to a disulfide CC and catalyzes dithiol-disulfide exchange reactions. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the thioredoxin family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 thioredoxin domain. {ECO:0000255|PROSITE- CC ProRule:PRU00691}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07874.1; -; Genomic_DNA. DR PIR; H64622; H64622. DR RefSeq; NP_207617.1; NC_000915.1. DR RefSeq; WP_000020199.1; NC_018939.1. DR ProteinModelPortal; P66928; -. DR IntAct; P66928; 3. DR STRING; 85962.HP0824; -. DR PaxDb; P66928; -. DR PRIDE; P66928; -. DR EnsemblBacteria; AAD07874; AAD07874; HP_0824. DR GeneID; 899362; -. DR KEGG; heo:C694_04220; -. DR KEGG; hpy:HP0824; -. DR PATRIC; 20592937; VBIHelPyl33062_0857. DR eggNOG; ENOG4105K63; Bacteria. DR eggNOG; COG0526; LUCA. DR KO; K03671; -. DR OMA; KKTYTDA; -. DR OrthoDB; EOG6QG8RK; -. DR BioCyc; HPY:HP0824-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR GO; GO:0045454; P:cell redox homeostasis; IEA:InterPro. DR GO; GO:0006662; P:glycerol ether metabolic process; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR005746; Thioredoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR InterPro; IPR017937; Thioredoxin_CS. DR InterPro; IPR013766; Thioredoxin_domain. DR PANTHER; PTHR10438; PTHR10438; 1. DR Pfam; PF00085; Thioredoxin; 1. DR PIRSF; PIRSF000077; Thioredoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR TIGRFAMs; TIGR01068; thioredoxin; 1. DR PROSITE; PS00194; THIOREDOXIN_1; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 3: Inferred from homology; KW Complete proteome; Disulfide bond; Electron transport; KW Redox-active center; Reference proteome; Transport. FT CHAIN 1 106 Thioredoxin. FT /FTId=PRO_0000120108. FT DOMAIN 2 106 Thioredoxin. {ECO:0000255|PROSITE- FT ProRule:PRU00691}. FT DISULFID 30 33 Redox-active. {ECO:0000255|PROSITE- FT ProRule:PRU00691}. SQ SEQUENCE 106 AA; 11855 MW; 0616F0DC47695967 CRC64; MSHYIELTEE NFESTIKKGV ALVDFWAPWC GPCKMLSPVI DELASEYEGK AKICKVNTDE QEELSAKFGI RSIPTLLFTK DGEVVHQLVG VQTKVALKEQ LNKLLG // ID TIG_HELPY Reviewed; 451 AA. AC P56420; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 95. DE RecName: Full=Trigger factor; DE Short=TF; DE EC=5.2.1.8; DE AltName: Full=PPIase; GN Name=tig; OrderedLocusNames=HP_0795; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in protein export. Acts as a chaperone by CC maintaining the newly synthesized protein in an open conformation. CC Functions as a peptidyl-prolyl cis-trans isomerase (By CC similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Peptidylproline (omega=180) = peptidylproline CC (omega=0). CC -!- SUBCELLULAR LOCATION: Cytoplasm. Note=About half TF is bound to CC the ribosome near the polypeptide exit tunnel while the other half CC is free in the cytoplasm. {ECO:0000250}. CC -!- DOMAIN: Consists of 3 domains; the N-terminus binds the ribosome, CC the middle domain has PPIase activity, while the C-terminus has CC intrinsic chaperone activity on its own. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the FKBP-type PPIase family. Tig subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 PPIase FKBP-type domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07843.1; -; Genomic_DNA. DR PIR; C64619; C64619. DR RefSeq; NP_207588.1; NC_000915.1. DR RefSeq; WP_001047731.1; NC_018939.1. DR ProteinModelPortal; P56420; -. DR DIP; DIP-3211N; -. DR IntAct; P56420; 4. DR MINT; MINT-165232; -. DR STRING; 85962.HP0795; -. DR PaxDb; P56420; -. DR PRIDE; P56420; -. DR EnsemblBacteria; AAD07843; AAD07843; HP_0795. DR GeneID; 899053; -. DR KEGG; heo:C694_04075; -. DR KEGG; hpy:HP0795; -. DR PATRIC; 20592877; VBIHelPyl33062_0827. DR eggNOG; ENOG4105DEA; Bacteria. DR eggNOG; COG0544; LUCA. DR KO; K03545; -. DR OMA; FRNDATK; -. DR OrthoDB; EOG63VBX3; -. DR BioCyc; HPY:HP0795-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3120.10; -; 1. DR Gene3D; 3.30.70.1050; -; 1. DR HAMAP; MF_00303; Trigger_factor_Tig; 1. DR InterPro; IPR001179; PPIase_FKBP_dom. DR InterPro; IPR005215; Trig_fac. DR InterPro; IPR008880; Trigger_fac_C. DR InterPro; IPR008881; Trigger_fac_ribosome-bd_bac. DR InterPro; IPR027304; Trigger_fact/SurA_dom. DR Pfam; PF00254; FKBP_C; 1. DR Pfam; PF05698; Trigger_C; 1. DR Pfam; PF05697; Trigger_N; 1. DR PIRSF; PIRSF003095; Trigger_factor; 1. DR SUPFAM; SSF102735; SSF102735; 1. DR SUPFAM; SSF109998; SSF109998; 1. DR TIGRFAMs; TIGR00115; tig; 1. DR PROSITE; PS50059; FKBP_PPIASE; 1. PE 3: Inferred from homology; KW Cell cycle; Cell division; Chaperone; Complete proteome; Cytoplasm; KW Isomerase; Reference proteome; Rotamase. FT CHAIN 1 451 Trigger factor. FT /FTId=PRO_0000179363. FT DOMAIN 165 250 PPIase FKBP-type. SQ SEQUENCE 451 AA; 51989 MW; 711A8219BFEB0D2A CRC64; MNLEVKKIDT ANARLSAKLS IENLEKRYDK IAQKIAQKVK IDGFRRGKVP LSLVKTRYQA QIEQDAQEEM IQEVLKNAFK ELGIENKDLI GSPNLTKFEK KDTHFEIEAD IGLKPTIVLD KIKECVPSVG VEVPNEEKID ERLKQLAKDY AKFVDTNTQR KAQNDDKLTI DFEGFIDNAP FEGGKAENFN LILGSKQMLE DFEKALLGMQ AGEEKEFPLT FPSKYHAEHL AGKEAFFKVK LHQIQAREML EINDELAKIV LANEENATLK LLKERVEGQL FLENKARLYN EELKEKLIEN LDEKIVFDLP KTIIEQEMDL LFRNALYSMQ AEEVKSLQES QEKAKEKRES FRNDATKSVK ITFIIDALAK EEKIGVHDNE VFQTLYYEAM MTGQNPENLI EQYRKNNMLA AVKMAMIEDR VLAYLLDKNL PKEQQEILEK MRPNAQKIQA G // ID TILS_HELPY Reviewed; 336 AA. AC O25428; DT 15-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=tRNA(Ile)-lysidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; DE EC=6.3.4.19 {ECO:0000255|HAMAP-Rule:MF_01161}; DE AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; DE AltName: Full=tRNA(Ile)-lysidine synthetase {ECO:0000255|HAMAP-Rule:MF_01161}; GN Name=tilS {ECO:0000255|HAMAP-Rule:MF_01161}; GN OrderedLocusNames=HP_0728; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Ligates lysine onto the cytidine present at position 34 CC of the AUA codon-specific tRNA(Ile) that contains the anticodon CC CAU, in an ATP-dependent manner. Cytidine is converted to CC lysidine, thus changing the amino acid specificity of the tRNA CC from methionine to isoleucine. {ECO:0000255|HAMAP-Rule:MF_01161}. CC -!- CATALYTIC ACTIVITY: (tRNA(Ile2))-cytidine(34) + L-lysine + ATP = CC (tRNA(Ile2))-lysidine(34) + AMP + diphosphate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_01161}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01161}. CC -!- DOMAIN: The N-terminal region contains the highly conserved SGGXDS CC motif, predicted to be a P-loop motif involved in ATP binding. CC -!- SIMILARITY: Belongs to the tRNA(Ile)-lysidine synthase family. CC {ECO:0000255|HAMAP-Rule:MF_01161}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07779.1; -; Genomic_DNA. DR PIR; H64610; H64610. DR RefSeq; NP_207522.1; NC_000915.1. DR RefSeq; WP_010875536.1; NC_000915.1. DR ProteinModelPortal; O25428; -. DR STRING; 85962.HP0728; -. DR PaxDb; O25428; -. DR PRIDE; O25428; -. DR EnsemblBacteria; AAD07779; AAD07779; HP_0728. DR GeneID; 899324; -. DR KEGG; hpy:HP0728; -. DR PATRIC; 20592743; VBIHelPyl33062_0760. DR eggNOG; ENOG4105D3U; Bacteria. DR eggNOG; COG0037; LUCA. DR KO; K04075; -. DR OMA; IQSFKFL; -. DR OrthoDB; EOG6NKR0V; -. DR BioCyc; HPY:HP0728-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IEA:UniProtKB-HAMAP. DR GO; GO:0006400; P:tRNA modification; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_01161; tRNA_Ile_lys_synt; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR011063; TilS/TtcA_N. DR InterPro; IPR012094; tRNA_Ile_lys_synt. DR InterPro; IPR012795; tRNA_Ile_lys_synt_N. DR PANTHER; PTHR11807:SF2; PTHR11807:SF2; 1. DR Pfam; PF01171; ATP_bind_3; 1. DR TIGRFAMs; TIGR02432; lysidine_TilS_N; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; Ligase; Nucleotide-binding; KW Reference proteome; tRNA processing. FT CHAIN 1 336 tRNA(Ile)-lysidine synthase. FT /FTId=PRO_0000181705. FT NP_BIND 21 26 ATP. {ECO:0000255|HAMAP-Rule:MF_01161}. SQ SEQUENCE 336 AA; 39763 MW; 3AF54BC60F202F86 CRC64; MQDFKTHLEP LKEGKNLLGF SGGLDSTCLF FLLVGENIVF DIALVDYNTQ KQRLEIIQHA QKLAKTHHKK CYIHHAPKIA HNFEMQARKI RYDFFETLIK EHSYKHLILA HHLNDRLEWF LMQLSKGAGL NTLLSFQAYE KRESYAIVRP LLYTPKDTLK TLAKDLKFFE DDSNSSLKFK RNCFRKNYAN SLMQDYSKGI IQSFKFLDQE KERLYPLTIV SQMHGITFFK YSQNALFMVD KILKQKGYVL SFSQKEEIKR SFFSLEIAQK FIIESDKEHV FIALKPPKTL SMPKDFKDRA RRLDIPKRLR PVLYAEFLKQ PTHDFLTRFK QSLMDL // ID TPIS_HELPY Reviewed; 234 AA. AC P56076; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 16-MAR-2016, entry version 105. DE RecName: Full=Triosephosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147, ECO:0000303|PubMed:17957775}; DE Short=TIM {ECO:0000255|HAMAP-Rule:MF_00147, ECO:0000303|PubMed:17957775}; DE Short=TPI {ECO:0000255|HAMAP-Rule:MF_00147}; DE EC=5.3.1.1 {ECO:0000255|HAMAP-Rule:MF_00147, ECO:0000269|PubMed:17957775}; DE AltName: Full=Triose-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147, ECO:0000303|PubMed:17957775}; GN Name=tpiA {ECO:0000255|HAMAP-Rule:MF_00147}; Synonyms=tpi; GN OrderedLocusNames=HP_0194; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 2-234 IN COMPLEX WITH RP SUBSTRATE ANALOG, FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL RP PROPERTIES, MUTAGENESIS OF LYS-183 AND ASP-213, MASS SPECTROMETRY, AND RP SUBUNIT. RX PubMed=17957775; DOI=10.1002/prot.21709; RA Chu C.H., Lai Y.J., Huang H., Sun Y.J.; RT "Kinetic and structural properties of triosephosphate isomerase from RT Helicobacter pylori."; RL Proteins 71:396-406(2008). CC -!- FUNCTION: Involved in the gluconeogenesis. Catalyzes CC stereospecifically the conversion of dihydroxyacetone phosphate CC (DHAP) to D-glyceraldehyde-3-phosphate (G3P). {ECO:0000255|HAMAP- CC Rule:MF_00147, ECO:0000269|PubMed:17957775}. CC -!- CATALYTIC ACTIVITY: D-glyceraldehyde 3-phosphate = glycerone CC phosphate. {ECO:0000255|HAMAP-Rule:MF_00147, CC ECO:0000269|PubMed:17957775}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=3.46 uM for D-glyceraldehyde 3-phosphate (at pH 7.5 and 25 CC degrees Celsius) {ECO:0000269|PubMed:17957775}; CC Note=Kcat is 88000 min(-1) for isomerase activity with D- CC glyceraldehyde 3-phosphate as substrate (at pH 7.5 and 25 CC degrees Celsius). {ECO:0000269|PubMed:17957775}; CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC {ECO:0000255|HAMAP-Rule:MF_00147}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3- CC phosphate from glycerone phosphate: step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_00147}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00147, CC ECO:0000269|PubMed:17957775}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00147}. CC -!- MASS SPECTROMETRY: Mass=28108; Method=Unknown; Range=1-234; CC Evidence={ECO:0000269|PubMed:17957775}; CC -!- SIMILARITY: Belongs to the triosephosphate isomerase family. CC {ECO:0000255|HAMAP-Rule:MF_00147}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07261.1; -; Genomic_DNA. DR PIR; B64544; B64544. DR RefSeq; NP_206993.1; NC_000915.1. DR RefSeq; WP_000160988.1; NC_018939.1. DR PDB; 2JGQ; X-ray; 2.30 A; A/B=2-234. DR PDBsum; 2JGQ; -. DR ProteinModelPortal; P56076; -. DR SMR; P56076; 2-234. DR DIP; DIP-3273N; -. DR IntAct; P56076; 5. DR MINT; MINT-166065; -. DR STRING; 85962.HP0194; -. DR PaxDb; P56076; -. DR PRIDE; P56076; -. DR EnsemblBacteria; AAD07261; AAD07261; HP_0194. DR GeneID; 899983; -. DR KEGG; heo:C694_00965; -. DR KEGG; hpy:HP0194; -. DR PATRIC; 20591609; VBIHelPyl33062_0204. DR eggNOG; ENOG4105CP7; Bacteria. DR eggNOG; COG0149; LUCA. DR KO; K01803; -. DR OMA; TKIAMAN; -. DR OrthoDB; EOG66QM23; -. DR BioCyc; HPY:HP0194-MONOMER; -. DR BRENDA; 5.3.1.1; 2604. DR SABIO-RK; P56076; -. DR UniPathway; UPA00109; UER00189. DR UniPathway; UPA00138; -. DR EvolutionaryTrace; P56076; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004807; F:triose-phosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00147_B; TIM_B; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR022896; TrioseP_Isoase_bac/euk. DR InterPro; IPR000652; Triosephosphate_isomerase. DR InterPro; IPR020861; Triosephosphate_isomerase_AS. DR PANTHER; PTHR21139; PTHR21139; 1. DR Pfam; PF00121; TIM; 1. DR SUPFAM; SSF51351; SSF51351; 1. DR PROSITE; PS00171; TIM_1; 1. DR PROSITE; PS51440; TIM_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Gluconeogenesis; KW Glycolysis; Isomerase; Pentose shunt; Reference proteome. FT CHAIN 1 234 Triosephosphate isomerase. FT /FTId=PRO_0000090228. FT REGION 8 10 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00147, FT ECO:0000269|PubMed:17957775}. FT REGION 218 219 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00147, FT ECO:0000269|PubMed:17957775}. FT ACT_SITE 90 90 Electrophile. {ECO:0000255|HAMAP- FT Rule:MF_00147}. FT ACT_SITE 159 159 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00147}. FT BINDING 165 165 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00147, FT ECO:0000269|PubMed:17957775}. FT BINDING 197 197 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00147, FT ECO:0000269|PubMed:17957775}. FT MUTAGEN 183 183 K->A: 3-fold decrease of the affinity and FT slight decrease of the catalytic FT efficiency. FT {ECO:0000269|PubMed:17957775}. FT MUTAGEN 183 183 K->S: The affinity and the catalytic FT efficiency are comparable to the wild- FT type. {ECO:0000269|PubMed:17957775}. FT MUTAGEN 213 213 D->A: The affinity and the catalytic FT efficiency are comparable to the wild- FT type. {ECO:0000269|PubMed:17957775}. FT MUTAGEN 213 213 D->Q: The affinity and the catalytic FT efficiency are comparable to the wild- FT type. {ECO:0000269|PubMed:17957775}. FT STRAND 4 8 {ECO:0000244|PDB:2JGQ}. FT HELIX 15 28 {ECO:0000244|PDB:2JGQ}. FT HELIX 31 33 {ECO:0000244|PDB:2JGQ}. FT TURN 34 36 {ECO:0000244|PDB:2JGQ}. FT STRAND 37 40 {ECO:0000244|PDB:2JGQ}. FT TURN 43 45 {ECO:0000244|PDB:2JGQ}. FT STRAND 52 56 {ECO:0000244|PDB:2JGQ}. FT STRAND 62 68 {ECO:0000244|PDB:2JGQ}. FT HELIX 75 80 {ECO:0000244|PDB:2JGQ}. FT STRAND 85 88 {ECO:0000244|PDB:2JGQ}. FT HELIX 91 95 {ECO:0000244|PDB:2JGQ}. FT HELIX 101 113 {ECO:0000244|PDB:2JGQ}. FT STRAND 117 122 {ECO:0000244|PDB:2JGQ}. FT HELIX 126 131 {ECO:0000244|PDB:2JGQ}. FT HELIX 133 144 {ECO:0000244|PDB:2JGQ}. FT STRAND 154 158 {ECO:0000244|PDB:2JGQ}. FT HELIX 161 163 {ECO:0000244|PDB:2JGQ}. FT HELIX 172 185 {ECO:0000244|PDB:2JGQ}. FT STRAND 192 197 {ECO:0000244|PDB:2JGQ}. FT TURN 200 202 {ECO:0000244|PDB:2JGQ}. FT HELIX 203 207 {ECO:0000244|PDB:2JGQ}. FT STRAND 214 218 {ECO:0000244|PDB:2JGQ}. FT HELIX 219 222 {ECO:0000244|PDB:2JGQ}. FT HELIX 224 231 {ECO:0000244|PDB:2JGQ}. SQ SEQUENCE 234 AA; 26708 MW; AFEB4FF92D5BC4D3 CRC64; MTKIAMANFK SAMPIFKSHA YLKELEKTLK PQHFDRVFVF PDFFGLLPNS FLHFTLGVQN AYPRDCGAFT GEITSKHLEE LKIHTLLIGH SERRTLLKES PSFLKEKFDF FKSKNFKIVY CIGEELTTRE KGFKAVKEFL SEQLENIDLN YPNLVVAYEP IWAIGTKKSA SLEDIYLTHG FLKQILNQKT PLLYGGSVNT QNAKEILGID SVDGLLIGSA SWELENFKTI ISFL // ID TRPB_HELPY Reviewed; 393 AA. AC P56142; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 105. DE RecName: Full=Tryptophan synthase beta chain; DE EC=4.2.1.20; GN Name=trpB; OrderedLocusNames=HP_1278; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The beta subunit is responsible for the synthesis of L- CC tryptophan from indole and L-serine. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: L-serine + 1-C-(indol-3-yl)glycerol 3- CC phosphate = L-tryptophan + D-glyceraldehyde 3-phosphate + H(2)O. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 5/5. CC -!- SUBUNIT: Tetramer of two alpha and two beta chains. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TrpB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08323.1; -; Genomic_DNA. DR PIR; F64679; F64679. DR RefSeq; NP_208070.1; NC_000915.1. DR RefSeq; WP_001034280.1; NC_018939.1. DR ProteinModelPortal; P56142; -. DR SMR; P56142; 6-390. DR DIP; DIP-3612N; -. DR IntAct; P56142; 3. DR MINT; MINT-167530; -. DR STRING; 85962.HP1278; -. DR PaxDb; P56142; -. DR PRIDE; P56142; -. DR EnsemblBacteria; AAD08323; AAD08323; HP_1278. DR GeneID; 900204; -. DR KEGG; heo:C694_06605; -. DR KEGG; hpy:HP1278; -. DR PATRIC; 20593933; VBIHelPyl33062_1337. DR eggNOG; ENOG4105CG0; Bacteria. DR eggNOG; COG0133; LUCA. DR KO; K01696; -. DR OMA; IPEMLYP; -. DR OrthoDB; EOG6GFGH7; -. DR BioCyc; HPY:HP1278-MONOMER; -. DR UniPathway; UPA00035; UER00044. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004834; F:tryptophan synthase activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00133; Trp_synth_beta; 1. DR InterPro; IPR006653; Trp_synth_b_CS. DR InterPro; IPR006654; Trp_synth_beta. DR InterPro; IPR023026; Trp_synth_beta/beta-like. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR PANTHER; PTHR10314:SF3; PTHR10314:SF3; 1. DR Pfam; PF00291; PALP; 1. DR PIRSF; PIRSF001413; Trp_syn_beta; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR TIGRFAMs; TIGR00263; trpB; 1. DR PROSITE; PS00168; TRP_SYNTHASE_BETA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Lyase; Pyridoxal phosphate; Reference proteome; KW Tryptophan biosynthesis. FT CHAIN 1 393 Tryptophan synthase beta chain. FT /FTId=PRO_0000098955. FT MOD_RES 85 85 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 393 AA; 42684 MW; 3370A1BCD5B89371 CRC64; MNKKAYFGEF GGSFVSELLV PALRELEQAF DACLKDEKFQ KEYFRLLKDF VGRPSPLTLC QNIVSNPKVK LYLKREDLIH GGAHKTNQAL GQALLAKKMG KTRIIAETGA GQHGVATAIA CALLNLKCVV FMGSKDIKRQ EMNVFRMHLL GAEVREVNSG SATLKDAVNE ALRDWASSYK DTHYLLGTAA GPHPYPTMVK TFQKMIGDEV KSQILEKENR LPDYVIACVG GGSNAIGIFS AFLNDKEVKL IGVEPAGLGL ETNKHGATLN KGRVGILHGN KTYLLQDDEG QIAESHSISA GLDYPGVGPE HSYLKESGRA VYESASDAEA LEAFKLLCQK EGIIPALESS HALAYALKLA QKCEEESIIV VNLSGRGDKD LSTVYNALKG GLK // ID TRMB_HELPY Reviewed; 393 AA. AC O25443; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=tRNA (guanine-N(7)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01057}; DE EC=2.1.1.33 {ECO:0000255|HAMAP-Rule:MF_01057}; DE AltName: Full=tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01057}; DE AltName: Full=tRNA(m7G46)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01057}; GN Name=trmB {ECO:0000255|HAMAP-Rule:MF_01057}; GN OrderedLocusNames=HP_0747; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the formation of N(7)-methylguanine at CC position 46 (m7G46) in tRNA. {ECO:0000255|HAMAP-Rule:MF_01057}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + guanine(46) in tRNA CC = S-adenosyl-L-homocysteine + N(7)-methylguanine(46) in tRNA. CC {ECO:0000255|HAMAP-Rule:MF_01057}. CC -!- PATHWAY: tRNA modification; N(7)-methylguanine-tRNA biosynthesis. CC {ECO:0000255|HAMAP-Rule:MF_01057}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. TrmB family. {ECO:0000255|HAMAP- CC Rule:MF_01057}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07796.1; -; Genomic_DNA. DR PIR; C64613; C64613. DR RefSeq; NP_207540.1; NC_000915.1. DR RefSeq; WP_001119909.1; NC_018939.1. DR ProteinModelPortal; O25443; -. DR DIP; DIP-3501N; -. DR IntAct; O25443; 1. DR MINT; MINT-170407; -. DR STRING; 85962.HP0747; -. DR PaxDb; O25443; -. DR PRIDE; O25443; -. DR EnsemblBacteria; AAD07796; AAD07796; HP_0747. DR GeneID; 899331; -. DR KEGG; heo:C694_03845; -. DR KEGG; hpy:HP0747; -. DR PATRIC; 20592783; VBIHelPyl33062_0780. DR eggNOG; ENOG4105CZ1; Bacteria. DR eggNOG; COG0220; LUCA. DR KO; K03439; -. DR OMA; HFPVPWN; -. DR OrthoDB; EOG6K6VBC; -. DR BioCyc; HPY:HP0747-MONOMER; -. DR UniPathway; UPA00989; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008176; F:tRNA (guanine-N7-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_01057; tRNA_methyltr_TrmB; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR003358; tRNA_(Gua-N-7)_MeTrfase_Trmb. DR Pfam; PF02390; Methyltransf_4; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00091; TIGR00091; 1. DR PROSITE; PS51625; SAM_MT_TRMB; 1. PE 3: Inferred from homology; KW Complete proteome; Methyltransferase; Reference proteome; KW S-adenosyl-L-methionine; Transferase; tRNA processing. FT CHAIN 1 393 tRNA (guanine-N(7)-)-methyltransferase. FT /FTId=PRO_0000171335. FT BINDING 124 124 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01057}. FT BINDING 149 149 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01057}. FT BINDING 176 176 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01057}. FT BINDING 232 232 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01057}. SQ SEQUENCE 393 AA; 45774 MW; C376EF02D33F71D1 CRC64; MPHFLAKLDF KPLEYPLIEG DFCFHREFLS LKNPTKSCVY ASFKDRIFLL QKIRRANDFL IKSEKATPLK REVLKQALRI YSQSFEVISH NLQENSKHAS GKKTLDLGTF EDFIQKNQAP ILIEIGFGSG RHLIELAKNN PTKTCLGIEI HTPSIAQALK QIELLDLKNL HILQGDGRLV LESMPNHRCE KIFVHFPVPW NEKKHRRVLS EKFLNEALRV LKPRGFLELR TDDSLYFEDS LKLALKNFQC EIEIKKNAQI PVVSKYEARW NKLKKDIYDL RIYSLEWNET PFDNHAFDFS FDTITISKKS VGTILKTKKI IQEGYFVHVC NIYENKGDFL VELSMGDFDW PVRLFVLLTE NQIFYLNKSP LKTLNNHKAH LLLQNILSQK GIG // ID TRPC_HELPY Reviewed; 452 AA. AC O25867; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Tryptophan biosynthesis protein TrpCF; DE Includes: DE RecName: Full=Indole-3-glycerol phosphate synthase; DE Short=IGPS; DE EC=4.1.1.48; DE Includes: DE RecName: Full=N-(5'-phospho-ribosyl)anthranilate isomerase; DE Short=PRAI; DE EC=5.3.1.24; GN Name=trpC; OrderedLocusNames=HP_1279; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Bifunctional enzyme that catalyzes two sequential steps CC of tryptophan biosynthetic pathway. The first reaction is CC catalyzed by the isomerase, coded by the TrpF domain; the second CC reaction is catalyzed by the synthase, coded by the TrpC domain CC (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: N-(5-phospho-beta-D-ribosyl)anthranilate = 1- CC (2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate. CC -!- CATALYTIC ACTIVITY: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5- CC phosphate = 1-C-(3-indolyl)-glycerol 3-phosphate + CO(2) + H(2)O. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 3/5. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 4/5. CC -!- SIMILARITY: In the N-terminal section; belongs to the TrpC family. CC {ECO:0000305}. CC -!- SIMILARITY: In the C-terminal section; belongs to the TrpF family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08324.1; -; Genomic_DNA. DR PIR; G64679; G64679. DR RefSeq; NP_208071.1; NC_000915.1. DR RefSeq; WP_001141446.1; NC_018939.1. DR ProteinModelPortal; O25867; -. DR SMR; O25867; 1-256. DR IntAct; O25867; 2. DR MINT; MINT-181675; -. DR STRING; 85962.HP1279; -. DR PaxDb; O25867; -. DR PRIDE; O25867; -. DR EnsemblBacteria; AAD08324; AAD08324; HP_1279. DR GeneID; 898793; -. DR KEGG; heo:C694_06610; -. DR KEGG; hpy:HP1279; -. DR PATRIC; 20593935; VBIHelPyl33062_1338. DR eggNOG; ENOG4105DK0; Bacteria. DR eggNOG; COG0134; LUCA. DR eggNOG; COG0135; LUCA. DR KO; K13498; -. DR OMA; SFILECK; -. DR OrthoDB; EOG6WT8JX; -. DR BioCyc; HPY:HP1279-MONOMER; -. DR UniPathway; UPA00035; UER00042. DR UniPathway; UPA00035; UER00043. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004425; F:indole-3-glycerol-phosphate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0004640; F:phosphoribosylanthranilate isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 2. DR HAMAP; MF_00134_B; IGPS_B; 1. DR HAMAP; MF_00135; PRAI; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR013798; Indole-3-glycerol_P_synth. DR InterPro; IPR001468; Indole-3-GlycerolPSynthase_CS. DR InterPro; IPR001240; PRAI. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00218; IGPS; 1. DR Pfam; PF00697; PRAI; 1. DR SUPFAM; SSF51366; SSF51366; 2. DR PROSITE; PS00614; IGPS; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Decarboxylase; Isomerase; Lyase; KW Multifunctional enzyme; Reference proteome; Tryptophan biosynthesis. FT CHAIN 1 452 Tryptophan biosynthesis protein TrpCF. FT /FTId=PRO_0000154280. FT REGION 1 253 Indole-3-glycerol phosphate synthase. FT REGION 254 448 N-(5'-phosphoribosyl)anthranilate FT isomerase. SQ SEQUENCE 452 AA; 50858 MW; E5451CE56B75145E CRC64; MPSVLENILK DKLLEVSDLK KNHALPININ PSDRDFKKAL LEKKTSFILE CKKASPSKGL IRKDFDLLKI TKTYEKFASC ISVLADSKYF LGSYENIKIV SQHSTKPILC KDFIIDAFQI KLARMMGANA VLLMLSVLDD KNYLELFNLA KSLNMSVLTE VSNQQEIEHL LKLQYDIIGI NNRDLHTLKT DINHTLKLRP LLPKDALIIS ESGIYSHAQI KALAPYVNGF LVGSSLMKEK DLKKACIKLI LGENKVCGLT RIKDAKAVYK NHFIYGGLIF EKSSPRYIKP KEALKITKAV KKLDFVGVFV KDSIKKIQKI VKKLDLKAVQ LYGYSQKEIA QLKKALPKTC AIWQVISVMS AKDLVPKTKE ASLILYDTKG DKMGGNGVSF DWEILENVKT PFMLAGGLNL DNIQKALKVE ALGLDFNSGL EISPGIKNKD KIKRLARILR EY // ID TRPD_HELPY Reviewed; 335 AA. AC P56737; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2000, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; DE EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211}; GN Name=trpD {ECO:0000255|HAMAP-Rule:MF_00211}; GN OrderedLocusNames=HP_1280; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the transfer of the phosphoribosyl group of 5- CC phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield CC N-(5'-phosphoribosyl)-anthranilate (PRA). {ECO:0000255|HAMAP- CC Rule:MF_00211}. CC -!- CATALYTIC ACTIVITY: N-(5-phospho-D-ribosyl)-anthranilate + CC diphosphate = anthranilate + 5-phospho-alpha-D-ribose 1- CC diphosphate. {ECO:0000255|HAMAP-Rule:MF_00211}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00211}; CC Note=Binds 2 magnesium ions per monomer. {ECO:0000255|HAMAP- CC Rule:MF_00211}; CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 2/5. {ECO:0000255|HAMAP- CC Rule:MF_00211}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00211}. CC -!- SIMILARITY: Belongs to the anthranilate phosphoribosyltransferase CC family. {ECO:0000255|HAMAP-Rule:MF_00211}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; H64679; H64679. DR RefSeq; NP_208072.1; NC_000915.1. DR RefSeq; WP_000658921.1; NC_018939.1. DR ProteinModelPortal; P56737; -. DR STRING; 85962.HP1280; -. DR PaxDb; P56737; -. DR PRIDE; P56737; -. DR GeneID; 899696; -. DR KEGG; heo:C694_06615; -. DR KEGG; hpy:HP1280; -. DR eggNOG; ENOG4108I0Q; Bacteria. DR eggNOG; COG0547; LUCA. DR KO; K00766; -. DR OMA; MIVLNAG; -. DR OrthoDB; EOG6D5G6B; -. DR UniPathway; UPA00035; UER00041. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004048; F:anthranilate phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1030.10; -; 1. DR HAMAP; MF_00211; TrpD; 1. DR InterPro; IPR005940; Anthranilate_Pribosyl_Tfrase. DR InterPro; IPR000312; Glycosyl_Trfase_fam3. DR InterPro; IPR017459; Glycosyl_Trfase_fam3_N_dom. DR Pfam; PF02885; Glycos_trans_3N; 1. DR Pfam; PF00591; Glycos_transf_3; 1. DR SUPFAM; SSF47648; SSF47648; 1. DR SUPFAM; SSF52418; SSF52418; 1. DR TIGRFAMs; TIGR01245; trpD; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Glycosyltransferase; Magnesium; Metal-binding; KW Reference proteome; Transferase; Tryptophan biosynthesis. FT CHAIN 1 335 Anthranilate phosphoribosyltransferase. FT /FTId=PRO_0000154449. FT REGION 82 83 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT REGION 89 92 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT REGION 107 115 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT METAL 91 91 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 223 223 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 224 224 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 224 224 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 79 79 Anthranilate 1; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT BINDING 79 79 Phosphoribosylpyrophosphate; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 87 87 Phosphoribosylpyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT BINDING 119 119 Phosphoribosylpyrophosphate; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 165 165 Anthranilate 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. SQ SEQUENCE 335 AA; 36710 MW; 061D6399FFBF739C CRC64; MKEILNALYH QKDLNDEEVK KLFTLIIHEK VSPVQLGAIL CALKIKGESF KEISVAATTL LEHAPKPFNS GLDLIDNCGT GGDGLKTINI STIAALIASS MGLSMAKHGS RSVSSHSGSA DLLENLGVNI EMNPTQLENC FKQTHFGFLF APLYHQSFKK SAPLRKELFT KTIFNCLGPL INPLRPKIQL LGVYDKSLCK TMALALKALG VKRAMVVNGG GTDEIVLHDI THACELKNNG ILEYDLSAKD FDLPPYDLKE LQIENAQEST QACLDILENK GKDSHTMVVV ANVASLLYLS HKAKDLKEGV SMTLEHLKTK APYAHLQKII RLSHA // ID TOLB_HELPY Reviewed; 417 AA. AC O25751; Q9RNF5; DT 11-JUL-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 88. DE RecName: Full=Protein TolB {ECO:0000255|HAMAP-Rule:MF_00671}; DE Flags: Precursor; GN Name=tolB {ECO:0000255|HAMAP-Rule:MF_00671}; GN OrderedLocusNames=HP_1126; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=RU-1; RA Kolesnikow T., Gekas S., Lee A.; RT "Identification of Helicobacter pylori antigens."; RL Submitted (AUG-1999) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the TonB-independent uptake of proteins. CC {ECO:0000255|HAMAP-Rule:MF_00671}. CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000255|HAMAP-Rule:MF_00671}. CC -!- SIMILARITY: Belongs to the TolB family. {ECO:0000255|HAMAP- CC Rule:MF_00671}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08170.1; -; Genomic_DNA. DR EMBL; AF181881; AAF04275.1; -; Genomic_DNA. DR PIR; F64660; F64660. DR RefSeq; NP_207917.1; NC_000915.1. DR RefSeq; WP_001269995.1; NC_018939.1. DR ProteinModelPortal; O25751; -. DR STRING; 85962.HP1126; -. DR PaxDb; O25751; -. DR PRIDE; O25751; -. DR EnsemblBacteria; AAD08170; AAD08170; HP_1126. DR GeneID; 899663; -. DR KEGG; heo:C694_05815; -. DR KEGG; hpy:HP1126; -. DR PATRIC; 20593597; VBIHelPyl33062_1178. DR eggNOG; COG0823; LUCA. DR KO; K03641; -. DR OMA; DYPIVSL; -. DR OrthoDB; EOG679T7X; -. DR BioCyc; HPY:HP1126-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell. DR GO; GO:0017038; P:protein import; IEA:UniProtKB-HAMAP. DR Gene3D; 2.130.10.10; -; 1. DR HAMAP; MF_00671; TolB; 1. DR InterPro; IPR011659; PD40. DR InterPro; IPR014167; Tol-Pal_propeller_TolB. DR InterPro; IPR007195; TolB_N. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF07676; PD40; 1. DR SUPFAM; SSF52964; SSF52964; 1. PE 3: Inferred from homology; KW Complete proteome; Periplasm; Protein transport; Reference proteome; KW Signal; Transport. FT SIGNAL 1 16 {ECO:0000255|HAMAP-Rule:MF_00671}. FT CHAIN 17 417 Protein TolB. FT /FTId=PRO_0000034658. FT CONFLICT 10 10 H -> C (in Ref. 2; AAF04275). FT {ECO:0000305}. FT CONFLICT 58 58 K -> R (in Ref. 2; AAF04275). FT {ECO:0000305}. FT CONFLICT 109 114 DTGTLK -> NTSALV (in Ref. 2; AAF04275). FT {ECO:0000305}. FT CONFLICT 122 124 VSL -> LSA (in Ref. 2; AAF04275). FT {ECO:0000305}. FT CONFLICT 353 353 T -> A (in Ref. 2; AAF04275). FT {ECO:0000305}. FT CONFLICT 387 387 P -> S (in Ref. 2; AAF04275). FT {ECO:0000305}. SQ SEQUENCE 417 AA; 47798 MW; 05428A5B251EDBE5 CRC64; MRYLWLFLIH TIGLFATDKT LDIIKTIQKL PKIEVRYSID NDANYALKLH EVLANDLKTS QHFDVSQNKD QGAINYAELK DKKVHLVALV SVAVENGNKI SRLKLYDVDT GTLKKTFDYP IVSLDLYPFA AHNMAIVVND YLKAPSIAWM KRLIVFSKYI GPGITNIALA DYTMRYQKEI IKNNRLNIFP KWANAEQTEF YYTQYGERTP MILKYNIQKA THENIASSQG MAVVSSVSSD GSKILMSLAP DGQPDVYLYD THKKTKTKIT RYPGIDVSGV FLEDDKSMAF VSDRSGYPNI YMKKLGLKES AEQLLYEGRS NESIDAYKDS IVYVSRENLN EFGKTVFNLN LITLNSKYIR RLTVNGSNQM PRFSTDGRNI MYIKKTPQEY AMGLILLDYN QSFLFPLKNV KIQAFDW // ID TONB_HELPY Reviewed; 285 AA. AC O25899; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Protein TonB; GN Name=tonB; OrderedLocusNames=HP_1341; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Interacts with outer membrane receptor proteins that CC carry out high-affinity binding and energy dependent uptake into CC the periplasmic space of specific substrates. It could act to CC transduce energy from the cytoplasmic membrane to specific energy- CC requiring processes in the outer membrane, resulting in the CC release into the periplasm of ligands bound by these outer CC membrane proteins (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Single- CC pass membrane protein {ECO:0000250}; Periplasmic side CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TonB family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08383.1; -; Genomic_DNA. DR PIR; E64687; E64687. DR RefSeq; NP_208133.1; NC_000915.1. DR RefSeq; WP_000703807.1; NC_018939.1. DR ProteinModelPortal; O25899; -. DR IntAct; O25899; 1. DR MINT; MINT-4065780; -. DR STRING; 85962.HP1341; -. DR PaxDb; O25899; -. DR PRIDE; O25899; -. DR EnsemblBacteria; AAD08383; AAD08383; HP_1341. DR GeneID; 900193; -. DR KEGG; heo:C694_06920; -. DR KEGG; hpy:HP1341; -. DR PATRIC; 20594065; VBIHelPyl33062_1403. DR eggNOG; ENOG41067XB; Bacteria. DR eggNOG; COG0810; LUCA. DR KO; K03832; -. DR OMA; YAIGFGY; -. DR OrthoDB; EOG6NGVVD; -. DR BioCyc; HPY:HP1341-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0030288; C:outer membrane-bounded periplasmic space; IEA:InterPro. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0031992; F:energy transducer activity; IEA:InterPro. DR GO; GO:0015343; F:siderophore transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR InterPro; IPR003538; TonB. DR InterPro; IPR006260; TonB_C. DR Pfam; PF03544; TonB_C; 1. DR PRINTS; PR01374; TONBPROTEIN. DR TIGRFAMs; TIGR01352; tonB_Cterm; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Protein transport; Reference proteome; Repeat; Signal-anchor; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 285 Protein TonB. FT /FTId=PRO_0000196198. FT TOPO_DOM 1 14 Cytoplasmic. {ECO:0000255}. FT TRANSMEM 15 35 Helical; Signal-anchor. {ECO:0000255}. FT TOPO_DOM 36 285 Periplasmic. {ECO:0000255}. SQ SEQUENCE 285 AA; 31585 MW; 3897A8BB7B70BDF8 CRC64; MKISPSPRKL SKVSTSVSFL ISFALYAIGF GYFLLREDAP EPLAQAGTTK VTMSLASINT NSNTKTNAES AKPKEEPKEK PKKEEPKKEE PKKEVTKPKP KPKPKPKPKP KPKPEPKPEP KPEPKPEPKV EEVKKEEPKE EPKKEEAKEE AKEKSAPKQV TTKDIVKEKD KQEESNKTSE GATSEAQAYN PGVSNEFLMK IQTAISSKNR YPKMAQIRGI EGEVLVSFTI NADGSVTDIK VVKSNTTDIL NHAALEAIKS AAHLFPKPEE TVHLKIPIAY SLKED // ID TRPG_HELPY Reviewed; 194 AA. AC O25868; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 17-FEB-2016, entry version 97. DE RecName: Full=Anthranilate synthase component 2; DE Short=AS; DE Short=ASII; DE EC=4.1.3.27; DE AltName: Full=Anthranilate synthase, GATase component; DE AltName: Full=Anthranilate synthase, glutamine amidotransferase component; GN Name=trpG; OrderedLocusNames=HP_1281; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of a heterotetrameric complex that catalyzes the CC two-step biosynthesis of anthranilate, an intermediate in the CC biosynthesis of L-tryptophan. In the first step, the glutamine- CC binding beta subunit (TrpG) of anthranilate synthase (AS) provides CC the glutamine amidotransferase activity which generates ammonia as CC a substrate that, along with chorismate, is used in the second CC step, catalyzed by the large alpha subunit of AS (TrpE) to produce CC anthranilate. In the absence of TrpG, TrpE can synthesize CC anthranilate directly from chorismate and high concentrations of CC ammonia (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Chorismate + L-glutamine = anthranilate + CC pyruvate + L-glutamate. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 1/5. CC -!- SUBUNIT: Heterotetramer consisting of two non-identical subunits: CC a beta subunit (TrpG) and a large alpha subunit (TrpE). CC {ECO:0000250}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000255|PROSITE-ProRule:PRU00605}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08325.1; -; Genomic_DNA. DR PIR; A64680; A64680. DR RefSeq; NP_208073.1; NC_000915.1. DR RefSeq; WP_000688223.1; NC_018939.1. DR ProteinModelPortal; O25868; -. DR IntAct; O25868; 1. DR STRING; 85962.HP1281; -. DR MEROPS; C26.960; -. DR PaxDb; O25868; -. DR PRIDE; O25868; -. DR EnsemblBacteria; AAD08325; AAD08325; HP_1281. DR GeneID; 898814; -. DR KEGG; heo:C694_06620; -. DR KEGG; hpy:HP1281; -. DR PATRIC; 20593939; VBIHelPyl33062_1340. DR eggNOG; ENOG4105DDQ; Bacteria. DR eggNOG; COG0512; LUCA. DR KO; K01658; -. DR OMA; LPICAFQ; -. DR OrthoDB; EOG6M9F11; -. DR BioCyc; HPY:HP1281-MONOMER; -. DR UniPathway; UPA00035; UER00040. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004049; F:anthranilate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.880; -; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR006221; TrpG/PapA_dom. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR00566; trpG_papA; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Glutamine amidotransferase; Lyase; KW Reference proteome; Tryptophan biosynthesis. FT CHAIN 1 194 Anthranilate synthase component 2. FT /FTId=PRO_0000056884. FT DOMAIN 2 194 Glutamine amidotransferase type-1. FT {ECO:0000255|PROSITE-ProRule:PRU00605}. FT REGION 57 59 Glutamine binding. FT {ECO:0000250|UniProtKB:P00900}. FT REGION 134 135 Glutamine binding. FT {ECO:0000250|UniProtKB:P00900}. FT ACT_SITE 84 84 Nucleophile; for GATase activity. FT {ECO:0000255|PROSITE-ProRule:PRU00605}. FT ACT_SITE 170 170 For GATase activity. FT {ECO:0000255|PROSITE-ProRule:PRU00605}. FT ACT_SITE 172 172 For GATase activity. FT {ECO:0000255|PROSITE-ProRule:PRU00605}. FT BINDING 88 88 Glutamine. FT {ECO:0000250|UniProtKB:P00900}. SQ SEQUENCE 194 AA; 21438 MW; A03FD6E279345659 CRC64; MKIFFIDNFD SFSYNLVYEL ECLGYEVAVY QNDIDPSYLM DLMNEESKTP LLFISPGPGN PNSSGNLLKI IAMAKKKFPI LGICLGLQAL AQSYGAKIIR SKEIVHGKAT AIALKKHAVF KGLGESMVVG RYHSLMASGL PKNLEVIAEH DNIPMAIVNE EDKILAYQFH PESIMTLQGR ALLEQSVGFL EGLL // ID TRUD_HELPY Reviewed; 381 AA. AC P55985; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=tRNA pseudouridine synthase D {ECO:0000255|HAMAP-Rule:MF_01082}; DE EC=5.4.99.27 {ECO:0000255|HAMAP-Rule:MF_01082}; DE AltName: Full=tRNA pseudouridine(13) synthase {ECO:0000255|HAMAP-Rule:MF_01082}; DE AltName: Full=tRNA pseudouridylate synthase D {ECO:0000255|HAMAP-Rule:MF_01082}; DE AltName: Full=tRNA-uridine isomerase D {ECO:0000255|HAMAP-Rule:MF_01082}; GN Name=truD {ECO:0000255|HAMAP-Rule:MF_01082}; GN OrderedLocusNames=HP_0926; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Responsible for synthesis of pseudouridine from uracil- CC 13 in transfer RNAs. {ECO:0000255|HAMAP-Rule:MF_01082}. CC -!- CATALYTIC ACTIVITY: tRNA uridine(13) = tRNA pseudouridine(13). CC {ECO:0000255|HAMAP-Rule:MF_01082}. CC -!- SIMILARITY: Belongs to the pseudouridine synthase TruD family. CC {ECO:0000255|HAMAP-Rule:MF_01082}. CC -!- SIMILARITY: Contains 1 TRUD domain. {ECO:0000255|HAMAP- CC Rule:MF_01082}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07971.1; -; Genomic_DNA. DR PIR; F64635; F64635. DR RefSeq; NP_207718.1; NC_000915.1. DR RefSeq; WP_001052415.1; NC_018939.1. DR ProteinModelPortal; P55985; -. DR STRING; 85962.HP0926; -. DR PaxDb; P55985; -. DR PRIDE; P55985; -. DR EnsemblBacteria; AAD07971; AAD07971; HP_0926. DR GeneID; 899455; -. DR KEGG; heo:C694_04765; -. DR KEGG; hpy:HP0926; -. DR PATRIC; 20593153; VBIHelPyl33062_0962. DR eggNOG; ENOG4106NZV; Bacteria. DR eggNOG; COG0585; LUCA. DR KO; K06176; -. DR OMA; GNRFFMR; -. DR OrthoDB; EOG6FRCSP; -. DR BioCyc; HPY:HP0926-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0031119; P:tRNA pseudouridine synthesis; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01082; TruD; 1. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR001656; PsdUridine_synth_TruD. DR InterPro; IPR020119; PsdUridine_synth_TruD_CS. DR InterPro; IPR011760; PsdUridine_synth_TruD_insert. DR PANTHER; PTHR13326; PTHR13326; 1. DR Pfam; PF01142; TruD; 2. DR SUPFAM; SSF55120; SSF55120; 2. DR TIGRFAMs; TIGR00094; tRNA_TruD_broad; 1. DR PROSITE; PS50984; TRUD; 1. DR PROSITE; PS01268; UPF0024; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; tRNA processing. FT CHAIN 1 381 tRNA pseudouridine synthase D. FT /FTId=PRO_0000152502. FT DOMAIN 160 335 TRUD. {ECO:0000255|HAMAP-Rule:MF_01082}. FT ACT_SITE 81 81 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_01082}. SQ SEQUENCE 381 AA; 44004 MW; B5816EF2ADBA4E56 CRC64; MNLNFMPLLH AYNHASIDFH FNSSARDFCV HEVPLYEFSN TGEHAVIQVR KSGLSTLEML QIFSQILGVR IAELGYAGLK DKNALTTQFI SLPKKYAPLL EKNTSNFQEK NLKILSLNYH HNKIKLGHLK GNRFFMRFKK MTPLNAQKTK QVLEQIAQFG MPNYFGSQRF GKFNDNHQEG LKILQNQTKF AHQKLNAFLI SSYQSYLFNA LLSKRLEISK IISAFSVKEN LEFFKQKNLS VDSDTLKTLK NQAHPFKILE GDVMCHYPYG KFFDALELEK EGERFLKKEV APTGLLDGKK ALYAKNLSLE IEKEFQHNLL SSHAKTLGSR RFFWVFVENV TSQYVKEKAQ FELGFYLPKG SYASALLKEI KHEKGENNDE F // ID TSAD_HELPY Reviewed; 340 AA. AC P55996; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 106. DE RecName: Full=tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01445}; DE EC=2.3.1.234 {ECO:0000255|HAMAP-Rule:MF_01445}; DE AltName: Full=N6-L-threonylcarbamoyladenine synthase {ECO:0000255|HAMAP-Rule:MF_01445}; DE Short=t(6)A synthase {ECO:0000255|HAMAP-Rule:MF_01445}; DE AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; DE AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; GN Name=tsaD {ECO:0000255|HAMAP-Rule:MF_01445}; Synonyms=gcp; GN OrderedLocusNames=HP_1584; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for the formation of a threonylcarbamoyl group CC on adenosine at position 37 (t(6)A37) in tRNAs that read codons CC beginning with adenine. Is involved in the transfer of the CC threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the CC N6 group of A37, together with TsaE and TsaB. TsaD likely plays a CC direct catalytic role in this reaction. {ECO:0000255|HAMAP- CC Rule:MF_01445}. CC -!- CATALYTIC ACTIVITY: L-threonylcarbamoyladenylate + adenine(37) in CC tRNA = AMP + N(6)-L-threonylcarbamoyladenine(37) in tRNA. CC {ECO:0000255|HAMAP-Rule:MF_01445}. CC -!- COFACTOR: CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01445}; CC Note=Binds 1 Fe(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01445}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01445}. CC -!- SIMILARITY: Belongs to the KAE1 / TsaD family. {ECO:0000255|HAMAP- CC Rule:MF_01445}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08622.1; -; Genomic_DNA. DR PIR; H64717; H64717. DR RefSeq; NP_208375.1; NC_000915.1. DR RefSeq; WP_000603684.1; NC_018939.1. DR ProteinModelPortal; P55996; -. DR IntAct; P55996; 1. DR STRING; 85962.HP1584; -. DR PaxDb; P55996; -. DR PRIDE; P55996; -. DR EnsemblBacteria; AAD08622; AAD08622; HP_1584. DR GeneID; 899707; -. DR KEGG; heo:C694_08205; -. DR KEGG; hpy:HP1584; -. DR PATRIC; 20594595; VBIHelPyl33062_1665. DR eggNOG; ENOG4105CPM; Bacteria. DR eggNOG; COG0533; LUCA. DR KO; K01409; -. DR OMA; YTKEPGL; -. DR OrthoDB; EOG6K402S; -. DR BioCyc; HPY:HP1584-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0061711; F:N(6)-L-threonylcarbamoyladenine synthase; IEA:UniProtKB-EC. DR GO; GO:0002949; P:tRNA threonylcarbamoyladenosine modification; IEA:InterPro. DR HAMAP; MF_01445; TsaD; 1. DR InterPro; IPR000905; Gcp-like_dom. DR InterPro; IPR017861; KAE1/TsaD. DR InterPro; IPR017860; Peptidase_M22_CS. DR InterPro; IPR022450; TsaD. DR Pfam; PF00814; Peptidase_M22; 1. DR PRINTS; PR00789; OSIALOPTASE. DR TIGRFAMs; TIGR00329; gcp_kae1; 1. DR TIGRFAMs; TIGR03723; T6A_TsaD_YgjD; 1. DR PROSITE; PS01016; GLYCOPROTEASE; 1. PE 3: Inferred from homology; KW Acyltransferase; Complete proteome; Cytoplasm; Iron; Metal-binding; KW Reference proteome; Transferase; tRNA processing. FT CHAIN 1 340 tRNA N6-adenosine FT threonylcarbamoyltransferase. FT /FTId=PRO_0000096965. FT REGION 134 138 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01445}. FT METAL 111 111 Iron. {ECO:0000255|HAMAP-Rule:MF_01445}. FT METAL 115 115 Iron. {ECO:0000255|HAMAP-Rule:MF_01445}. FT METAL 304 304 Iron. {ECO:0000255|HAMAP-Rule:MF_01445}. FT BINDING 167 167 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01445}. FT BINDING 180 180 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01445}. FT BINDING 276 276 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01445}. SQ SEQUENCE 340 AA; 37799 MW; BBD185F06B218AAD CRC64; MILSIESSCD DSSLALTRIE DAQLIAHFKI SQEKHHSSYG GVVPELASRL HAENLPLLLE RIKISLNKDF SKIKAIAITN QPGLSVTLIE GLMMAKALSL SLNLPLILED HLRGHVYSLF INEKQTCMPL SVLLVSGGHS LILEARDYEN IKIVATSLDD SFGESFDKVS KMLDLGYPGG PIVEKLALDY RHPNEPLMFP IPLKNSPNLA FSFSGLKNAV RLEVEKNAPN LNEAIKQKIG YHFQSAAIEH LIQQTKRYFK IKRPKIFGIV GGASQNLALR KAFENLCDAF DCKLVLAPLE FCSDNAAMIG RSSLEAYQKK RFVPLEKANI SPRTLLKSFE // ID TRUA_HELPY Reviewed; 242 AA. AC P56144; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 92. DE RecName: Full=tRNA pseudouridine synthase A {ECO:0000255|HAMAP-Rule:MF_00171}; DE EC=5.4.99.12 {ECO:0000255|HAMAP-Rule:MF_00171}; DE AltName: Full=tRNA pseudouridine(38-40) synthase {ECO:0000255|HAMAP-Rule:MF_00171}; DE AltName: Full=tRNA pseudouridylate synthase I {ECO:0000255|HAMAP-Rule:MF_00171}; DE AltName: Full=tRNA-uridine isomerase I {ECO:0000255|HAMAP-Rule:MF_00171}; GN Name=truA {ECO:0000255|HAMAP-Rule:MF_00171}; Synonyms=hisT; GN OrderedLocusNames=HP_0361; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Formation of pseudouridine at positions 38, 39 and 40 in CC the anticodon stem and loop of transfer RNAs. {ECO:0000255|HAMAP- CC Rule:MF_00171}. CC -!- CATALYTIC ACTIVITY: tRNA uridine(38-40) = tRNA pseudouridine(38- CC 40). {ECO:0000255|HAMAP-Rule:MF_00171}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00171}. CC -!- SIMILARITY: Belongs to the tRNA pseudouridine synthase TruA CC family. {ECO:0000255|HAMAP-Rule:MF_00171}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07429.1; -; Genomic_DNA. DR PIR; A64565; A64565. DR RefSeq; NP_207159.1; NC_000915.1. DR RefSeq; WP_001203260.1; NC_018939.1. DR ProteinModelPortal; P56144; -. DR IntAct; P56144; 3. DR STRING; 85962.HP0361; -. DR PaxDb; P56144; -. DR PRIDE; P56144; -. DR EnsemblBacteria; AAD07429; AAD07429; HP_0361. DR GeneID; 900091; -. DR KEGG; heo:C694_01830; -. DR KEGG; hpy:HP0361; -. DR PATRIC; 20591957; VBIHelPyl33062_0373. DR eggNOG; ENOG4105DI7; Bacteria. DR eggNOG; COG0101; LUCA. DR KO; K06173; -. DR OMA; IRTPIMA; -. DR OrthoDB; EOG6Z9B4R; -. DR BioCyc; HPY:HP0361-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0031119; P:tRNA pseudouridine synthesis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.580; -; 1. DR Gene3D; 3.30.70.660; -; 1. DR HAMAP; MF_00171; TruA; 1. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR001406; PsdUridine_synth_TruA. DR InterPro; IPR020097; PsdUridine_synth_TruA_a/b_dom. DR InterPro; IPR020095; PsdUridine_synth_TruA_C. DR InterPro; IPR020094; PsdUridine_synth_TruA_N. DR PANTHER; PTHR11142; PTHR11142; 1. DR Pfam; PF01416; PseudoU_synth_1; 1. DR PIRSF; PIRSF001430; tRNA_psdUrid_synth; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR TIGRFAMs; TIGR00071; hisT_truA; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; tRNA processing. FT CHAIN 1 242 tRNA pseudouridine synthase A. FT /FTId=PRO_0000057390. FT ACT_SITE 51 51 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_00171}. FT BINDING 107 107 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00171}. SQ SEQUENCE 242 AA; 27312 MW; 76C4093AC440B78D CRC64; MRCFKATIAY DGAYFLGYAK QPNKLGVQDK IEDALNALGI KSVVIAAGRT DKGVHANNQV LSFHAPKHWN AAKLFYYLAP KLAPHIVLKK LEEKNFHARF DAQKRAYRYL LTKNLKTPFL APYIACGDYG SLDALNTALK QFTGKHDFSM FKKEGGATTN PKRTIFNAFA YKTFIIGHEC VVFKIIGDAF LRSSVRLIIQ ACVQYSLEKI TLAEIQAQIH NLKATIRTPI MANGLYLHRV YY // ID TPX_HELPY Reviewed; 166 AA. AC O25151; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Probable thiol peroxidase; DE EC=1.11.1.-; GN Name=tpx; OrderedLocusNames=HP_0390; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Has antioxidant activity. Could remove peroxides or CC H(2)O(2) (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Belongs to the AhpC/TSA family. Tpx subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 thioredoxin domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07455.1; -; Genomic_DNA. DR PIR; F64568; F64568. DR RefSeq; NP_207188.1; NC_000915.1. DR RefSeq; WP_001174648.1; NC_018939.1. DR ProteinModelPortal; O25151; -. DR STRING; 85962.HP0390; -. DR PaxDb; O25151; -. DR PRIDE; O25151; -. DR EnsemblBacteria; AAD07455; AAD07455; HP_0390. DR GeneID; 899225; -. DR KEGG; heo:C694_01980; -. DR KEGG; hpy:HP0390; -. DR PATRIC; 20592019; VBIHelPyl33062_0403. DR eggNOG; ENOG4108V1J; Bacteria. DR eggNOG; COG2077; LUCA. DR KO; K11065; -. DR OMA; KFNAQAN; -. DR OrthoDB; EOG6NWBV8; -. DR BioCyc; HPY:HP0390-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0008379; F:thioredoxin peroxidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0045454; P:cell redox homeostasis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.30.10; -; 1. DR HAMAP; MF_00269; Tpx; 1. DR InterPro; IPR002065; Put_TPX. DR InterPro; IPR013740; Redoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR InterPro; IPR018219; Tpx_CS. DR Pfam; PF08534; Redoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. DR PROSITE; PS01265; TPX; 1. PE 3: Inferred from homology; KW Antioxidant; Complete proteome; Oxidoreductase; Peroxidase; KW Reference proteome. FT CHAIN 1 166 Probable thiol peroxidase. FT /FTId=PRO_0000187881. FT DOMAIN 18 166 Thioredoxin. SQ SEQUENCE 166 AA; 18292 MW; 04DA97480539EED9 CRC64; MQKVTFKEET YQLEGKALKV GDKAPDVKLV NGDLQEVNLL KQGVRFQVVS ALPSLTGSVC LLQAKHFNEQ TGKLPSVSFS VISMDLPFSQ GQICGAEGIK DLRILSDFRY KAFGENYGVL LGKGSLQGLL ARSVFVLDDK GVVIYKEIVQ NILEEPNYEA LLKVLK // ID TRPA_HELPY Reviewed; 262 AA. AC P56141; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=Tryptophan synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00131}; DE EC=4.2.1.20 {ECO:0000255|HAMAP-Rule:MF_00131}; GN Name=trpA {ECO:0000255|HAMAP-Rule:MF_00131}; GN OrderedLocusNames=HP_1277; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The alpha subunit is responsible for the aldol cleavage CC of indoleglycerol phosphate to indole and glyceraldehyde 3- CC phosphate. {ECO:0000255|HAMAP-Rule:MF_00131}. CC -!- CATALYTIC ACTIVITY: L-serine + 1-C-(indol-3-yl)glycerol 3- CC phosphate = L-tryptophan + D-glyceraldehyde 3-phosphate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_00131}. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 5/5. {ECO:0000255|HAMAP- CC Rule:MF_00131}. CC -!- SUBUNIT: Tetramer of two alpha and two beta chains. CC {ECO:0000255|HAMAP-Rule:MF_00131}. CC -!- SIMILARITY: Belongs to the TrpA family. {ECO:0000255|HAMAP- CC Rule:MF_00131}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08322.1; -; Genomic_DNA. DR PIR; E64679; E64679. DR RefSeq; NP_208069.1; NC_000915.1. DR RefSeq; WP_001270319.1; NC_018939.1. DR ProteinModelPortal; P56141; -. DR IntAct; P56141; 1. DR STRING; 85962.HP1277; -. DR PaxDb; P56141; -. DR PRIDE; P56141; -. DR EnsemblBacteria; AAD08322; AAD08322; HP_1277. DR GeneID; 899040; -. DR KEGG; heo:C694_06600; -. DR KEGG; hpy:HP1277; -. DR PATRIC; 20593931; VBIHelPyl33062_1336. DR eggNOG; ENOG4105F6H; Bacteria. DR eggNOG; COG0159; LUCA. DR KO; K01695; -. DR OMA; PVFICPP; -. DR OrthoDB; EOG6RVG0K; -. DR BioCyc; HPY:HP1277-MONOMER; -. DR UniPathway; UPA00035; UER00044. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004834; F:tryptophan synthase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00131; Trp_synth_alpha; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR InterPro; IPR018204; Trp_synthase_alpha_AS. DR InterPro; IPR002028; Trp_synthase_suA. DR Pfam; PF00290; Trp_syntA; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR00262; trpA; 1. DR PROSITE; PS00167; TRP_SYNTHASE_ALPHA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Lyase; Reference proteome; Tryptophan biosynthesis. FT CHAIN 1 262 Tryptophan synthase alpha chain. FT /FTId=PRO_0000098789. FT ACT_SITE 48 48 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00131}. FT ACT_SITE 59 59 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00131}. SQ SEQUENCE 262 AA; 28594 MW; 55A1A28EC80C8FCF CRC64; MRYQNMFETL KKHEKMAFIP FVTLGDPNYE LSFEIIKTLI ISGVSALELG LAFSDPVADG ITIQASHLRA LKHASMAKNF QLLKKIRDYN HNIPIGLLAY ANLIFSYGVD GFYAQAKECG IDSVLIADMP LIEKELVIKS AQKHQIKQIF IASPNASSKD LEQVATHSQG YIYALARSGV TGASRILEND SSAIIKTLKA FSPTPALLGF GISKKEHITN AKGMGADGVI CGSALVKIIE ENLNNENAML EKIKGFIGGM IF // ID TSAA_HELPY Reviewed; 198 AA. AC P21762; DT 01-MAY-1991, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 3. DT 11-NOV-2015, entry version 112. DE RecName: Full=Probable peroxiredoxin; DE EC=1.11.1.15; DE AltName: Full=26 kDa antigen; DE AltName: Full=Thioredoxin reductase; GN Name=tsaA; OrderedLocusNames=HP_1563; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 1-46. RX PubMed=1987145; RA O'Toole P.W., Logan S.M., Kostrzynska M., Wadstrom T., Trust T.J.; RT "Isolation and biochemical and molecular analyses of a species- RT specific protein antigen from the gastric pathogen Helicobacter RT pylori."; RL J. Bacteriol. 173:505-513(1991). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 2 R'-SH + ROOH = R'-S-S-R' + H(2)O + ROH. CC -!- SUBUNIT: Decameric ring of 5 homodimers; disulfide-linked. The CC rings have an approximate diameter of 125 A and a central hole of CC 55 A (By similarity). {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. CC -!- SIMILARITY: Belongs to the AhpC/TSA family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 thioredoxin domain. {ECO:0000255|PROSITE- CC ProRule:PRU00691}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M55507; AAA18984.1; -; Unassigned_DNA. DR EMBL; AE000511; AAD08603.1; -; Genomic_DNA. DR PIR; C64715; C64715. DR RefSeq; NP_208354.1; NC_000915.1. DR RefSeq; WP_000961643.1; NC_018939.1. DR ProteinModelPortal; P21762; -. DR SMR; P21762; 1-175. DR DIP; DIP-3646N; -. DR IntAct; P21762; 3. DR MINT; MINT-165908; -. DR STRING; 85962.HP1563; -. DR PaxDb; P21762; -. DR PRIDE; P21762; -. DR DNASU; 899728; -. DR EnsemblBacteria; AAD08603; AAD08603; HP_1563. DR GeneID; 899728; -. DR KEGG; heo:C694_08100; -. DR KEGG; hpy:HP1563; -. DR PATRIC; 20594553; VBIHelPyl33062_1644. DR eggNOG; ENOG4105D3R; Bacteria. DR eggNOG; COG0450; LUCA. DR KO; K03386; -. DR OMA; NWTPGEK; -. DR OrthoDB; EOG67X1XH; -. DR BioCyc; HPY:HP1563-MONOMER; -. DR BRENDA; 1.11.1.15; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004601; F:peroxidase activity; IEA:UniProtKB-KW. DR GO; GO:0051920; F:peroxiredoxin activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR024706; Peroxiredoxin_AhpC-typ. DR InterPro; IPR019479; Peroxiredoxin_C. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF10417; 1-cysPrx_C; 1. DR Pfam; PF00578; AhpC-TSA; 1. DR PIRSF; PIRSF000239; AHPC; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 1: Evidence at protein level; KW Antioxidant; Complete proteome; Cytoplasm; Direct protein sequencing; KW Disulfide bond; Oxidoreductase; Peroxidase; Redox-active center; KW Reference proteome. FT CHAIN 1 198 Probable peroxiredoxin. FT /FTId=PRO_0000135144. FT DOMAIN 2 161 Thioredoxin. {ECO:0000255|PROSITE- FT ProRule:PRU00691}. FT ACT_SITE 49 49 {ECO:0000250}. FT DISULFID 49 49 Interchain (with C-169). {ECO:0000250}. FT DISULFID 169 169 Interchain (with C-49). {ECO:0000250}. FT CONFLICT 36 36 A -> V (in Ref. 1; AAA18984). FT {ECO:0000305}. FT CONFLICT 64 64 Q -> H (in Ref. 1; AAA18984). FT {ECO:0000305}. FT CONFLICT 98 98 T -> S (in Ref. 1; AAA18984). FT {ECO:0000305}. SQ SEQUENCE 198 AA; 22236 MW; 599E2FF491CEA0BC CRC64; MLVTKLAPDF KAPAVLGNNE VDEHFELSKN LGKNGAILFF WPKDFTFVCP TEIIAFDKRV KDFQEKGFNV IGVSIDSEQV HFAWKNTPVE KGGIGQVTFP MVADITKSIS RDYDVLFEEA IALRGAFLID KNMKVRHAVI NDLPLGRNAD EMLRMVDALL HFEEHGEVCP AGWRKGDKGM KATHQGVAEY LKENSIKL // ID TRL_HELPY Reviewed; 86 AA. AC O87326; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 27-APR-2001, sequence version 2. DT 11-MAY-2016, entry version 45. DE RecName: Full=Protein trl; DE AltName: Full=tRNA-associated locus protein; GN Name=trl; OrderedLocusNames=HP_0945.1; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=MI 212; RX PubMed=10411255; RA Dundon W.G., Marshall D.G., Morain C.A., Smyth C.J.; RT "A novel tRNA-associated locus (trl) from Helicobacter pylori is co- RT transcribed with tRNA(Gly) and reveals genetic diversity."; RL Microbiology 145:1289-1298(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF035574; AAC35746.1; -; Genomic_DNA. DR EMBL; AE000511; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR OMA; SCWSFFS; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR025113; TRL-like. DR Pfam; PF13146; TRL; 1. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 86 Protein trl. FT /FTId=PRO_0000065633. FT VARIANT 12 12 T -> A (in strain: MI 212). FT VARIANT 26 26 A -> V (in strain: MI 212). SQ SEQUENCE 86 AA; 8871 MW; 786E7F626E09D20B CRC64; MSGCASSSPT GTLITMVTMP VSGNDAQYSK EGRASCWSVF SLVAAGNCSV EKAAKSGGVT KIKMVSRETN NFLGIVGKYT TIVQGD // ID TRMD_HELPY Reviewed; 229 AA. AC O25766; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 100. DE RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; DE EC=2.1.1.228; DE AltName: Full=M1G-methyltransferase; DE AltName: Full=tRNA [GM37] methyltransferase; GN Name=trmD; OrderedLocusNames=HP_1148; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Specifically methylates guanosine-37 in various tRNAs. CC {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + guanine(37) in tRNA CC = S-adenosyl-L-homocysteine + N(1)-methylguanine(37) in tRNA. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the RNA methyltransferase TrmD family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08192.1; -; Genomic_DNA. DR PIR; D64663; D64663. DR RefSeq; NP_207939.1; NC_000915.1. DR RefSeq; WP_000672977.1; NC_018939.1. DR ProteinModelPortal; O25766; -. DR DIP; DIP-3681N; -. DR IntAct; O25766; 4. DR MINT; MINT-179982; -. DR STRING; 85962.HP1148; -. DR PaxDb; O25766; -. DR PRIDE; O25766; -. DR EnsemblBacteria; AAD08192; AAD08192; HP_1148. DR GeneID; 899686; -. DR KEGG; heo:C694_05930; -. DR KEGG; hpy:HP1148; -. DR PATRIC; 20593647; VBIHelPyl33062_1202. DR eggNOG; ENOG4105D6X; Bacteria. DR eggNOG; COG0336; LUCA. DR KO; K00554; -. DR OMA; YKGVDQR; -. DR OrthoDB; EOG6J48RZ; -. DR BioCyc; HPY:HP1148-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0052906; F:tRNA (guanine(37)-N(1))-methyltransferase activity; IEA:UniProtKB-EC. DR Gene3D; 1.10.1270.20; -; 1. DR Gene3D; 3.40.1280.10; -; 1. DR HAMAP; MF_00605; TrmD; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR002649; tRNA_m1G_MeTrfase_bac. DR InterPro; IPR023148; tRNA_m1G_MeTrfase_C. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR InterPro; IPR016009; tRNA_MeTrfase_TRMD/TRM10. DR Pfam; PF01746; tRNA_m1G_MT; 1. DR PIRSF; PIRSF000386; tRNA_mtase; 1. DR SUPFAM; SSF75217; SSF75217; 1. DR TIGRFAMs; TIGR00088; trmD; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW S-adenosyl-L-methionine; Transferase; tRNA processing. FT CHAIN 1 229 tRNA (guanine-N(1)-)-methyltransferase. FT /FTId=PRO_0000060388. FT REGION 129 134 S-adenosyl-L-methionine binding. FT {ECO:0000250}. FT BINDING 109 109 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000250}. SQ SEQUENCE 229 AA; 25879 MW; 2D7135818A13D822 CRC64; MKFSVLTLFP QLVWPYFEDS ILKRALEKNL FELEVLNLRD FSANKYQKAD HTLIGGGAGQ ILDPEMVENA LHSVKNPKHT IFLSAVGKPF KQTDAMRLAQ KKHVVLVCGR YEGFDERSIE LGADEVFCIG DFILTGGELG ALCLIDSIAR HIQGVLGNAQ SLENESFENH YLEAPNFANA VFKSKEINKI PAPLEYSKGN HAKIKQLKLD LSKLRTKFYR LDLFKQHKS // ID TRXB_HELPY Reviewed; 311 AA. AC P56431; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 20-JAN-2016, entry version 111. DE RecName: Full=Thioredoxin reductase; DE Short=TRXR; DE EC=1.8.1.9; GN Name=trxB; OrderedLocusNames=HP_0825; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Thioredoxin + NADP(+) = thioredoxin disulfide CC + NADPH. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000250|UniProtKB:P0A9P4}; CC Note=Binds 1 FAD per subunit. {ECO:0000250|UniProtKB:P0A9P4}; CC -!- SUBUNIT: Homodimer. {ECO:0000250|UniProtKB:P0A9P4}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- MISCELLANEOUS: The active site is a redox-active disulfide bond. CC -!- SIMILARITY: Belongs to the class-II pyridine nucleotide-disulfide CC oxidoreductase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07875.1; -; Genomic_DNA. DR PIR; A64623; A64623. DR RefSeq; NP_207618.1; NC_000915.1. DR RefSeq; WP_000564420.1; NC_018939.1. DR PDB; 2Q0K; X-ray; 1.70 A; A/B=1-311. DR PDB; 2Q0L; X-ray; 1.45 A; A/B=1-311. DR PDB; 3ISH; X-ray; 2.43 A; A/B/C=1-311. DR PDBsum; 2Q0K; -. DR PDBsum; 2Q0L; -. DR PDBsum; 3ISH; -. DR ProteinModelPortal; P56431; -. DR SMR; P56431; 1-311. DR DIP; DIP-3417N; -. DR IntAct; P56431; 8. DR MINT; MINT-170981; -. DR STRING; 85962.HP0825; -. DR PaxDb; P56431; -. DR PRIDE; P56431; -. DR EnsemblBacteria; AAD07875; AAD07875; HP_0825. DR GeneID; 899063; -. DR KEGG; heo:C694_04225; -. DR KEGG; hpy:HP0825; -. DR PATRIC; 20592939; VBIHelPyl33062_0858. DR eggNOG; ENOG4105C3M; Bacteria. DR eggNOG; COG0492; LUCA. DR KO; K00384; -. DR OMA; KQEDNSM; -. DR OrthoDB; EOG65XN2W; -. DR BioCyc; HPY:HP0825-MONOMER; -. DR EvolutionaryTrace; P56431; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004791; F:thioredoxin-disulfide reductase activity; IEA:UniProtKB-EC. DR GO; GO:0019430; P:removal of superoxide radicals; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 3. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR008255; Pyr_nucl-diS_OxRdtase_2_AS. DR InterPro; IPR000103; Pyridine_nuc-diS_OxRdtase_2. DR InterPro; IPR005982; Thioredox_Rdtase. DR Pfam; PF07992; Pyr_redox_2; 1. DR PRINTS; PR00469; PNDRDTASEII. DR SUPFAM; SSF51905; SSF51905; 1. DR TIGRFAMs; TIGR01292; TRX_reduct; 1. DR PROSITE; PS00573; PYRIDINE_REDOX_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Disulfide bond; FAD; KW Flavoprotein; NADP; Oxidoreductase; Redox-active center; KW Reference proteome. FT CHAIN 1 311 Thioredoxin reductase. FT /FTId=PRO_0000166733. FT NP_BIND 31 39 FAD. {ECO:0000250}. FT NP_BIND 32 39 FAD. {ECO:0000250|UniProtKB:P0A9P4}. FT NP_BIND 281 290 FAD. {ECO:0000250|UniProtKB:P0A9P4}. FT DISULFID 133 136 Redox-active. FT {ECO:0000250|UniProtKB:P0A9P4}. FT STRAND 2 7 {ECO:0000244|PDB:2Q0L}. FT HELIX 11 22 {ECO:0000244|PDB:2Q0L}. FT STRAND 26 31 {ECO:0000244|PDB:2Q0L}. FT STRAND 33 36 {ECO:0000244|PDB:2Q0L}. FT HELIX 39 42 {ECO:0000244|PDB:2Q0L}. FT HELIX 58 70 {ECO:0000244|PDB:2Q0L}. FT STRAND 75 77 {ECO:0000244|PDB:2Q0L}. FT STRAND 81 87 {ECO:0000244|PDB:2Q0L}. FT STRAND 90 95 {ECO:0000244|PDB:2Q0L}. FT STRAND 100 108 {ECO:0000244|PDB:2Q0L}. FT STRAND 112 114 {ECO:0000244|PDB:2Q0L}. FT HELIX 122 125 {ECO:0000244|PDB:2Q0L}. FT TURN 127 129 {ECO:0000244|PDB:2Q0L}. FT STRAND 130 132 {ECO:0000244|PDB:2Q0L}. FT HELIX 134 137 {ECO:0000244|PDB:2Q0L}. FT HELIX 138 141 {ECO:0000244|PDB:2Q0L}. FT STRAND 144 149 {ECO:0000244|PDB:2Q0L}. FT HELIX 153 163 {ECO:0000244|PDB:2Q0L}. FT STRAND 166 172 {ECO:0000244|PDB:2Q0L}. FT STRAND 174 177 {ECO:0000244|PDB:2Q0L}. FT HELIX 182 189 {ECO:0000244|PDB:2Q0L}. FT STRAND 194 197 {ECO:0000244|PDB:2Q0L}. FT STRAND 200 208 {ECO:0000244|PDB:2Q0L}. FT STRAND 211 219 {ECO:0000244|PDB:2Q0L}. FT TURN 220 222 {ECO:0000244|PDB:2Q0L}. FT STRAND 225 229 {ECO:0000244|PDB:2Q0L}. FT STRAND 231 235 {ECO:0000244|PDB:2Q0L}. FT STRAND 239 241 {ECO:0000244|PDB:2Q0L}. FT HELIX 244 246 {ECO:0000244|PDB:2Q0L}. FT STRAND 253 255 {ECO:0000244|PDB:2Q0L}. FT STRAND 276 278 {ECO:0000244|PDB:2Q0L}. FT HELIX 290 309 {ECO:0000244|PDB:2Q0L}. SQ SEQUENCE 311 AA; 33538 MW; 0718EFE4A43A478D CRC64; MIDCAIIGGG PAGLSAGLYA TRGGVKNAVL FEKGMPGGQI TGSSEIENYP GVKEVVSGLD FMQPWQEQCF RFGLKHEMTA VQRVSKKDSH FVILAEDGKT FEAKSVIIAT GGSPKRTGIK GESEYWGKGV STCATCDGFF YKNKEVAVLG GGDTAVEEAI YLANICKKVY LIHRRDGFRC APITLEHAKN NDKIEFLTPY VVEEIKGDAS GVSSLSIKNT ATNEKRELVV PGFFIFVGYD VNNAVLKQED NSMLCKCDEY GSIVVDFSMK TNVQGLFAAG DIRIFAPKQV VCAASDGATA ALSVISYLEH H // ID TRPE_HELPY Reviewed; 500 AA. AC O25869; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 104. DE RecName: Full=Anthranilate synthase component 1; DE Short=AS; DE Short=ASI; DE EC=4.1.3.27; GN Name=trpE; OrderedLocusNames=HP_1282; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of a heterotetrameric complex that catalyzes the CC two-step biosynthesis of anthranilate, an intermediate in the CC biosynthesis of L-tryptophan. In the first step, the glutamine- CC binding beta subunit (TrpG) of anthranilate synthase (AS) provides CC the glutamine amidotransferase activity which generates ammonia as CC a substrate that, along with chorismate, is used in the second CC step, catalyzed by the large alpha subunit of AS (TrpE) to produce CC anthranilate. In the absence of TrpG, TrpE can synthesize CC anthranilate directly from chorismate and high concentrations of CC ammonia (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Chorismate + L-glutamine = anthranilate + CC pyruvate + L-glutamate. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000250|UniProtKB:P00897}; CC Note=Binds 1 Mg(2+) ion per subunit. CC {ECO:0000250|UniProtKB:P00897}; CC -!- ENZYME REGULATION: Feedback inhibited by tryptophan. CC {ECO:0000250}. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 1/5. CC -!- SUBUNIT: Heterotetramer consisting of two non-identical subunits: CC a beta subunit (TrpG) and a large alpha subunit (TrpE). CC {ECO:0000250}. CC -!- SIMILARITY: Belongs to the anthranilate synthase component I CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08326.1; -; Genomic_DNA. DR PIR; B64680; B64680. DR RefSeq; NP_208074.1; NC_000915.1. DR RefSeq; WP_000624398.1; NC_018939.1. DR ProteinModelPortal; O25869; -. DR DIP; DIP-3432N; -. DR IntAct; O25869; 3. DR MINT; MINT-185628; -. DR STRING; 85962.HP1282; -. DR PaxDb; O25869; -. DR PRIDE; O25869; -. DR EnsemblBacteria; AAD08326; AAD08326; HP_1282. DR GeneID; 899068; -. DR KEGG; heo:C694_06625; -. DR KEGG; hpy:HP1282; -. DR PATRIC; 20593941; VBIHelPyl33062_1341. DR eggNOG; ENOG4105CRQ; Bacteria. DR eggNOG; COG0147; LUCA. DR KO; K01657; -. DR OMA; AYRSFMN; -. DR OrthoDB; EOG6D5G6B; -. DR BioCyc; HPY:HP1282-MONOMER; -. DR UniPathway; UPA00035; UER00040. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004049; F:anthranilate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.60.120.10; -; 1. DR InterPro; IPR005801; ADC_synthase. DR InterPro; IPR019999; Anth_synth_I-like. DR InterPro; IPR006805; Anth_synth_I_N. DR InterPro; IPR005257; Anth_synth_I_TrpE. DR InterPro; IPR015890; Chorismate_C. DR Pfam; PF04715; Anth_synt_I_N; 1. DR Pfam; PF00425; Chorismate_bind; 1. DR PIRSF; PIRSF001373; TrpE; 1. DR PRINTS; PR00095; ANTSNTHASEI. DR SUPFAM; SSF56322; SSF56322; 1. DR TIGRFAMs; TIGR00565; trpE_proteo; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Lyase; Magnesium; Metal-binding; KW Reference proteome; Tryptophan biosynthesis. FT CHAIN 1 500 Anthranilate synthase component 1. FT /FTId=PRO_0000154094. FT REGION 278 280 Tryptophan binding. FT {ECO:0000250|UniProtKB:P00897}. FT REGION 315 316 Chorismate binding. FT {ECO:0000250|UniProtKB:P00897}. FT REGION 468 470 Chorismate binding. FT {ECO:0000250|UniProtKB:P00897}. FT METAL 348 348 Magnesium. FT {ECO:0000250|UniProtKB:P00897}. FT METAL 483 483 Magnesium. FT {ECO:0000250|UniProtKB:P00897}. FT BINDING 31 31 Tryptophan. FT {ECO:0000250|UniProtKB:P00897}. FT BINDING 434 434 Chorismate. FT {ECO:0000250|UniProtKB:P00897}. FT BINDING 454 454 Chorismate. FT {ECO:0000250|UniProtKB:P00897}. FT BINDING 470 470 Chorismate; via amide nitrogen. FT {ECO:0000250|UniProtKB:P00897}. SQ SEQUENCE 500 AA; 56556 MW; B28485C36E1E635E CRC64; MISLIEKAPY IPYPLALYEK LEQPHTLLFE SAEIESKAHT KSLLMAKACL KLICNHNIVT ITSLTPNGGA FLQKLSAFFK TPIQDNALIL TYTKNKKTQD EFLKLFEPSP FDALRGLFKS VKTKPKHPFT LLSAGVFSFE MLNFFEDLPH LKAKDNTVHD FIFYLAQNLI IIDHKEKSVE ILGACFDERF KTEIAQELQD LKELAKSIKS DFVPKKSKQS REVSANCSDS EFEKRVLSLQ EEIKKGEIFQ AVLSRSFYME CLEGLSAYYH LKLTNPSPYM FYIKDSDFIL FGASPESALK YNALTNTAEI YPIAGTRLRG KDKQGNIDYD LDSKMEFDLQ HDYKERAEHI MLVDLARNDM ARVSKKRYCD KLLKVDKYSN VMHLVSRVVG ELKKGCDSLH AYRSFMNAGT LSGAPKISAI RLIYQLENQR RGSYGGSVGY LNSEGSMDSC ITIRSCFVKN NRAVIQAGAG IVLDSVPQNE ANETRAKAQA LIDAIRKTSL // ID TYPA_HELPY Reviewed; 599 AA. AC O25225; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 97. DE RecName: Full=GTP-binding protein TypA/BipA homolog; GN Name=typA; OrderedLocusNames=HP_0480; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Not known; probably interacts with the ribosomes in a CC GTP dependent manner. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. TypA CC subfamily. {ECO:0000255|PROSITE-ProRule:PRU01059}. CC -!- SIMILARITY: Contains 1 tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000255|PROSITE-ProRule:PRU01059}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07546.1; -; Genomic_DNA. DR PIR; H64579; H64579. DR RefSeq; NP_207278.1; NC_000915.1. DR RefSeq; WP_000790221.1; NC_018939.1. DR ProteinModelPortal; O25225; -. DR IntAct; O25225; 5. DR MINT; MINT-4074340; -. DR STRING; 85962.HP0480; -. DR PaxDb; O25225; -. DR PRIDE; O25225; -. DR DNASU; 898837; -. DR EnsemblBacteria; AAD07546; AAD07546; HP_0480. DR GeneID; 898837; -. DR KEGG; heo:C694_02460; -. DR KEGG; hpy:HP0480; -. DR PATRIC; 20592231; VBIHelPyl33062_0504. DR eggNOG; ENOG4105CI3; Bacteria. DR eggNOG; COG1217; LUCA. DR KO; K06207; -. DR OMA; SMLFTIN; -. DR OrthoDB; EOG67HJSM; -. DR BioCyc; HPY:HP0480-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR Gene3D; 3.30.70.240; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR009022; EFG_III-V. DR InterPro; IPR000640; EFG_V. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR InterPro; IPR006298; TypA_GTP-bd. DR PANTHER; PTHR23115:SF14; PTHR23115:SF14; 1. DR Pfam; PF00679; EFG_C; 1. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54980; SSF54980; 2. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR TIGRFAMs; TIGR01394; TypA_BipA; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome; GTP-binding; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 599 GTP-binding protein TypA/BipA homolog. FT /FTId=PRO_0000091555. FT DOMAIN 2 197 tr-type G. {ECO:0000255|PROSITE- FT ProRule:PRU01059}. FT NP_BIND 11 18 GTP. {ECO:0000250}. FT NP_BIND 73 77 GTP. {ECO:0000250}. FT NP_BIND 127 130 GTP. {ECO:0000250}. SQ SEQUENCE 599 AA; 66676 MW; 93E785506BCAEEA9 CRC64; MKNIRNIAVI AHVDHGKTTL VDGLLSQSGT FSEREKVDER VMDSNDLERE RGITILSKNT AIYYKDTKIN IIDTPGHADF GGEVERVLKM VDGVLLLVDA QEGVMPQTKF VVKKALSFGI CPIVVVNKID KPAAEPDRVV DEVFDLFVAM GASDKQLDFP VVYAAARDGY AMKSLDDEKK NLEPLFETIL EHVPSPSGSV DEPLQMQIFT LDYDNYVGKI GIARVFNGSV KKNESVLLMK SDGSKENGRI TKLIGFLGLA RTEIENAYAG DIVAIAGFNA MDVGDSVVDP ANPMPLDPMH LEEPTMSVYF AVNDSPLAGL EGKHVTANKL KDRLLKEMQT NIAMKCEEMG EGKFKVSGRG ELQITILAEN LRREGFEFSI SRPEVIIKEE NGVKCEPFEH LVIDTPQDFS GAIIERLGKR KAEMKAMNPM SDGYTRLEFE IPARGLIGYR SEFLTDTKGE GVMNHSFLEF RPFSGSVESR KNGALISMEN GEATAFSLFN IQERGTLFIN PQTKVYVGMV IGEHSRDNDL DVNPIKSKHL TNMRASGSDD AIKLTPPRTM VLERALEWIE EDEILEVTPL NLRIRKKILD PNMRKRAKK // ID UBIX_HELPY Reviewed; 187 AA. AC O26011; DT 21-FEB-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 85. DE RecName: Full=Flavin prenyltransferase UbiX {ECO:0000255|HAMAP-Rule:MF_01984}; DE EC=2.5.1.129 {ECO:0000255|HAMAP-Rule:MF_01984}; GN Name=ubiX {ECO:0000255|HAMAP-Rule:MF_01984}; GN OrderedLocusNames=HP_1476; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Flavin prenyltransferase that catalyzes the synthesis of CC the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- CC polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase CC is metal-independent and links a dimethylallyl moiety from CC dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms CC of FMN. {ECO:0000255|HAMAP-Rule:MF_01984}. CC -!- CATALYTIC ACTIVITY: Dimethylallyl phosphate + FMNH(2) = prenylated CC FMNH(2) + phosphate. {ECO:0000255|HAMAP-Rule:MF_01984}. CC -!- SIMILARITY: Belongs to the UbiX/PAD1 family. {ECO:0000255|HAMAP- CC Rule:MF_01984}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08515.1; -; Genomic_DNA. DR PIR; D64704; D64704. DR RefSeq; NP_208267.1; NC_000915.1. DR RefSeq; WP_000780126.1; NC_018939.1. DR ProteinModelPortal; O26011; -. DR STRING; 85962.HP1476; -. DR PaxDb; O26011; -. DR PRIDE; O26011; -. DR EnsemblBacteria; AAD08515; AAD08515; HP_1476. DR GeneID; 899816; -. DR KEGG; heo:C694_07640; -. DR KEGG; hpy:HP1476; -. DR PATRIC; 20594363; VBIHelPyl33062_1550. DR eggNOG; ENOG4108UMA; Bacteria. DR eggNOG; COG0163; LUCA. DR KO; K03186; -. DR OMA; KEDWMAP; -. DR OrthoDB; EOG6C8MXR; -. DR BioCyc; HPY:HP1476-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004659; F:prenyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1950; -; 1. DR HAMAP; MF_01984; ubiX_pad; 1. DR InterPro; IPR003382; Flavoprotein. DR InterPro; IPR004507; UbiX_Pad1. DR Pfam; PF02441; Flavoprotein; 1. DR SUPFAM; SSF52507; SSF52507; 1. DR TIGRFAMs; TIGR00421; ubiX_pad; 1. PE 3: Inferred from homology; KW Complete proteome; Flavoprotein; FMN; Prenyltransferase; KW Reference proteome; Transferase. FT CHAIN 1 187 Flavin prenyltransferase UbiX. FT /FTId=PRO_0000134966. FT NP_BIND 9 11 FMN. {ECO:0000255|HAMAP-Rule:MF_01984}. FT BINDING 34 34 FMN. {ECO:0000255|HAMAP-Rule:MF_01984}. FT BINDING 123 123 FMN. {ECO:0000255|HAMAP-Rule:MF_01984}. FT BINDING 153 153 DMAP. {ECO:0000255|HAMAP-Rule:MF_01984}. FT BINDING 169 169 DMAP. {ECO:0000255|HAMAP-Rule:MF_01984}. SQ SEQUENCE 187 AA; 20586 MW; 92E1361FDA49AFB0 CRC64; MKLVLGISGA SGIPLALRFL EKLPKEIEVF VVASKNAHVV ALEESNINLK NAMKDLRPSG TFFNEQDIHA SIASGSYGIH KMAIIPASMD MVAKIAHGFG GDLISRSASV MLKEKRPLLI APREMPLSAI MLENLLKLSH SNAIIAPPMM TYYTQSKTLE AMQDFLVGKW FDSLGIENDL YPRWGMN // ID URE1_HELPY Reviewed; 569 AA. AC P69996; P14917; Q9R3B3; DT 04-JAN-2005, integrated into UniProtKB/Swiss-Prot. DT 04-JAN-2005, sequence version 1. DT 11-NOV-2015, entry version 92. DE RecName: Full=Urease subunit beta {ECO:0000255|HAMAP-Rule:MF_01953}; DE EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01953}; DE AltName: Full=Urea amidohydrolase subunit beta {ECO:0000255|HAMAP-Rule:MF_01953}; GN Name=ureB {ECO:0000255|HAMAP-Rule:MF_01953}; Synonyms=hpuB; GN OrderedLocusNames=HP_0072; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=2001995; RA Labigne A., Cussac V., Courcoux P.; RT "Shuttle cloning and nucleotide sequences of Helicobacter pylori genes RT responsible for urease activity."; RL J. Bacteriol. 173:1920-1931(1991). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=CPM630; RX PubMed=2326167; DOI=10.1093/nar/18.2.362; RA Clayton C.L., Pallen M.J., Kleanthous H., Wren B.W., Tabaqchali S.; RT "Nucleotide sequence of two genes from Helicobacter pylori encoding RT for urease subunits."; RL Nucleic Acids Res. 18:362-362(1990). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [4] RP PROTEIN SEQUENCE OF 1-30, CATALYTIC ACTIVITY, AND KINETIC PARAMETERS. RX PubMed=1857197; DOI=10.1016/0882-4010(91)90062-F; RA Evans D.J. Jr., Evans D.G., Kirkpatrick S.S., Graham D.Y.; RT "Characterization of the Helicobacter pylori urease and purification RT of its subunits."; RL Microb. Pathog. 10:15-26(1991). RN [5] RP PROTEIN SEQUENCE OF 1-20, CATALYTIC ACTIVITY, KINETIC PARAMETERS, AND RP INTERACTION WITH UREA. RX PubMed=2188975; RA Dunn B.E., Campbell G.P., Perez-Perez G.I., Blaser M.J.; RT "Purification and characterization of urease from Helicobacter RT pylori."; RL J. Biol. Chem. 265:9464-9469(1990). RN [6] RP PROTEIN SEQUENCE OF 1-15. RX PubMed=2318539; RA Hu L.-T., Mobley H.L.T.; RT "Purification and N-terminal analysis of urease from Helicobacter RT pylori."; RL Infect. Immun. 58:992-998(1990). RN [7] RP PROTEIN SEQUENCE OF 1-12. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=1452359; RA Turbett G.R., Hoej P.B., Horne R., Mee B.J.; RT "Purification and characterization of the urease enzymes of RT Helicobacter species from humans and animals."; RL Infect. Immun. 60:5259-5266(1992). RN [8] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 565-569, AND DISRUPTION RP PHENOTYPE. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [9] RP CATALYTIC ACTIVITY. RX PubMed=1612735; RA Hu L.-T., Foxall P.A., Russell R., Mobley H.L.T.; RT "Purification of recombinant Helicobacter pylori urease apoenzyme RT encoded by ureA and ureB."; RL Infect. Immun. 60:2657-2666(1992). RN [10] RP FUNCTION, AND ROLE IN VIRULENCE. RX PubMed=8039935; RA Tsuda M., Karita M., Morshed M.G., Okita K., Nakazawa T.; RT "A urease-negative mutant of Helicobacter pylori constructed by RT allelic exchange mutagenesis lacks the ability to colonize the nude RT mouse stomach."; RL Infect. Immun. 62:3586-3589(1994). RN [11] RP SUBCELLULAR LOCATION. RX PubMed=8641799; RA Phadnis S.H., Parlow M.H., Levy M., Ilver D., Caulkins C.M., RA Connors J.B., Dunn B.E.; RT "Surface localization of Helicobacter pylori urease and a heat shock RT protein homolog requires bacterial autolysis."; RL Infect. Immun. 64:905-912(1996). RN [12] RP INDUCTION. RX PubMed=11447165; DOI=10.1128/IAI.69.8.4891-4897.2001; RA van Vliet A.H.M., Kuipers E.J., Waidner B., Davies B.J., de Vries N., RA Penn C.W., Vandenbroucke-Grauls C.M.J.E., Kist M., Bereswill S., RA Kusters J.G.; RT "Nickel-responsive induction of urease expression in Helicobacter RT pylori is mediated at the transcriptional level."; RL Infect. Immun. 69:4891-4897(2001). RN [13] RP INDUCTION. RX PubMed=16339943; DOI=10.1099/mic.0.28188-0; RA Belzer C., Stoof J., Beckwith C.S., Kuipers E.J., Kusters J.G., RA van Vliet A.H.M.; RT "Differential regulation of urease activity in Helicobacter hepaticus RT and Helicobacter pylori."; RL Microbiology 151:3989-3995(2005). RN [14] RP X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) IN COMPLEX WITH NICKEL IONS, RP SUBUNIT STRUCTURE, AND CARBAMYLATION AT LYS-219. RX PubMed=11373617; DOI=10.1038/88563; RA Ha N.-C., Oh S.-T., Sung J.Y., Cha K.A., Lee M.H., Oh B.-H.; RT "Supramolecular assembly and acid resistance of Helicobacter pylori RT urease."; RL Nat. Struct. Biol. 8:505-509(2001). CC -!- FUNCTION: Ammonia produced by ureolysis increases the gastric pH CC thereby providing an environment permissive for colonization of CC the stomach. {ECO:0000269|PubMed:8039935}. CC -!- CATALYTIC ACTIVITY: Urea + H(2)O = CO(2) + 2 NH(3). CC {ECO:0000255|HAMAP-Rule:MF_01953, ECO:0000269|PubMed:1612735, CC ECO:0000269|PubMed:1857197, ECO:0000269|PubMed:2188975}. CC -!- COFACTOR: CC Name=Ni cation; Xref=ChEBI:CHEBI:25516; CC Note=Binds 2 nickel ions per subunit.; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.48 mM for urea {ECO:0000269|PubMed:1857197, CC ECO:0000269|PubMed:2188975}; CC Vmax=1.1 mmol/min/mg enzyme {ECO:0000269|PubMed:1857197, CC ECO:0000269|PubMed:2188975}; CC pH dependence: CC Optimum pH is 8.0. Active from pH 4.0 to 10.0. In unbuffered CC solutions, the dodecameric complex is active at pH3.0.; CC -!- PATHWAY: Nitrogen metabolism; urea degradation; CO(2) and NH(3) CC from urea (urease route): step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_01953}. CC -!- SUBUNIT: Heterohexamer of 3 UreA (alpha) and 3 UreB (beta) CC subunits. Four heterohexamers assemble to form a 16 nm dodecameric CC complex. {ECO:0000255|HAMAP-Rule:MF_01953, CC ECO:0000269|PubMed:11373617}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01953, CC ECO:0000269|PubMed:8641799}. Note=Also associates with the outer CC membrane upon autolysis of neighboring bacteria. CC -!- INDUCTION: By nickel ions. {ECO:0000269|PubMed:11447165, CC ECO:0000269|PubMed:16339943}. CC -!- PTM: Carbamylation allows a single lysine to coordinate two nickel CC ions. {ECO:0000255|HAMAP-Rule:MF_01953, CC ECO:0000269|PubMed:11373617}. CC -!- DISRUPTION PHENOTYPE: Cells do not express urease. CC {ECO:0000269|PubMed:1313413}. CC -!- MISCELLANEOUS: The novel dodecameric structure of the enzyme may CC allow it to remain active at the cell surface at acidic gastric CC pH. Within this dodecameric structure the 12 active sites are CC clustered within the interior of the proteinaceous shell. This may CC allow a high local concentration of ammonia within the enzyme CC which may protect the nickel-chelating groups from protonation. CC -!- SIMILARITY: Belongs to the urease family. {ECO:0000255|HAMAP- CC Rule:MF_01953}. CC -!- SIMILARITY: Contains 1 urease domain. {ECO:0000255|HAMAP- CC Rule:MF_01953}. CC -!- CAUTION: The orthologous protein is known as the alpha subunit CC (UreC) in most other bacteria. {ECO:0000305}. CC -!- WEB RESOURCE: Name=Protein Spotlight; Note=Going unnoticed - Issue CC 95 of June 2008; CC URL="http://web.expasy.org/spotlight/back_issues/095"; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M60398; AAA25021.1; -; Genomic_DNA. DR EMBL; X17079; CAA34933.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07143.1; -; Genomic_DNA. DR EMBL; M84338; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; B38537; URKCBP. DR RefSeq; NP_206872.1; NC_000915.1. DR RefSeq; WP_000724295.1; NC_018939.1. DR PDB; 1E9Y; X-ray; 3.00 A; B=1-569. DR PDB; 1E9Z; X-ray; 3.00 A; B=1-569. DR PDBsum; 1E9Y; -. DR PDBsum; 1E9Z; -. DR ProteinModelPortal; P69996; -. DR SMR; P69996; 1-569. DR IntAct; P69996; 12. DR MINT; MINT-1567059; -. DR STRING; 85962.HP0072; -. DR MEROPS; M38.982; -. DR PaxDb; P69996; -. DR PRIDE; P69996; -. DR EnsemblBacteria; AAD07143; AAD07143; HP_0072. DR GeneID; 899104; -. DR KEGG; heo:C694_00350; -. DR KEGG; hpy:HP0072; -. DR PATRIC; 20591347; VBIHelPyl33062_0075. DR eggNOG; ENOG4105CQM; Bacteria. DR eggNOG; COG0804; LUCA. DR KO; K01428; -. DR OMA; FDSHIHF; -. DR OrthoDB; EOG6ND0GM; -. DR BioCyc; HPY:HP0072-MONOMER; -. DR UniPathway; UPA00258; UER00370. DR EvolutionaryTrace; P69996; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009039; F:urease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR GO; GO:0043419; P:urea catabolic process; IEA:UniProtKB-UniPathway. DR Gene3D; 2.30.40.10; -; 1. DR HAMAP; MF_01953; Urease_alpha; 1. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR InterPro; IPR011612; Urease_alpha_N_dom. DR InterPro; IPR017950; Urease_AS. DR InterPro; IPR005848; Urease_asu. DR InterPro; IPR017951; Urease_asu_c. DR InterPro; IPR029754; Urease_Ni-bd. DR Pfam; PF01979; Amidohydro_1; 1. DR Pfam; PF00449; Urease_alpha; 1. DR PRINTS; PR01752; UREASE. DR SUPFAM; SSF51338; SSF51338; 2. DR SUPFAM; SSF51556; SSF51556; 2. DR TIGRFAMs; TIGR01792; urease_alph; 1. DR PROSITE; PS01120; UREASE_1; 1. DR PROSITE; PS00145; UREASE_2; 1. DR PROSITE; PS51368; UREASE_3; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; KW Hydrolase; Metal-binding; Nickel; Reference proteome; Virulence. FT CHAIN 1 569 Urease subunit beta. FT /FTId=PRO_0000067533. FT DOMAIN 131 569 Urease. {ECO:0000255|HAMAP- FT Rule:MF_01953}. FT ACT_SITE 322 322 Proton donor. {ECO:0000305}. FT METAL 136 136 Nickel 1; via tele nitrogen. FT METAL 138 138 Nickel 1; via tele nitrogen. FT METAL 219 219 Nickel 1; via carbamate group. FT METAL 219 219 Nickel 2; via carbamate group. FT METAL 248 248 Nickel 2; via pros nitrogen. FT METAL 274 274 Nickel 2; via tele nitrogen. FT METAL 362 362 Nickel 1. FT BINDING 221 221 Substrate. {ECO:0000305}. FT MOD_RES 219 219 N6-carboxylysine. {ECO:0000255|HAMAP- FT Rule:MF_01953, FT ECO:0000269|PubMed:11373617}. FT CONFLICT 10 10 V -> A (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 19 19 D -> A (in Ref. 2). {ECO:0000305}. FT CONFLICT 22 22 R -> C (in Ref. 4; AA sequence). FT {ECO:0000305}. FT CONFLICT 27 27 D -> C (in Ref. 4; AA sequence). FT {ECO:0000305}. FT CONFLICT 104 104 M -> T (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 181 181 W -> F (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 193 193 L -> F (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 218 218 F -> L (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 273 273 F -> Y (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 540 540 P -> S (in Ref. 2; CAA34933). FT {ECO:0000305}. FT CONFLICT 554 569 SKPANKVSLAQLFSIF -> LNQPIK (in Ref. 2; FT CAA34933). {ECO:0000305}. FT STRAND 3 5 {ECO:0000244|PDB:1E9Y}. FT HELIX 6 10 {ECO:0000244|PDB:1E9Y}. FT STRAND 20 22 {ECO:0000244|PDB:1E9Y}. FT STRAND 29 31 {ECO:0000244|PDB:1E9Y}. FT STRAND 49 53 {ECO:0000244|PDB:1E9Z}. FT TURN 54 56 {ECO:0000244|PDB:1E9Y}. FT STRAND 67 77 {ECO:0000244|PDB:1E9Y}. FT STRAND 80 89 {ECO:0000244|PDB:1E9Y}. FT STRAND 92 97 {ECO:0000244|PDB:1E9Y}. FT TURN 102 104 {ECO:0000244|PDB:1E9Y}. FT STRAND 105 107 {ECO:0000244|PDB:1E9Y}. FT HELIX 110 112 {ECO:0000244|PDB:1E9Y}. FT STRAND 119 122 {ECO:0000244|PDB:1E9Y}. FT STRAND 127 130 {ECO:0000244|PDB:1E9Y}. FT STRAND 132 138 {ECO:0000244|PDB:1E9Y}. FT HELIX 144 150 {ECO:0000244|PDB:1E9Y}. FT STRAND 153 159 {ECO:0000244|PDB:1E9Y}. FT HELIX 165 169 {ECO:0000244|PDB:1E9Y}. FT HELIX 175 186 {ECO:0000244|PDB:1E9Y}. FT STRAND 189 198 {ECO:0000244|PDB:1E9Y}. FT HELIX 204 212 {ECO:0000244|PDB:1E9Y}. FT STRAND 216 220 {ECO:0000244|PDB:1E9Y}. FT HELIX 222 224 {ECO:0000244|PDB:1E9Y}. FT HELIX 228 240 {ECO:0000244|PDB:1E9Y}. FT STRAND 244 247 {ECO:0000244|PDB:1E9Y}. FT HELIX 258 265 {ECO:0000244|PDB:1E9Y}. FT STRAND 270 272 {ECO:0000244|PDB:1E9Y}. FT TURN 273 276 {ECO:0000244|PDB:1E9Y}. FT TURN 283 285 {ECO:0000244|PDB:1E9Y}. FT HELIX 286 291 {ECO:0000244|PDB:1E9Y}. FT STRAND 295 299 {ECO:0000244|PDB:1E9Y}. FT HELIX 301 303 {ECO:0000244|PDB:1E9Y}. FT HELIX 310 320 {ECO:0000244|PDB:1E9Y}. FT TURN 321 323 {ECO:0000244|PDB:1E9Y}. FT HELIX 329 338 {ECO:0000244|PDB:1E9Y}. FT HELIX 341 352 {ECO:0000244|PDB:1E9Y}. FT STRAND 365 367 {ECO:0000244|PDB:1E9Z}. FT HELIX 372 387 {ECO:0000244|PDB:1E9Y}. FT STRAND 395 397 {ECO:0000244|PDB:1E9Y}. FT HELIX 399 406 {ECO:0000244|PDB:1E9Y}. FT HELIX 407 409 {ECO:0000244|PDB:1E9Y}. FT HELIX 411 416 {ECO:0000244|PDB:1E9Y}. FT TURN 420 422 {ECO:0000244|PDB:1E9Y}. FT STRAND 423 426 {ECO:0000244|PDB:1E9Y}. FT STRAND 434 437 {ECO:0000244|PDB:1E9Y}. FT TURN 439 444 {ECO:0000244|PDB:1E9Y}. FT STRAND 447 451 {ECO:0000244|PDB:1E9Y}. FT STRAND 454 460 {ECO:0000244|PDB:1E9Y}. FT STRAND 465 468 {ECO:0000244|PDB:1E9Y}. FT STRAND 470 472 {ECO:0000244|PDB:1E9Z}. FT STRAND 474 477 {ECO:0000244|PDB:1E9Y}. FT HELIX 479 481 {ECO:0000244|PDB:1E9Y}. FT HELIX 485 489 {ECO:0000244|PDB:1E9Y}. FT STRAND 491 494 {ECO:0000244|PDB:1E9Y}. FT HELIX 496 500 {ECO:0000244|PDB:1E9Y}. FT HELIX 503 506 {ECO:0000244|PDB:1E9Y}. FT STRAND 511 515 {ECO:0000244|PDB:1E9Y}. FT HELIX 524 526 {ECO:0000244|PDB:1E9Y}. FT STRAND 527 529 {ECO:0000244|PDB:1E9Z}. FT STRAND 536 538 {ECO:0000244|PDB:1E9Y}. FT TURN 540 542 {ECO:0000244|PDB:1E9Y}. FT STRAND 545 547 {ECO:0000244|PDB:1E9Y}. FT STRAND 561 563 {ECO:0000244|PDB:1E9Y}. FT TURN 564 566 {ECO:0000244|PDB:1E9Y}. SQ SEQUENCE 569 AA; 61684 MW; 4C8A6BC6C8295584 CRC64; MKKISRKEYV SMYGPTTGDK VRLGDTDLIA EVEHDYTIYG EELKFGGGKT LREGMSQSNN PSKEELDLII TNALIVDYTG IYKADIGIKD GKIAGIGKGG NKDMQDGVKN NLSVGPATEA LAGEGLIVTA GGIDTHIHFI SPQQIPTAFA SGVTTMIGGG TGPADGTNAT TITPGRRNLK WMLRAAEEYS MNLGFLAKGN ASNDASLADQ IEAGAIGFKI HEDWGTTPSA INHALDVADK YDVQVAIHTD TLNEAGCVED TMAAIAGRTM HTFHTEGAGG GHAPDIIKVA GEHNILPAST NPTIPFTVNT EAEHMDMLMV CHHLDKSIKE DVQFADSRIR PQTIAAEDTL HDMGIFSITS SDSQAMGRVG EVITRTWQTA DKNKKEFGRL KEEKGDNDNF RIKRYLSKYT INPAIAHGIS EYVGSVEVGK VADLVLWSPA FFGVKPNMII KGGFIALSQM GDANASIPTP QPVYYREMFA HHGKAKYDAN ITFVSQAAYD KGIKEELGLE RQVLPVKNCR NITKKDMQFN DTTAHIEVNP ETYHVFVDGK EVTSKPANKV SLAQLFSIF // ID URE23_HELPY Reviewed; 238 AA. AC P14916; DT 01-APR-1990, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1992, sequence version 2. DT 11-NOV-2015, entry version 134. DE RecName: Full=Urease subunit alpha {ECO:0000255|HAMAP-Rule:MF_01955}; DE EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01955}; DE AltName: Full=Urea amidohydrolase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01955}; GN Name=ureA {ECO:0000255|HAMAP-Rule:MF_01955}; Synonyms=hpuA; GN OrderedLocusNames=HP_0073; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=CPM630; RX PubMed=2326167; DOI=10.1093/nar/18.2.362; RA Clayton C.L., Pallen M.J., Kleanthous H., Wren B.W., Tabaqchali S.; RT "Nucleotide sequence of two genes from Helicobacter pylori encoding RT for urease subunits."; RL Nucleic Acids Res. 18:362-362(1990). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=2001995; RA Labigne A., Cussac V., Courcoux P.; RT "Shuttle cloning and nucleotide sequences of Helicobacter pylori genes RT responsible for urease activity."; RL J. Bacteriol. 173:1920-1931(1991). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=HPK5; RX PubMed=10844692; DOI=10.1046/j.1365-2958.2000.01918.x; RA Akada J.K., Shirai M., Takeuchi H., Tsuda M., Nakazawa T.; RT "Identification of the urease operon in Helicobacter pylori and its RT control by mRNA decay in response to pH."; RL Mol. Microbiol. 36:1071-1084(2000). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [5] RP PROTEIN SEQUENCE OF 1-20. RX PubMed=2318539; RA Hu L.-T., Mobley H.L.T.; RT "Purification and N-terminal analysis of urease from Helicobacter RT pylori."; RL Infect. Immun. 58:992-998(1990). RN [6] RP PROTEIN SEQUENCE OF 1-20, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL RP PROPERTIES, AND INTERACTION WITH UREB. RX PubMed=2188975; RA Dunn B.E., Campbell G.P., Perez-Perez G.I., Blaser M.J.; RT "Purification and characterization of urease from Helicobacter RT pylori."; RL J. Biol. Chem. 265:9464-9469(1990). RN [7] RP PROTEIN SEQUENCE OF 1-20. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=1452359; RA Turbett G.R., Hoej P.B., Horne R., Mee B.J.; RT "Purification and characterization of the urease enzymes of RT Helicobacter species from humans and animals."; RL Infect. Immun. 60:5259-5266(1992). RN [8] RP DISRUPTION PHENOTYPE. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [9] RP CATALYTIC ACTIVITY. RX PubMed=1612735; RA Hu L.-T., Foxall P.A., Russell R., Mobley H.L.T.; RT "Purification of recombinant Helicobacter pylori urease apoenzyme RT encoded by ureA and ureB."; RL Infect. Immun. 60:2657-2666(1992). RN [10] RP FUNCTION. RX PubMed=8039935; RA Tsuda M., Karita M., Morshed M.G., Okita K., Nakazawa T.; RT "A urease-negative mutant of Helicobacter pylori constructed by RT allelic exchange mutagenesis lacks the ability to colonize the nude RT mouse stomach."; RL Infect. Immun. 62:3586-3589(1994). RN [11] RP SUBCELLULAR LOCATION. RX PubMed=8641799; RA Phadnis S.H., Parlow M.H., Levy M., Ilver D., Caulkins C.M., RA Connors J.B., Dunn B.E.; RT "Surface localization of Helicobacter pylori urease and a heat shock RT protein homolog requires bacterial autolysis."; RL Infect. Immun. 64:905-912(1996). RN [12] RP INDUCTION. RX PubMed=11447165; DOI=10.1128/IAI.69.8.4891-4897.2001; RA van Vliet A.H.M., Kuipers E.J., Waidner B., Davies B.J., de Vries N., RA Penn C.W., Vandenbroucke-Grauls C.M.J.E., Kist M., Bereswill S., RA Kusters J.G.; RT "Nickel-responsive induction of urease expression in Helicobacter RT pylori is mediated at the transcriptional level."; RL Infect. Immun. 69:4891-4897(2001). RN [13] RP REVIEW ON VIRULENCE OF H.PYLORI. RX PubMed=17313591; DOI=10.1111/j.1574-6968.2007.00648.x; RA Clyne M., Dolan B., Reeves E.P.; RT "Bacterial factors that mediate colonization of the stomach and RT virulence of Helicobacter pylori."; RL FEMS Microbiol. Lett. 268:135-143(2007). RN [14] RP X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS), SUBUNIT STRUCTURE, AND PH RP DEPENDENCE. RX PubMed=11373617; DOI=10.1038/88563; RA Ha N.-C., Oh S.-T., Sung J.Y., Cha K.A., Lee M.H., Oh B.-H.; RT "Supramolecular assembly and acid resistance of Helicobacter pylori RT urease."; RL Nat. Struct. Biol. 8:505-509(2001). CC -!- FUNCTION: Ammonia produced by ureolysis increases the gastric pH CC thereby providing an environment permissive for colonization of CC the stomach. {ECO:0000269|PubMed:8039935}. CC -!- CATALYTIC ACTIVITY: Urea + H(2)O = CO(2) + 2 NH(3). CC {ECO:0000255|HAMAP-Rule:MF_01955, ECO:0000269|PubMed:1612735, CC ECO:0000269|PubMed:2188975}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.48 mM for urea {ECO:0000269|PubMed:2188975}; CC Vmax=1.1 mmol/min/mg enzyme {ECO:0000269|PubMed:2188975}; CC pH dependence: CC Optimum pH is 8.0. Active from pH 4.0 to 10.0. In unbuffered CC solutions, the dodecameric complex is active at pH 3.0. CC {ECO:0000269|PubMed:11373617, ECO:0000269|PubMed:2188975}; CC -!- PATHWAY: Nitrogen metabolism; urea degradation; CO(2) and NH(3) CC from urea (urease route): step 1/1. {ECO:0000255|HAMAP- CC Rule:MF_01955}. CC -!- SUBUNIT: Heterohexamer of 3 UreA (alpha) and 3 UreB (beta) CC subunits. Four heterohexamers assemble to form a 16 nm dodecameric CC complex. {ECO:0000255|HAMAP-Rule:MF_01955, CC ECO:0000269|PubMed:11373617}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01955, CC ECO:0000269|PubMed:8641799}. Note=Also associates with the outer CC membrane upon autolysis of neighboring bacteria. CC -!- INDUCTION: By nickel ions. {ECO:0000269|PubMed:11447165}. CC -!- DISRUPTION PHENOTYPE: Cells do not express urease. CC {ECO:0000269|PubMed:1313413}. CC -!- MISCELLANEOUS: The novel dodecameric structure of the enzyme may CC allow it to remain active at the cell surface at acidic gastric CC pH. Within this dodecameric structure the 12 active sites are CC clustered within the interior of the proteinaceous shell. This may CC allow a high local concentration of ammonia within the enzyme CC which may protect the nickel-chelating groups from protonation. CC -!- SIMILARITY: In the N-terminal section; belongs to the urease gamma CC subunit family. {ECO:0000255|HAMAP-Rule:MF_01955}. CC -!- SIMILARITY: In the C-terminal section; belongs to the urease beta CC subunit family. {ECO:0000255|HAMAP-Rule:MF_01955}. CC -!- CAUTION: The orthologous protein is known as the gamma/beta CC subunit (UreAB) in most other bacteria. {ECO:0000305}. CC -!- WEB RESOURCE: Name=Protein Spotlight; Note=Going unnoticed - Issue CC 95 of June 2008; CC URL="http://web.expasy.org/spotlight/back_issues/095"; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; X17079; CAA34932.1; -; Genomic_DNA. DR EMBL; M60398; AAA25020.1; -; Genomic_DNA. DR EMBL; AB032429; BAA84532.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07144.1; -; Genomic_DNA. DR PIR; A38537; URKCAP. DR RefSeq; NP_206873.1; NC_000915.1. DR RefSeq; WP_000779223.1; NC_018939.1. DR PDB; 1E9Y; X-ray; 3.00 A; A=1-238. DR PDB; 1E9Z; X-ray; 3.00 A; A=1-238. DR PDBsum; 1E9Y; -. DR PDBsum; 1E9Z; -. DR ProteinModelPortal; P14916; -. DR SMR; P14916; 1-238. DR DIP; DIP-3146N; -. DR IntAct; P14916; 6. DR MINT; MINT-180633; -. DR STRING; 85962.HP0073; -. DR PaxDb; P14916; -. DR PRIDE; P14916; -. DR DNASU; 900171; -. DR EnsemblBacteria; AAD07144; AAD07144; HP_0073. DR GeneID; 900171; -. DR KEGG; heo:C694_00355; -. DR KEGG; hpy:HP0073; -. DR PATRIC; 20591349; VBIHelPyl33062_0076. DR eggNOG; ENOG4108YZ9; Bacteria. DR eggNOG; COG0831; LUCA. DR eggNOG; COG0832; LUCA. DR KO; K14048; -. DR OMA; ISMEIME; -. DR OrthoDB; EOG69PQ9G; -. DR BioCyc; HPY:HP0073-MONOMER; -. DR UniPathway; UPA00258; UER00370. DR EvolutionaryTrace; P14916; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016151; F:nickel cation binding; IEA:InterPro. DR GO; GO:0009039; F:urease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR GO; GO:0043419; P:urea catabolic process; IMP:CACAO. DR Gene3D; 2.10.150.10; -; 1. DR Gene3D; 3.30.280.10; -; 1. DR HAMAP; MF_01954; Urease_beta; 1. DR HAMAP; MF_01955; Urease_beta_gamma; 1. DR InterPro; IPR002019; Urease_beta. DR InterPro; IPR008223; Urease_gamma-beta_su. DR InterPro; IPR002026; Urease_gamma/gamma-beta_su. DR Pfam; PF00699; Urease_beta; 1. DR Pfam; PF00547; Urease_gamma; 1. DR PIRSF; PIRSF001225; Urease_gammabeta; 1. DR ProDom; PD002319; Urease_gamma_reg; 1. DR SUPFAM; SSF51278; SSF51278; 1. DR SUPFAM; SSF54111; SSF54111; 1. DR TIGRFAMs; TIGR00192; urease_beta; 1. DR TIGRFAMs; TIGR00193; urease_gam; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; KW Hydrolase; Reference proteome; Virulence. FT CHAIN 1 238 Urease subunit alpha. FT /FTId=PRO_0000098075. FT REGION 1 102 Urease gamma. FT REGION 103 238 Urease beta. FT CONFLICT 14 14 H -> S (in Ref. 5; AA sequence). FT {ECO:0000305}. FT CONFLICT 37 37 A -> R (in Ref. 1; CAA34932). FT {ECO:0000305}. FT CONFLICT 49 49 A -> R (in Ref. 1; CAA34932). FT {ECO:0000305}. FT CONFLICT 132 133 KN -> PP (in Ref. 1; CAA34932). FT {ECO:0000305}. FT HELIX 5 25 {ECO:0000244|PDB:1E9Y}. FT HELIX 32 49 {ECO:0000244|PDB:1E9Y}. FT HELIX 54 60 {ECO:0000244|PDB:1E9Y}. FT HELIX 61 63 {ECO:0000244|PDB:1E9Y}. FT TURN 67 69 {ECO:0000244|PDB:1E9Y}. FT HELIX 74 77 {ECO:0000244|PDB:1E9Y}. FT STRAND 80 87 {ECO:0000244|PDB:1E9Y}. FT STRAND 90 97 {ECO:0000244|PDB:1E9Y}. FT STRAND 117 119 {ECO:0000244|PDB:1E9Y}. FT TURN 120 123 {ECO:0000244|PDB:1E9Y}. FT STRAND 128 133 {ECO:0000244|PDB:1E9Y}. FT STRAND 135 137 {ECO:0000244|PDB:1E9Y}. FT STRAND 139 142 {ECO:0000244|PDB:1E9Y}. FT HELIX 147 149 {ECO:0000244|PDB:1E9Y}. FT STRAND 154 156 {ECO:0000244|PDB:1E9Y}. FT HELIX 158 161 {ECO:0000244|PDB:1E9Y}. FT STRAND 164 166 {ECO:0000244|PDB:1E9Y}. FT STRAND 173 176 {ECO:0000244|PDB:1E9Y}. FT STRAND 181 188 {ECO:0000244|PDB:1E9Y}. FT HELIX 208 221 {ECO:0000244|PDB:1E9Y}. SQ SEQUENCE 238 AA; 26540 MW; 4E77328669CD9A2D CRC64; MKLTPKELDK LMLHYAGELA KKRKEKGIKL NYVEAVALIS AHIMEEARAG KKTAAELMQE GRTLLKPDDV MDGVASMIHE VGIEAMFPDG TKLVTVHTPI EANGKLVPGE LFLKNEDITI NEGKKAVSVK VKNVGDRPVQ IGSHFHFFEV NRCLDFDREK TFGKRLDIAS GTAVRFEPGE EKSVELIDIG GNRRIFGFNA LVDRQADNES KKIALHRAKE RGFHGAKSDD NYVKTIKE // ID UREG_HELPY Reviewed; 199 AA. AC Q09066; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 107. DE RecName: Full=Urease accessory protein UreG {ECO:0000255|HAMAP-Rule:MF_01389}; GN Name=ureG {ECO:0000255|HAMAP-Rule:MF_01389}; GN OrderedLocusNames=HP_0068; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND DISRUPTION PHENOTYPE. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP MUTAGENESIS OF LYS-14. RC STRAIN=ATCC 43504 / NCTC 11637 / JCM 7653 / RPH 13487; RX PubMed=14521881; DOI=10.1016/S0882-4010(03)00151-7; RA Mehta N., Benoit S., Maier R.J.; RT "Roles of conserved nucleotide-binding domains in accessory proteins, RT HypB and UreG, in the maturation of nickel-enzymes required for RT efficient Helicobacter pylori colonization."; RL Microb. Pathog. 35:229-234(2003). RN [4] RP REVIEW ON VIRULENCE OF H.PYLORI. RX PubMed=17313591; DOI=10.1111/j.1574-6968.2007.00648.x; RA Clyne M., Dolan B., Reeves E.P.; RT "Bacterial factors that mediate colonization of the stomach and RT virulence of Helicobacter pylori."; RL FEMS Microbiol. Lett. 268:135-143(2007). CC -!- FUNCTION: Facilitates the functional incorporation of the urease CC nickel metallocenter. This process requires GTP hydrolysis, CC probably effectuated by UreG. {ECO:0000255|HAMAP-Rule:MF_01389}. CC -!- SUBUNIT: Homodimer. UreH, UreF and UreG form a complex that acts CC as a GTP-hydrolysis-dependent molecular chaperone, activating the CC urease apoprotein by helping to assemble the nickel containing CC metallocenter of UreC. The UreE protein probably delivers the CC nickel. {ECO:0000255|HAMAP-Rule:MF_01389}. CC -!- INTERACTION: CC Q09064:ureE; NbExp=3; IntAct=EBI-7742750, EBI-7742396; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01389}. CC -!- DISRUPTION PHENOTYPE: Cells do not express urease. CC {ECO:0000269|PubMed:1313413}. CC -!- SIMILARITY: Belongs to the SIMIBI class G3E GTPase family. UreG CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01389}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M84338; AAA25025.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07131.1; -; Genomic_DNA. DR PIR; D64528; D64528. DR RefSeq; NP_206868.1; NC_000915.1. DR RefSeq; WP_000238762.1; NC_018939.1. DR PDB; 4HI0; X-ray; 2.35 A; E/F=1-199. DR PDBsum; 4HI0; -. DR ProteinModelPortal; Q09066; -. DR DIP; DIP-3131N; -. DR IntAct; Q09066; 2. DR MINT; MINT-177524; -. DR STRING; 85962.HP0068; -. DR PaxDb; Q09066; -. DR PRIDE; Q09066; -. DR DNASU; 899102; -. DR EnsemblBacteria; AAD07131; AAD07131; HP_0068. DR GeneID; 899102; -. DR KEGG; heo:C694_00325; -. DR KEGG; hpy:HP0068; -. DR PATRIC; 20591337; VBIHelPyl33062_0070. DR eggNOG; ENOG4105E8T; Bacteria. DR eggNOG; COG0378; LUCA. DR KO; K03189; -. DR OMA; REDCSIN; -. DR OrthoDB; EOG6RC3T9; -. DR BioCyc; HPY:HP0068-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01389; UreG; 1. DR InterPro; IPR003495; CobW/HypB/UreG_dom. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004400; UreG. DR PANTHER; PTHR31715; PTHR31715; 1. DR Pfam; PF02492; cobW; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00101; ureG; 1. PE 1: Evidence at protein level; KW 3D-structure; Chaperone; Complete proteome; Cytoplasm; GTP-binding; KW Nickel insertion; Nucleotide-binding; Reference proteome; Virulence. FT CHAIN 1 199 Urease accessory protein UreG. FT /FTId=PRO_0000067667. FT NP_BIND 8 15 GTP. {ECO:0000255|HAMAP-Rule:MF_01389}. FT MUTAGEN 14 14 K->A: No urease activity, no effect on FT hydrogenase activity. Normal amounts of FT apourease and UreG protein are produced. FT {ECO:0000269|PubMed:14521881}. FT CONFLICT 102 102 D -> S (in Ref. 1; AAA25025). FT {ECO:0000305}. FT CONFLICT 167 176 MRGEKPFIFT -> IAAKSPLFLP (in Ref. 1; FT AAA25025). {ECO:0000305}. FT STRAND 2 7 {ECO:0000244|PDB:4HI0}. FT HELIX 14 25 {ECO:0000244|PDB:4HI0}. FT TURN 26 28 {ECO:0000244|PDB:4HI0}. FT STRAND 31 35 {ECO:0000244|PDB:4HI0}. FT HELIX 41 51 {ECO:0000244|PDB:4HI0}. FT HELIX 55 57 {ECO:0000244|PDB:4HI0}. FT STRAND 58 60 {ECO:0000244|PDB:4HI0}. FT HELIX 67 71 {ECO:0000244|PDB:4HI0}. FT HELIX 76 88 {ECO:0000244|PDB:4HI0}. FT STRAND 94 98 {ECO:0000244|PDB:4HI0}. FT TURN 110 112 {ECO:0000244|PDB:4HI0}. FT STRAND 114 121 {ECO:0000244|PDB:4HI0}. FT TURN 122 124 {ECO:0000244|PDB:4HI0}. FT HELIX 128 131 {ECO:0000244|PDB:4HI0}. FT HELIX 134 137 {ECO:0000244|PDB:4HI0}. FT STRAND 140 145 {ECO:0000244|PDB:4HI0}. FT HELIX 147 149 {ECO:0000244|PDB:4HI0}. FT HELIX 150 153 {ECO:0000244|PDB:4HI0}. FT HELIX 157 168 {ECO:0000244|PDB:4HI0}. FT STRAND 173 175 {ECO:0000244|PDB:4HI0}. FT TURN 178 181 {ECO:0000244|PDB:4HI0}. FT HELIX 184 194 {ECO:0000244|PDB:4HI0}. SQ SEQUENCE 199 AA; 21955 MW; A23E448EB6A208B1 CRC64; MVKIGVCGPV GSGKTALIEA LTRHMSKDYD MAVITNDIYT KEDAEFMCKN SVMPRERIIG VETGGCPHTA IREDASMNLE AVEEMHGRFP NLELLLIESG GDNLSATFNP ELADFTIFVI DVAEGDKIPR KGGPGITRSD LLVINKIDLA PYVGADLKVM ERDSKKMRGE KPFIFTNIRA KEGLDDVIAW IKRNALLED // ID UVRC_HELPY Reviewed; 594 AA. AC P56428; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=UvrABC system protein C {ECO:0000255|HAMAP-Rule:MF_00203}; DE Short=Protein UvrC {ECO:0000255|HAMAP-Rule:MF_00203}; DE AltName: Full=Excinuclease ABC subunit C {ECO:0000255|HAMAP-Rule:MF_00203}; GN Name=uvrC {ECO:0000255|HAMAP-Rule:MF_00203}; GN OrderedLocusNames=HP_0821; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The UvrABC repair system catalyzes the recognition and CC processing of DNA lesions. UvrC both incises the 5' and 3' sides CC of the lesion. The N-terminal half is responsible for the 3' CC incision and the C-terminal half is responsible for the 5' CC incision. {ECO:0000255|HAMAP-Rule:MF_00203}. CC -!- SUBUNIT: Interacts with UvrB in an incision complex. CC {ECO:0000255|HAMAP-Rule:MF_00203}. CC -!- INTERACTION: CC Self; NbExp=3; IntAct=EBI-7556231, EBI-7556231; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00203}. CC -!- SIMILARITY: Belongs to the UvrC family. {ECO:0000255|HAMAP- CC Rule:MF_00203}. CC -!- SIMILARITY: Contains 1 GIY-YIG domain. {ECO:0000255|HAMAP- CC Rule:MF_00203}. CC -!- SIMILARITY: Contains 1 UVR domain. {ECO:0000255|HAMAP- CC Rule:MF_00203}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07868.1; -; Genomic_DNA. DR PIR; E64622; E64622. DR RefSeq; NP_207614.1; NC_000915.1. DR RefSeq; WP_000774319.1; NC_018939.1. DR ProteinModelPortal; P56428; -. DR DIP; DIP-3436N; -. DR IntAct; P56428; 12. DR MINT; MINT-165542; -. DR STRING; 85962.HP0821; -. DR PaxDb; P56428; -. DR PRIDE; P56428; -. DR EnsemblBacteria; AAD07868; AAD07868; HP_0821. DR GeneID; 899361; -. DR KEGG; heo:C694_04205; -. DR KEGG; hpy:HP0821; -. DR PATRIC; 20592931; VBIHelPyl33062_0854. DR eggNOG; ENOG4105CII; Bacteria. DR eggNOG; COG0322; LUCA. DR KO; K03703; -. DR OMA; LFPIRQC; -. DR OrthoDB; EOG6K13R9; -. DR BioCyc; HPY:HP0821-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009380; C:excinuclease repair complex; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0006289; P:nucleotide-excision repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1440.10; -; 1. DR Gene3D; 4.10.860.10; -; 1. DR HAMAP; MF_00203; UvrC; 1. DR InterPro; IPR027299; GIY-YIG_dom. DR InterPro; IPR000305; GIY-YIG_SF. DR InterPro; IPR010994; RuvA_2-like. DR InterPro; IPR001943; UVR_dom. DR InterPro; IPR004791; UvrC. DR InterPro; IPR001162; UvrC_homol_region. DR Pfam; PF01541; GIY-YIG; 1. DR Pfam; PF02151; UVR; 1. DR Pfam; PF08459; UvrC_HhH_N; 1. DR SMART; SM00465; GIYc; 1. DR SUPFAM; SSF46600; SSF46600; 1. DR SUPFAM; SSF47781; SSF47781; 1. DR SUPFAM; SSF82771; SSF82771; 1. DR TIGRFAMs; TIGR00194; uvrC; 1. DR PROSITE; PS50164; GIY_YIG; 1. DR PROSITE; PS50151; UVR; 1. DR PROSITE; PS50165; UVRC; 1. PE 1: Evidence at protein level; KW Complete proteome; Cytoplasm; DNA damage; DNA excision; DNA repair; KW Excision nuclease; Reference proteome; SOS response. FT CHAIN 1 594 UvrABC system protein C. FT /FTId=PRO_0000138305. FT DOMAIN 13 99 GIY-YIG. {ECO:0000255|HAMAP- FT Rule:MF_00203}. FT DOMAIN 205 240 UVR. {ECO:0000255|HAMAP-Rule:MF_00203}. SQ SEQUENCE 594 AA; 68680 MW; 2550E9FE4A5FBAC6 CRC64; MADLLSSLKN LPNSSGVYQY FDKNRQLLYI GKAKNLKKRI KSYFSIRNNE ITPNHRASLR IQMMVKQIAF LETILVENEQ DALILENSLI KQLKPKYNIL LRDDKTYPYI YMDFSTDFPI PLITRKILKQ PGVKYFGPFT SGAKDILDSL YELLPLVQKK NCIKDKKACI FYQIERCKAP CENKITKEEY LKIAKECLEM IENKDRLIKE LELKMERLSN NLRFEEALIY RDRIAKIQKI APFTCMDLAK LYDLDIFAFY GASNKAVLVK MFMRGGKIIS SAFEKIHSLN GFDTDEAMKQ AIINHYQSHL PLMPEQILLN ACSNETLKEL QEFISHQYSK KIALSIPKKG DKLALIEIAM KNAQEIFSQE KTSNEDLILE EARSLFKLEC MPYRVEIFDT SHHSSSQCVG GMVVYENNAF QKNSYRRYHL KGSDEYTQMS ELLTRRALDF AKEPPPNLWV IDGGRAQLNI ALEILKSSGS FVEVIAISKE KRDSKAYRSK GGAKDIIHTP SDTFKLLPSD KRLQWVQKLR DESHRYAINF HRSTKLKNMK QIALLKEKGI GEASVKKLLD YFGSFEAIEK ASEQEKNAVL KKRI // ID UNG_HELPY Reviewed; 233 AA. AC P56397; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Uracil-DNA glycosylase; DE Short=UDG; DE EC=3.2.2.27; GN Name=ung; OrderedLocusNames=HP_1347; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Excises uracil residues from the DNA which can arise as CC a result of misincorporation of dUMP residues by DNA polymerase or CC due to deamination of cytosine. {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: Hydrolyzes single-stranded DNA or mismatched CC double-stranded DNA and polynucleotides, releasing free uracil. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. CC -!- SIMILARITY: Belongs to the uracil-DNA glycosylase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08392.1; -; Genomic_DNA. DR PIR; C64688; C64688. DR RefSeq; NP_208139.1; NC_000915.1. DR RefSeq; WP_000764827.1; NC_018939.1. DR ProteinModelPortal; P56397; -. DR STRING; 85962.HP1347; -. DR PaxDb; P56397; -. DR PRIDE; P56397; -. DR EnsemblBacteria; AAD08392; AAD08392; HP_1347. DR GeneID; 900356; -. DR KEGG; heo:C694_06950; -. DR KEGG; hpy:HP1347; -. DR PATRIC; 20594079; VBIHelPyl33062_1410. DR eggNOG; ENOG4105D5S; Bacteria. DR eggNOG; COG0692; LUCA. DR KO; K03648; -. DR OMA; IALIPKN; -. DR OrthoDB; EOG6MSS63; -. DR BioCyc; HPY:HP1347-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004844; F:uracil DNA N-glycosylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006284; P:base-excision repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.470.10; -; 1. DR HAMAP; MF_00148; UDG; 1. DR InterPro; IPR018085; Ura-DNA_Glyclase_AS. DR InterPro; IPR002043; Ura_DNA_glycsylse. DR InterPro; IPR005122; Uracil-DNA_glycosylase-like. DR PANTHER; PTHR11264; PTHR11264; 1. DR Pfam; PF03167; UDG; 1. DR SMART; SM00986; UDG; 1. DR SUPFAM; SSF52141; SSF52141; 1. DR TIGRFAMs; TIGR00628; ung; 1. DR PROSITE; PS00130; U_DNA_GLYCOSYLASE; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; DNA damage; DNA repair; Glycosidase; KW Hydrolase; Reference proteome. FT CHAIN 1 233 Uracil-DNA glycosylase. FT /FTId=PRO_0000176102. FT ACT_SITE 70 70 Proton acceptor. {ECO:0000250}. SQ SEQUENCE 233 AA; 26297 MW; 83BE8E39E6854B5E CRC64; MKLFDYAPLS LAWREFLQSE FKKPYFLEIE KRYLEALKIP KTIFPKSSNL FYALNLTPPC AVKIILLGQD PYHSTYLEND QELPVAMGLS FSVEKNAPIP PSLKNIFKEL HANLGVPVPC CGDLSAWAKR GMLLLNAILS VEKNQAASHQ YIGWEAFSDQ ILMRLFETTA PLIVVLLGKV AQKKIALIPK NKHIIITAPH PSPLSRGFLG SGVFTSVQKA YREVYRKDFD FSL // ID VDLC_HELPY Reviewed; 284 AA. AC O05730; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-MAY-2016, entry version 82. DE RecName: Full=Probable short-chain type dehydrogenase/reductase VdlC; DE EC=1.-.-.-; GN Name=vdlC; OrderedLocusNames=HP_0890; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9139899; RA Cao P., Cover T.L.; RT "High-level genetic diversity in the vapD chromosomal region of RT Helicobacter pylori."; RL J. Bacteriol. 179:2852-2856(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07938.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U94318; AAC45243.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07938.1; ALT_INIT; Genomic_DNA. DR PIR; B64631; B64631. DR PIR; T09452; T09452. DR RefSeq; NP_207683.1; NC_000915.1. DR ProteinModelPortal; O05730; -. DR STRING; 85962.HP0890; -. DR PaxDb; O05730; -. DR EnsemblBacteria; AAD07938; AAD07938; HP_0890. DR GeneID; 899418; -. DR KEGG; hpy:HP0890; -. DR PATRIC; 20593069; VBIHelPyl33062_0922. DR eggNOG; ENOG4105E1F; Bacteria. DR eggNOG; COG1028; LUCA. DR OrthoDB; EOG6N3CR8; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 2. DR Pfam; PF00106; adh_short; 1. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 3: Inferred from homology; KW Complete proteome; Oxidoreductase; Reference proteome. FT CHAIN 1 284 Probable short-chain type FT dehydrogenase/reductase VdlC. FT /FTId=PRO_0000054805. FT NP_BIND 10 36 NAD or NADP. {ECO:0000250}. FT ACT_SITE 153 153 Proton acceptor. {ECO:0000255|PROSITE- FT ProRule:PRU10001}. FT BINDING 140 140 Substrate. {ECO:0000250}. FT CONFLICT 71 71 V -> A (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 80 81 KY -> DH (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 132 132 H -> Y (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 202 205 SEDS -> NKNG (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 212 212 N -> D (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 216 216 S -> T (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 219 220 SG -> AS (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 224 224 N -> K (in Ref. 1; AAC45243). FT {ECO:0000305}. FT CONFLICT 227 228 SP -> NA (in Ref. 1). {ECO:0000305}. FT CONFLICT 230 230 A -> E (in Ref. 1). {ECO:0000305}. FT CONFLICT 262 262 Q -> R (in Ref. 1; AAC45243). FT {ECO:0000305}. SQ SEQUENCE 284 AA; 31415 MW; 7B949DAF34DDEB5B CRC64; MGVGEKKESQ KVAIITGASS GIGLECALML LDQGYKVYAL SRHATLCVAL NHALCESVDI DVSDSNALKE VFSNISAKEK YCDVLINSAG YGVFGSVEDT PIEEVKKQFS VNFFALCEVV QFCLPLLKNK PHSKIFNLSS IAGRVSMLFL GHYSASKHAL EAYSDALRLE LKPFNVQVCL IEPGPVKSNW EKTAFSVENF ESEDSLYALE VNAAKSFYSG VYQNALSPKA VAQKIVFLSM SQKIKARYLI GLKTQLLLAL YQILPSSWYD SLFRLIVLKR KRDA // ID UREE_HELPY Reviewed; 170 AA. AC Q09064; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 100. DE RecName: Full=Urease accessory protein UreE {ECO:0000255|HAMAP-Rule:MF_00822}; GN Name=ureE {ECO:0000255|HAMAP-Rule:MF_00822}; GN OrderedLocusNames=HP_0070; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP REVIEW ON VIRULENCE OF H.PYLORI. RX PubMed=17313591; DOI=10.1111/j.1574-6968.2007.00648.x; RA Clyne M., Dolan B., Reeves E.P.; RT "Bacterial factors that mediate colonization of the stomach and RT virulence of Helicobacter pylori."; RL FEMS Microbiol. Lett. 268:135-143(2007). CC -!- FUNCTION: Involved in urease metallocenter assembly. Binds nickel. CC Probably functions as a nickel donor during metallocenter CC assembly. {ECO:0000255|HAMAP-Rule:MF_00822}. CC -!- INTERACTION: CC Q09066:ureG; NbExp=3; IntAct=EBI-7742396, EBI-7742750; CC -!- SUBCELLULAR LOCATION: Cytoplasm. CC -!- SIMILARITY: Belongs to the UreE family. {ECO:0000255|HAMAP- CC Rule:MF_00822}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M84338; AAA25023.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07133.1; -; Genomic_DNA. DR PIR; B41834; B41834. DR RefSeq; NP_206870.1; NC_000915.1. DR RefSeq; WP_000583097.1; NC_018939.1. DR PDB; 3L9Z; X-ray; 2.08 A; A=1-170. DR PDB; 3LA0; X-ray; 2.86 A; A/B/C/D=1-170. DR PDB; 3NXZ; X-ray; 2.70 A; A/B/C/D=1-170. DR PDB; 3NY0; X-ray; 3.09 A; A/B/C/D=1-170. DR PDB; 3TJ8; X-ray; 1.59 A; A/B=1-170. DR PDB; 3TJ9; X-ray; 2.52 A; A/B/C/D=1-170. DR PDB; 3TJA; X-ray; 2.00 A; A/B/C/D=1-170. DR PDBsum; 3L9Z; -. DR PDBsum; 3LA0; -. DR PDBsum; 3NXZ; -. DR PDBsum; 3NY0; -. DR PDBsum; 3TJ8; -. DR PDBsum; 3TJ9; -. DR PDBsum; 3TJA; -. DR ProteinModelPortal; Q09064; -. DR DIP; DIP-3132N; -. DR IntAct; Q09064; 1. DR MINT; MINT-177496; -. DR STRING; 85962.HP0070; -. DR PaxDb; Q09064; -. DR PRIDE; Q09064; -. DR DNASU; 898943; -. DR EnsemblBacteria; AAD07133; AAD07133; HP_0070. DR GeneID; 898943; -. DR KEGG; heo:C694_00335; -. DR KEGG; hpy:HP0070; -. DR PATRIC; 20591341; VBIHelPyl33062_0072. DR eggNOG; ENOG4105HFU; Bacteria. DR eggNOG; COG2371; LUCA. DR KO; K03187; -. DR OMA; DYVDLEW; -. DR OrthoDB; EOG647V3V; -. DR BioCyc; HPY:HP0070-MONOMER; -. DR EvolutionaryTrace; Q09064; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0018307; P:enzyme active site formation; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR GO; GO:0006461; P:protein complex assembly; IEA:InterPro. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0019627; P:urea metabolic process; IEA:InterPro. DR Gene3D; 3.30.70.790; -; 1. DR HAMAP; MF_00822; UreE; 1. DR InterPro; IPR012406; UreE. DR InterPro; IPR007864; UreE_C_dom. DR InterPro; IPR004029; UreE_N. DR Pfam; PF05194; UreE_C; 1. DR Pfam; PF02814; UreE_N; 1. DR PIRSF; PIRSF036402; Ureas_acces_UreE; 1. DR SMART; SM00988; UreE_N; 1. DR SUPFAM; SSF69287; SSF69287; 1. DR SUPFAM; SSF69737; SSF69737; 1. PE 1: Evidence at protein level; KW 3D-structure; Chaperone; Complete proteome; Cytoplasm; Nickel; KW Nickel insertion; Reference proteome; Virulence. FT CHAIN 1 170 Urease accessory protein UreE. FT /FTId=PRO_0000067633. FT CONFLICT 7 7 V -> I (in Ref. 1; AAA25023). FT {ECO:0000305}. FT CONFLICT 22 22 H -> Y (in Ref. 1; AAA25023). FT {ECO:0000305}. FT CONFLICT 47 47 I -> V (in Ref. 1; AAA25023). FT {ECO:0000305}. FT CONFLICT 57 57 L -> F (in Ref. 1; AAA25023). FT {ECO:0000305}. FT CONFLICT 169 169 V -> M (in Ref. 1; AAA25023). FT {ECO:0000305}. FT HELIX 10 12 {ECO:0000244|PDB:3TJ8}. FT HELIX 15 17 {ECO:0000244|PDB:3TJ8}. FT STRAND 18 25 {ECO:0000244|PDB:3TJ8}. FT HELIX 27 29 {ECO:0000244|PDB:3TJ8}. FT STRAND 33 38 {ECO:0000244|PDB:3TJ8}. FT STRAND 44 48 {ECO:0000244|PDB:3TJ8}. FT STRAND 61 66 {ECO:0000244|PDB:3TJ8}. FT STRAND 69 75 {ECO:0000244|PDB:3TJ8}. FT STRAND 78 84 {ECO:0000244|PDB:3TJ8}. FT HELIX 88 100 {ECO:0000244|PDB:3TJ8}. FT STRAND 105 107 {ECO:0000244|PDB:3TJ8}. FT STRAND 113 117 {ECO:0000244|PDB:3TJ8}. FT HELIX 120 129 {ECO:0000244|PDB:3TJ8}. FT STRAND 132 138 {ECO:0000244|PDB:3TJ8}. FT HELIX 142 144 {ECO:0000244|PDB:3TJ8}. FT STRAND 152 154 {ECO:0000244|PDB:3TJ9}. SQ SEQUENCE 170 AA; 19382 MW; 2B5FBBE3D0B21B3E CRC64; MIIERLVGNL RDLNPLDFSV DHVDLEWFET RKKIARFKTR QGKDIAIRLK DAPKLGLSQG DILFKEEKEI IAVNILDSEV IHIQAKSVAE VAKICYEIGN RHAALYYGES QFEFKTPFEK PTLALLEKLG VQNRVLSSKL DSKERLTVSM PHSEPNFKVS LASDFKVVVK // ID UREH_HELPY Reviewed; 265 AA. AC Q09067; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 91. DE RecName: Full=Urease accessory protein UreH {ECO:0000255|HAMAP-Rule:MF_01384}; GN Name=ureH {ECO:0000255|HAMAP-Rule:MF_01384}; GN OrderedLocusNames=HP_0067; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND DISRUPTION PHENOTYPE. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP REVIEW ON VIRULENCE OF H.PYLORI. RX PubMed=17313591; DOI=10.1111/j.1574-6968.2007.00648.x; RA Clyne M., Dolan B., Reeves E.P.; RT "Bacterial factors that mediate colonization of the stomach and RT virulence of Helicobacter pylori."; RL FEMS Microbiol. Lett. 268:135-143(2007). CC -!- FUNCTION: Required for maturation of urease via the functional CC incorporation of the urease nickel metallocenter. CC {ECO:0000255|HAMAP-Rule:MF_01384}. CC -!- SUBUNIT: UreH, UreF and UreG form a complex that acts as a GTP- CC hydrolysis-dependent molecular chaperone, activating the urease CC apoprotein by helping to assemble the nickel containing CC metallocenter of UreC. The UreE protein probably delivers the CC nickel. {ECO:0000255|HAMAP-Rule:MF_01384}. CC -!- INTERACTION: CC Q09065:ureF; NbExp=4; IntAct=EBI-7718225, EBI-7743673; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01384}. CC -!- DISRUPTION PHENOTYPE: Cells do not express urease. CC {ECO:0000269|PubMed:1313413}. CC -!- SIMILARITY: Belongs to the UreD family. {ECO:0000255|HAMAP- CC Rule:MF_01384}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M84338; AAA25026.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07130.1; -; Genomic_DNA. DR PIR; C64528; C64528. DR RefSeq; NP_206867.1; NC_000915.1. DR RefSeq; WP_001099471.1; NC_018939.1. DR PDB; 3SF5; X-ray; 2.50 A; B/D=1-265. DR PDB; 4HI0; X-ray; 2.35 A; B/D=1-265. DR PDBsum; 3SF5; -. DR PDBsum; 4HI0; -. DR ProteinModelPortal; Q09067; -. DR DIP; DIP-3135N; -. DR IntAct; Q09067; 4. DR MINT; MINT-184889; -. DR STRING; 85962.HP0067; -. DR PaxDb; Q09067; -. DR PRIDE; Q09067; -. DR DNASU; 899986; -. DR EnsemblBacteria; AAD07130; AAD07130; HP_0067. DR GeneID; 899986; -. DR KEGG; heo:C694_00320; -. DR KEGG; hpy:HP0067; -. DR PATRIC; 20591335; VBIHelPyl33062_0069. DR eggNOG; ENOG4108XNJ; Bacteria. DR eggNOG; COG0829; LUCA. DR KO; K03190; -. DR OMA; SSHLCVK; -. DR OrthoDB; EOG690MJ6; -. DR BioCyc; HPY:HP0067-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR HAMAP; MF_01384; UreD; 1. DR InterPro; IPR002669; UreD. DR Pfam; PF01774; UreD; 1. PE 1: Evidence at protein level; KW 3D-structure; Chaperone; Complete proteome; Cytoplasm; KW Nickel insertion; Reference proteome; Virulence. FT CHAIN 1 265 Urease accessory protein UreH. FT /FTId=PRO_0000067624. FT CONFLICT 57 59 MMR -> LMK (in Ref. 1; AAA25026). FT {ECO:0000305}. FT CONFLICT 214 215 EC -> GL (in Ref. 1; AAA25026). FT {ECO:0000305}. FT CONFLICT 229 229 T -> I (in Ref. 1; AAA25026). FT {ECO:0000305}. FT CONFLICT 236 236 V -> L (in Ref. 1; AAA25026). FT {ECO:0000305}. FT CONFLICT 256 257 LV -> FI (in Ref. 1; AAA25026). FT {ECO:0000305}. FT CONFLICT 261 263 TTQ -> ITP (in Ref. 1; AAA25026). FT {ECO:0000305}. FT STRAND 7 16 {ECO:0000244|PDB:4HI0}. FT STRAND 20 29 {ECO:0000244|PDB:4HI0}. FT STRAND 33 35 {ECO:0000244|PDB:4HI0}. FT STRAND 41 44 {ECO:0000244|PDB:4HI0}. FT STRAND 46 52 {ECO:0000244|PDB:4HI0}. FT STRAND 62 69 {ECO:0000244|PDB:4HI0}. FT STRAND 74 79 {ECO:0000244|PDB:4HI0}. FT STRAND 83 85 {ECO:0000244|PDB:4HI0}. FT STRAND 93 101 {ECO:0000244|PDB:4HI0}. FT STRAND 106 109 {ECO:0000244|PDB:4HI0}. FT STRAND 114 116 {ECO:0000244|PDB:4HI0}. FT STRAND 121 130 {ECO:0000244|PDB:4HI0}. FT STRAND 135 143 {ECO:0000244|PDB:4HI0}. FT TURN 147 150 {ECO:0000244|PDB:4HI0}. FT STRAND 155 166 {ECO:0000244|PDB:4HI0}. FT STRAND 169 178 {ECO:0000244|PDB:4HI0}. FT TURN 180 182 {ECO:0000244|PDB:4HI0}. FT TURN 188 193 {ECO:0000244|PDB:4HI0}. FT STRAND 196 204 {ECO:0000244|PDB:4HI0}. FT HELIX 209 218 {ECO:0000244|PDB:4HI0}. FT STRAND 222 228 {ECO:0000244|PDB:4HI0}. FT STRAND 234 242 {ECO:0000244|PDB:4HI0}. FT HELIX 243 258 {ECO:0000244|PDB:4HI0}. SQ SEQUENCE 265 AA; 29722 MW; 8F16568C7DF9B162 CRC64; MNTYAQESKL RLKTKIGADG RCVIEDNFFT PPFKLMAPFY PKDDLAEIML LAVSPGMMRG DAQDVQLNIG PNCKLRITSQ SFEKIHNTED GFASRDMHIV VGENAFLDFA PFPLIPFENA HFKGNTTISL RSSSQLLYSE IIVAGRVARN ELFKFNRLHT KISILQDEKP IYYDNTILDP KTTDLNNMCM FDGYTHYLNL VLVNCPIELS GVRECIEESE GVDGAVSETA SSHLCVKALA KGSEPLLHLR EKIARLVTQT TTQKV // ID UREI_HELPY Reviewed; 195 AA. AC Q09068; Q8VN83; Q8VN86; Q8VN88; Q8VN89; Q9S0Q4; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 13-APR-2016, entry version 107. DE RecName: Full=Acid-activated urea channel; DE AltName: Full=Urease accessory protein UreI; GN Name=ureI; OrderedLocusNames=HP_0071; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=HPK5; RX PubMed=10844692; DOI=10.1046/j.1365-2958.2000.01918.x; RA Akada J.K., Shirai M., Takeuchi H., Tsuda M., Nakazawa T.; RT "Identification of the urease operon in Helicobacter pylori and its RT control by mRNA decay in response to pH."; RL Mol. Microbiol. 36:1071-1084(2000). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=LSU1037-1, LSU1037-5, LSU1062-1, LSU1062-3, LSU2003-1, RC LSU2003-7, and NQ1712; RX PubMed=11742075; DOI=10.1073/pnas.251396098; RA Falush D., Kraft C., Taylor N.S., Correa P., Fox J.G., Achtman M., RA Suerbaum S.; RT "Recombination and mutation during long-term gastric colonization by RT Helicobacter pylori: estimates of clock rates, recombination size and RT minimal age."; RL Proc. Natl. Acad. Sci. U.S.A. 98:15056-15061(2001). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [5] RP FUNCTION, AND ROLE IN VIRULENCE. RX PubMed=9712811; RA Skouloubris S., Thiberge J.-M., Labigne A., De Reuse H.; RT "The Helicobacter pylori UreI protein is not involved in urease RT activity but is essential for bacterial survival in vivo."; RL Infect. Immun. 66:4517-4521(1998). RN [6] RP CHARACTERIZATION, TOPOLOGY, AND MUTAGENESIS OF HIS-123. RX PubMed=10642549; DOI=10.1126/science.287.5452.482; RA Weeks D.L., Eskandari S., Scott D.R., Sachs G.; RT "A H+-gated urea channel: the link between Helicobacter pylori urease RT and gastric colonization."; RL Science 287:482-485(2000). RN [7] RP FUNCTION, AND MUTAGENESIS. RX PubMed=11442825; DOI=10.1046/j.1365-2958.2001.02466.x; RA Weeks D.L., Sachs G.; RT "Sites of pH regulation of the urea channel of Helicobacter pylori."; RL Mol. Microbiol. 40:1249-1259(2001). RN [8] RP FUNCTION, AND MUTAGENESIS OF HIS-71; HIS-123; HIS-131 AND HIS-193. RX PubMed=11737644; DOI=10.1046/j.1365-2958.2001.02689.x; RA Bury-Mone S., Skouloubris S., Labigne A., De Reuse H.; RT "The Helicobacter pylori UreI protein: role in adaptation to acidity RT and identification of residues essential for its activity and for acid RT activation."; RL Mol. Microbiol. 42:1021-1034(2001). RN [9] RP INTERACTION WITH UREASE. RX PubMed=12388207; DOI=10.1152/ajpgi.00160.2002; RA Voland P., Weeks D.L., Marcus E.A., Prinz C., Sachs G., Scott D.; RT "Interactions among the seven Helicobacter pylori proteins encoded by RT the urease gene cluster."; RL Am. J. Physiol. 284:G96-G106(2003). CC -!- FUNCTION: Functions as a specific, H(+)-activated urea channel CC that increases the rate of urea entry into the cytoplasm, CC resulting in activation of cytoplasmic urease at acidic medium pH. CC Is essential for H.pylori gastric survival and colonization. Is CC necessary for the adaptation of urease activity to the CC extracellular pH, as in the presence of urea, UreI rapidly CC enhances the production of ammonia in the extracellular medium CC when the pH of the medium was decreased to pH5 or below. CC {ECO:0000269|PubMed:11442825, ECO:0000269|PubMed:11737644, CC ECO:0000269|PubMed:9712811}. CC -!- SUBUNIT: Forms a membrane complex with the urease UreA/UreB. CC -!- INTERACTION: CC O34810:HP_1409; NbExp=3; IntAct=EBI-7667832, EBI-7494226; CC O26033:HP_1503; NbExp=3; IntAct=EBI-7667832, EBI-7498734; CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane CC protein. CC -!- MISCELLANEOUS: UreI-mediated transport is urea-specific, passive, CC non-saturable, non-electrogenic, and temperature independent. CC -!- SIMILARITY: Belongs to the AmiS/UreI family. {ECO:0000305}. CC -!- CAUTION: Was originally (PubMed:1313413) thought to be an CC accessory protein required for nickel incorporation at the urease CC active site or for nickel transport. Actually, has been shown CC (PubMed:9712811) not to be required for the assembly of a CC catalytically active urease. {ECO:0000305|PubMed:1313413, CC ECO:0000305|PubMed:9712811}. CC -!- CAUTION: In PubMed:11442825, mutational analysis indicated that CC His-123, His-131, and His-193 were important for acid activation CC of urea uptake in the Xenopus oocytes model, but in H.pylori CC itself His-193 seems to be the only histidine that is crucial for CC UreI activation at low pH. {ECO:0000305|PubMed:11737644}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M84338; AAA25022.1; -; Genomic_DNA. DR EMBL; AB032429; BAA84534.1; -; Genomic_DNA. DR EMBL; AJ418323; CAD11209.1; -; Genomic_DNA. DR EMBL; AJ418324; CAD11212.1; -; Genomic_DNA. DR EMBL; AJ418325; CAD11215.1; -; Genomic_DNA. DR EMBL; AJ418326; CAD11218.1; -; Genomic_DNA. DR EMBL; AJ418327; CAD11221.1; -; Genomic_DNA. DR EMBL; AJ418328; CAD11224.1; -; Genomic_DNA. DR EMBL; AJ418331; CAD11233.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07134.1; -; Genomic_DNA. DR PIR; G64528; A41834. DR RefSeq; NP_206871.1; NC_000915.1. DR RefSeq; WP_000901247.1; NC_018939.1. DR ProteinModelPortal; Q09068; -. DR DIP; DIP-3136N; -. DR IntAct; Q09068; 15. DR MINT; MINT-159922; -. DR STRING; 85962.HP0071; -. DR TCDB; 1.A.29.1.3; the urea/amide channel (uac) family. DR PaxDb; Q09068; -. DR EnsemblBacteria; AAD07134; AAD07134; HP_0071. DR GeneID; 899995; -. DR KEGG; heo:C694_00340; -. DR KEGG; hpy:HP0071; -. DR PATRIC; 20591343; VBIHelPyl33062_0073. DR eggNOG; ENOG4105IW1; Bacteria. DR eggNOG; ENOG4111PI8; LUCA. DR KO; K03191; -. DR OMA; FTYLWVA; -. DR OrthoDB; EOG6X3W4R; -. DR BioCyc; HPY:HP0071-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR003211; AmiSUreI_transpt. DR Pfam; PF02293; AmiS_UreI; 1. PE 1: Evidence at protein level; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport; KW Virulence. FT CHAIN 1 195 Acid-activated urea channel. FT /FTId=PRO_0000067680. FT TOPO_DOM 1 1 Periplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 2 21 Helical. {ECO:0000255}. FT TOPO_DOM 22 33 Cytoplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 34 53 Helical. {ECO:0000255}. FT TOPO_DOM 54 74 Periplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 75 93 Helical. {ECO:0000255}. FT TOPO_DOM 94 103 Cytoplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 104 122 Helical. {ECO:0000255}. FT TOPO_DOM 123 140 Periplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 141 158 Helical. {ECO:0000255}. FT TOPO_DOM 159 171 Cytoplasmic. FT {ECO:0000305|PubMed:10642549}. FT TRANSMEM 172 191 Helical. {ECO:0000255}. FT TOPO_DOM 192 195 Periplasmic. FT {ECO:0000305|PubMed:10642549}. FT VARIANT 42 42 I -> V (in strain: LSU1037-1, LSU1037-5, FT LSU1062-1, LSU1062-3, LSU2003-1 and FT LSU2003-7). FT VARIANT 45 45 I -> V (in strain: 85P, HPK5, LSU1037-1, FT LSU1037-5, LSU1062-1, LSU1062-3, LSU2003- FT 1 and LSU2003-7). FT VARIANT 47 47 V -> A (in strain: LSU2003-1 and LSU2003- FT 7). FT VARIANT 51 51 S -> F (in strain: LSU2003-1 and LSU2003- FT 7). FT VARIANT 53 53 L -> V (in strain: LSU2003-7). FT VARIANT 54 54 H -> N (in strain: 85P, HPK5 and NQ1712). FT VARIANT 66 66 A -> V (in strain: LSU1037-1, LSU1037-5, FT LSU1062-1, LSU1062-3, LSU2003-1, LSU2003- FT 7 and NQ1712). FT VARIANT 74 74 S -> N (in strain: 85P and HPK5). FT VARIANT 77 77 G -> E (in strain: HPK5). FT VARIANT 94 94 N -> S (in strain: HPK5). FT VARIANT 98 98 G -> N (in strain: HPK5). FT VARIANT 116 116 I -> V (in strain: LSU1037-1, LSU1037-5, FT LSU1062-1, LSU1062-3, LSU2003-1 and FT LSU2003-7). FT VARIANT 171 171 P -> L (in strain: LSU1037-1). FT MUTAGEN 71 71 H->G: No loss of acid activation of urea FT uptake. {ECO:0000269|PubMed:11737644}. FT MUTAGEN 123 123 H->R,G: No loss of acid activation of FT urea uptake; when expressed in H.pylori FT itself. Opposite result; when expressed FT in the Xenopus oocytes model. FT {ECO:0000269|PubMed:10642549, FT ECO:0000269|PubMed:11737644}. FT MUTAGEN 131 131 H->G: No loss of acid activation of urea FT uptake. {ECO:0000269|PubMed:11737644}. FT MUTAGEN 193 193 H->G: Loss of acid activation of urea FT uptake. {ECO:0000269|PubMed:11737644}. SQ SEQUENCE 195 AA; 21706 MW; 6A8F3E621CB2B37C CRC64; MLGLVLLYVG IVLISNGICG LTKVDPKSTA VMNFFVGGLS IICNIVVITY SALHPTAPVE GAEDIAQVSH HLTSFYGPAT GLLFGFTYLY AAINHTFGLD WRPYSWYSLF VAINTIPAAI LSHYSDMLDD HKVLGITEGD WWAIIWLAWG VLWLTAFIEN ILKIPLGKFT PWLAIIEGIL TAWIPAWLLF IQHWV // ID UVRA_HELPY Reviewed; 935 AA. AC P56474; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1998, sequence version 1. DT 11-MAY-2016, entry version 112. DE RecName: Full=UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205}; DE Short=UvrA protein {ECO:0000255|HAMAP-Rule:MF_00205}; DE AltName: Full=Excinuclease ABC subunit A {ECO:0000255|HAMAP-Rule:MF_00205}; GN Name=uvrA {ECO:0000255|HAMAP-Rule:MF_00205}; GN OrderedLocusNames=HP_0705; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The UvrABC repair system catalyzes the recognition and CC processing of DNA lesions. UvrA is an ATPase and a DNA-binding CC protein. A damage recognition complex composed of 2 UvrA and 2 CC UvrB subunits scans DNA for abnormalities. When the presence of a CC lesion has been verified by UvrB, the UvrA molecules dissociate. CC {ECO:0000255|HAMAP-Rule:MF_00205}. CC -!- SUBUNIT: Forms a heterotetramer with UvrB during the search for CC lesions. {ECO:0000255|HAMAP-Rule:MF_00205}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00205}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. UvrA CC family. {ECO:0000255|HAMAP-Rule:MF_00205}. CC -!- SIMILARITY: Contains 2 ABC transporter domains. CC {ECO:0000255|HAMAP-Rule:MF_00205}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07755.1; -; Genomic_DNA. DR PIR; A64608; A64608. DR RefSeq; NP_207499.1; NC_000915.1. DR RefSeq; WP_010875529.1; NC_018939.1. DR ProteinModelPortal; P56474; -. DR SMR; P56474; 1-934. DR DIP; DIP-3159N; -. DR IntAct; P56474; 27. DR MINT; MINT-166882; -. DR STRING; 85962.HP0705; -. DR PaxDb; P56474; -. DR PRIDE; P56474; -. DR EnsemblBacteria; AAD07755; AAD07755; HP_0705. DR GeneID; 899317; -. DR KEGG; hpy:HP0705; -. DR PATRIC; 20592695; VBIHelPyl33062_0736. DR eggNOG; ENOG4105C5U; Bacteria. DR eggNOG; COG0178; LUCA. DR KO; K03701; -. DR OMA; GAIKGWD; -. DR OrthoDB; EOG6QK4PS; -. DR BioCyc; HPY:HP0705-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009380; C:excinuclease repair complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006289; P:nucleotide-excision repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1490.20; -; 2. DR Gene3D; 3.40.50.300; -; 4. DR HAMAP; MF_00205; UvrA; 1. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004602; UvrA. DR Pfam; PF00005; ABC_tran; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00630; uvra; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 2. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA excision; KW DNA repair; DNA-binding; Excision nuclease; Metal-binding; KW Nucleotide-binding; Reference proteome; Repeat; SOS response; Zinc; KW Zinc-finger. FT CHAIN 1 935 UvrABC system protein A. FT /FTId=PRO_0000093054. FT DOMAIN 310 579 ABC transporter 1. {ECO:0000255|HAMAP- FT Rule:MF_00205}. FT DOMAIN 599 931 ABC transporter 2. {ECO:0000255|HAMAP- FT Rule:MF_00205}. FT NP_BIND 31 38 ATP. {ECO:0000255|HAMAP-Rule:MF_00205}. FT ZN_FING 254 281 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00205}. FT NP_BIND 631 638 ATP. {ECO:0000255|HAMAP-Rule:MF_00205}. FT ZN_FING 731 757 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00205}. SQ SEQUENCE 935 AA; 104061 MW; 6ACF1A675999E141 CRC64; MDKIIIQGAR ENNLKNIFLE IPKNQFVVFT GLSGSGKSTL AFDTLYAEGQ RRYLESLSSY ARQFLDKVGK PNVDKIEGLT PAIAIDQKTT SKNPRSTVGT ITEIYDYLRL LFARVGEQFC PTCLEPISSM STSDIISQIC HLEENSKIII LAPIIKDKKG SFNDKLESLR LKGYVRAFVD GVMVRLDEEI HLHKTKKHTI EAVVDRVVVN NENASRIASA IEKALKESYG ELEVEILQDN APSIRKHYSE HKACFKCKMS FEELEPLSFS FNSPKGACES CLGLGTKFSL DISKILDPNT PLNQGAIKVI FGYNRSYYAQ MFEGFCEYNG IDSALCFNEL NKEQQDALLY GNGTEISFHF KNSPLKRPWK GIIQIAYDMF KEQKDLSDYM SEKTCSSCEG HRLKASSLSV QVAGLKMADF LTKPIEEVYH FFNDPTHFSY LNEQEKKIAE PILKEILERV FFLYDVGLGY LTLGRDARTI SGGESQRIRI ASQIGSGLTG VLYVLDEPSI GLHEKDTLKL INTLRNLQKK GNTLIVVEHD KETIKHADFV VDIGPKAGRH GGEVVFSGSV KELLQNNHST ALYLNGTKKI ERPKFELPKE KHFLEIKNVN INNIKNLSVQ IPLKQLVCIT GVSGSGKSSL ILQTLLPTAQ TLLNHAKKTQ SLNGVEIVGL EHLDKVIYLD QAPIGKTPRS NPATYTGVMD EIRILFAEQK EAKILGYSAS RFSFNVKGGR CEKCQGDGDI KIEMHFLPDV LVQCDSCKGA KYNPQTLEIK VKGKSIADVL NMSVEEAYEF FAKFPKIAVK LKTLMDVGLG YITLGQNATT LSGGEAQRIK LAKELSKKDT GKTLYILDEP TTGLHFEDVN HLLQVLHSLV ALGNSMLVIE HNLDIIKNAD YIIDMGPDGG DKGGKVIASG TPLEVAQNCE KTQSYTGKFL ALELK // ID UVRB_HELPY Reviewed; 658 AA. AC P94846; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 112. DE RecName: Full=UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204}; DE Short=Protein UvrB {ECO:0000255|HAMAP-Rule:MF_00204}; DE AltName: Full=Excinuclease ABC subunit B {ECO:0000255|HAMAP-Rule:MF_00204}; GN Name=uvrB {ECO:0000255|HAMAP-Rule:MF_00204}; GN OrderedLocusNames=HP_1114; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 53726 / 84-183; RX PubMed=9583946; DOI=10.1016/S0378-1119(98)00028-6; RA Thompson S.A., Latch R.L., Blaser J.M.; RT "Molecular characterization of the Helicobacter pylori uvr B gene."; RL Gene 209:113-122(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The UvrABC repair system catalyzes the recognition and CC processing of DNA lesions. A damage recognition complex composed CC of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon CC binding of the UvrA(2)B(2) complex to a putative damaged site, the CC DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP CC binding by UvrB and probably causes local melting of the DNA CC helix, facilitating insertion of UvrB beta-hairpin between the DNA CC strands. Then UvrB probes one DNA strand for the presence of a CC lesion. If a lesion is found the UvrA subunits dissociate and the CC UvrB-DNA preincision complex is formed. This complex is CC subsequently bound by UvrC and the second UvrB is released. If no CC lesion is found, the DNA wraps around the other UvrB subunit that CC will check the other stand for damage. {ECO:0000255|HAMAP- CC Rule:MF_00204}. CC -!- SUBUNIT: Forms a heterotetramer with UvrA during the search for CC lesions. Interacts with UvrC in an incision complex. CC {ECO:0000255|HAMAP-Rule:MF_00204}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00204}. CC -!- DOMAIN: The beta-hairpin motif is involved in DNA binding. CC {ECO:0000255|HAMAP-Rule:MF_00204}. CC -!- SIMILARITY: Belongs to the UvrB family. {ECO:0000255|HAMAP- CC Rule:MF_00204}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000255|HAMAP-Rule:MF_00204}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000255|HAMAP-Rule:MF_00204}. CC -!- SIMILARITY: Contains 1 UVR domain. {ECO:0000255|HAMAP- CC Rule:MF_00204}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U80807; AAC46270.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08158.1; -; Genomic_DNA. DR PIR; B64659; B64659. DR RefSeq; NP_207905.1; NC_000915.1. DR RefSeq; WP_001127890.1; NC_018939.1. DR ProteinModelPortal; P94846; -. DR SMR; P94846; 3-597. DR DIP; DIP-3238N; -. DR IntAct; P94846; 18. DR MINT; MINT-171452; -. DR STRING; 85962.HP1114; -. DR PaxDb; P94846; -. DR PRIDE; P94846; -. DR EnsemblBacteria; AAD08158; AAD08158; HP_1114. DR GeneID; 899650; -. DR KEGG; heo:C694_05745; -. DR KEGG; hpy:HP1114; -. DR PATRIC; 20593569; VBIHelPyl33062_1164. DR eggNOG; ENOG4105CCW; Bacteria. DR eggNOG; COG0556; LUCA. DR KO; K03702; -. DR OMA; QEYVDRM; -. DR OrthoDB; EOG6B360R; -. DR BioCyc; HPY:HP1114-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006289; P:nucleotide-excision repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 4. DR Gene3D; 4.10.860.10; -; 1. DR HAMAP; MF_00204; UvrB; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001943; UVR_dom. DR InterPro; IPR004807; UvrB. DR InterPro; IPR024759; UvrB_YAD/RRR_dom. DR PANTHER; PTHR24029; PTHR24029; 1. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF04851; ResIII; 1. DR Pfam; PF02151; UVR; 1. DR Pfam; PF12344; UvrB; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF46600; SSF46600; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00631; uvrb; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 2. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS50151; UVR; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA excision; KW DNA repair; Excision nuclease; Nucleotide-binding; Reference proteome; KW SOS response. FT CHAIN 1 658 UvrABC system protein B. FT /FTId=PRO_0000138396. FT DOMAIN 25 414 Helicase ATP-binding. {ECO:0000255|HAMAP- FT Rule:MF_00204}. FT DOMAIN 433 607 Helicase C-terminal. {ECO:0000255|HAMAP- FT Rule:MF_00204}. FT DOMAIN 623 658 UVR. {ECO:0000255|HAMAP-Rule:MF_00204}. FT NP_BIND 38 45 ATP. {ECO:0000255|HAMAP-Rule:MF_00204}. FT MOTIF 91 114 Beta-hairpin. FT VARIANT 59 59 A -> T (in strain: 84-183). FT VARIANT 231 231 K -> R (in strain: 84-183). FT VARIANT 259 259 I -> V (in strain: 84-183). FT VARIANT 376 376 N -> T (in strain: 84-183). FT VARIANT 407 407 K -> Q (in strain: 84-183). FT VARIANT 443 443 L -> S (in strain: 84-183). FT VARIANT 475 475 A -> V (in strain: 84-183). FT VARIANT 501 501 I -> V (in strain: 84-183). FT VARIANT 607 607 R -> K (in strain: 84-183). FT VARIANT 636 637 CT -> HA (in strain: 84-183). SQ SEQUENCE 658 AA; 75916 MW; 06BC0EE689AB3ADE CRC64; MPLFDLKSPY PPAGDQPQAI EALTKSLKNN NHYQTLVGVT GSGKTYTMAN IIAQTNKPAL IMSHNKTLCA QLYSEFKAFF PHNRVEYFIS HFDYYQPESY IPRRDLFIEK DSSINDDLER LRLSATTSLL GYDDVIVIAS VSANYGLGNP EEYLKVMEKI KVGEKRAYKS FLLKLVEMGY SRNEVVFDRG SFRATGECVD IFPAYNDAEF IRIEFFGDEI ERIAVFDALE KNEIKRLDSV MLYAASQFAV GSERLNLAIK SIEDELALRL KFFKEQDKML EYNRLKQRTE HDLEMISATG VCKGIENYAR HFTGKAPNET PFCLFDYLGI FEREFLVIVD ESHVSLPQFG GMYAGDMSRK SVLVEYGFRL PSALDNRPLK FDEFIHKNCQ FLFVSATPNK LELELSKKNV AEQIIRPTGL LDPKFEVRDS DKQVQDLFDE IKLVVARGER VLITTLTKKM AEELCKYYAE WGLKARYMHS EIDAIERNHI IRSLRLKEFD ILIGINLLRE GLDLPEVSLV AIMDADKEGF LRSETSLIQT MGRAARNANG KVLLYAKKIT QSMQKAFEIT SYRRAKQEEF NKIHNITPKT VTRALEEELK LRDDEIRIAK ALKKDKMPKS EREKIIKELD KKMRECTKNL DFEEAMRLRD EIAQLRTL // ID VAPD_HELPY Reviewed; 94 AA. AC O05728; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 82. DE RecName: Full=Endoribonuclease VapD; DE EC=3.1.-.-; DE AltName: Full=Virulence-associated protein D; GN Name=vapD; OrderedLocusNames=HP_0315; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9139899; RA Cao P., Cover T.L.; RT "High-level genetic diversity in the vapD chromosomal region of RT Helicobacter pylori."; RL J. Bacteriol. 179:2852-2856(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS), FUNCTION AS AN RP ENDORIBONUCLEASE, SUBUNIT, AND MUTAGENESIS OF ASP-7; LEU-13; PHE-37; RP SER-43; VAL-74 AND ASP-76. RC STRAIN=ATCC 700392 / 26695; RX PubMed=22241770; DOI=10.1093/nar/gkr1305; RA Kwon A.R., Kim J.H., Park S.J., Lee K.Y., Min Y.H., Im H., Lee I., RA Lee K.Y., Lee B.J.; RT "Structural and biochemical characterization of HP0315 from RT Helicobacter pylori as a VapD protein with an endoribonuclease RT activity."; RL Nucleic Acids Res. 40:4216-4228(2012). CC -!- FUNCTION: Cleaves ssRNA, mostly between U:A; cleavage is not CC dependent on mono- or divalent cations. Can cleave RNAs as short CC as 6 nucleotides. {ECO:0000269|PubMed:22241770}. CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:22241770}. CC -!- MISCELLANEOUS: There is no VapD ortholog in strain J99. CC -!- SIMILARITY: Belongs to the VapD ribonuclease family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U94318; AAC45241.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07379.1; -; Genomic_DNA. DR PIR; C64559; C64559. DR PIR; T09450; T09450. DR RefSeq; NP_207113.1; NC_000915.1. DR RefSeq; WP_000271050.1; NC_018939.1. DR PDB; 3UI3; X-ray; 2.80 A; A/B=1-94. DR PDBsum; 3UI3; -. DR ProteinModelPortal; O05728; -. DR STRING; 85962.HP0315; -. DR PaxDb; O05728; -. DR PRIDE; O05728; -. DR EnsemblBacteria; AAD07379; AAD07379; HP_0315. DR GeneID; 900103; -. DR KEGG; heo:C694_01590; -. DR KEGG; hpy:HP0315; -. DR PATRIC; 20591857; VBIHelPyl33062_0326. DR eggNOG; ENOG4105K60; Bacteria. DR eggNOG; COG3309; LUCA. DR OMA; NMNEDMA; -. DR OrthoDB; EOG6XQ3QN; -. DR BioCyc; HPY:HP0315-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR InterPro; IPR016368; Virulence-assoc_VapD. DR InterPro; IPR019199; Virulence_VapD/CRISPR_Cas2. DR Pfam; PF09827; CRISPR_Cas2; 1. DR PIRSF; PIRSF002882; VapD; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Hydrolase; Nuclease; KW Reference proteome; RNA-binding; Virulence. FT CHAIN 1 94 Endoribonuclease VapD. FT /FTId=PRO_0000217272. FT MUTAGEN 7 7 D->A: Significantly reduced ribonuclease FT activity. {ECO:0000269|PubMed:22241770}. FT MUTAGEN 13 13 L->A: Nearly complete loss of FT ribonuclease activity. FT {ECO:0000269|PubMed:22241770}. FT MUTAGEN 37 37 F->A: Protein unstable. FT {ECO:0000269|PubMed:22241770}. FT MUTAGEN 43 43 S->A: Nearly complete loss of FT ribonuclease activity. FT {ECO:0000269|PubMed:22241770}. FT MUTAGEN 74 74 V->A: Protein unstable. FT {ECO:0000269|PubMed:22241770}. FT MUTAGEN 76 76 D->A: Significantly reduced ribonuclease FT activity. {ECO:0000269|PubMed:22241770}. FT CONFLICT 18 18 G -> K (in Ref. 1; AAC45241). FT {ECO:0000305}. FT CONFLICT 39 39 W -> N (in Ref. 1; AAC45241). FT {ECO:0000305}. FT STRAND 1 8 {ECO:0000244|PDB:3UI3}. FT HELIX 10 16 {ECO:0000244|PDB:3UI3}. FT HELIX 22 34 {ECO:0000244|PDB:3UI3}. FT STRAND 37 40 {ECO:0000244|PDB:3UI3}. FT STRAND 43 47 {ECO:0000244|PDB:3UI3}. FT HELIX 53 65 {ECO:0000244|PDB:3UI3}. FT HELIX 68 73 {ECO:0000244|PDB:3UI3}. FT STRAND 74 87 {ECO:0000244|PDB:3UI3}. FT HELIX 89 93 {ECO:0000244|PDB:3UI3}. SQ SEQUENCE 94 AA; 11189 MW; 2475C5EBDF6F8FBF CRC64; MYALAFDLKI EILKKEYGEP YNKAYDDLRQ ELELLGFEWT QGSVYVNYSK ENTLAQVYKA INKLSQIEWF KKSVRDIRAF KVEDFSDFTE IVKS // ID VACA_HELPY Reviewed; 1290 AA. AC P55981; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Vacuolating cytotoxin autotransporter; DE Contains: DE RecName: Full=Vacuolating cytotoxin; DE Contains: DE RecName: Full=Vacuolating cytotoxin translocator; DE Flags: Precursor; GN Name=vacA; OrderedLocusNames=HP_0887; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Induces vacuolation of eukaryotic cells. Causes CC ulceration and gastric lesions. CC -!- SUBCELLULAR LOCATION: Vacuolating cytotoxin autotransporter: CC Periplasm {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Vacuolating cytotoxin: Secreted. Cell CC surface. CC -!- SUBCELLULAR LOCATION: Vacuolating cytotoxin translocator: Cell CC outer membrane {ECO:0000250}; Multi-pass membrane protein CC {ECO:0000250}. Note=The cleaved C-terminal fragment CC (autotransporter domain) is localized in the outer membrane. CC {ECO:0000250}. CC -!- DOMAIN: The signal peptide, cleaved at the inner membrane, guides CC the autotransporter protein to the periplasmic space. Then, CC insertion of the C-terminal translocator domain in the outer CC membrane forms a hydrophilic pore for the translocation of the CC passenger domain to the bacterial cell surface, with subsequent CC cleavage (By similarity). {ECO:0000250}. CC -!- SIMILARITY: Contains 1 autotransporter (TC 1.B.12) domain. CC {ECO:0000255|PROSITE-ProRule:PRU00556}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07935.1; -; Genomic_DNA. DR PIR; G64630; G64630. DR RefSeq; NP_207680.1; NC_000915.1. DR RefSeq; WP_000405496.1; NC_000915.1. DR ProteinModelPortal; P55981; -. DR SMR; P55981; 391-847. DR DIP; DIP-3244N; -. DR IntAct; P55981; 15. DR MINT; MINT-162149; -. DR STRING; 85962.HP0887; -. DR TCDB; 1.C.9.1.1; the vacuolating cytotoxin (vaca) family. DR PaxDb; P55981; -. DR PRIDE; P55981; -. DR EnsemblBacteria; AAD07935; AAD07935; HP_0887. DR GeneID; 899415; -. DR KEGG; hpy:HP0887; -. DR PATRIC; 20593063; VBIHelPyl33062_0919. DR KO; K11028; -. DR OMA; YNNNNRM; -. DR OrthoDB; EOG6423BG; -. DR BioCyc; HPY:HP0887-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0009986; C:cell surface; IEA:UniProtKB-SubCell. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell. DR GO; GO:0009405; P:pathogenesis; IEA:InterPro. DR Gene3D; 2.40.128.130; -; 1. DR InterPro; IPR005546; Autotransporte_beta. DR InterPro; IPR003842; Vacuolating_cytotoxin. DR Pfam; PF03797; Autotransporter; 1. DR Pfam; PF02691; VacA; 1. DR PRINTS; PR01656; VACCYTOTOXIN. DR SMART; SM00869; Autotransporter; 1. DR SUPFAM; SSF103515; SSF103515; 1. DR PROSITE; PS51208; AUTOTRANSPORTER; 1. PE 3: Inferred from homology; KW Cell outer membrane; Complete proteome; Membrane; Periplasm; KW Reference proteome; Secreted; Signal; Toxin; Transmembrane; KW Transmembrane beta strand. FT SIGNAL 1 33 {ECO:0000255}. FT CHAIN 34 1290 Vacuolating cytotoxin autotransporter. FT /FTId=PRO_0000387586. FT CHAIN 34 ? Vacuolating cytotoxin. FT /FTId=PRO_0000022651. FT CHAIN ? 1290 Vacuolating cytotoxin translocator. FT {ECO:0000255}. FT /FTId=PRO_0000022652. FT DOMAIN 1018 1290 Autotransporter. {ECO:0000255|PROSITE- FT ProRule:PRU00556}. SQ SEQUENCE 1290 AA; 139312 MW; F48B23513447A1AC CRC64; MEIQQTHRKI NRPLVSLALV GALVSITPQQ SHAAFFTTVI IPAIVGGIAT GAAVGTVSGL LGWGLKQAEE ANKTPDKPDK VWRIQAGKGF NEFPNKEYDL YRSLLSSKID GGWDWGNAAT HYWVKGGQWN KLEVDMKDAV GTYNLSGLRN FTGGDLDVNM QKATLRLGQF NGNSFTSYKD SADRTTRVDF NAKNILIDNF LEINNRVGSG AGRKASSTVL TLQASEGITS SKNAEISLYD GATLNLASNS VKLMGNVWMG RLQYVGAYLA PSYSTINTSK VTGEVNFNHL TVGDHNAAQA GIIASNKTHI GTLDLWQSAG LNIIAPPEGG YKDKPKDKPS NTTQNNANNN QQNSAQNNSN TQVINPPNSA QKTEIQPTQV IDGPFAGGKD TVVNIDRINT NADGTIKVGG YKASLTTNAA HLHIGKGGIN LSNQASGRTL LVENLTGNIT VDGPLRVNNQ VGGYALAGSS ANFEFKAGTD TKNGTATFNN DISLGRFVNL KVDAHTANFK GIDTGNGGFN TLDFSGVTGK VNINKLITAS TNVAVKNFNI NELVVKTNGV SVGEYTHFSE DIGSQSRINT VRLETGTRSI FSGGVKFKSG EKLVIDEFYY SPWNYFDARN IKNVEITRKF ASSTPENPWG TSKLMFNNLT LGQNAVMDYS QFSNLTIQGD FINNQGTINY LVRGGQVATL NVGNAAAMFF SNNVDSATGF YQPLMKINSA QDLIKNKEHV LLKAKIIGYG NVSLGTNSIS NVNLIEQFKE RLALYNNNNR MDICVVRNTD DIKACGTAIG NQSMVNNPDN YKYLIGKAWK NIGISKTANG SKISVYYLGN STPTEKGGNT TNLPTNTTSN VRSANNALAQ NAPFAQPSAT PNLVAINQHD FGTIESVFEL ANRSKDIDTL YANSGAQGRD LLQTLLIDSH DAGYARQMID NTSTGEITKQ LNAATTTLNN IASLEHKTSS LQTLSLSNAM ILNSRLVNLS RRHTNNIDSF AQRLQALKDQ KFASLESAAE VLYQFAPKYE KPTNVWANAI GGTSLNNGGN ASLYGTSAGV DAYLNGEVEA IVGGFGSYGY SSFNNQANSL NSGANNTNFG VYSRIFANQH EFDFEAQGAL GSDQSSLNFK SALLRDLNQS YNYLAYSAAT RASYGYDFAF FRNALVLKPS VGVSYNHLGS TNFKSNSNQV ALKNGSSSQH LFNASANVEA RYYYGDTSYF YMNAGVLQEF ANFGSSNAVS LNTFKVNAAH NPLSTHARVM MGGELKLAKE VFLNLGFVYL HNLISNIGHF ASNLGMRYSF // ID VDLD_HELPY Reviewed; 174 AA. AC P0A0Q7; O05729; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2005, sequence version 1. DT 11-MAY-2016, entry version 62. DE RecName: Full=Protein VdlD; GN Name=vdlD; OrderedLocusNames=HP_0891; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9139899; RA Cao P., Cover T.L.; RT "High-level genetic diversity in the vapD chromosomal region of RT Helicobacter pylori."; RL J. Bacteriol. 179:2852-2856(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the acyl coenzyme A hydrolase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 HotDog ACOT-type domain. CC {ECO:0000255|PROSITE-ProRule:PRU01106}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U94318; AAC45242.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07940.1; -; Genomic_DNA. DR PIR; C64631; C64631. DR PIR; T09451; T09451. DR RefSeq; NP_207684.1; NC_000915.1. DR RefSeq; WP_001135603.1; NC_018939.1. DR ProteinModelPortal; P0A0Q7; -. DR IntAct; P0A0Q7; 3. DR MINT; MINT-181752; -. DR STRING; 85962.HP0891; -. DR PaxDb; P0A0Q7; -. DR PRIDE; P0A0Q7; -. DR EnsemblBacteria; AAD07940; AAD07940; HP_0891. DR GeneID; 899419; -. DR KEGG; heo:C694_04575; -. DR KEGG; hpy:HP0891; -. DR PATRIC; 20593071; VBIHelPyl33062_0923. DR eggNOG; ENOG4108S4H; Bacteria. DR eggNOG; COG1607; LUCA. DR OMA; SMDEMVF; -. DR OrthoDB; EOG65XN1H; -. DR BioCyc; HPY:HP0891-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR033120; HOTDOG_ACOT. DR InterPro; IPR029069; HotDog_dom. DR InterPro; IPR006683; Thioestr_dom. DR Pfam; PF03061; 4HBT; 1. DR SUPFAM; SSF54637; SSF54637; 1. DR PROSITE; PS51770; HOTDOG_ACOT; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Reference proteome. FT CHAIN 1 174 Protein VdlD. FT /FTId=PRO_0000053815. FT DOMAIN 20 132 HotDog ACOT-type. {ECO:0000255|PROSITE- FT ProRule:PRU01106}. FT CONFLICT 8 8 H -> R (in Ref. 1; AAC45242). FT {ECO:0000305}. SQ SEQUENCE 174 AA; 19491 MW; 48D2C71C9AD2A534 CRC64; MPQIQSSHSN HFDFTIDTAD RTKLLMSYLV VPTTANFNNV MHGGELLNLL DKVAYVCSTR YCAKGTVTLS VDGVTFKYPI PVGNLLTFLA SINYVGNTSC EVGIKVLSED IKTREITHTN SCYFTMVAVE NGKPTPMPKY EPKTEVEIRR YEGALKRKEM RTRGYLKSGK HEGV // ID UREF_HELPY Reviewed; 254 AA. AC Q09065; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 100. DE RecName: Full=Urease accessory protein UreF {ECO:0000255|HAMAP-Rule:MF_01385}; GN Name=ureF {ECO:0000255|HAMAP-Rule:MF_01385}; GN OrderedLocusNames=HP_0069; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND DISRUPTION PHENOTYPE. RC STRAIN=85P; RX PubMed=1313413; RA Cussac V., Ferrero R.L., Labigne A.; RT "Expression of Helicobacter pylori urease genes in Escherichia coli RT grown under nitrogen-limiting conditions."; RL J. Bacteriol. 174:2466-2473(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP REVIEW ON VIRULENCE OF H.PYLORI. RX PubMed=17313591; DOI=10.1111/j.1574-6968.2007.00648.x; RA Clyne M., Dolan B., Reeves E.P.; RT "Bacterial factors that mediate colonization of the stomach and RT virulence of Helicobacter pylori."; RL FEMS Microbiol. Lett. 268:135-143(2007). CC -!- FUNCTION: Required for maturation of urease via the functional CC incorporation of the urease nickel metallocenter. CC {ECO:0000255|HAMAP-Rule:MF_01385}. CC -!- SUBUNIT: UreH, UreF and UreG form a complex that acts as a GTP- CC hydrolysis-dependent molecular chaperone, activating the urease CC apoprotein by helping to assemble the nickel containing CC metallocenter of UreC. The UreE protein probably delivers the CC nickel. {ECO:0000255|HAMAP-Rule:MF_01385}. CC -!- INTERACTION: CC Q09067:ureH; NbExp=4; IntAct=EBI-7743673, EBI-7718225; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01385}. CC -!- DISRUPTION PHENOTYPE: Cells do not express urease. CC {ECO:0000269|PubMed:1313413}. CC -!- SIMILARITY: Belongs to the UreF family. {ECO:0000255|HAMAP- CC Rule:MF_01385}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M84338; AAA25024.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07132.1; -; Genomic_DNA. DR PIR; E64528; E64528. DR RefSeq; NP_206869.1; NC_000915.1. DR RefSeq; WP_000357404.1; NC_018939.1. DR PDB; 2WGL; X-ray; 2.00 A; A/B/C=1-254. DR PDB; 3CXN; X-ray; 1.55 A; A/B/C=2-254. DR PDB; 3O1Q; X-ray; 1.85 A; A/B/C=1-254. DR PDB; 3SF5; X-ray; 2.50 A; A/C=1-254. DR PDB; 4HI0; X-ray; 2.35 A; A/C=1-254. DR PDBsum; 2WGL; -. DR PDBsum; 3CXN; -. DR PDBsum; 3O1Q; -. DR PDBsum; 3SF5; -. DR PDBsum; 4HI0; -. DR DIP; DIP-3134N; -. DR IntAct; Q09065; 2. DR MINT; MINT-184930; -. DR STRING; 85962.HP0069; -. DR PaxDb; Q09065; -. DR PRIDE; Q09065; -. DR DNASU; 900170; -. DR EnsemblBacteria; AAD07132; AAD07132; HP_0069. DR GeneID; 900170; -. DR KEGG; heo:C694_00330; -. DR KEGG; hpy:HP0069; -. DR PATRIC; 20591339; VBIHelPyl33062_0071. DR eggNOG; ENOG4108YH3; Bacteria. DR eggNOG; COG0830; LUCA. DR KO; K03188; -. DR OMA; ACLLCCH; -. DR OrthoDB; EOG6DG2X9; -. DR BioCyc; HPY:HP0069-MONOMER; -. DR EvolutionaryTrace; Q09065; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016151; F:nickel cation binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006807; P:nitrogen compound metabolic process; IMP:CACAO. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR HAMAP; MF_01385; UreF; 1. DR InterPro; IPR002639; UreF. DR Pfam; PF01730; UreF; 1. DR PIRSF; PIRSF009467; Ureas_acces_UreF; 1. PE 1: Evidence at protein level; KW 3D-structure; Chaperone; Complete proteome; Cytoplasm; KW Nickel insertion; Reference proteome; Virulence. FT CHAIN 1 254 Urease accessory protein UreF. FT /FTId=PRO_0000067648. FT CONFLICT 10 10 T -> I (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 17 17 P -> L (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 25 25 N -> S (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 55 60 ETYIQQ -> LARNLHPA (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 71 71 E -> K (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 103 103 K -> R (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 110 112 VIM -> IIT (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 143 145 MGE -> IGA (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 153 155 KTK -> QTE (in Ref. 1; AAA25024). FT {ECO:0000305}. FT CONFLICT 232 232 T -> A (in Ref. 1; AAA25024). FT {ECO:0000305}. FT TURN 25 28 {ECO:0000244|PDB:3O1Q}. FT HELIX 31 39 {ECO:0000244|PDB:3CXN}. FT STRAND 43 45 {ECO:0000244|PDB:3CXN}. FT HELIX 47 49 {ECO:0000244|PDB:4HI0}. FT HELIX 51 59 {ECO:0000244|PDB:3CXN}. FT HELIX 66 77 {ECO:0000244|PDB:3CXN}. FT HELIX 80 83 {ECO:0000244|PDB:3CXN}. FT HELIX 85 97 {ECO:0000244|PDB:3CXN}. FT HELIX 101 114 {ECO:0000244|PDB:3CXN}. FT HELIX 118 137 {ECO:0000244|PDB:3CXN}. FT HELIX 144 153 {ECO:0000244|PDB:3CXN}. FT HELIX 159 170 {ECO:0000244|PDB:3CXN}. FT HELIX 174 196 {ECO:0000244|PDB:3CXN}. FT HELIX 201 210 {ECO:0000244|PDB:3CXN}. FT HELIX 212 224 {ECO:0000244|PDB:3CXN}. FT HELIX 227 229 {ECO:0000244|PDB:3CXN}. FT HELIX 236 243 {ECO:0000244|PDB:4HI0}. FT HELIX 244 246 {ECO:0000244|PDB:4HI0}. SQ SEQUENCE 254 AA; 28619 MW; 6209F547A96FE028 CRC64; MDKGKSVKST EKSVGMPPKT PKTDNNAHVD NEFLILQVND AVFPIGSYTH SFGLETYIQQ KKVTNKESAL EYLKANLSSQ FLYTEMLSLK LTYESALQQD LKKILGVEEV IMLSTSPMEL RLANQKLGNR FIKTLQAMNE LDMGEFFNAY AQKTKDPTHA TSYGVFAASL GIELKKALRH YLYAQTSNMV INCVKSVPLS QNDGQKILLS LQSPFNQLIE KTLELDESHL CTASVQNDIK AMQHESLYSR LYMS // ID VAD2_HELPY Reviewed; 95 AA. AC O25620; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Endoribonuclease VapD homolog; DE EC=3.1.-.-; DE AltName: Full=Virulence-associated protein D homolog; GN OrderedLocusNames=HP_0967; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Cleaves ssRNA, mostly between U:A. {ECO:0000250}. CC -!- SUBUNIT: Homodimer. {ECO:0000250}. CC -!- MISCELLANEOUS: There is no ortholog for HP0967 in strain J99. CC -!- SIMILARITY: Belongs to the VapD ribonuclease family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08011.1; -; Genomic_DNA. DR PIR; G64640; G64640. DR RefSeq; NP_207759.1; NC_000915.1. DR RefSeq; WP_000271456.1; NC_018939.1. DR ProteinModelPortal; O25620; -. DR IntAct; O25620; 2. DR STRING; 85962.HP0967; -. DR PaxDb; O25620; -. DR PRIDE; O25620; -. DR EnsemblBacteria; AAD08011; AAD08011; HP_0967. DR GeneID; 899500; -. DR KEGG; heo:C694_04980; -. DR KEGG; hpy:HP0967; -. DR PATRIC; 20593247; VBIHelPyl33062_1005. DR eggNOG; ENOG4105Y8T; Bacteria. DR eggNOG; COG3309; LUCA. DR OMA; CFGDETI; -. DR OrthoDB; EOG6VB6WH; -. DR BioCyc; HPY:HP0967-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW. DR GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW. DR InterPro; IPR016368; Virulence-assoc_VapD. DR InterPro; IPR019199; Virulence_VapD/CRISPR_Cas2. DR Pfam; PF09827; CRISPR_Cas2; 1. DR PIRSF; PIRSF002882; VapD; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Nuclease; Reference proteome; Virulence. FT CHAIN 1 95 Endoribonuclease VapD homolog. FT /FTId=PRO_0000217273. SQ SEQUENCE 95 AA; 10778 MW; CC03BE7108D1F1C0 CRC64; MYAVTFDLDT NCLNENAVNL SKVYSDIRKF MEQHGFKWQQ GSVYFGDETI NAVTCVATVQ ILAKQIPSFA VCVKDVRMLK IEENNDLMPA IKIVL // ID XERH_HELPY Reviewed; 362 AA. AC O25386; DT 16-MAR-2016, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 79. DE RecName: Full=Tyrosine recombinase XerH {ECO:0000255|HAMAP-Rule:MF_02054, ECO:0000305}; GN Name=xerH {ECO:0000255|HAMAP-Rule:MF_02054, GN ECO:0000303|PubMed:19727445}; GN OrderedLocusNames=HP_0675 {ECO:0000312|EMBL:AAD07734.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP NOMENCLATURE. RX PubMed=19727445; DOI=10.1371/journal.pone.0006531; RA Carnoy C., Roten C.A.; RT "The dif/Xer recombination systems in proteobacteria."; RL PLoS ONE 4:E6531-E6531(2009). RN [3] RP FUNCTION AS A RECOMBINASE, ENZYME REGULATION, AND DISRUPTION RP PHENOTYPE. RC STRAIN=ATCC 700392 / 26695; RX PubMed=22511919; DOI=10.1371/journal.pone.0033310; RA Debowski A.W., Carnoy C., Verbrugghe P., Nilsson H.O., Gauntlett J.C., RA Fulurija A., Camilleri T., Berg D.E., Marshall B.J., Benghezal M.; RT "Xer recombinase and genome integrity in Helicobacter pylori, a RT pathogen without topoisomerase IV."; RL PLoS ONE 7:E33310-E33310(2012). CC -!- FUNCTION: Site-specific tyrosine recombinase, which acts by CC catalyzing the cutting and rejoining of the recombining DNA CC molecules. Involved in chromosome segregation. May contribute to CC chromosome decatenation. {ECO:0000269|PubMed:22511919}. CC -!- ENZYME REGULATION: FtsK is required for recombination. CC {ECO:0000269|PubMed:22511919}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02054, CC ECO:0000305}. CC -!- DISRUPTION PHENOTYPE: Deletion blocks difH recombination. Deletion CC mutant shows impaired chromosome segregation, slight growth CC defect, UV and ciprofloxacin susceptibility, resistance to CC oxidative stress and inability to colonize mice. CC {ECO:0000269|PubMed:22511919}. CC -!- SIMILARITY: Belongs to the 'phage' integrase family. XerH CC subfamily. {ECO:0000255|HAMAP-Rule:MF_02054, ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07734.1; -; Genomic_DNA. DR PIR; C64604; C64604. DR RefSeq; NP_207469.1; NC_000915.1. DR RefSeq; WP_000682431.1; NC_018939.1. DR ProteinModelPortal; O25386; -. DR STRING; 85962.HP0675; -. DR PaxDb; O25386; -. DR EnsemblBacteria; AAD07734; AAD07734; HP_0675. DR GeneID; 898988; -. DR KEGG; heo:C694_03485; -. DR KEGG; hpy:HP0675; -. DR PATRIC; 20592635; VBIHelPyl33062_0706. DR eggNOG; ENOG4108IYT; Bacteria. DR eggNOG; COG0582; LUCA. DR KO; K04763; -. DR OMA; CKKARNA; -. DR OrthoDB; EOG6PZXFP; -. DR BioCyc; HPY:HP0675-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW. DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW. DR Gene3D; 1.10.443.10; -; 1. DR HAMAP; MF_02054; Recomb_XerH; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 1: Evidence at protein level; KW Cell cycle; Cell division; Chromosome partition; Complete proteome; KW Cytoplasm; DNA integration; DNA recombination; DNA-binding; KW Reference proteome. FT CHAIN 1 362 Tyrosine recombinase XerH. FT /FTId=PRO_0000435726. FT ACT_SITE 213 213 {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. FT ACT_SITE 237 237 {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. FT ACT_SITE 309 309 {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. FT ACT_SITE 312 312 {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. FT ACT_SITE 335 335 {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. FT ACT_SITE 344 344 O-(3'-phospho-DNA)-tyrosine intermediate. FT {ECO:0000250|UniProtKB:P0A8P8, FT ECO:0000255|HAMAP-Rule:MF_02054}. SQ SEQUENCE 362 AA; 41851 MW; C0C3ED465C653C6D CRC64; MKHPLEELKD PTENLLLWIG RFLRYKCTSL SNSQVKDQNK VFECLNELNQ ACSSSQLEKV CKKARNAGLL GINTYALPLL KFHEYFSKAR LITERLAFNS LKNIDEVMLA EFLSVYTGGL SLATKKNYRI ALLGLFSYID KQNQDENEKS YIYNITLKNI SGVNQSAGNK LPTHLNNEEL EKFLESIDKI EMSAKVRARN RLLIKIIVFT GMRSNEALQL KIKDFTLENG CYTILIKGKG DKYRAVMLKA FHIESLLKEW LIERELYPVK NDLLFCNQKG SALTQAYLYK QVERIINFAG LRREKNGAHM LRHSFATLLY QKRHDLILVQ EALGHASLNT SRIYTHFDKQ RLEEAASIWE EN // ID Y035_HELPY Reviewed; 97 AA. AC O24876; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 93. DE RecName: Full=Nucleoid-associated protein HP_0035 {ECO:0000255|HAMAP-Rule:MF_00274}; GN OrderedLocusNames=HP_0035; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS). RG Midwest center for structural genomics (MCSG); RT "Crystal structure of uncharacterized protein HP0035 from Helicobacter RT pylori."; RL Submitted (JUL-2011) to the PDB data bank. CC -!- FUNCTION: Binds to DNA and alters its conformation. May be CC involved in regulation of gene expression, nucleoid organization CC and DNA protection. {ECO:0000255|HAMAP-Rule:MF_00274}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00274}. CC -!- SUBCELLULAR LOCATION: Cytoplasm, nucleoid {ECO:0000255|HAMAP- CC Rule:MF_00274}. CC -!- SIMILARITY: Belongs to the YbaB/EbfC family. {ECO:0000255|HAMAP- CC Rule:MF_00274}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07104.1; -; Genomic_DNA. DR PIR; C64524; C64524. DR RefSeq; NP_206837.1; NC_000915.1. DR RefSeq; WP_000347915.1; NC_018939.1. DR PDB; 3F42; X-ray; 1.78 A; A/B=1-97. DR PDBsum; 3F42; -. DR ProteinModelPortal; O24876; -. DR DIP; DIP-3108N; -. DR MINT; MINT-185512; -. DR STRING; 85962.HP0035; -. DR PaxDb; O24876; -. DR PRIDE; O24876; -. DR EnsemblBacteria; AAD07104; AAD07104; HP_0035. DR GeneID; 899143; -. DR KEGG; heo:C694_00165; -. DR KEGG; hpy:HP0035; -. DR PATRIC; 20591269; VBIHelPyl33062_0036. DR eggNOG; ENOG41084FT; Bacteria. DR eggNOG; COG0718; LUCA. DR KO; K09747; -. DR OMA; EDKESMQ; -. DR OrthoDB; EOG6DVJWP; -. DR BioCyc; HPY:HP0035-MONOMER; -. DR EvolutionaryTrace; O24876; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043590; C:bacterial nucleoid; IEA:UniProtKB-HAMAP. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1310.10; -; 1. DR HAMAP; MF_00274; DNA_YbaB_EbfC; 1. DR InterPro; IPR004401; YbaB/EbfC. DR Pfam; PF02575; YbaB_DNA_bd; 1. DR PIRSF; PIRSF004555; UCP004555; 1. DR SUPFAM; SSF82607; SSF82607; 1. DR TIGRFAMs; TIGR00103; DNA_YbaB_EbfC; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; DNA-binding; KW Reference proteome. FT CHAIN 1 97 Nucleoid-associated protein HP_0035. FT /FTId=PRO_0000170399. FT HELIX 3 25 {ECO:0000244|PDB:3F42}. FT STRAND 28 33 {ECO:0000244|PDB:3F42}. FT HELIX 34 36 {ECO:0000244|PDB:3F42}. FT STRAND 38 43 {ECO:0000244|PDB:3F42}. FT STRAND 48 53 {ECO:0000244|PDB:3F42}. FT HELIX 55 59 {ECO:0000244|PDB:3F42}. FT HELIX 61 91 {ECO:0000244|PDB:3F42}. SQ SEQUENCE 97 AA; 10724 MW; 11060AFF9957357D CRC64; MDFSQLGGLL DGMKKEFSQL EEKNKDTIHT SKSGGGMVSV SFNGLGELVD LQIDDSLLED KEAMQIYLMS ALNDGYKAVE ENRKNLAFNM LGNFAKL // ID Y1070_HELPY Reviewed; 84 AA. AC O07680; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 11-NOV-2015, entry version 65. DE RecName: Full=Uncharacterized protein HP_1070; DE AltName: Full=ORFX; GN OrderedLocusNames=HP_1070; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RX PubMed=9244252; RA Beier D., Spohn G., Rappuoli R., Scarlato V.; RT "Identification and characterization of an operon of Helicobacter RT pylori that is involved in motility and stress adaptation."; RL J. Bacteriol. 179:4676-4683(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U97567; AAB66378.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08121.1; -; Genomic_DNA. DR PIR; F64653; F64653. DR RefSeq; NP_207861.1; NC_000915.1. DR RefSeq; WP_000881891.1; NC_018939.1. DR ProteinModelPortal; O07680; -. DR STRING; 85962.HP1070; -. DR PaxDb; O07680; -. DR PRIDE; O07680; -. DR EnsemblBacteria; AAD08121; AAD08121; HP_1070. DR GeneID; 899606; -. DR KEGG; heo:C694_05530; -. DR KEGG; hpy:HP1070; -. DR PATRIC; 20593479; VBIHelPyl33062_1119. DR OMA; KHSVCLK; -. DR OrthoDB; EOG632D70; -. DR BioCyc; HPY:HP1070-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 84 Uncharacterized protein HP_1070. FT /FTId=PRO_0000128696. FT VARIANT 2 2 L -> R (in strain: NCTC 11638). FT VARIANT 24 24 L -> F (in strain: NCTC 11638). FT VARIANT 41 41 Q -> K (in strain: NCTC 11638). FT VARIANT 49 49 S -> F (in strain: NCTC 11638). FT VARIANT 51 51 K -> E (in strain: NCTC 11638). FT VARIANT 60 61 LL -> IP (in strain: NCTC 11638). FT VARIANT 67 67 I -> M (in strain: NCTC 11638). FT VARIANT 74 74 E -> K (in strain: NCTC 11638). FT VARIANT 81 81 S -> F (in strain: NCTC 11638). SQ SEQUENCE 84 AA; 10006 MW; CF74D9C2C44F1281 CRC64; MLAYKQIFDK GLKPYYKHSV CLKLFFRFCF LKTHAYQQRY QAFALTLFSC KFFNACKIFL LAIGFKIVFI PILEAKLKRV SNAY // ID Y1423_HELPY Reviewed; 84 AA. AC O25966; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Uncharacterized protein HP_1423; GN OrderedLocusNames=HP_1423; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00182}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08465.1; -; Genomic_DNA. DR PIR; G64697; G64697. DR RefSeq; NP_208214.1; NC_000915.1. DR RefSeq; WP_001217155.1; NC_018939.1. DR PDB; 2K6P; NMR; -; A=1-84. DR PDBsum; 2K6P; -. DR ProteinModelPortal; O25966; -. DR DIP; DIP-3730N; -. DR IntAct; O25966; 7. DR MINT; MINT-160042; -. DR STRING; 85962.HP1423; -. DR PaxDb; O25966; -. DR PRIDE; O25966; -. DR EnsemblBacteria; AAD08465; AAD08465; HP_1423. DR GeneID; 899872; -. DR KEGG; heo:C694_07360; -. DR KEGG; hpy:HP1423; -. DR PATRIC; 20594245; VBIHelPyl33062_1492. DR eggNOG; ENOG410854I; Bacteria. DR eggNOG; COG1188; LUCA. DR OMA; NGSCAKP; -. DR OrthoDB; EOG64NB4B; -. DR BioCyc; HPY:HP1423-MONOMER; -. DR EvolutionaryTrace; O25966; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR Gene3D; 3.10.290.10; -; 1. DR InterPro; IPR025490; RNAbp_HP1423. DR InterPro; IPR002942; S4_RNA-bd. DR Pfam; PF01479; S4; 1. DR PIRSF; PIRSF038881; RNAbp_HP1423; 1. DR SMART; SM00363; S4; 1. DR PROSITE; PS50889; S4; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome; RNA-binding. FT CHAIN 1 84 Uncharacterized protein HP_1423. FT /FTId=PRO_0000201747. FT DOMAIN 1 64 S4 RNA-binding. {ECO:0000255|PROSITE- FT ProRule:PRU00182}. FT HELIX 3 6 {ECO:0000244|PDB:2K6P}. FT TURN 8 11 {ECO:0000244|PDB:2K6P}. FT TURN 22 26 {ECO:0000244|PDB:2K6P}. FT STRAND 46 49 {ECO:0000244|PDB:2K6P}. FT STRAND 56 60 {ECO:0000244|PDB:2K6P}. FT STRAND 71 73 {ECO:0000244|PDB:2K6P}. FT STRAND 76 80 {ECO:0000244|PDB:2K6P}. SQ SEQUENCE 84 AA; 9385 MW; 1CCCE2FE5982C00A CRC64; MRIDKFLQSV GLVKRRVLAT DMCNVGAVWL NGSCAKASKE VKAGDTISLH YLKGIEEYTI LQIPALKNVP RKDTHLYIAP KTKE // ID Y031_HELPY Reviewed; 137 AA. AC P64649; O24874; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=Universal stress protein HP_0031; DE Short=USP HP_0031; GN OrderedLocusNames=HP_0031; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the universal stress protein A family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07108.1; -; Genomic_DNA. DR PIR; G64523; G64523. DR RefSeq; NP_206833.1; NC_000915.1. DR RefSeq; WP_001023005.1; NC_018939.1. DR ProteinModelPortal; P64649; -. DR IntAct; P64649; 6. DR MINT; MINT-4061282; -. DR STRING; 85962.HP0031; -. DR PaxDb; P64649; -. DR PRIDE; P64649; -. DR EnsemblBacteria; AAD07108; AAD07108; HP_0031. DR GeneID; 899132; -. DR KEGG; heo:C694_00145; -. DR KEGG; hpy:HP0031; -. DR PATRIC; 20591261; VBIHelPyl33062_0032. DR eggNOG; ENOG4105PRZ; Bacteria. DR eggNOG; ENOG4111Y1M; LUCA. DR OMA; ECRRAIQ; -. DR OrthoDB; EOG6V4GFF; -. DR BioCyc; HPY:HP0031-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 137 Universal stress protein HP_0031. FT /FTId=PRO_0000128673. SQ SEQUENCE 137 AA; 15488 MW; D0B394FCADD8B816 CRC64; MNILFGISDT QECYNAIKFA VKLAHSLKEV RFTLLHVSME VFIYSESGMM DYGQTEALEE EKAKALLKQF EDAFKKENIE CESVLKSGDL IDVVLDMAKD YDLLLIGASE SNLLYRLFIS HQNSLVEQSS IPVVIAK // ID Y085_HELPY Reviewed; 62 AA. AC P64651; O24912; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=Uncharacterized protein HP_0085; GN OrderedLocusNames=HP_0085; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane CC protein {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07161.1; -; Genomic_DNA. DR PIR; E64530; E64530. DR RefSeq; NP_206885.1; NC_000915.1. DR RefSeq; WP_001168427.1; NC_018939.1. DR ProteinModelPortal; P64651; -. DR IntAct; P64651; 1. DR MINT; MINT-4069494; -. DR STRING; 85962.HP0085; -. DR PaxDb; P64651; -. DR PRIDE; P64651; -. DR EnsemblBacteria; AAD07161; AAD07161; HP_0085. DR GeneID; 900001; -. DR KEGG; heo:C694_00415; -. DR KEGG; hpy:HP0085; -. DR PATRIC; 20591379; VBIHelPyl33062_0090. DR OMA; QMSQQIK; -. DR OrthoDB; EOG6WMJ61; -. DR BioCyc; HPY:HP0085-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome; Membrane; Reference proteome; Transmembrane; KW Transmembrane helix. FT CHAIN 1 62 Uncharacterized protein HP_0085. FT /FTId=PRO_0000128675. FT TRANSMEM 17 37 Helical. {ECO:0000255}. SQ SEQUENCE 62 AA; 7245 MW; 0979E522C9D4D453 CRC64; MQKEQEAQEI AKKAVKIVFF LGLVVVLLMM INLYMLINQI NASAQMSHQI KKIEERLNQE QK // ID Y1234_HELPY Reviewed; 298 AA. AC O25832; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Uncharacterized transporter HP_1234; GN OrderedLocusNames=HP_1234; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the EamA transporter family. {ECO:0000305}. CC -!- SIMILARITY: Contains 2 EamA domains. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08277.1; -; Genomic_DNA. DR PIR; B64674; B64674. DR RefSeq; NP_208026.1; NC_000915.1. DR RefSeq; WP_001246343.1; NC_018939.1. DR ProteinModelPortal; O25832; -. DR DIP; DIP-3419N; -. DR IntAct; O25832; 1. DR MINT; MINT-161109; -. DR STRING; 85962.HP1234; -. DR TCDB; 2.A.7.28.9; the drug/metabolite transporter (dmt) superfamily. DR PaxDb; O25832; -. DR PRIDE; O25832; -. DR EnsemblBacteria; AAD08277; AAD08277; HP_1234. DR GeneID; 898766; -. DR KEGG; heo:C694_06370; -. DR KEGG; hpy:HP1234; -. DR PATRIC; 20593839; VBIHelPyl33062_1290. DR eggNOG; ENOG4105DJP; Bacteria. DR eggNOG; COG0697; LUCA. DR OMA; CMTRAYS; -. DR OrthoDB; EOG6K13QJ; -. DR BioCyc; HPY:HP1234-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR000620; EamA_dom. DR Pfam; PF00892; EamA; 2. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Repeat; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 298 Uncharacterized transporter HP_1234. FT /FTId=PRO_0000108193. FT TRANSMEM 5 25 Helical. {ECO:0000255}. FT TRANSMEM 36 56 Helical. {ECO:0000255}. FT TRANSMEM 76 96 Helical. {ECO:0000255}. FT TRANSMEM 97 117 Helical. {ECO:0000255}. FT TRANSMEM 124 144 Helical. {ECO:0000255}. FT TRANSMEM 147 167 Helical. {ECO:0000255}. FT TRANSMEM 181 201 Helical. {ECO:0000255}. FT TRANSMEM 216 236 Helical. {ECO:0000255}. FT TRANSMEM 244 264 Helical. {ECO:0000255}. FT TRANSMEM 272 292 Helical. {ECO:0000255}. FT DOMAIN 17 141 EamA 1. FT DOMAIN 183 288 EamA 2. SQ SEQUENCE 298 AA; 32885 MW; DD1853F4BE9A5E18 CRC64; MRNTILFGVS MILLANLCFG IMSAFVKITA DYFSPMENVF YRSITMTLLL LLIYPFKPYR LKSYKQGGFK KLAFRVVVGG LAMLAFFYNI EKISLATATA FSQCAPIYTV LLSPLLLKEK LKRSTLISAC IGIVGVVLIS DPSVENVGPV EIFMGILSGI FVSLAYITLR DLREYYDKQA VILAFAFGMS LLGLVGMFID IPFLSTGIHV PRKEDILWIS LIGISGTLGQ YFLTYAYMNA PAGIIAPIEY TRIVWGLLFG LYLGDTFLDL KSSLGVALIL CSGLLIALPA LLKELKKI // ID Y1588_HELPY Reviewed; 253 AA. AC O26107; DT 18-OCT-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 71. DE RecName: Full=UPF0174 protein HP_1588; GN OrderedLocusNames=HP_1588; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UPF0174 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08627.1; -; Genomic_DNA. DR PIR; D64718; D64718. DR RefSeq; NP_208379.1; NC_000915.1. DR RefSeq; WP_000323695.1; NC_018939.1. DR ProteinModelPortal; O26107; -. DR STRING; 85962.HP1588; -. DR PaxDb; O26107; -. DR PRIDE; O26107; -. DR EnsemblBacteria; AAD08627; AAD08627; HP_1588. DR GeneID; 899703; -. DR KEGG; heo:C694_08240; -. DR KEGG; hpy:HP1588; -. DR PATRIC; 20594611; VBIHelPyl33062_1673. DR eggNOG; ENOG4108QDQ; Bacteria. DR eggNOG; COG4735; LUCA. DR OMA; WAITALW; -. DR OrthoDB; EOG62K1V5; -. DR BioCyc; HPY:HP1588-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR025217; DUF3944. DR InterPro; IPR021150; Ubiq_cyt_c_chap/UPF0174. DR Pfam; PF13099; DUF3944; 1. DR Pfam; PF03981; Ubiq_cyt_C_chap; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 253 UPF0174 protein HP_1588. FT /FTId=PRO_0000216423. SQ SEQUENCE 253 AA; 28418 MW; 00E15A38B1A2036A CRC64; MAYKYDRDLE FLKQLESSDL LDLFEVLVFG KDGEKRHNEK LTSSIEYKRH GDDYAKYAER IAEELQYYGS NSFASFIKGE GVLYKEILCD VCDKLKVNYN KKTETTLIEQ NMLSKILERS LEEMDDEEVK EMCDELSIKN TDNLNRQALS AATLTLFKMG GFKSYQLAVI VANAVAKTIL GRGLSLAGNQ VLTRTLSFLT GPVGWIITGV WTAIDIAGPA YRVTIPACIV VATLRLKTQQ ANGDKKSLQI ESI // ID Y162_HELPY Reviewed; 240 AA. AC O24970; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Probable transcriptional regulatory protein HP_0162 {ECO:0000255|HAMAP-Rule:MF_00693}; GN OrderedLocusNames=HP_0162; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS). RA Kuzin A., Shen J., Keller J.P., Xiao R., Rost B., Montelione G., RA Hunt J.F.; RL Submitted (SEP-2002) to the PDB data bank. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00693}. CC -!- SIMILARITY: Belongs to the TACO1 family. {ECO:0000255|HAMAP- CC Rule:MF_00693}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07231.1; -; Genomic_DNA. DR PIR; B64540; B64540. DR RefSeq; NP_206961.1; NC_000915.1. DR RefSeq; WP_000532084.1; NC_018939.1. DR PDB; 1MHF; Model; -; A=1-240. DR PDB; 1MW7; X-ray; 2.00 A; A=1-240. DR PDBsum; 1MHF; -. DR PDBsum; 1MW7; -. DR ProteinModelPortal; O24970; -. DR SMR; O24970; 21-240. DR DIP; DIP-3628N; -. DR IntAct; O24970; 4. DR MINT; MINT-183344; -. DR STRING; 85962.HP0162; -. DR PaxDb; O24970; -. DR PRIDE; O24970; -. DR EnsemblBacteria; AAD07231; AAD07231; HP_0162. DR GeneID; 899999; -. DR KEGG; heo:C694_00805; -. DR KEGG; hpy:HP0162; -. DR PATRIC; 20591545; VBIHelPyl33062_0172. DR eggNOG; ENOG4105CDY; Bacteria. DR eggNOG; COG0217; LUCA. DR OMA; MKRWGNM; -. DR OrthoDB; EOG6HJ29R; -. DR BioCyc; HPY:HP0162-MONOMER; -. DR EvolutionaryTrace; O24970; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.200; -; 1. DR Gene3D; 3.30.1270.10; -; 2. DR Gene3D; 3.30.70.980; -; 1. DR HAMAP; MF_00693; Transcrip_reg_TACO1; 1. DR InterPro; IPR017856; Integrase_Zn-bd_dom-like_N. DR InterPro; IPR002876; Transcrip_reg_TACO1-like. DR InterPro; IPR026563; Transcrip_reg_TACO1-like_dom2. DR InterPro; IPR026564; Transcrip_reg_TACO1-like_dom3. DR InterPro; IPR029072; YebC-like. DR PANTHER; PTHR12532; PTHR12532; 1. DR Pfam; PF01709; Transcrip_reg; 1. DR SUPFAM; SSF75625; SSF75625; 1. DR TIGRFAMs; TIGR01033; TIGR01033; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Cytoplasm; DNA-binding; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 240 Probable transcriptional regulatory FT protein HP_0162. FT /FTId=PRO_0000175820. FT HELIX 23 35 {ECO:0000244|PDB:1MW7}. FT HELIX 41 43 {ECO:0000244|PDB:1MW7}. FT HELIX 45 57 {ECO:0000244|PDB:1MW7}. FT HELIX 61 70 {ECO:0000244|PDB:1MW7}. FT STRAND 79 87 {ECO:0000244|PDB:1MW7}. FT TURN 88 90 {ECO:0000244|PDB:1MW7}. FT STRAND 91 100 {ECO:0000244|PDB:1MW7}. FT HELIX 102 113 {ECO:0000244|PDB:1MW7}. FT STRAND 120 122 {ECO:0000244|PDB:1MW7}. FT TURN 124 129 {ECO:0000244|PDB:1MW7}. FT STRAND 130 140 {ECO:0000244|PDB:1MW7}. FT HELIX 141 146 {ECO:0000244|PDB:1MW7}. FT HELIX 151 158 {ECO:0000244|PDB:1MW7}. FT HELIX 159 161 {ECO:0000244|PDB:1MW7}. FT STRAND 163 169 {ECO:0000244|PDB:1MW7}. FT STRAND 172 178 {ECO:0000244|PDB:1MW7}. FT HELIX 179 181 {ECO:0000244|PDB:1MW7}. FT HELIX 182 191 {ECO:0000244|PDB:1MW7}. FT STRAND 197 207 {ECO:0000244|PDB:1MW7}. FT HELIX 213 227 {ECO:0000244|PDB:1MW7}. FT STRAND 232 239 {ECO:0000244|PDB:1MW7}. SQ SEQUENCE 240 AA; 27127 MW; 6BB7E0DC87B35F2E CRC64; MGRAFEYRRA AKEKRWDKMS KVFPKLAKAI TLAAKDGGSE PDTNAKLRTA ILNAKAQNMP KDNIDAAIKR ASSKEGNLSE ITYEGKANFG VLIIMECMTD NPTRTIANLK SYFNKTQGAS IVPNGSLEFM FNRKSVFECL KNEVENLKLS LEDLEFALID YGLEELEEVE DKIIIRGDYN SFKLLNEGFE SLKLPILKAS LQRIATTPIE LNDEQMELTE KLLDRIEDDD DVVALYTNIE // ID Y1484_HELPY Reviewed; 148 AA. AC O26018; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=UPF0093 membrane protein HP_1484; GN OrderedLocusNames=HP_1484; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the UPF0093 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08519.1; -; Genomic_DNA. DR PIR; D64705; D64705. DR RefSeq; NP_208275.1; NC_000915.1. DR RefSeq; WP_000506456.1; NC_018939.1. DR ProteinModelPortal; O26018; -. DR IntAct; O26018; 1. DR STRING; 85962.HP1484; -. DR PaxDb; O26018; -. DR PRIDE; O26018; -. DR EnsemblBacteria; AAD08519; AAD08519; HP_1484. DR GeneID; 899808; -. DR KEGG; heo:C694_07685; -. DR KEGG; hpy:HP1484; -. DR PATRIC; 20594379; VBIHelPyl33062_1558. DR eggNOG; ENOG4108YXA; Bacteria. DR eggNOG; COG1981; LUCA. DR KO; K08973; -. DR OMA; QGWMHAK; -. DR OrthoDB; EOG67DPNK; -. DR BioCyc; HPY:HP1484-MONOMER; -. DR BioCyc; RETL1328306-WGS:GSTH-4238-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR014351; CHP00701. DR InterPro; IPR005265; UPF0093. DR Pfam; PF03653; UPF0093; 1. DR PIRSF; PIRSF004638; UCP004638; 1. DR TIGRFAMs; TIGR00701; TIGR00701; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 148 UPF0093 membrane protein HP_1484. FT /FTId=PRO_0000217658. FT TRANSMEM 7 27 Helical. {ECO:0000255}. FT TRANSMEM 58 78 Helical. {ECO:0000255}. FT TRANSMEM 128 148 Helical. {ECO:0000255}. SQ SEQUENCE 148 AA; 17159 MW; B3A4B71CBE0243E6 CRC64; MGFLNGYFLW VKAFHVIAVI SWMAALFYLP RLFVYHAENA HKKEFVGVVQ IQEKKLYSFI ASPAMGFTLI TGILMLLIEP TLFKSGGWLH AKLALVVLLL AYHFYCKKCM RELEKDPTRR NARFYRVFNE APTILMILIV ILVVVKPF // ID Y1587_HELPY Reviewed; 209 AA. AC O26106; DT 18-OCT-2001, integrated into UniProtKB/Swiss-Prot. DT 18-OCT-2001, sequence version 2. DT 11-NOV-2015, entry version 61. DE RecName: Full=UPF0174 protein HP_1587; GN OrderedLocusNames=HP_1587; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UPF0174 family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD08626.1; Type=Frameshift; Positions=160; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08626.1; ALT_FRAME; Genomic_DNA. DR PIR; C64718; C64718. DR IntAct; O26106; 1. DR STRING; 85962.HP1587; -. DR PaxDb; O26106; -. DR EnsemblBacteria; AAD08626; AAD08626; HP_1587. DR PATRIC; 20594605; VBIHelPyl33062_1670. DR eggNOG; COG4735; LUCA. DR OMA; HDYAKYP; -. DR OrthoDB; EOG62K1V5; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR021150; Ubiq_cyt_c_chap/UPF0174. DR Pfam; PF03981; Ubiq_cyt_C_chap; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 209 UPF0174 protein HP_1587. FT /FTId=PRO_0000216421. SQ SEQUENCE 209 AA; 23070 MW; F98D3FB8F3F62323 CRC64; MNEDLTNSTE YKRYGHDYAK YPRRIAEELQ HYGGNSFANF FRDEGVLYKE ILCDACDHLK VNYNEESATS LIEQNMLSKL LKDSLEKMSR REIKELCNEL GMTNIDKVIG ENKQVLIAST LTLFKAGGSH SYALAVSVAD AMVRQTLGHX ACYVVGKVAL KKTLGVLAGP IGWVITGALV SINLAGPAYR VTVPACVLIA TLRLKLKAK // ID Y175_HELPY Reviewed; 299 AA. AC P56112; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 81. DE RecName: Full=Putative peptidyl-prolyl cis-trans isomerase HP_0175; DE Short=PPIase HP_0175; DE EC=5.2.1.8; DE AltName: Full=Rotamase HP_0175; DE Flags: Precursor; GN OrderedLocusNames=HP_0175; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Peptidylproline (omega=180) = peptidylproline CC (omega=0). CC -!- SIMILARITY: Contains 1 PpiC domain. {ECO:0000255|PROSITE- CC ProRule:PRU00278}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07245.1; -; Genomic_DNA. DR PIR; G64541; G64541. DR RefSeq; NP_206974.1; NC_000915.1. DR RefSeq; WP_000739470.1; NC_018939.1. DR PDB; 5EZ1; X-ray; 2.40 A; A/B=33-299. DR PDBsum; 5EZ1; -. DR ProteinModelPortal; P56112; -. DR DIP; DIP-3058N; -. DR IntAct; P56112; 2. DR MINT; MINT-164726; -. DR STRING; 85962.HP0175; -. DR PaxDb; P56112; -. DR PRIDE; P56112; -. DR EnsemblBacteria; AAD07245; AAD07245; HP_0175. DR GeneID; 899149; -. DR KEGG; heo:C694_00870; -. DR KEGG; hpy:HP0175; -. DR PATRIC; 20591571; VBIHelPyl33062_0185. DR eggNOG; ENOG4105EIN; Bacteria. DR eggNOG; COG0760; LUCA. DR KO; K01802; -. DR OMA; QERMNQR; -. DR OrthoDB; EOG690MCF; -. DR BioCyc; HPY:HP0175-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW. DR InterPro; IPR000297; PPIase_PpiC. DR InterPro; IPR023058; PPIase_PpiC_CS. DR InterPro; IPR027304; Trigger_fact/SurA_dom. DR Pfam; PF00639; Rotamase; 1. DR SUPFAM; SSF109998; SSF109998; 1. DR PROSITE; PS01096; PPIC_PPIASE_1; 1. DR PROSITE; PS50198; PPIC_PPIASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Isomerase; Reference proteome; KW Rotamase; Signal. FT SIGNAL 1 21 {ECO:0000255}. FT CHAIN 22 299 Putative peptidyl-prolyl cis-trans FT isomerase HP_0175. FT /FTId=PRO_0000025547. FT DOMAIN 154 253 PpiC. {ECO:0000255|PROSITE- FT ProRule:PRU00278}. SQ SEQUENCE 299 AA; 34031 MW; E65F3F2F94B11F5A CRC64; MKKNILNLAL VGALSTSFLM AKPAHNANNA THNTKKTTDS SAGVLATVDG RPITKSDFDM IKQRNPNFDF DKLKEKEKEA LIDQAIRTAL VENEAKTEKL DSTPEFKAMM EAVKKQALVE FWAKKQAEEV KKVQIPEKEM QDFYNANKDQ LFVKQEAHAR HILVKTEDEA KRIISEIDKQ PKAKKEAKFI ELANRDTIDP NSKNAQNGGD LGKFQKNQMA PDFSKAAFAL TPGDYTKTPV KTEFGYHIIY LISKDSPVTY TYEQAKPTIK GMLQEKLFQE RMNQRIEELR KHAKIVINK // ID Y1331_HELPY Reviewed; 228 AA. AC O25889; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 84. DE RecName: Full=Uncharacterized membrane protein HP_1331; GN OrderedLocusNames=HP_1331; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AzlC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08372.1; -; Genomic_DNA. DR PIR; C64686; C64686. DR RefSeq; NP_208123.1; NC_000915.1. DR RefSeq; WP_000544243.1; NC_018939.1. DR ProteinModelPortal; O25889; -. DR STRING; 85962.HP1331; -. DR PaxDb; O25889; -. DR PRIDE; O25889; -. DR EnsemblBacteria; AAD08372; AAD08372; HP_1331. DR GeneID; 898822; -. DR KEGG; heo:C694_06870; -. DR KEGG; hpy:HP1331; -. DR PATRIC; 20594043; VBIHelPyl33062_1392. DR eggNOG; ENOG4108UMN; Bacteria. DR eggNOG; COG1296; LUCA. DR OMA; FIVLFME; -. DR OrthoDB; EOG6K9QNJ; -. DR BioCyc; HPY:HP1331-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR004471; Brnchd-chn_aa_trnsp_AzlC. DR InterPro; IPR011606; Brnchd-chn_aa_trnsp_permease. DR Pfam; PF03591; AzlC; 1. DR TIGRFAMs; TIGR00346; azlC; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 228 Uncharacterized membrane protein HP_1331. FT /FTId=PRO_0000111783. FT TRANSMEM 14 34 Helical. {ECO:0000255}. FT TRANSMEM 42 62 Helical. {ECO:0000255}. FT TRANSMEM 130 150 Helical. {ECO:0000255}. FT TRANSMEM 156 176 Helical. {ECO:0000255}. FT TRANSMEM 192 212 Helical. {ECO:0000255}. SQ SEQUENCE 228 AA; 25854 MW; DE8EFAB6E8376130 CRC64; MHEFLKAFKD AFPHTISILL GYLLMGMTFG MLLVQQGYDY KVALFMSLFI YAGAVQFVAI TLLSAQASLM NVVIVSLLVN ARQTCYALSM LDRFKNTKWR LPYLAHALTD ETFALLNLYA PKEGVSEKDF IFSISLLNHS YWIFGSLVGS LVGSHFSFDT QGMEFVMTAI FIVLFMEQYK RTTNHKNAWL GIVIAVVCLA LFGTEYFLLI ALVLMVLALM LFRKQLEC // ID Y135_HELPY Reviewed; 44 AA. AC P64655; O24948; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 43. DE RecName: Full=Uncharacterized protein HP_0135; DE Flags: Precursor; GN OrderedLocusNames=HP_0135; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07212.1; -; Genomic_DNA. DR PIR; G64536; G64536. DR RefSeq; NP_206935.1; NC_000915.1. DR RefSeq; WP_001222899.1; NC_018939.1. DR ProteinModelPortal; P64655; -. DR STRING; 85962.HP0135; -. DR PaxDb; P64655; -. DR PRIDE; P64655; -. DR EnsemblBacteria; AAD07212; AAD07212; HP_0135. DR GeneID; 899130; -. DR KEGG; heo:C694_00665; -. DR KEGG; hpy:HP0135; -. DR PATRIC; 20591487; VBIHelPyl33062_0143. DR OrthoDB; EOG6RNQMW; -. DR BioCyc; HPY:HP0135-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Signal. FT SIGNAL 1 16 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 17 44 Uncharacterized protein HP_0135. FT /FTId=PRO_0000013980. SQ SEQUENCE 44 AA; 5023 MW; 868B773CB3807A7A CRC64; MRISLLAVIL ALLFVACHET KKQILQNEAD STPSEKTIWQ PEQK // ID Y1491_HELPY Reviewed; 533 AA. AC O26024; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Putative phosphate permease HP_1491; GN OrderedLocusNames=HP_1491; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Potential transporter for phosphate. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the inorganic phosphate transporter (PiT) CC (TC 2.A.20) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08533.1; -; Genomic_DNA. DR PIR; C64706; C64706. DR RefSeq; NP_208282.1; NC_000915.1. DR RefSeq; WP_000403632.1; NC_018939.1. DR ProteinModelPortal; O26024; -. DR IntAct; O26024; 3. DR STRING; 85962.HP1491; -. DR TCDB; 2.A.20.2.9; the inorganic phosphate transporter (pit) family. DR PaxDb; O26024; -. DR PRIDE; O26024; -. DR EnsemblBacteria; AAD08533; AAD08533; HP_1491. DR GeneID; 899801; -. DR KEGG; heo:C694_07725; -. DR KEGG; hpy:HP1491; -. DR PATRIC; 20594393; VBIHelPyl33062_1565. DR eggNOG; ENOG4105CJ3; Bacteria. DR eggNOG; COG0306; LUCA. DR KO; K03306; -. DR OMA; FEIQLAC; -. DR OrthoDB; EOG6NWBS7; -. DR BioCyc; HPY:HP1491-MONOMER; -. DR BioCyc; RETL1328306-WGS:GSTH-814-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005315; F:inorganic phosphate transmembrane transporter activity; IEA:InterPro. DR GO; GO:0006817; P:phosphate ion transport; IEA:UniProtKB-KW. DR InterPro; IPR001204; Phos_transporter. DR PANTHER; PTHR11101; PTHR11101; 2. DR Pfam; PF01384; PHO4; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Phosphate transport; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 533 Putative phosphate permease HP_1491. FT /FTId=PRO_0000080799. FT TRANSMEM 23 43 Helical. {ECO:0000255}. FT TRANSMEM 47 67 Helical. {ECO:0000255}. FT TRANSMEM 81 101 Helical. {ECO:0000255}. FT TRANSMEM 129 149 Helical. {ECO:0000255}. FT TRANSMEM 156 176 Helical. {ECO:0000255}. FT TRANSMEM 182 202 Helical. {ECO:0000255}. FT TRANSMEM 221 241 Helical. {ECO:0000255}. FT TRANSMEM 248 268 Helical. {ECO:0000255}. FT TRANSMEM 286 306 Helical. {ECO:0000255}. FT TRANSMEM 338 358 Helical. {ECO:0000255}. FT TRANSMEM 372 392 Helical. {ECO:0000255}. FT TRANSMEM 509 529 Helical. {ECO:0000255}. SQ SEQUENCE 533 AA; 57277 MW; 9B8613D248D56ECC CRC64; MEIKNIKEFE KASKKLQKDT LKIALALLFL IGAALLALIF GQANSKGLLL IFAAVIGGYM AMNIGANDVS NNVGPAVGSK AISMGGAILI AAICEMLGAI IAGGEVVSTI KGRIVSPEFI NDAHIFINVM LASLLSGALW LHVATLIGAP VSTSHSVVGG IMGAGMAAAG MVAVNWHFLS GIVASWVISP LMGALIAMFF LMLIKKTIAY KEDKKSAALK VVPYLVALMS LTFSWYLIVK VLKRLYALNF EIQLACGCIL ALLIFILFKR FVLKKAPQLE NSHESINELF NVPLIFAAAL LSFAHGANDV ANAIGPLAAI SQTLEDANSP IGNTLSSVPL WIMVVGAAGI ALGLSLYGPK LIKTVGSEIT ELDKMQAFCI ALSAVITVLL ASQLGLPVSS THIVVGAVFG VGFLRERLRE QSRRRFARIR DNIVAAHFGE DLEEIEGFLE RFDKANLKEK SLMLESLKKS KNTAIALELK KKEKKSLKKV YKEEVIKRSI LKKIVTAWLV TVPVSALLGA LLFVALGFIE KYF // ID Y258_HELPY Reviewed; 348 AA. AC P56136; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-MAY-2016, entry version 114. DE RecName: Full=Putative zinc metalloprotease HP_0258; DE EC=3.4.24.-; GN OrderedLocusNames=HP_0258; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000305}; CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000250}; Multi- CC pass membrane protein {ECO:0000250}. CC -!- SIMILARITY: Belongs to the peptidase M50B family. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 PDZ (DHR) domain. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07326.1; -; Genomic_DNA. DR PIR; B64552; B64552. DR RefSeq; NP_207056.1; NC_000915.1. DR RefSeq; WP_000971264.1; NC_018939.1. DR RefSeq; WP_001863029.1; NC_000915.1. DR ProteinModelPortal; P56136; -. DR STRING; 85962.HP0258; -. DR MEROPS; M50.004; -. DR PaxDb; P56136; -. DR PRIDE; P56136; -. DR EnsemblBacteria; AAD07326; AAD07326; HP_0258. DR GeneID; 899060; -. DR KEGG; heo:C694_01305; -. DR KEGG; hpy:HP0258; -. DR PATRIC; 20591743; VBIHelPyl33062_0269. DR eggNOG; ENOG4105DZP; Bacteria. DR eggNOG; COG0750; LUCA. DR KO; K11749; -. DR OMA; WSTRRPN; -. DR OrthoDB; EOG66F07W; -. DR BioCyc; HPY:HP0258-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001478; PDZ. DR InterPro; IPR004387; Pept_M50_Zn. DR InterPro; IPR008915; Peptidase_M50. DR Pfam; PF02163; Peptidase_M50; 1. DR SUPFAM; SSF50156; SSF50156; 1. DR TIGRFAMs; TIGR00054; TIGR00054; 2. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Hydrolase; KW Membrane; Metal-binding; Metalloprotease; Protease; KW Reference proteome; Transmembrane; Transmembrane helix; Zinc. FT CHAIN 1 348 Putative zinc metalloprotease HP_0258. FT /FTId=PRO_0000088443. FT TRANSMEM 43 63 Helical. {ECO:0000255}. FT TRANSMEM 93 113 Helical. {ECO:0000255}. FT TRANSMEM 247 267 Helical. {ECO:0000255}. FT TRANSMEM 275 295 Helical. {ECO:0000255}. FT TRANSMEM 324 344 Helical. {ECO:0000255}. FT DOMAIN 106 175 PDZ. FT ACT_SITE 17 17 {ECO:0000255}. FT METAL 16 16 Zinc; catalytic. {ECO:0000255}. FT METAL 20 20 Zinc; catalytic. {ECO:0000255}. SQ SEQUENCE 348 AA; 38464 MW; 3F849E05B1A92DA0 CRC64; MFIVAVLMLA FLIFVHELGH FTIARICGVK VEVFSIGFGK KLCFFKLFGT QFALSLIPLG GYVKLKGMDK EENGMNETTD DSYAQKSPFQ KLWILFGGAF FNFLFAILVY FFLALGGEKV LLPVIGDLDK NALEAGLLKG DKILSINHKK IASFREIRSV VARARGELVL EIERNHQVLE KRLTPKIVAV ISDSNDPNEM IRYKAIGIKP DMQKMGVVSY SLFQAFEKAL SRFKEGVVLI VDSLRRLIMG SSSVKELSGV VGIVGALSHA NSLSMLLLFG AFLSINLGIL NLLPIPALDG AQMLGVVFKN IFHITLPTPI QNALWLAGVG FLVFIMFLGL FNDLTRLL // ID Y122_HELPY Reviewed; 43 AA. AC P64653; O24940; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 39. DE RecName: Full=Uncharacterized protein HP_0122; DE Flags: Precursor; GN OrderedLocusNames=HP_0122; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07200.1; -; Genomic_DNA. DR PIR; B64535; B64535. DR RefSeq; NP_206922.1; NC_000915.1. DR RefSeq; WP_001871589.1; NC_000915.1. DR ProteinModelPortal; P64653; -. DR STRING; 85962.HP0122; -. DR PaxDb; P64653; -. DR PRIDE; P64653; -. DR EnsemblBacteria; AAD07200; AAD07200; HP_0122. DR GeneID; 899126; -. DR KEGG; hpy:HP0122; -. DR PATRIC; 20591461; VBIHelPyl33062_0130. DR OrthoDB; EOG67T5RD; -. DR BioCyc; HPY:HP0122-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Signal. FT SIGNAL 1 17 {ECO:0000255|PROSITE-ProRule:PRU00303}. FT CHAIN 18 43 Uncharacterized protein HP_0122. FT /FTId=PRO_0000013978. SQ SEQUENCE 43 AA; 4915 MW; 1C6AABF0C08C8FB5 CRC64; MYRRLLLNLF CMVFLQACLK PMSDPKAEKV DSQVQCGFGS KDC // ID Y1240_HELPY Reviewed; 190 AA. AC O25838; DT 23-JAN-2002, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Maf-like protein HP_1240 {ECO:0000255|HAMAP-Rule:MF_00528}; GN OrderedLocusNames=HP_1240; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00528}. CC -!- SIMILARITY: Belongs to the maf family. {ECO:0000255|HAMAP- CC Rule:MF_00528}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08284.1; -; Genomic_DNA. DR PIR; H64674; H64674. DR RefSeq; NP_208032.1; NC_000915.1. DR RefSeq; WP_000420308.1; NC_018939.1. DR ProteinModelPortal; O25838; -. DR STRING; 85962.HP1240; -. DR PaxDb; O25838; -. DR PRIDE; O25838; -. DR EnsemblBacteria; AAD08284; AAD08284; HP_1240. DR GeneID; 898981; -. DR KEGG; heo:C694_06395; -. DR KEGG; hpy:HP1240; -. DR PATRIC; 20593851; VBIHelPyl33062_1296. DR eggNOG; ENOG4107YJQ; Bacteria. DR eggNOG; COG0424; LUCA. DR KO; K06287; -. DR OMA; VYLACKG; -. DR OrthoDB; EOG6QK4T6; -. DR BioCyc; HPY:HP1240-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR Gene3D; 3.90.950.10; -; 1. DR HAMAP; MF_00528; Maf; 1. DR InterPro; IPR029001; ITPase-like_fam. DR InterPro; IPR003697; Maf. DR Pfam; PF02545; Maf; 1. DR PIRSF; PIRSF006305; Maf; 1. DR SUPFAM; SSF52972; SSF52972; 1. DR TIGRFAMs; TIGR00172; maf; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Reference proteome. FT CHAIN 1 190 Maf-like protein HP_1240. FT /FTId=PRO_0000123024. FT ACT_SITE 32 32 {ECO:0000255|HAMAP-Rule:MF_00528}. SQ SEQUENCE 190 AA; 21158 MW; 19B12F5627C1582B CRC64; MELILGSQSS TRANLLKEHG IKFEQKALYF DEESLKTTDP REFVYLACKG KLEKAKELLA NNCAIVVADS VVSVGNRMQR KAKNKQEALE FLKRQNGHEI EVLTCSALIS PVLEWLDLSV FRARLKAFDP SEIEKYLESG LWQESAGCVR LEDFHKPYIK SSSENLSVGL GLNVEGLLGA LKLGAKLSSL // ID Y1429_HELPY Reviewed; 329 AA. AC O25971; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Uncharacterized protein HP_1429; GN OrderedLocusNames=HP_1429; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the SIS family. GutQ/KpsF subfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 2 CBS domains. {ECO:0000255|PROSITE- CC ProRule:PRU00703}. CC -!- SIMILARITY: Contains 1 SIS domain. {ECO:0000255|PROSITE- CC ProRule:PRU00797}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08468.1; -; Genomic_DNA. DR PIR; E64698; E64698. DR RefSeq; NP_208220.1; NC_000915.1. DR RefSeq; WP_001121932.1; NC_018939.1. DR ProteinModelPortal; O25971; -. DR STRING; 85962.HP1429; -. DR PaxDb; O25971; -. DR PRIDE; O25971; -. DR EnsemblBacteria; AAD08468; AAD08468; HP_1429. DR GeneID; 899866; -. DR KEGG; heo:C694_07390; -. DR KEGG; hpy:HP1429; -. DR PATRIC; 20594257; VBIHelPyl33062_1498. DR eggNOG; ENOG4105C2X; Bacteria. DR eggNOG; COG0517; LUCA. DR eggNOG; COG0794; LUCA. DR KO; K06041; -. DR OMA; LMACLMR; -. DR OrthoDB; EOG6RFZWS; -. DR BioCyc; HPY:HP1429-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro. DR GO; GO:0016853; F:isomerase activity; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR004800; KdsD/KpsF-type. DR InterPro; IPR001347; SIS. DR Pfam; PF00571; CBS; 2. DR Pfam; PF01380; SIS; 1. DR PIRSF; PIRSF004692; KdsD_KpsF; 1. DR SMART; SM00116; CBS; 1. DR TIGRFAMs; TIGR00393; kpsF; 1. DR PROSITE; PS51371; CBS; 2. DR PROSITE; PS51464; SIS; 1. PE 3: Inferred from homology; KW ATP-binding; CBS domain; Complete proteome; Nucleotide-binding; KW Reference proteome; Repeat. FT CHAIN 1 329 Uncharacterized protein HP_1429. FT /FTId=PRO_0000136587. FT DOMAIN 38 184 SIS. {ECO:0000255|PROSITE- FT ProRule:PRU00797}. FT DOMAIN 211 267 CBS 1. {ECO:0000255|PROSITE- FT ProRule:PRU00703}. FT DOMAIN 270 329 CBS 2. {ECO:0000255|PROSITE- FT ProRule:PRU00703}. FT NP_BIND 56 61 ATP. {ECO:0000255}. SQ SEQUENCE 329 AA; 35784 MW; E93CDDB1D4E8056F CRC64; MPILFDCNAI ASQVLKDEAS ALLESVGQFQ KPNDLEAIVK LILKSQENGG KLVIVGVGKS ALVAQKIVAS MLSTGNRSAF LHPTEAMHGD LGMVEKNDVV LMISYGGESL ELLNLVSHLK RLSHKIITFT KSPNSSLSKL GDYYLSLKIQ KEACPINTAP TTSTTLTLAL GDVLMACLMR AKNFSQEDFA SFHPGGLLGK KLFVKVKDLL QTTNLPLIAP STSFKDALIE MSEKRLGSAI LVNEANELVG VLSDGDVRRA LLKGVSLKSE VRHFATLKPK SFKNLDALLL EALEFLERHK IQLLVCVDDH NKVLGVLHLH QLLELGLKA // ID Y1531_HELPY Reviewed; 79 AA. AC P64665; O26059; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Uncharacterized protein HP_1531; GN OrderedLocusNames=HP_1531; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08575.1; -; Genomic_DNA. DR PIR; C64711; C64711. DR RefSeq; NP_208321.1; NC_000915.1. DR RefSeq; WP_000461837.1; NC_018939.1. DR PDB; 1ZKE; X-ray; 1.60 A; A/B/C/D/E/F=1-79. DR PDBsum; 1ZKE; -. DR ProteinModelPortal; P64665; -. DR SMR; P64665; 1-79. DR STRING; 85962.HP1531; -. DR PaxDb; P64665; -. DR PRIDE; P64665; -. DR EnsemblBacteria; AAD08575; AAD08575; HP_1531. DR GeneID; 899759; -. DR KEGG; heo:C694_07930; -. DR KEGG; hpy:HP1531; -. DR PATRIC; 20594483; VBIHelPyl33062_1609. DR eggNOG; ENOG4106XI8; Bacteria. DR eggNOG; ENOG410YSW0; LUCA. DR OMA; VDYIMIK; -. DR OrthoDB; EOG6XSZZV; -. DR BioCyc; HPY:HP1531-MONOMER; -. DR EvolutionaryTrace; P64665; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR019469; DUF2443. DR Pfam; PF10398; DUF2443; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome. FT CHAIN 1 79 Uncharacterized protein HP_1531. FT /FTId=PRO_0000128700. FT HELIX 2 26 {ECO:0000244|PDB:1ZKE}. FT HELIX 30 37 {ECO:0000244|PDB:1ZKE}. FT HELIX 49 51 {ECO:0000244|PDB:1ZKE}. FT HELIX 52 73 {ECO:0000244|PDB:1ZKE}. FT HELIX 74 76 {ECO:0000244|PDB:1ZKE}. SQ SEQUENCE 79 AA; 9099 MW; 42B7C604D0B506D7 CRC64; MFEKIRKILA DIEDSQNEIE MLLKLANLSL GDFIEIKRGS MDMPKGVNEA FFTQLSEEVE RLKELINALN KIKKGLLVF // ID Y1551_HELPY Reviewed; 127 AA. AC O26075; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 89. DE RecName: Full=UPF0092 membrane protein HP_1551; GN OrderedLocusNames=HP_1551; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the UPF0092 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08591.1; -; Genomic_DNA. DR PIR; G64713; G64713. DR RefSeq; NP_208342.1; NC_000915.1. DR RefSeq; WP_000529779.1; NC_018939.1. DR ProteinModelPortal; O26075; -. DR STRING; 85962.HP1551; -. DR PaxDb; O26075; -. DR PRIDE; O26075; -. DR EnsemblBacteria; AAD08591; AAD08591; HP_1551. DR GeneID; 899740; -. DR KEGG; heo:C694_08035; -. DR KEGG; hpy:HP1551; -. DR PATRIC; 20594525; VBIHelPyl33062_1630. DR eggNOG; ENOG4105VIE; Bacteria. DR eggNOG; COG1862; LUCA. DR KO; K03210; -. DR OMA; QKKHKEM; -. DR OrthoDB; EOG6WQDDS; -. DR BioCyc; HPY:HP1551-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR003849; Preprotein_translocase_YajC. DR Pfam; PF02699; YajC; 1. DR PRINTS; PR01853; YAJCTRNLCASE. DR SMART; SM01323; YajC; 1. DR TIGRFAMs; TIGR00739; yajC; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 127 UPF0092 membrane protein HP_1551. FT /FTId=PRO_0000097032. FT TRANSMEM 6 26 Helical. {ECO:0000255}. SQ SEQUENCE 127 AA; 14392 MW; F559293A04D5EE40 CRC64; MGQIKDILTT LLPLVVLFLI FYFLIVRPQR QQQKKHKEMI ESLTKGDKIV TQGGLIVEVL KAEANFFSVK LNDDTTAKLS KNYVAFKLDE LDQFGLAEPI VIQQGREEIS AKLSGAKTLK QRQITTE // ID Y274_HELPY Reviewed; 132 AA. AC P56132; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 70. DE RecName: Full=Uncharacterized protein HP_0274; GN OrderedLocusNames=HP_0274; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: To M.jannaschii MJ0661. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07338.1; -; Genomic_DNA. DR PIR; B64554; B64554. DR RefSeq; NP_207072.1; NC_000915.1. DR RefSeq; WP_001150530.1; NC_018939.1. DR ProteinModelPortal; P56132; -. DR DIP; DIP-3321N; -. DR IntAct; P56132; 13. DR MINT; MINT-162375; -. DR STRING; 85962.HP0274; -. DR PaxDb; P56132; -. DR PRIDE; P56132; -. DR EnsemblBacteria; AAD07338; AAD07338; HP_0274. DR GeneID; 899190; -. DR KEGG; heo:C694_01385; -. DR KEGG; hpy:HP0274; -. DR PATRIC; 20591775; VBIHelPyl33062_0285. DR eggNOG; ENOG4105QTX; Bacteria. DR eggNOG; COG0727; LUCA. DR KO; K06940; -. DR OMA; TFPFWDY; -. DR OrthoDB; EOG6RZB4F; -. DR BioCyc; HPY:HP0274-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005358; Puta_zinc/iron-chelating_dom. DR Pfam; PF03692; CxxCxxCC; 1. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 132 Uncharacterized protein HP_0274. FT /FTId=PRO_0000128681. SQ SEQUENCE 132 AA; 15176 MW; AD4D69BF72F48AC9 CRC64; MQDFDFSFNP KACEGCGAKC CVGESGYIFL NIQEMQQISA FLKLELEEFS QKYVKKVGYK FSLLEKDAKE LGLACVFLDL ETKKCQIYSV RPKQCQTFPF WEGVKTFSKE QKEAFCQSCP GITQKTKETK VR // ID Y117_HELPY Reviewed; 308 AA. AC P56080; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 79. DE RecName: Full=UPF0026 protein HP_0117; GN OrderedLocusNames=HP_0117; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000305}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000305}; CC -!- SIMILARITY: Belongs to the UPF0026 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07185.1; -; Genomic_DNA. DR PIR; E64534; E64534. DR RefSeq; NP_206917.1; NC_000915.1. DR RefSeq; WP_001040794.1; NC_018939.1. DR DIP; DIP-3297N; -. DR IntAct; P56080; 2. DR MINT; MINT-175797; -. DR STRING; 85962.HP0117; -. DR PaxDb; P56080; -. DR PRIDE; P56080; -. DR EnsemblBacteria; AAD07185; AAD07185; HP_0117. DR GeneID; 900364; -. DR KEGG; heo:C694_00580; -. DR KEGG; hpy:HP0117; -. DR PATRIC; 20591449; VBIHelPyl33062_0124. DR eggNOG; ENOG41082XB; Bacteria. DR eggNOG; COG0731; LUCA. DR OMA; SCGIDEL; -. DR OrthoDB; EOG6TTVP9; -. DR BioCyc; HPY:HP0117-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Metal-binding; KW Reference proteome; S-adenosyl-L-methionine. FT CHAIN 1 308 UPF0026 protein HP_0117. FT /FTId=PRO_0000217864. FT METAL 33 33 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255}. FT METAL 37 37 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255}. FT METAL 40 40 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255}. SQ SEQUENCE 308 AA; 34405 MW; BBAA863283FBDF4B CRC64; MAKENPPIVF GPVLSRRFGK SLGVDLSPSK KQCNYNCIYC ELGKAKPIER MEEVIKVETL INAIQNALNN LTTPIDVLTI TANGEPTLYP HLLELIQSIK PFLKGVKTLI LSNGSLFYEP KVQQALKEFD IVKFSLDAID LKAFERVDKP YSKDINKILE GILRFSQIYQ GQLVAEVLLI KGVNDSANNL KLIAAFLKQI NIARVDLSTI DRPSSFKAPK LSEDELLKCS LFFEGLCVSL PKRSITQAKK LISCGIDELL ALISRRPLSA EEAPLILDSN AFKHLETLLN HKQITIKKVG SLEFYCAF // ID Y1459_HELPY Reviewed; 262 AA. AC P55986; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=Uncharacterized RNA pseudouridine synthase HP_1459; DE EC=5.4.99.-; DE AltName: Full=RNA pseudouridylate synthase; DE AltName: Full=RNA-uridine isomerase; GN OrderedLocusNames=HP_1459; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: RNA uridine = RNA pseudouridine. CC -!- SIMILARITY: Belongs to the pseudouridine synthase RsuA family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00182}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08501.1; -; Genomic_DNA. DR PIR; C64702; C64702. DR RefSeq; NP_208250.1; NC_000915.1. DR RefSeq; WP_000398405.1; NC_000915.1. DR ProteinModelPortal; P55986; -. DR DIP; DIP-3572N; -. DR IntAct; P55986; 1. DR MINT; MINT-178262; -. DR STRING; 85962.HP1459; -. DR PaxDb; P55986; -. DR PRIDE; P55986; -. DR EnsemblBacteria; AAD08501; AAD08501; HP_1459. DR GeneID; 899834; -. DR KEGG; hpy:HP1459; -. DR PATRIC; 20594329; VBIHelPyl33062_1533. DR eggNOG; ENOG4105FE9; Bacteria. DR eggNOG; COG1187; LUCA. DR KO; K06178; -. DR OMA; HAFMANA; -. DR OrthoDB; EOG6130DV; -. DR BioCyc; HPY:HP1459-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR Gene3D; 3.10.290.10; -; 1. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR000748; PsdUridine_synth_RsuA/RluB/E/F. DR InterPro; IPR018496; PsdUridine_synth_RsuA/RluB_CS. DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluD. DR InterPro; IPR002942; S4_RNA-bd. DR Pfam; PF00849; PseudoU_synth_2; 1. DR Pfam; PF01479; S4; 1. DR SMART; SM00363; S4; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR TIGRFAMs; TIGR00093; TIGR00093; 1. DR PROSITE; PS01149; PSI_RSU; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; RNA-binding. FT CHAIN 1 262 Uncharacterized RNA pseudouridine FT synthase HP_1459. FT /FTId=PRO_0000100026. FT DOMAIN 6 70 S4 RNA-binding. {ECO:0000255|PROSITE- FT ProRule:PRU00182}. FT ACT_SITE 108 108 Nucleophile. {ECO:0000250}. SQ SEQUENCE 262 AA; 30228 MW; 9FDC9FB290F14EA9 CRC64; MEGFSLRINQ FLAHYTKHSR REAEKLVLEG RVKINHEHAK LASVVKENDR VFLDKRLIKP LKNKKFSVLV YHKPKGELVS KADPLKRRVI YESLEKKYAH FAPVGRLDFA SEGVLLLSDS KAVVSALMHA DLEKEYLIKI QGFVTREMEN AMQEGLKLEN ATKGAHQKTP IKSMEFAPFI GYEIIKNHAK YSKLRVIINE GKNRELRRFF AFFNAGVLDL RRVRYGFVNL NALPVGKMRF LNRQEYNELH AFMANAANVK GD // ID Y232_HELPY Reviewed; 215 AA. AC O25018; DT 19-JUL-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 73. DE RecName: Full=UPF0323 lipoprotein HP_0232 {ECO:0000255|HAMAP-Rule:MF_01421}; DE Flags: Precursor; GN OrderedLocusNames=HP_0232; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP- CC Rule:MF_01421}; Lipid-anchor {ECO:0000255|HAMAP-Rule:MF_01421}. CC -!- SIMILARITY: Belongs to the UPF0323 family. {ECO:0000255|HAMAP- CC Rule:MF_01421}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07300.1; -; Genomic_DNA. DR PIR; H64548; S70997. DR RefSeq; NP_207030.1; NC_000915.1. DR RefSeq; WP_000743516.1; NC_018939.1. DR ProteinModelPortal; O25018; -. DR DIP; DIP-3157N; -. DR IntAct; O25018; 18. DR MINT; MINT-172836; -. DR STRING; 85962.HP0232; -. DR PaxDb; O25018; -. DR PRIDE; O25018; -. DR EnsemblBacteria; AAD07300; AAD07300; HP_0232. DR GeneID; 900177; -. DR KEGG; heo:C694_01170; -. DR KEGG; hpy:HP0232; -. DR PATRIC; 20591689; VBIHelPyl33062_0243. DR eggNOG; ENOG4108UHV; Bacteria. DR eggNOG; ENOG4111I9E; LUCA. DR OMA; SSRTHII; -. DR OrthoDB; EOG6MM1MZ; -. DR BioCyc; HPY:HP0232-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR HAMAP; MF_01421; UPF0323; 1. DR InterPro; IPR020913; UPF0323. DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Lipoprotein; Membrane; Palmitate; KW Reference proteome; Signal. FT SIGNAL 1 27 {ECO:0000255|HAMAP-Rule:MF_01421}. FT CHAIN 28 215 UPF0323 lipoprotein HP_0232. FT /FTId=PRO_0000036327. FT LIPID 28 28 N-palmitoyl cysteine. {ECO:0000255|HAMAP- FT Rule:MF_01421}. FT LIPID 28 28 S-diacylglycerol cysteine. FT {ECO:0000255|HAMAP-Rule:MF_01421}. SQ SEQUENCE 215 AA; 22886 MW; E0B8AADF875C3999 CRC64; MKKPYRKISD YAIVGGLSAL VMVSIVGCKS NADDKPKEQS SLSQSVQKGA FVILEEQKDK SYKVVEEYPS SRTHIIVRDL QGNERVLSNE EIQKLIKEEE AKIDNGTSKL VQPNNGGSNE GSGFGLGSAI LGSAAGAILG SYIGNKLFNN PNYQQNAQRT YKSPQAYQRS QNSFSKSAPS ASSMGGASKG QSGFFGSSRP TSSPAVSSGT RGFNS // ID Y347_HELPY Reviewed; 298 AA. AC O25114; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Uncharacterized RNA pseudouridine synthase HP_0347; DE EC=5.4.99.-; DE AltName: Full=RNA pseudouridylate synthase; DE AltName: Full=RNA-uridine isomerase; GN OrderedLocusNames=HP_0347; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: RNA uridine = RNA pseudouridine. CC -!- INTERACTION: CC P94844:dapB; NbExp=3; IntAct=EBI-7497815, EBI-7497752; CC -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07404.1; -; Genomic_DNA. DR PIR; C64563; C64563. DR RefSeq; NP_207145.1; NC_000915.1. DR RefSeq; WP_001117124.1; NC_018939.1. DR ProteinModelPortal; O25114; -. DR DIP; DIP-3403N; -. DR IntAct; O25114; 10. DR MINT; MINT-169833; -. DR STRING; 85962.HP0347; -. DR PaxDb; O25114; -. DR PRIDE; O25114; -. DR EnsemblBacteria; AAD07404; AAD07404; HP_0347. DR GeneID; 899056; -. DR KEGG; heo:C694_01760; -. DR KEGG; hpy:HP0347; -. DR PATRIC; 20591927; VBIHelPyl33062_0360. DR eggNOG; ENOG4105EI2; Bacteria. DR eggNOG; COG0564; LUCA. DR KO; K06180; -. DR OMA; GVFDKPP; -. DR OrthoDB; EOG6P070X; -. DR BioCyc; HPY:HP0347-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR006224; PsdUridine_synth_RluC/D_CS. DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluD. DR Pfam; PF00849; PseudoU_synth_2; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR PROSITE; PS01129; PSI_RLU; 1. PE 1: Evidence at protein level; KW Complete proteome; Isomerase; Reference proteome. FT CHAIN 1 298 Uncharacterized RNA pseudouridine FT synthase HP_0347. FT /FTId=PRO_0000162733. FT ACT_SITE 119 119 {ECO:0000250}. SQ SEQUENCE 298 AA; 34347 MW; 116E4DD87779B15C CRC64; MPFVEEEFEI LKPTKALFFV RDVLKCSLKE AQRHLDKQRL KQNQQAVRKS QIIQGVVRLI HFKPNEKTQA LVFETKDFGV FDKPHQVYTH PKGYFYHESL LDCIQSHFGK NAHPAHRLDY ETSGLVLAGK TLQSVKDLKA LFMQKKVKKT YLALAHGLVE KSMKIDKPIL TPQNIQKDLH IRSKISPLGK QSITLVEPLS YNPFLDISLL KITPLTGRTH QIRLHLSSVD HRIVGEGLYG VADENAREYL QLKRENNAPL LMLHAASLEF EFKGAIYKIA SPMPERFMPF LKDLSFFY // ID Y1044_HELPY Reviewed; 370 AA. AC O25685; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Uncharacterized metallophosphoesterase HP_1044; DE EC=3.1.-.-; GN OrderedLocusNames=HP_1044; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000250}; CC Note=Binds 2 divalent metal cations. {ECO:0000250}; CC -!- SIMILARITY: Belongs to the metallophosphoesterase superfamily. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08089.1; -; Genomic_DNA. DR PIR; D64650; D64650. DR RefSeq; NP_207834.1; NC_000915.1. DR RefSeq; WP_000908758.1; NC_018939.1. DR ProteinModelPortal; O25685; -. DR STRING; 85962.HP1044; -. DR PaxDb; O25685; -. DR PRIDE; O25685; -. DR DNASU; 899579; -. DR EnsemblBacteria; AAD08089; AAD08089; HP_1044. DR GeneID; 899579; -. DR KEGG; heo:C694_05400; -. DR KEGG; hpy:HP1044; -. DR PATRIC; 20593425; VBIHelPyl33062_1093. DR eggNOG; ENOG4105DIN; Bacteria. DR eggNOG; COG1408; LUCA. DR KO; K07098; -. DR OMA; EYYHGIE; -. DR OrthoDB; EOG6HJ263; -. DR BioCyc; HPY:HP1044-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.60.21.10; -; 1. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR Pfam; PF00149; Metallophos; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Metal-binding; Reference proteome. FT CHAIN 1 370 Uncharacterized metallophosphoesterase FT HP_1044. FT /FTId=PRO_0000172855. FT METAL 152 152 Divalent metal cation 1. {ECO:0000250}. FT METAL 154 154 Divalent metal cation 1. {ECO:0000250}. FT METAL 184 184 Divalent metal cation 1. {ECO:0000250}. FT METAL 184 184 Divalent metal cation 2. {ECO:0000250}. FT METAL 215 215 Divalent metal cation 2. {ECO:0000250}. FT METAL 306 306 Divalent metal cation 2. {ECO:0000250}. FT METAL 308 308 Divalent metal cation 1. {ECO:0000250}. SQ SEQUENCE 370 AA; 42457 MW; 1392DC99BC70AE0C CRC64; MLISIAFLLV LYLLNYSSFR MLKSFLTLKK ISQYAYLWFF ILLSIGEAAF VFYRNIMPSH LFVLTSACSF VSFIIFILSL SFYGFSYSIE KIDFLHSRRK SLKNFLKLGF YLALLGYFWR GFYEGLARPK IKETPIYLDK LDKELKIILL TDMHVGSLLQ KDFVDYIVEE VNQKEVDMVL IGGDLVDESI EKVKSFLLPL NNLKSTHGTF YVPGNHEYYH GIEPILSFLD TLNLTILGNE CVHLGGINLC GVYDYFARKR QNFAPDIDKA LKKRNESKPT ILLAHQPKQI RSLKESHSVD LVLSGHTHAG QIFPFSLLVK LAQTYLHGLY KHSPTTQIYV SSGAGYWGIP LRFLAPSEIA YLRLLPKNQA // ID Y1247_HELPY Reviewed; 340 AA. AC O25842; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Protein HP_1247; GN OrderedLocusNames=HP_1247; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP INTERACTION. RA Legrain P.; RL Unpublished observations (APR-2000). CC -!- FUNCTION: Could be the functional equivalent of DNA polymerase III CC delta subunit (HolA). CC -!- SUBUNIT: Seems to interact with H.pylori HolB. CC -!- INTERACTION: CC O25829:HP_1231; NbExp=3; IntAct=EBI-527915, EBI-527926; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08299.1; -; Genomic_DNA. DR PIR; G64675; G64675. DR RefSeq; NP_208039.1; NC_000915.1. DR RefSeq; WP_000285823.1; NC_018939.1. DR ProteinModelPortal; O25842; -. DR DIP; DIP-3679N; -. DR IntAct; O25842; 1. DR MINT; MINT-176287; -. DR STRING; 85962.HP1247; -. DR PaxDb; O25842; -. DR PRIDE; O25842; -. DR DNASU; 898813; -. DR EnsemblBacteria; AAD08299; AAD08299; HP_1247. DR GeneID; 898813; -. DR KEGG; heo:C694_06445; -. DR KEGG; hpy:HP1247; -. DR PATRIC; 20593871; VBIHelPyl33062_1306. DR eggNOG; ENOG4108VMB; Bacteria. DR eggNOG; COG1466; LUCA. DR KO; K02340; -. DR OMA; FYQLFLF; -. DR OrthoDB; EOG6M9DZK; -. DR BioCyc; HPY:HP1247-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009360; C:DNA polymerase III complex; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR InterPro; IPR010372; DNA_pol3_delta_N. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF06144; DNA_pol3_delta; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA replication; DNA-directed DNA polymerase; KW Nucleotidyltransferase; Reference proteome; Transferase. FT CHAIN 1 340 Protein HP_1247. FT /FTId=PRO_0000105507. SQ SEQUENCE 340 AA; 39490 MW; 3BD4151FD5961964 CRC64; MYRKDLDHYL KQRLPKAVFL YGEFDFFIHY YIQTISALFK CDNPDIETSL FYASDYEKSQ IATLLEQDSL FGGSSLVVLK LDFALHKKFK ENDINLFLKA LERPSHNRLI IGLYNAKSDT TKYKYTSDAI VKFFQKSPLK DEAICARFFI PKTWESLKFL QERANFLHLD ISGHLLNALF EINNEDLGVS FNDLDKLAVL NAPITLEDIQ ELSSNAGDMD LQKLILGLFL KKSALDIYDY LLKEGKKDAD ILRGLERYFY QLFLFFAHIK TTGLMDAKEV LGYAPPKEIA ENYAKNALRL KEAGYKRVFE IFRLWHIQSM QGQKELGFLY LTSIQKIINP // ID Y1330_HELPY Reviewed; 115 AA. AC O25888; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=Uncharacterized protein HP_1330; GN OrderedLocusNames=HP_1330; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AzlD/HI_1737/HP1330 family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08371.1; -; Genomic_DNA. DR PIR; B64686; B64686. DR RefSeq; NP_208122.1; NC_000915.1. DR RefSeq; WP_000928535.1; NC_018939.1. DR ProteinModelPortal; O25888; -. DR STRING; 85962.HP1330; -. DR PaxDb; O25888; -. DR PRIDE; O25888; -. DR EnsemblBacteria; AAD08371; AAD08371; HP_1330. DR GeneID; 898769; -. DR KEGG; heo:C694_06865; -. DR KEGG; hpy:HP1330; -. DR PATRIC; 20594041; VBIHelPyl33062_1391. DR eggNOG; COG1687; LUCA. DR OMA; YCFKDIH; -. DR OrthoDB; EOG6J1DMH; -. DR BioCyc; HPY:HP1330-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR InterPro; IPR008407; Brnchd-chn_aa_trnsp_AzlD. DR Pfam; PF05437; AzlD; 1. DR PIRSF; PIRSF003203; AzlD; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 115 Uncharacterized protein HP_1330. FT /FTId=PRO_0000128698. FT TRANSMEM 6 26 Helical. {ECO:0000255}. FT TRANSMEM 43 63 Helical. {ECO:0000255}. FT TRANSMEM 84 104 Helical. {ECO:0000255}. SQ SEQUENCE 115 AA; 13303 MW; 9FB8A7291F2E694A CRC64; MLMHSILIIL VIILTTYFTR IWPFMVFNAK NPPNDFVRYL GRALSCSVIG MLVIYCFKDI HILKPPYGIN EITAFLSVIL LHRIFKVFVL SITLPTILYM VLVQSHALEK AFFNP // ID Y285_HELPY Reviewed; 418 AA. AC P56130; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Putative methylthiotransferase HP_0285; DE EC=2.-.-.-; GN OrderedLocusNames=HP_0285; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|PROSITE-ProRule:PRU00780}; CC Note=Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|PROSITE-ProRule:PRU00780}; CC -!- SIMILARITY: Belongs to the methylthiotransferase family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 MTTase N-terminal domain. CC {ECO:0000255|PROSITE-ProRule:PRU00780}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07353.1; -; Genomic_DNA. DR PIR; E64555; E64555. DR RefSeq; NP_207083.1; NC_000915.1. DR RefSeq; WP_000758579.1; NC_018939.1. DR ProteinModelPortal; P56130; -. DR DIP; DIP-3406N; -. DR IntAct; P56130; 4. DR MINT; MINT-178860; -. DR STRING; 85962.HP0285; -. DR PaxDb; P56130; -. DR PRIDE; P56130; -. DR EnsemblBacteria; AAD07353; AAD07353; HP_0285. DR GeneID; 899195; -. DR KEGG; heo:C694_01440; -. DR KEGG; hpy:HP0285; -. DR PATRIC; 20591797; VBIHelPyl33062_0296. DR eggNOG; ENOG4105CIW; Bacteria. DR eggNOG; COG0621; LUCA. DR OMA; DLIFHKN; -. DR OrthoDB; EOG6P5ZD8; -. DR BioCyc; HPY:HP0285-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009451; P:RNA modification; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR005839; Methylthiotransferase. DR InterPro; IPR020612; Methylthiotransferase_CS. DR InterPro; IPR013848; Methylthiotransferase_N. DR InterPro; IPR006467; MiaB-like_C. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF00919; UPF0004; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR01579; MiaB-like-C; 1. DR TIGRFAMs; TIGR00089; TIGR00089; 1. DR PROSITE; PS51449; MTTASE_N; 1. DR PROSITE; PS01278; MTTASE_RADICAL; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Metal-binding; KW Reference proteome; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 418 Putative methylthiotransferase HP_0285. FT /FTId=PRO_0000141742. FT DOMAIN 2 110 MTTase N-terminal. {ECO:0000255|PROSITE- FT ProRule:PRU00780}. FT METAL 11 11 Iron-sulfur (4Fe-4S). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. FT METAL 45 45 Iron-sulfur (4Fe-4S). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. FT METAL 74 74 Iron-sulfur (4Fe-4S). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. FT METAL 144 144 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. FT METAL 148 148 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. FT METAL 151 151 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|PROSITE-ProRule:PRU00780}. SQ SEQUENCE 418 AA; 47823 MW; 28C181B97DE58AB5 CRC64; MKKVYFKTFG CRTNLFDTQV MSENLKDFST TLEEQEADII IINSCTVTNG ADSAVRSYAK KMARLDKEVL FTGCGVKTQG KELFEKGFLK GVFGHDNKEK INALLQEKKR FFIDDNLENK HLDTTMVSEF VGKTRAFIKI QEGCDFDCNY CIIPSVRGRA RSFEERKILE QVGLLCSKGV QEVVLTGTNV GSYGKDRGSN IARLIKKLSQ IAGLKRIRIG SLEPNQINDE FLELLEEDFL EKHLHIALQH SHDLMLERMN RRNRTKSDRE LLETIASKNF AIGTDFIVGH PGESGSVFEK AFKNLESLPL THIHPFIYSK RKDTPSSLMT DSVSLEDSKK RLNAIKDLIF HKNKAFRQLQ LKLNTPLKAL VEVQKDGEFK ALDQFFNPIK IKSDKPLRAS FLEIKEYEIK ERENHAVF // ID Y415_HELPY Reviewed; 623 AA. AC O25170; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 94. DE RecName: Full=Uncharacterized MscS family protein HP_0415; GN OrderedLocusNames=HP_0415; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the MscS (TC 1.A.23) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07481.1; -; Genomic_DNA. DR PIR; G64571; G64571. DR RefSeq; NP_207213.1; NC_000915.1. DR RefSeq; WP_001238108.1; NC_018939.1. DR ProteinModelPortal; O25170; -. DR DIP; DIP-3304N; -. DR IntAct; O25170; 2. DR MINT; MINT-171960; -. DR TCDB; 1.A.23.4.10; the small conductance mechanosensitive ion channel (mscs) family. DR PaxDb; O25170; -. DR PRIDE; O25170; -. DR EnsemblBacteria; AAD07481; AAD07481; HP_0415. DR GeneID; 898895; -. DR KEGG; heo:C694_02115; -. DR KEGG; hpy:HP0415; -. DR PATRIC; 20592081; VBIHelPyl33062_0430. DR eggNOG; ENOG4105D64; Bacteria. DR eggNOG; COG0668; LUCA. DR KO; K16052; -. DR OMA; FRKEVIN; -. DR OrthoDB; EOG6X6R9R; -. DR BioCyc; HPY:HP0415-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR011066; MscC_channel_C. DR InterPro; IPR006685; MscS_channel. DR InterPro; IPR006686; MscS_channel_CS. DR InterPro; IPR011014; MscS_channel_TM-2. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. DR SUPFAM; SSF82689; SSF82689; 2. DR SUPFAM; SSF82861; SSF82861; 1. DR PROSITE; PS01246; UPF0003; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 623 Uncharacterized MscS family protein FT HP_0415. FT /FTId=PRO_0000110249. FT TRANSMEM 242 262 Helical. {ECO:0000255}. FT TRANSMEM 288 308 Helical. {ECO:0000255}. FT TRANSMEM 318 338 Helical. {ECO:0000255}. FT TRANSMEM 361 381 Helical. {ECO:0000255}. FT TRANSMEM 387 407 Helical. {ECO:0000255}. SQ SEQUENCE 623 AA; 71286 MW; EC426BD5616AD342 CRC64; MRLLLWWVLV LSLFLNPLRA VEEHETDAVD LFLIFNQINQ LNQVIETYKK NPERSAEISL YNTQKNDLIK SLTSKVLNER DKIGIDINQN LKEQEKIKKR LSKSINGDDF YTFMKDRLSL DILLIDEILY RFIDKIRSSI DIFSEQKDVE SISDAFLLRL GQFKLYTFPK NLGNVKMHEL EQMFSDYELR LNTYTEVLRY IKNHPKEVLP KNLIMEVNMD FVLNKISKVL PFTTHSLQVS KIVLALTILA LLLGLRKLIT WLLALLLDRI FEIMQRNKKM HVNVQKSIVS PVSVFLALFS CDVALDIFYY PNASPPKVSM WVGAVYIMLL AWLVIALFKG YGEALVTNMA TKSTHNFRKE VINLILKVVY FLIFIVALLG VLKQLGFNVS AIIASLGIGG LAVALAVKDV LANFFASVIL LLDNSFSQGD WIVCGEVEGT VVEMGLRRTT IRAFDNALLS VPNSELAGKP IRNWSRRKVG RRIKMEIGLT YSSSQSALQL CVKDIKEMLE NHPKIANGAD SALQNVSDYR YMFKKDIVSI DDFLGYKNNL FVFLDQFADS SINILVYCFS KTVVWEEWLE VKEDVMLKIM GIVEKHHLSF AFPSQSLYVE SLPEVSLKEG AKI // ID Y262_HELPY Reviewed; 193 AA. AC O25042; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 11-JAN-2001, sequence version 2. DT 17-FEB-2016, entry version 64. DE RecName: Full=Uncharacterized protein HP_0262; GN OrderedLocusNames=HP_0262; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: To M.jannaschii MJ1208.1. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD07336.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07336.1; ALT_INIT; Genomic_DNA. DR PIR; F64552; F64552. DR RefSeq; NP_207060.1; NC_000915.1. DR DIP; DIP-3315N; -. DR IntAct; O25042; 3. DR MINT; MINT-164361; -. DR STRING; 85962.HP0262; -. DR REBASE; 4213; HpyAORF263P. DR PaxDb; O25042; -. DR EnsemblBacteria; AAD07336; AAD07336; HP_0262. DR GeneID; 899075; -. DR KEGG; hpy:HP0262; -. DR PATRIC; 20591751; VBIHelPyl33062_0273. DR eggNOG; ENOG4105UHH; Bacteria. DR eggNOG; ENOG4111RPA; LUCA. DR KO; K01155; -. DR OMA; KRALWVH; -. DR OrthoDB; EOG6ZPSZD; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 193 Uncharacterized protein HP_0262. FT /FTId=PRO_0000128680. SQ SEQUENCE 193 AA; 22707 MW; 3D6ED5D4F00B4945 CRC64; MFGLGLADVI LERFKDFMRE QPEPYKFLQV FYAQEKERFL NHKMSDYIKQ NKSKEEASIL ARQGFVSAVG RALEKIIELL LKDFCIKNNV KMTNDKILRA KRINGELDRV KRALWVHFGE YSVLPDIILY QTNKDNIKIL AILSVKNSFR ERFTETPYWK LKLLQSPVTS HIKVFMITPD NDDEISFKDK PKG // ID Y169_HELPY Reviewed; 422 AA. AC P56113; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 73. DE RecName: Full=Uncharacterized protease HP_0169; DE EC=3.4.-.-; DE Flags: Precursor; GN OrderedLocusNames=HP_0169; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the peptidase U32 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07235.1; -; Genomic_DNA. DR PIR; A64541; A64541. DR RefSeq; NP_206968.1; NC_000915.1. DR RefSeq; WP_001077422.1; NC_018939.1. DR ProteinModelPortal; P56113; -. DR STRING; 85962.HP0169; -. DR MEROPS; U32.002; -. DR PaxDb; P56113; -. DR PRIDE; P56113; -. DR EnsemblBacteria; AAD07235; AAD07235; HP_0169. DR GeneID; 899006; -. DR KEGG; heo:C694_00835; -. DR KEGG; hpy:HP0169; -. DR PATRIC; 20591559; VBIHelPyl33062_0179. DR eggNOG; ENOG4105CFP; Bacteria. DR eggNOG; COG0826; LUCA. DR KO; K08303; -. DR OMA; DFQVNGE; -. DR OrthoDB; EOG6GJBTC; -. DR BioCyc; HPY:HP0169-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR InterPro; IPR001539; Peptidase_U32. DR Pfam; PF01136; Peptidase_U32; 1. DR PROSITE; PS01276; PEPTIDASE_U32; 1. PE 3: Inferred from homology; KW Complete proteome; Hydrolase; Protease; Reference proteome; Signal. FT SIGNAL 1 58 {ECO:0000255}. FT CHAIN 59 422 Uncharacterized protease HP_0169. FT /FTId=PRO_0000028526. SQ SEQUENCE 422 AA; 47275 MW; C2CDADA9480A77A1 CRC64; MNQVELLSPA GNLKKLKIAL NYGADAVYGG VSHFSLRNRA GKEFTLETFK EGIDYAHALN KKVYATINGF PFNSQLKLLE EHIDKMAELE PDAFIIAAPG VVKLALKIAP HIPIHLSTQA NVLNLLDAQV FYDLGVKRIV CARELSLNDA IEIKKALPNL ELEIFVHGSM CFAFSGRCLI SALQKGRVPN RGSCANDCRF DYEYYVKNPD NGVMMRLVEE EGVGTHIFNA KDLNLSGHIA EILSSNAISA LKIEGRTKSS YYAAQTTRIY RLAVDDFYHN TLKPSFYASE LNTLKNRGFT DGYLMRRPFE RLDTQNHQTA ISEGDFQVNG EITEDGRFFA CKFTTTTNTA YEIIAPKNAA ITPIVNEIGK IYTFEKRSYL VLYKILLENN TELETIHSGN VNLVRLPAPL PAFSFLRTQV RV // ID Y386_HELPY Reviewed; 78 AA. AC P64659; O25148; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 45. DE RecName: Full=Uncharacterized protein HP_0386; GN OrderedLocusNames=HP_0386; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07468.1; -; Genomic_DNA. DR PIR; B64568; B64568. DR RefSeq; NP_207184.1; NC_000915.1. DR RefSeq; WP_000051172.1; NC_018939.1. DR ProteinModelPortal; P64659; -. DR IntAct; P64659; 1. DR STRING; 85962.HP0386; -. DR PaxDb; P64659; -. DR PRIDE; P64659; -. DR EnsemblBacteria; AAD07468; AAD07468; HP_0386. DR GeneID; 899224; -. DR KEGG; heo:C694_01960; -. DR KEGG; hpy:HP0386; -. DR PATRIC; 20592011; VBIHelPyl33062_0399. DR OMA; DYLHERC; -. DR OrthoDB; EOG6HTP1V; -. DR BioCyc; HPY:HP0386-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 78 Uncharacterized protein HP_0386. FT /FTId=PRO_0000128683. SQ SEQUENCE 78 AA; 9297 MW; 111FBECFF7F7DA8E CRC64; MSLENDSLEI TYLGKRYKIS LNNTFSDEMK RTLKERFHNQ ELNALELLKD YLHESCQNEY LHNELQKLLE KISSCSIT // ID Y395_HELPY Reviewed; 222 AA. AC O25156; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 82. DE RecName: Full=UPF0001 protein HP_0395; GN OrderedLocusNames=HP_0395; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- SIMILARITY: Belongs to the UPF0001 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07459.1; -; Genomic_DNA. DR PIR; C64569; C64569. DR RefSeq; NP_207193.1; NC_000915.1. DR RefSeq; WP_000888213.1; NC_018939.1. DR ProteinModelPortal; O25156; -. DR STRING; 85962.HP0395; -. DR PaxDb; O25156; -. DR PRIDE; O25156; -. DR EnsemblBacteria; AAD07459; AAD07459; HP_0395. DR GeneID; 900071; -. DR KEGG; heo:C694_02005; -. DR KEGG; hpy:HP0395; -. DR PATRIC; 20592029; VBIHelPyl33062_0408. DR eggNOG; ENOG4105DFA; Bacteria. DR eggNOG; COG0325; LUCA. DR KO; K06997; -. DR OMA; LMCIGAH; -. DR OrthoDB; EOG6G7R84; -. DR BioCyc; HPY:HP0395-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.20.20.10; -; 1. DR InterPro; IPR001608; Ala_racemase_N. DR InterPro; IPR029066; PLP-binding_barrel. DR InterPro; IPR011078; UPF0001. DR PANTHER; PTHR10146; PTHR10146; 1. DR Pfam; PF01168; Ala_racemase_N; 1. DR PIRSF; PIRSF004848; YBL036c_PLPDEIII; 1. DR SUPFAM; SSF51419; SSF51419; 1. DR TIGRFAMs; TIGR00044; TIGR00044; 1. DR PROSITE; PS01211; UPF0001; 1. PE 3: Inferred from homology; KW Complete proteome; Pyridoxal phosphate; Reference proteome. FT CHAIN 1 222 UPF0001 protein HP_0395. FT /FTId=PRO_0000163200. FT MOD_RES 35 35 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 222 AA; 25011 MW; 5A6B172FD3585949 CRC64; MLDYRQKIDA LITKIEKART AYSRHHIVKI VAVSKNASPE AIQHYYNCSQ RAFGENKVQD LKTKMHSLEH LPLEWHMIGS LQENKINALL SLKPALLHSL DSLKLALKIE KRCEILGVNL NALLQVNSAY EESKSGVVPE EALEIYSQIS ETCKHLKLKG LMCIGAHTDD EKEIEKSFIT TKKLFDQIKN ASVLSMGMSD DFELAIACGA NLLRIGSFLF KE // ID Y451_HELPY Reviewed; 94 AA. AC Q9WXL5; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1999, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=Putative uncharacterized protein HP_0451; GN OrderedLocusNames=HP_0451; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CAUTION: Could be the product of a pseudogene. There is no CC ortholog for HP_0451 in strain J99. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD24378.1; -; Genomic_DNA. DR RefSeq; NP_207249.1; NC_000915.1. DR RefSeq; WP_000599839.1; NC_018939.1. DR ProteinModelPortal; Q9WXL5; -. DR STRING; 85962.HP0451; -. DR PaxDb; Q9WXL5; -. DR PRIDE; Q9WXL5; -. DR EnsemblBacteria; AAD24378; AAD24378; HP_0451. DR GeneID; 900267; -. DR KEGG; hpy:HP0451; -. DR PATRIC; 20592161; VBIHelPyl33062_0469. DR OMA; ENHMKQR; -. DR OrthoDB; EOG6PZX78; -. DR BioCyc; HPY:HP0451-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 5: Uncertain; KW Complete proteome; Reference proteome. FT CHAIN 1 94 Putative uncharacterized protein HP_0451. FT /FTId=PRO_0000128685. SQ SEQUENCE 94 AA; 11482 MW; D2910A7F4895BD86 CRC64; MILETISKQL QEQQESLNKD YRKKLESIKE RSDRLESDLK TQFDAQLEKW EQNFKGYEQQ LTDILNEREQ LDLDQQRLNA QKQALENHMK QREE // ID Y585A_HELPY Reviewed; 76 AA. AC P57798; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 27-APR-2001, sequence version 1. DT 22-JUL-2015, entry version 53. DE RecName: Full=Uncharacterized protein HP_0585.1; GN OrderedLocusNames=HP_0585.1; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP IDENTIFICATION. RA Medigue C., Bocs S.; RL Unpublished observations (MAR-2001). CC -!- SIMILARITY: To C.jejuni CJ1397. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; WP_000174130.1; NC_018939.1. DR RefSeq; YP_009112935.1; NC_000915.1. DR ProteinModelPortal; P57798; -. DR GeneID; 22656733; -. DR KEGG; heo:C694_03020; -. DR OMA; QCTLLHS; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046914; F:transition metal ion binding; IEA:InterPro. DR InterPro; IPR007167; Fe-transptr_FeoA. DR InterPro; IPR008988; Transcriptional_repressor_C. DR Pfam; PF04023; FeoA; 1. DR SMART; SM00899; FeoA; 1. DR SUPFAM; SSF50037; SSF50037; 1. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 76 Uncharacterized protein HP_0585.1. FT /FTId=PRO_0000128691. SQ SEQUENCE 76 AA; 8719 MW; DF892034D841A822 CRC64; MTLNEAIKDK VYEIVEIANC DEALKKRFLS FGIHEGVQCI LLHYSMKKAT LSVKINRIQV ALRSHEAQYL VIKESV // ID Y189_HELPY Reviewed; 177 AA. AC O24989; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 91. DE RecName: Full=UPF0114 protein HP_0189; GN OrderedLocusNames=HP_0189; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the UPF0114 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07256.1; -; Genomic_DNA. DR PIR; E64543; E64543. DR RefSeq; NP_206988.1; NC_000915.1. DR RefSeq; WP_000890458.1; NC_018939.1. DR ProteinModelPortal; O24989; -. DR DIP; DIP-3137N; -. DR IntAct; O24989; 1. DR MINT; MINT-176435; -. DR STRING; 85962.HP0189; -. DR PaxDb; O24989; -. DR PRIDE; O24989; -. DR EnsemblBacteria; AAD07256; AAD07256; HP_0189. DR GeneID; 898953; -. DR KEGG; heo:C694_00940; -. DR KEGG; hpy:HP0189; -. DR PATRIC; 20591599; VBIHelPyl33062_0199. DR eggNOG; ENOG4108TEB; Bacteria. DR eggNOG; COG2862; LUCA. DR OMA; FVSRMNL; -. DR OrthoDB; EOG6VHZH0; -. DR BioCyc; HPY:HP0189-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR HAMAP; MF_00143; UPF0114; 1. DR InterPro; IPR005134; UPF0114. DR InterPro; IPR020761; UPF0114_bac. DR InterPro; IPR020765; UPF0114_gbac. DR Pfam; PF03350; UPF0114; 1. DR TIGRFAMs; TIGR00645; HI0507; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 177 UPF0114 protein HP_0189. FT /FTId=PRO_0000214371. FT TRANSMEM 15 35 Helical. {ECO:0000255}. FT TRANSMEM 54 74 Helical. {ECO:0000255}. FT TRANSMEM 145 165 Helical. {ECO:0000255}. SQ SEQUENCE 177 AA; 19828 MW; 782125BD0BA303DD CRC64; MLEKLIERVL FATRWLLAPL CIAMSLVLVV LGYVFMKELW HMLSHLNTIS ETDLVLSALG LVDLLFMAGL VLMVLLASYE SFVSKLDKVD ASEITWLKHT DFNALKLKVS LSIVAISAIF LLKRYMSLED VLSSIPKDTP LSHNPIFWQV VIHLVFVCSA LLAAVTNNIA FSQNKAH // ID Y190_HELPY Reviewed; 502 AA. AC P56117; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Uncharacterized protein HP_0190; GN OrderedLocusNames=HP_0190; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the phospholipase D family. Cardiolipin CC synthase subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 2 PLD phosphodiesterase domains. CC {ECO:0000255|PROSITE-ProRule:PRU00153}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07257.1; -; Genomic_DNA. DR PIR; F64543; F64543. DR RefSeq; NP_206989.1; NC_000915.1. DR RefSeq; WP_000689051.1; NC_018939.1. DR ProteinModelPortal; P56117; -. DR STRING; 85962.HP0190; -. DR PaxDb; P56117; -. DR PRIDE; P56117; -. DR EnsemblBacteria; AAD07257; AAD07257; HP_0190. DR GeneID; 899993; -. DR KEGG; heo:C694_00945; -. DR KEGG; hpy:HP0190; -. DR PATRIC; 20591601; VBIHelPyl33062_0200. DR eggNOG; ENOG4107RZC; Bacteria. DR eggNOG; COG1502; LUCA. DR OMA; NIDPRSA; -. DR OrthoDB; EOG6VF309; -. DR BioCyc; HPY:HP0190-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR025202; PLD-like_dom. DR InterPro; IPR001736; PLipase_D/transphosphatidylase. DR Pfam; PF13091; PLDc_2; 2. DR SMART; SM00155; PLDc; 2. DR PROSITE; PS50035; PLD; 2. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Repeat; Transferase; Transmembrane; Transmembrane helix. FT CHAIN 1 502 Uncharacterized protein HP_0190. FT /FTId=PRO_0000201290. FT TRANSMEM 1 21 Helical. {ECO:0000255}. FT DOMAIN 162 189 PLD phosphodiesterase 1. FT {ECO:0000255|PROSITE-ProRule:PRU00153}. FT DOMAIN 396 423 PLD phosphodiesterase 2. FT {ECO:0000255|PROSITE-ProRule:PRU00153}. SQ SEQUENCE 502 AA; 58287 MW; C80911F2FB59C714 CRC64; MKIFLVFLSV FFFNGCFGLV YKTPISSSPI SYDPYTTPIG SLYAEKLKEN PNHSAAILLE DGFDALLHRV GLIRMSQKSI DMQTYIYKND LSSQVIAKEL LNAANRGVKV RILLDDNGLD SDFSDIMLLN FHKNIEVKIF NPYYIRNKGL RYFEMLADYE RIKKRMHNKL FIVDNFAVII GGRNIGDNYF DNDLDTNFLD LDALFFGGVA SKAKESFERY WRFHRSIPVS LLRTHKRLKN NAKEIAKLHE KIPISAEDKN QFEKKVNDFI DRFQKYQYPI YYGNAIFLAD SPKKIDTPLY SPIKIAFEKA LKNAKDSVFI ASSYFIPGKK MMKIFKNQIS KGIELNILTN SLSSTDAIVV YGAWERYRNQ LVRMGANVYE IRNDFFNRQI KGRFSTKHSL HGKTIVFDDN LTLLGSFNID PRSAYINTES AVLFDNPSFA KRVRLSLKDH AQQSWHLVVY RHRVIWEAVE EGILIHEKTS PDTSFFLRLI KEWSKVLPER EL // ID Y245_HELPY Reviewed; 105 AA. AC P64657; O25027; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 46. DE RecName: Full=Uncharacterized protein HP_0245; GN OrderedLocusNames=HP_0245; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: To C.jejuni CJ1463. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07321.1; -; Genomic_DNA. DR PIR; E64550; E64550. DR RefSeq; NP_207043.1; NC_000915.1. DR RefSeq; WP_000609401.1; NC_018939.1. DR ProteinModelPortal; P64657; -. DR IntAct; P64657; 1. DR STRING; 85962.HP0245; -. DR PaxDb; P64657; -. DR PRIDE; P64657; -. DR EnsemblBacteria; AAD07321; AAD07321; HP_0245. DR GeneID; 900123; -. DR KEGG; heo:C694_01240; -. DR KEGG; hpy:HP0245; -. DR PATRIC; 20591715; VBIHelPyl33062_0256. DR eggNOG; ENOG4105YKR; Bacteria. DR eggNOG; ENOG41126NS; LUCA. DR OMA; AQTKNDK; -. DR OrthoDB; EOG69KTZ0; -. DR BioCyc; HPY:HP0245-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR016511; UCP007248. DR PIRSF; PIRSF007248; UCP007248; 1. PE 4: Predicted; KW Complete proteome; Reference proteome. FT CHAIN 1 105 Uncharacterized protein HP_0245. FT /FTId=PRO_0000128677. SQ SEQUENCE 105 AA; 12110 MW; 513DA9E6A28E1793 CRC64; MINNNKAMLE QYNVSKLASE EKLKALAQNK NDKLLKEQTD SFEALLLKFM LDSAMKMDNP LYPKAPGDEI YASMYKDTLS KELSGNFGYS EMLFNFLKEQ EKQKP // ID Y560_HELPY Reviewed; 26 AA. AC P64661; O25285; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 07-JAN-2015, entry version 40. DE RecName: Full=Uncharacterized protein HP_0560; GN OrderedLocusNames=HP_0560; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane CC protein {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07633.1; -; Genomic_DNA. DR PIR; H64589; H64589. DR PRIDE; P64661; -. DR EnsemblBacteria; AAD07633; AAD07633; HP_0560. DR BioCyc; HPY:HP0560-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome; Membrane; Reference proteome; Transmembrane; KW Transmembrane helix. FT CHAIN 1 26 Uncharacterized protein HP_0560. FT /FTId=PRO_0000128689. FT TRANSMEM 3 23 Helical. {ECO:0000255}. SQ SEQUENCE 26 AA; 3169 MW; 34FE239BE3139AA1 CRC64; MGIIYLILFL IVIYLLYRIL DVLEQK // ID Y888_HELPY Reviewed; 255 AA. AC O05732; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-JUL-1997, sequence version 1. DT 11-NOV-2015, entry version 98. DE RecName: Full=Probable iron chelatin transport ATP-binding protein HP_0888; GN OrderedLocusNames=HP_0888; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9139899; RA Cao P., Cover T.L.; RT "High-level genetic diversity in the vapD chromosomal region of RT Helicobacter pylori."; RL J. Bacteriol. 179:2852-2856(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of a binding-protein-dependent transport system for CC an iron chelatin. Probably responsible for energy coupling to the CC transport system (Potential). {ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; CC Peripheral membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000255|PROSITE-ProRule:PRU00434}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U94318; AAC45245.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07936.1; -; Genomic_DNA. DR PIR; H64630; H64630. DR RefSeq; NP_207681.1; NC_000915.1. DR RefSeq; WP_000242349.1; NC_018939.1. DR ProteinModelPortal; O05732; -. DR STRING; 85962.HP0888; -. DR PaxDb; O05732; -. DR PRIDE; O05732; -. DR EnsemblBacteria; AAD07936; AAD07936; HP_0888. DR GeneID; 899416; -. DR KEGG; heo:C694_04560; -. DR KEGG; hpy:HP0888; -. DR PATRIC; 20593065; VBIHelPyl33062_0920. DR eggNOG; ENOG4108F1U; Bacteria. DR eggNOG; COG1120; LUCA. DR KO; K02013; -. DR OMA; KARHIKE; -. DR OrthoDB; EOG6VXF8B; -. DR BioCyc; HPY:HP0888-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0006811; P:ion transport; IEA:UniProtKB-KW. DR GO; GO:0055072; P:iron ion homeostasis; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 3: Inferred from homology; KW ATP-binding; Cell inner membrane; Cell membrane; Complete proteome; KW Ion transport; Iron; Iron transport; Membrane; Nucleotide-binding; KW Reference proteome; Transport. FT CHAIN 1 255 Probable iron chelatin transport ATP- FT binding protein HP_0888. FT /FTId=PRO_0000093210. FT DOMAIN 3 240 ABC transporter. {ECO:0000255|PROSITE- FT ProRule:PRU00434}. FT NP_BIND 35 42 ATP. {ECO:0000255|PROSITE- FT ProRule:PRU00434}. SQ SEQUENCE 255 AA; 28682 MW; 84BE756D3332BC3A CRC64; MVLEVKNLSF KYSQKLILDK LSFSVPKNSI TSILAPNGSG KTTLLKCLLG LLKPLEETEI KACNKDILPL KPYEKAKLIA YIPQVEYYAF NFSVLDFVLM GKATHLNLFA MPKAKHIKEA TSVLERLDLE SLKDQGINDL SGGQRQMVLL ARSLLQRTPL LLLDEPTSAL DLKNQALFFD AIKDEMKKRE LSVLVNIHDP NLVARHSTHV VMLKDKKLFL QASTPIAMTS HNLSALYDTP LEAIWHDNKL VVYAL // ID Y924_HELPY Reviewed; 68 AA. AC O25581; DT 10-OCT-2003, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 3. DT 11-NOV-2015, entry version 96. DE RecName: Full=Probable tautomerase HP_0924; DE EC=5.3.2.-; GN OrderedLocusNames=HP_0924; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the 4-oxalocrotonate tautomerase family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07977.1; -; Genomic_DNA. DR PIR; D64635; D64635. DR RefSeq; NP_207716.1; NC_000915.1. DR RefSeq; WP_001115881.1; NC_018939.1. DR PDB; 2ORM; X-ray; 2.10 A; A/B/C/D/E/F=2-68. DR PDB; 3M21; X-ray; 1.90 A; A/B/C/D/E/F=2-68. DR PDBsum; 2ORM; -. DR PDBsum; 3M21; -. DR ProteinModelPortal; O25581; -. DR SMR; O25581; 2-68. DR DIP; DIP-3525N; -. DR IntAct; O25581; 6. DR MINT; MINT-177793; -. DR STRING; 85962.HP0924; -. DR PaxDb; O25581; -. DR PRIDE; O25581; -. DR EnsemblBacteria; AAD07977; AAD07977; HP_0924. DR GeneID; 899453; -. DR KEGG; heo:C694_04755; -. DR KEGG; hpy:HP0924; -. DR PATRIC; 20593149; VBIHelPyl33062_0960. DR eggNOG; ENOG4105VSH; Bacteria. DR eggNOG; COG1942; LUCA. DR KO; K01821; -. DR OMA; YINIRIS; -. DR OrthoDB; EOG62ZHW8; -. DR BioCyc; HPY:HP0924-MONOMER; -. DR EvolutionaryTrace; O25581; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro. DR InterPro; IPR004370; 4-oxalocrotonate_tautomerase. DR InterPro; IPR014347; Tautomerase/MIF_sf. DR InterPro; IPR018191; Tautomerase_Pseudo-typ. DR Pfam; PF01361; Tautomerase; 1. DR SUPFAM; SSF55331; SSF55331; 1. DR TIGRFAMs; TIGR00013; taut; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Isomerase; Reference proteome. FT INIT_MET 1 1 Removed. {ECO:0000250}. FT CHAIN 2 68 Probable tautomerase HP_0924. FT /FTId=PRO_0000209531. FT ACT_SITE 2 2 Proton acceptor; via imino nitrogen. FT {ECO:0000250}. FT STRAND 3 8 {ECO:0000244|PDB:3M21}. FT HELIX 17 35 {ECO:0000244|PDB:3M21}. FT HELIX 39 41 {ECO:0000244|PDB:3M21}. FT STRAND 43 48 {ECO:0000244|PDB:3M21}. FT TURN 51 53 {ECO:0000244|PDB:3M21}. FT STRAND 54 56 {ECO:0000244|PDB:3M21}. FT HELIX 61 65 {ECO:0000244|PDB:3M21}. SQ SEQUENCE 68 AA; 7512 MW; AFAD98CCA757587F CRC64; MPFINIKLVP ENGGPTNEQK QQLIEGVSDL MVKVLNKNKA SIVVIIDEVD SNNYGLGGES VHHLRQKN // ID Y396_HELPY Reviewed; 616 AA. AC O25157; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE RecName: Full=Uncharacterized protein HP_0396; GN OrderedLocusNames=HP_0396; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UbiD family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07460.1; -; Genomic_DNA. DR PIR; D64569; D64569. DR RefSeq; NP_207194.1; NC_000915.1. DR RefSeq; WP_001204347.1; NC_018939.1. DR ProteinModelPortal; O25157; -. DR STRING; 85962.HP0396; -. DR PaxDb; O25157; -. DR PRIDE; O25157; -. DR EnsemblBacteria; AAD07460; AAD07460; HP_0396. DR GeneID; 898885; -. DR KEGG; heo:C694_02010; -. DR KEGG; hpy:HP0396; -. DR PATRIC; 20592031; VBIHelPyl33062_0409. DR eggNOG; ENOG4105D3H; Bacteria. DR eggNOG; COG0043; LUCA. DR KO; K03182; -. DR OMA; ELMLYGF; -. DR OrthoDB; EOG6QZMM7; -. DR BioCyc; HPY:HP0396-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR022390; HBDC. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR InterPro; IPR002830; UbiD. DR Pfam; PF01977; UbiD; 1. DR SUPFAM; SSF50475; SSF50475; 1. DR TIGRFAMs; TIGR03701; mena_SCO4490; 1. DR TIGRFAMs; TIGR00148; TIGR00148; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 616 Uncharacterized protein HP_0396. FT /FTId=PRO_0000157374. SQ SEQUENCE 616 AA; 70844 MW; 56808945252D7703 CRC64; MRDFLKLLKK HDELKIIDTP LEVDLEIAHL AYIEAKKPNG GKALLFTQPI RKEHDQIKTF GMPVLMNAFG SFKRLDLLLK TPIESLQQRM QAFLHFNAPK NFTEGLKVLK DLWDLRHIFP KKTTRPKDLI IKQDKEVNLL DLPVLKTWEK DGGAFITMGQ VYTQSLDHQK KNLGMYRLQV YDKNHLGLHW QIHKDSQLFF HEYAKAKVKM PVSIAIGGDL LYTWCATAPL PYGIYELMLY GFMRGKKARV MPCLSNSLSV PSDCDIVIEG FVDCEKLELE GPFGDHTGYY TPIEPYPVLE VKTISYKKDS IYLATVVGKP PLEDKYMGYL TERLFLPLLQ MNAPNLIEYY MPENGVFHNL ILAKIHTRYN AHAKQVMHAF WGVGQMSFVK HAIFVNEDAP NLRDTNAIIE YILENFSKEN ALISQGVCDA LDHASPEYAM GGKLGIDATS KSNTPYPTLL NDSALLALLQ DKMQNIVLLK QYYPHTRNPI CVISVEKKDK SVIELAKNLL GFEEHLRIVI FVEHASNDLN NPYMLLWRIV NNIDARRDIL TSKHCFFIDA TNKGVMDKHF REWPTETNCS MEVIENLKKK GLLKDFETLN QKFHLTHSFS THKEDL // ID Y567_HELPY Reviewed; 348 AA. AC O25291; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 84. DE RecName: Full=UPF0118 membrane protein HP_0567; GN OrderedLocusNames=HP_0567; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the UPF0118 (PerM) family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07623.1; -; Genomic_DNA. DR PIR; G64590; G64590. DR RefSeq; NP_207362.1; NC_000915.1. DR RefSeq; WP_000647330.1; NC_018939.1. DR ProteinModelPortal; O25291; -. DR STRING; 85962.HP0567; -. DR PaxDb; O25291; -. DR PRIDE; O25291; -. DR EnsemblBacteria; AAD07623; AAD07623; HP_0567. DR GeneID; 900232; -. DR KEGG; heo:C694_02925; -. DR KEGG; hpy:HP0567; -. DR PATRIC; 20592407; VBIHelPyl33062_0592. DR eggNOG; ENOG4105F4G; Bacteria. DR eggNOG; COG0628; LUCA. DR OMA; VIFEINF; -. DR OrthoDB; EOG6Z9B1T; -. DR BioCyc; HPY:HP0567-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR002549; AI-2E-like. DR PANTHER; PTHR21716; PTHR21716; 1. DR Pfam; PF01594; UPF0118; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 348 UPF0118 membrane protein HP_0567. FT /FTId=PRO_0000148315. FT TRANSMEM 6 26 Helical. {ECO:0000255}. FT TRANSMEM 27 47 Helical. {ECO:0000255}. FT TRANSMEM 56 76 Helical. {ECO:0000255}. FT TRANSMEM 143 163 Helical. {ECO:0000255}. FT TRANSMEM 194 214 Helical. {ECO:0000255}. FT TRANSMEM 224 244 Helical. {ECO:0000255}. FT TRANSMEM 266 286 Helical. {ECO:0000255}. FT TRANSMEM 300 320 Helical. {ECO:0000255}. SQ SEQUENCE 348 AA; 39838 MW; 707D729838D451B3 CRC64; MKAQYFFWIL FLIGFYWMIY LYQDFLMDAL IAGLLCVGFF QVKVFLDKRF FNVVSSFLCV LILASVLIVP LYFIVYKSSN IIFEINFEKF SALIKWLKGI ITENLSHFPT IHDGASKFLE NFSAASITGY LLKISSYVGR YSLKLITDAL FILGLLFFFF YYGERFYRYF LGVLPLGMNQ SKKIFEEVAG ILRIVLLTSL ITVILEGVAF GVMIVWFGHD GWSLGILYGL ASLVPAVGGA LIWIPIAIYE LYHGNVNEAI FIALYSILLI SVLIDSVIKP ILIVFIKKRI FKTTLKINEM LIFFSMIAGI SQFGFWGIIV GPTITAFFIA LLRLYENYFI QNEQKACE // ID Y664_HELPY Reviewed; 171 AA. AC P64663; O25375; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 47. DE RecName: Full=UPF0763 protein HP_0664 {ECO:0000255|HAMAP-Rule:MF_02110}; GN OrderedLocusNames=HP_0664; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UPF0763 family. {ECO:0000255|HAMAP- CC Rule:MF_02110}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07731.1; -; Genomic_DNA. DR PIR; H64602; H64602. DR RefSeq; NP_207458.1; NC_000915.1. DR RefSeq; WP_000413462.1; NC_018939.1. DR ProteinModelPortal; P64663; -. DR STRING; 85962.HP0664; -. DR PaxDb; P64663; -. DR PRIDE; P64663; -. DR EnsemblBacteria; AAD07731; AAD07731; HP_0664. DR GeneID; 900254; -. DR KEGG; heo:C694_03435; -. DR KEGG; hpy:HP0664; -. DR PATRIC; 20592613; VBIHelPyl33062_0695. DR eggNOG; ENOG4105T1H; Bacteria. DR eggNOG; ENOG4111YGV; LUCA. DR OMA; PWFGIDE; -. DR OrthoDB; EOG62K1WN; -. DR BioCyc; HPY:HP0664-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR HAMAP; MF_02110; UPF0763; 1. DR InterPro; IPR019724; UPF0763. DR Pfam; PF10788; DUF2603; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 171 UPF0763 protein HP_0664. FT /FTId=PRO_0000128694. SQ SEQUENCE 171 AA; 20110 MW; 74D7DA9681BAB200 CRC64; MEKLPKKRVS KTKSQKLIHS LTTQKNRAFL KKISANEMLL ELEKGAFKKN EAYFISDEED KNYVLVPDNV ISLLAENARK AFEARLRAEL ERDIITQAPI DFEDVREVSL QLLENLRQKD GNLPNINTLN FVKQIKKEHP NLFFNFDNMF KQPPFNENNF ENFDNSDEEN F // ID Y736_HELPY Reviewed; 369 AA. AC O25436; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 93. DE RecName: Full=Uncharacterized aminotransferase HP_0736; DE EC=2.6.1.-; GN OrderedLocusNames=HP_0736; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000250}; CC -!- SIMILARITY: Belongs to the class-V pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07782.1; -; Genomic_DNA. DR PIR; H64611; H64611. DR RefSeq; NP_207530.1; NC_000915.1. DR RefSeq; WP_000924085.1; NC_018939.1. DR ProteinModelPortal; O25436; -. DR DIP; DIP-3376N; -. DR IntAct; O25436; 5. DR MINT; MINT-175726; -. DR STRING; 85962.HP0736; -. DR PaxDb; O25436; -. DR PRIDE; O25436; -. DR EnsemblBacteria; AAD07782; AAD07782; HP_0736. DR GeneID; 900008; -. DR KEGG; heo:C694_03780; -. DR KEGG; hpy:HP0736; -. DR PATRIC; 20592759; VBIHelPyl33062_0768. DR eggNOG; ENOG4107UUH; Bacteria. DR eggNOG; COG0075; LUCA. DR OMA; WDTPAQV; -. DR OrthoDB; EOG6QZMN2; -. DR BioCyc; HPY:HP0736-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR InterPro; IPR024169; SP_NH2Trfase/AEP_transaminase. DR Pfam; PF00266; Aminotran_5; 1. DR PIRSF; PIRSF000524; SPT; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 3: Inferred from homology; KW Aminotransferase; Complete proteome; Pyridoxal phosphate; KW Reference proteome; Transferase. FT CHAIN 1 369 Uncharacterized aminotransferase HP_0736. FT /FTId=PRO_0000150341. FT MOD_RES 184 184 N6-(pyridoxal phosphate)lysine. FT {ECO:0000250}. SQ SEQUENCE 369 AA; 40984 MW; 562F2316EF38DD03 CRC64; MLLFTPGPVA INEEMRTSFS QPMPHHRTKD FEKIFQSVRE NLKKMTGLEE VLLLSSSGTG AMEASVISLC QKELLFVNAG KFGERFGKIA KAHSIKAHEL VYEWDTPAQV DEILSVLKAN PNIDAFCIQA CESSGGLRHP VEKIAQAIKE TNPNVFVIVD AITALGVEPL EITHVDALIG GSQKAFMLPP AMSLVALSQN AIERIEERNV GFYFNLKSEL KNQRNNTTSY TAPILHTLGL QRYFELVQNL GGFEALYRET KKAALATQKA VLALGLKIFP KSPSLSMTTI VNEHAKELRN LLKEKYQVQF AGGQEPYKDA LIRINHMGII PVYKSAYALN ALELALNDLD LREFDGVANA TFLKQYYGI // ID Y745_HELPY Reviewed; 327 AA. AC O25441; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 89. DE RecName: Full=Uncharacterized RNA pseudouridine synthase HP_0745; DE EC=5.4.99.-; DE AltName: Full=RNA pseudouridylate synthase; DE AltName: Full=RNA-uridine isomerase; GN OrderedLocusNames=HP_0745; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: RNA uridine = RNA pseudouridine. CC -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00182}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07795.1; -; Genomic_DNA. DR PIR; A64613; A64613. DR RefSeq; NP_207538.1; NC_000915.1. DR RefSeq; WP_001174316.1; NC_018939.1. DR ProteinModelPortal; O25441; -. DR DIP; DIP-3289N; -. DR IntAct; O25441; 2. DR MINT; MINT-165354; -. DR STRING; 85962.HP0745; -. DR PaxDb; O25441; -. DR PRIDE; O25441; -. DR EnsemblBacteria; AAD07795; AAD07795; HP_0745. DR GeneID; 898915; -. DR KEGG; heo:C694_03835; -. DR KEGG; hpy:HP0745; -. DR PATRIC; 20592779; VBIHelPyl33062_0778. DR eggNOG; ENOG4105C34; Bacteria. DR eggNOG; COG0564; LUCA. DR KO; K06180; -. DR OMA; TSQNGMD; -. DR OrthoDB; EOG6P070X; -. DR BioCyc; HPY:HP0745-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR Gene3D; 3.10.290.10; -; 1. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR006225; PsdUridine_synth_RluC/D. DR InterPro; IPR006224; PsdUridine_synth_RluC/D_CS. DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluD. DR InterPro; IPR002942; S4_RNA-bd. DR Pfam; PF00849; PseudoU_synth_2; 1. DR Pfam; PF01479; S4; 1. DR SMART; SM00363; S4; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR TIGRFAMs; TIGR00005; rluA_subfam; 1. DR PROSITE; PS01129; PSI_RLU; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; RNA-binding. FT CHAIN 1 327 Uncharacterized RNA pseudouridine FT synthase HP_0745. FT /FTId=PRO_0000162735. FT DOMAIN 12 79 S4 RNA-binding. {ECO:0000255|PROSITE- FT ProRule:PRU00182}. FT ACT_SITE 136 136 {ECO:0000250}. SQ SEQUENCE 327 AA; 37922 MW; 40E7F371C9E46117 CRC64; MQKVFIALTD HKRLDEFLAK ELQISKNQVL NLIKEGLVFC QKKEVKKGGL ALKEGDEITL LTPKITPKPL KKELDLEIEV IFEDEDLLVL NKPPNLVVHK ALSVKEPTLV DWLEFKNYEL SNLGLKERYG IVHRLDKDTS GGIVIAKNNF THVHLSEQLK TKMMGRYYIA LLSTPLKEEK MSVECYLTRN PNNRLKMIAL KAVKKEKSRY SKSEFISLLT SQNNLNLIGA KLFTGRTHQI RAHLEYLNRH IIGDNLYGLN GALPKEEIRI MLHAYLIEFK HPRSEQKLRF KVPLLKDMLE YLKKVFDKEN LDEVLDEEKI LHAFIAK // ID Y920_HELPY Reviewed; 230 AA. AC O25578; DT 14-AUG-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 91. DE RecName: Full=Uncharacterized protein HP_0920; GN OrderedLocusNames=HP_0920; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass CC membrane protein {ECO:0000305}. CC -!- SIMILARITY: Belongs to the BI1 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07964.1; -; Genomic_DNA. DR PIR; H64634; H64634. DR RefSeq; NP_207712.1; NC_000915.1. DR RefSeq; WP_001240277.1; NC_018939.1. DR ProteinModelPortal; O25578; -. DR DIP; DIP-3284N; -. DR IntAct; O25578; 2. DR MINT; MINT-186577; -. DR STRING; 85962.HP0920; -. DR PaxDb; O25578; -. DR PRIDE; O25578; -. DR EnsemblBacteria; AAD07964; AAD07964; HP_0920. DR GeneID; 899449; -. DR KEGG; heo:C694_04735; -. DR KEGG; hpy:HP0920; -. DR PATRIC; 20593141; VBIHelPyl33062_0956. DR eggNOG; ENOG4105HFZ; Bacteria. DR eggNOG; COG0670; LUCA. DR KO; K19416; -. DR OMA; KWAFFIA; -. DR OrthoDB; EOG6PZXBH; -. DR BioCyc; HPY:HP0920-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR006214; Bax_inhibitor_1-related. DR PANTHER; PTHR23291; PTHR23291; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix. FT CHAIN 1 230 Uncharacterized protein HP_0920. FT /FTId=PRO_0000179105. FT TRANSMEM 34 54 Helical. {ECO:0000255}. FT TRANSMEM 56 76 Helical. {ECO:0000255}. FT TRANSMEM 87 107 Helical. {ECO:0000255}. FT TRANSMEM 111 131 Helical. {ECO:0000255}. FT TRANSMEM 146 166 Helical. {ECO:0000255}. FT TRANSMEM 167 187 Helical. {ECO:0000255}. FT TRANSMEM 205 225 Helical. {ECO:0000255}. SQ SEQUENCE 230 AA; 25141 MW; ABC25577614F5030 CRC64; MALYDRANSR NAYAEDSLLR ESELVSFVKT TYKFFAGSLL LATIGALLGL MNFQAVVQYK WVFFIAEIAA FFGLMFSKSK PGLNLFMLFA FTSLSGVTLV PLLGMVIAKA GLGAIWQALG MTTIVFGLMS VYALKTKNDL ANMGKMLFIA LIVVVVCSLI NLFLGSPMFQ VVIAGASAIL FSLYIAYDTQ NIVKGMYDSP IDAAVSLYLD FLNVFISILQ IIGIFSDRDT // ID YBEY_HELPY Reviewed; 140 AA. AC O25775; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 97. DE RecName: Full=Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009}; GN Name=ybeY {ECO:0000255|HAMAP-Rule:MF_00009}; GN OrderedLocusNames=HP_1160; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved CC in late-stage 70S ribosome quality control and in maturation of CC the 3' terminus of the 16S rRNA. {ECO:0000255|HAMAP- CC Rule:MF_00009}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00009}; CC Note=Binds 1 zinc ion. {ECO:0000255|HAMAP-Rule:MF_00009}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00009}. CC -!- SIMILARITY: Belongs to the endoribonuclease YbeY family. CC {ECO:0000255|HAMAP-Rule:MF_00009}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08206.1; -; Genomic_DNA. DR PIR; H64664; H64664. DR RefSeq; NP_207951.1; NC_000915.1. DR RefSeq; WP_000889553.1; NC_018939.1. DR ProteinModelPortal; O25775; -. DR DIP; DIP-3492N; -. DR IntAct; O25775; 10. DR MINT; MINT-163906; -. DR STRING; 85962.HP1160; -. DR PaxDb; O25775; -. DR PRIDE; O25775; -. DR EnsemblBacteria; AAD08206; AAD08206; HP_1160. DR GeneID; 899920; -. DR KEGG; heo:C694_05990; -. DR KEGG; hpy:HP1160; -. DR PATRIC; 20593671; VBIHelPyl33062_1214. DR eggNOG; ENOG41080V7; Bacteria. DR eggNOG; COG0319; LUCA. DR KO; K07042; -. DR OMA; RGCDYAT; -. DR OrthoDB; EOG680X6D; -. DR BioCyc; HPY:HP1160-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.390.30; -; 1. DR HAMAP; MF_00009; Endoribonucl_YbeY; 1. DR InterPro; IPR023091; MetalPrtase_cat_dom_prd. DR InterPro; IPR002036; YbeY. DR InterPro; IPR020549; YbeY_CS. DR Pfam; PF02130; UPF0054; 1. DR TIGRFAMs; TIGR00043; TIGR00043; 1. DR PROSITE; PS01306; UPF0054; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Metal-binding; KW Nuclease; Reference proteome; Ribosome biogenesis; rRNA processing; KW Zinc. FT CHAIN 1 140 Endoribonuclease YbeY. FT /FTId=PRO_0000102467. FT METAL 100 100 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00009}. FT METAL 104 104 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00009}. FT METAL 110 110 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00009}. SQ SEQUENCE 140 AA; 15646 MW; 65E75D8550DD0489 CRC64; MLEIDNQTPL ESDFLLLEKI ANVLAPTQII ELVLVSDETI REINKDLRGC DYATDVLSFP LEAIPHTPLG SVVINAPLAQ TNALKLGHSL ENEIALLFIH GVLHLLGYDH EKDKGEQRQK ESELIKAFNL PLSLIERTQD // ID Y495_HELPY Reviewed; 86 AA. AC O25237; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 09-DEC-2015, entry version 81. DE RecName: Full=Uncharacterized protein HP_0495; GN OrderedLocusNames=HP_0495; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: To C.jejuni CJ0253. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07569.1; -; Genomic_DNA. DR PIR; G64581; G64581. DR RefSeq; NP_207292.1; NC_000915.1. DR RefSeq; WP_001138777.1; NC_018939.1. DR PDB; 2H9Z; NMR; -; A=1-86. DR PDB; 2JOQ; NMR; -; A=1-86. DR PDBsum; 2H9Z; -. DR PDBsum; 2JOQ; -. DR ProteinModelPortal; O25237; -. DR SMR; O25237; 1-86. DR DIP; DIP-3435N; -. DR IntAct; O25237; 7. DR MINT; MINT-165537; -. DR STRING; 85962.HP0495; -. DR PaxDb; O25237; -. DR PRIDE; O25237; -. DR DNASU; 899257; -. DR EnsemblBacteria; AAD07569; AAD07569; HP_0495. DR GeneID; 899257; -. DR KEGG; heo:C694_02545; -. DR KEGG; hpy:HP0495; -. DR PATRIC; 20592265; VBIHelPyl33062_0521. DR eggNOG; ENOG41068HQ; Bacteria. DR eggNOG; ENOG410XVPC; LUCA. DR OMA; DYRVIMT; -. DR OrthoDB; EOG6BGP43; -. DR BioCyc; HPY:HP0495-MONOMER; -. DR EvolutionaryTrace; O25237; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.70.1460; -; 1. DR InterPro; IPR007454; UPF0250. DR InterPro; IPR027471; YbeD-like. DR Pfam; PF04359; DUF493; 1. DR SUPFAM; SSF117991; SSF117991; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome. FT CHAIN 1 86 Uncharacterized protein HP_0495. FT /FTId=PRO_0000128686. FT STRAND 14 22 {ECO:0000244|PDB:2H9Z}. FT HELIX 28 33 {ECO:0000244|PDB:2H9Z}. FT TURN 36 38 {ECO:0000244|PDB:2JOQ}. FT STRAND 39 42 {ECO:0000244|PDB:2H9Z}. FT STRAND 55 62 {ECO:0000244|PDB:2H9Z}. FT HELIX 66 76 {ECO:0000244|PDB:2H9Z}. FT STRAND 82 85 {ECO:0000244|PDB:2H9Z}. SQ SEQUENCE 86 AA; 10193 MW; 0CD538F9A10FEDB1 CRC64; MPSDSKKPTI IYPCLWDYRV IMTTKDTSTL KELLETYQRP FKLEFKNTSK NAKFYSFNVS MEVSNESERN EIFQKISQLD KVVQTL // ID Y889_HELPY Reviewed; 326 AA. AC O05731; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 01-JUL-1997, sequence version 1. DT 11-NOV-2015, entry version 96. DE RecName: Full=Probable iron chelatin transport system permease protein HP_0889; GN OrderedLocusNames=HP_0889; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=ATCC 49503 / 60190; RX PubMed=9139899; RA Cao P., Cover T.L.; RT "High-level genetic diversity in the vapD chromosomal region of RT Helicobacter pylori."; RL J. Bacteriol. 179:2852-2856(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Part of a binding-protein-dependent transport system for CC an iron chelatin; probably responsible for the translocation of CC the substrate across the membrane. {ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane CC protein. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. FecCD subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U94318; AAC45244.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07937.1; -; Genomic_DNA. DR PIR; A64631; A64631. DR RefSeq; NP_207682.1; NC_000915.1. DR RefSeq; WP_000921458.1; NC_018939.1. DR ProteinModelPortal; O05731; -. DR DIP; DIP-3475N; -. DR IntAct; O05731; 3. DR MINT; MINT-163231; -. DR STRING; 85962.HP0889; -. DR PaxDb; O05731; -. DR PRIDE; O05731; -. DR EnsemblBacteria; AAD07937; AAD07937; HP_0889. DR GeneID; 899417; -. DR KEGG; heo:C694_04565; -. DR KEGG; hpy:HP0889; -. DR PATRIC; 20593067; VBIHelPyl33062_0921. DR eggNOG; ENOG4108I9K; Bacteria. DR eggNOG; COG0609; LUCA. DR KO; K02015; -. DR OMA; EEWQEVC; -. DR OrthoDB; EOG61ZTDC; -. DR BioCyc; HPY:HP0889-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0006811; P:ion transport; IEA:UniProtKB-KW. DR GO; GO:0055072; P:iron ion homeostasis; IEA:UniProtKB-KW. DR Gene3D; 1.10.3470.10; -; 1. DR InterPro; IPR029022; ABC_BtuC-like. DR InterPro; IPR000522; ABC_transptr_permAse. DR PANTHER; PTHR30472; PTHR30472; 1. DR Pfam; PF01032; FecCD; 1. DR SUPFAM; SSF81345; SSF81345; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Ion transport; KW Iron; Iron transport; Membrane; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 326 Probable iron chelatin transport system FT permease protein HP_0889. FT /FTId=PRO_0000060283. FT TRANSMEM 7 27 Helical. {ECO:0000255}. FT TRANSMEM 64 84 Helical. {ECO:0000255}. FT TRANSMEM 91 111 Helical. {ECO:0000255}. FT TRANSMEM 113 133 Helical. {ECO:0000255}. FT TRANSMEM 142 162 Helical. {ECO:0000255}. FT TRANSMEM 164 184 Helical. {ECO:0000255}. FT TRANSMEM 187 207 Helical. {ECO:0000255}. FT TRANSMEM 241 261 Helical. {ECO:0000255}. FT TRANSMEM 275 295 Helical. {ECO:0000255}. FT TRANSMEM 301 321 Helical. {ECO:0000255}. SQ SEQUENCE 326 AA; 34624 MW; 128BCB142D429D1C CRC64; MLKTYHIALA CVILAVVVLL FGGESLSLEE WQEVCLNVKN HFLHNEELSS LSIIILEIRL PRVILALLVG ASLSGSGVVM QTIFRNPLVD PFLLGISSGA MLGVAMAIAV VESNIAILAF FGAILASLAV LAMNRVLGNS VLSLVLSGVV LSAFLSALAG AIKFFVIPQK AQAIVVWLLG SLSLSSYKDC LIAFIGLSLG FIPLFLLRWR INLLSLSDAQ SLSLGINPVL LRSLCLVCVS VASALAVSVS GTIGWIGLVI PHVARLFFGA NLQKLLLSSL LMGAFFLLLA DVVAKTITPY DLPVGIATSV LGAPFFLWLL FRTRGV // ID Y823_HELPY Reviewed; 114 AA. AC O25499; DT 25-MAR-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=UPF0102 protein HP_0823; GN OrderedLocusNames=HP_0823; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UPF0102 family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07870.1; -; Genomic_DNA. DR PIR; G64622; G64622. DR RefSeq; NP_207616.1; NC_000915.1. DR RefSeq; WP_001211699.1; NC_018939.1. DR ProteinModelPortal; O25499; -. DR DIP; DIP-3532N; -. DR IntAct; O25499; 8. DR MINT; MINT-161390; -. DR STRING; 85962.HP0823; -. DR PaxDb; O25499; -. DR PRIDE; O25499; -. DR DNASU; 898897; -. DR EnsemblBacteria; AAD07870; AAD07870; HP_0823. DR GeneID; 898897; -. DR KEGG; heo:C694_04215; -. DR KEGG; hpy:HP0823; -. DR PATRIC; 20592935; VBIHelPyl33062_0856. DR eggNOG; ENOG41082UM; Bacteria. DR eggNOG; COG0792; LUCA. DR KO; K07460; -. DR OMA; HKQKGLK; -. DR OrthoDB; EOG6PP9TH; -. DR BioCyc; HPY:HP0823-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR HAMAP; MF_00048; UPF0102; 1. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR InterPro; IPR003509; UPF0102. DR Pfam; PF02021; UPF0102; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 114 UPF0102 protein HP_0823. FT /FTId=PRO_0000167356. SQ SEQUENCE 114 AA; 13168 MW; 4E178EFD74C14B48 CRC64; MRFLNNKHRE KGLKAEEEAC GFLKSLGFEM VERNFFSQFG EIDIIALKKG VLHFIEVKSG ENFDPIYAIT PSKLKKMIKT IRCYLSQKDP NSDFCIDALI VKNGKFELLE NITF // ID Y956_HELPY Reviewed; 242 AA. AC O25610; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 85. DE RecName: Full=Uncharacterized RNA pseudouridine synthase HP_0956; DE EC=5.4.99.-; DE AltName: Full=RNA pseudouridylate synthase; DE AltName: Full=RNA-uridine isomerase; GN OrderedLocusNames=HP_0956; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: RNA uridine = RNA pseudouridine. CC -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family. CC {ECO:0000305}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. CC {ECO:0000255|PROSITE-ProRule:PRU00182}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07999.1; -; Genomic_DNA. DR PIR; D64639; D64639. DR RefSeq; NP_207748.1; NC_000915.1. DR RefSeq; WP_000409617.1; NC_018939.1. DR ProteinModelPortal; O25610; -. DR IntAct; O25610; 2. DR STRING; 85962.HP0956; -. DR PaxDb; O25610; -. DR PRIDE; O25610; -. DR EnsemblBacteria; AAD07999; AAD07999; HP_0956. DR GeneID; 899489; -. DR KEGG; heo:C694_04925; -. DR KEGG; hpy:HP0956; -. DR PATRIC; 20593225; VBIHelPyl33062_0994. DR eggNOG; ENOG4105D3G; Bacteria. DR eggNOG; COG0564; LUCA. DR KO; K06179; -. DR OMA; NERMANI; -. DR OrthoDB; EOG6P070X; -. DR BioCyc; HPY:HP0956-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR006224; PsdUridine_synth_RluC/D_CS. DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluD. DR InterPro; IPR002942; S4_RNA-bd. DR Pfam; PF00849; PseudoU_synth_2; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR PROSITE; PS01129; PSI_RLU; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; RNA-binding. FT CHAIN 1 242 Uncharacterized RNA pseudouridine FT synthase HP_0956. FT /FTId=PRO_0000162737. FT DOMAIN 2 62 S4 RNA-binding. {ECO:0000255|PROSITE- FT ProRule:PRU00182}. FT ACT_SITE 93 93 {ECO:0000250}. SQ SEQUENCE 242 AA; 27457 MW; BB94C062C7BE8165 CRC64; MEKAYKILSV QENISHKKAK ALIDSGLVSI GGKKLMVARK ELPKNTHFSV QKVEKPSVIF EDENILALFK PPFIESYDLA SFFKGWALLH RLDKETSGVV LLVKENSEFH LKAKKAFKDR AVKKEYLALT QGIIEEEREI NAPILTFKTT KAFSKISKKG QEAVTIITPL KIINKKTLLK VGIKTGRTHQ IRVHLKHINH PIIGDTLYNN EPSLAKRLML HAHKIALLGY EFEAIAPKEF EI // ID YHIT_HELPY Reviewed; 104 AA. AC P64382; P56147; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 11-NOV-2015, entry version 62. DE RecName: Full=Uncharacterized HIT-like protein HP_0404; GN OrderedLocusNames=HP_0404; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 HIT domain. {ECO:0000255|PROSITE- CC ProRule:PRU00464}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07473.1; -; Genomic_DNA. DR PIR; D64570; D64570. DR RefSeq; NP_207202.1; NC_000915.1. DR RefSeq; WP_001100349.1; NC_018939.1. DR PDB; 4ZGL; X-ray; 2.95 A; A/B/C/D/E/F/G/H/I/J=1-104. DR PDBsum; 4ZGL; -. DR ProteinModelPortal; P64382; -. DR STRING; 85962.HP0404; -. DR PaxDb; P64382; -. DR PRIDE; P64382; -. DR EnsemblBacteria; AAD07473; AAD07473; HP_0404. DR GeneID; 898890; -. DR KEGG; heo:C694_02055; -. DR KEGG; hpy:HP0404; -. DR PATRIC; 20592049; VBIHelPyl33062_0418. DR eggNOG; ENOG4105K59; Bacteria. DR eggNOG; COG0537; LUCA. DR KO; K02503; -. DR OMA; CNPYPDG; -. DR OrthoDB; EOG69GZSV; -. DR BioCyc; HPY:HP0404-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.30.428.10; -; 1. DR InterPro; IPR019808; Histidine_triad_CS. DR InterPro; IPR001310; Histidine_triad_HIT. DR InterPro; IPR011146; HIT-like. DR PANTHER; PTHR23089; PTHR23089; 1. DR Pfam; PF01230; HIT; 1. DR PRINTS; PR00332; HISTRIAD. DR SUPFAM; SSF54197; SSF54197; 1. DR PROSITE; PS00892; HIT_1; 1. DR PROSITE; PS51084; HIT_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Reference proteome. FT CHAIN 1 104 Uncharacterized HIT-like protein HP_0404. FT /FTId=PRO_0000109818. FT DOMAIN 3 104 HIT. {ECO:0000255|PROSITE- FT ProRule:PRU00464}. FT MOTIF 93 97 Histidine triad motif. FT HELIX 3 8 {ECO:0000244|PDB:4ZGL}. FT STRAND 16 19 {ECO:0000244|PDB:4ZGL}. FT STRAND 21 27 {ECO:0000244|PDB:4ZGL}. FT STRAND 32 43 {ECO:0000244|PDB:4ZGL}. FT HELIX 48 50 {ECO:0000244|PDB:4ZGL}. FT HELIX 53 69 {ECO:0000244|PDB:4ZGL}. FT TURN 73 75 {ECO:0000244|PDB:4ZGL}. FT STRAND 77 84 {ECO:0000244|PDB:4ZGL}. FT HELIX 85 87 {ECO:0000244|PDB:4ZGL}. FT STRAND 91 93 {ECO:0000244|PDB:4ZGL}. FT STRAND 96 100 {ECO:0000244|PDB:4ZGL}. SQ SEQUENCE 104 AA; 11855 MW; 00E6C9E47E3C3566 CRC64; MNVFEKIIQG EIPCSKILEN ERFLSFYDIN PKAKVHALVI PKQSIQDFNG ITPELMAQMT SFIFEVVEKL GIKEKGYKLL TNVGKNAGQE VMHLHFHILS GDKH // ID Y944_HELPY Reviewed; 125 AA. AC O25598; DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE RecName: Full=RutC family protein HP_0944; GN OrderedLocusNames=HP_0944; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the RutC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07989.1; -; Genomic_DNA. DR PIR; H64637; H64637. DR RefSeq; NP_207736.1; NC_000915.1. DR RefSeq; WP_000665817.1; NC_018939.1. DR ProteinModelPortal; O25598; -. DR DIP; DIP-3595N; -. DR IntAct; O25598; 8. DR MINT; MINT-160406; -. DR STRING; 85962.HP0944; -. DR PaxDb; O25598; -. DR PRIDE; O25598; -. DR EnsemblBacteria; AAD07989; AAD07989; HP_0944. DR GeneID; 899473; -. DR KEGG; heo:C694_04860; -. DR KEGG; hpy:HP0944; -. DR PATRIC; 20593191; VBIHelPyl33062_0981. DR eggNOG; ENOG4105KME; Bacteria. DR eggNOG; COG0251; LUCA. DR OMA; GSYFKEP; -. DR OrthoDB; EOG6QVRPF; -. DR BioCyc; HPY:HP0944-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.1330.40; -; 1. DR InterPro; IPR013813; Endoribo_LPSP/chorism_mut-like. DR InterPro; IPR006056; RidA. DR InterPro; IPR019897; RidA_CS. DR InterPro; IPR006175; YjgF/YER057c/UK114. DR PANTHER; PTHR11803; PTHR11803; 1. DR Pfam; PF01042; Ribonuc_L-PSP; 1. DR SUPFAM; SSF55298; SSF55298; 1. DR TIGRFAMs; TIGR00004; TIGR00004; 1. DR PROSITE; PS01094; UPF0076; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 125 RutC family protein HP_0944. FT /FTId=PRO_0000170336. SQ SEQUENCE 125 AA; 13373 MW; 94218638ABB85CB8 CRC64; MKEVIHSTLA PKAIGPYSQA IATNDLVFVS GQLGIDVSTG EFKGADIHSQ TTQSMENIKA ILKEAGLGMD SVVKTTILLK SLDDFAVVNG IYGSYFTEPY PARATFQVAK LPKDALVEIE AIAIK // ID Y945_HELPY Reviewed; 98 AA. AC O25599; DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=Putative uncharacterized protein HP_0945; GN OrderedLocusNames=HP_0945; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CAUTION: Could be the product of a pseudogene. It is encoded in CC the reverse strand of the region coding for trl, a gene which has CC been shown to exist in a number of H.pylori strains. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07992.1; -; Genomic_DNA. DR PIR; A64638; A64638. DR ProteinModelPortal; O25599; -. DR STRING; 85962.HP0945; -. DR PaxDb; O25599; -. DR PRIDE; O25599; -. DR EnsemblBacteria; AAD07992; AAD07992; HP_0945. DR OMA; LEYCASF; -. DR OrthoDB; EOG625K6G; -. DR BioCyc; HPY:HP0945-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 5: Uncertain; KW Complete proteome; Reference proteome. FT CHAIN 1 98 Putative uncharacterized protein HP_0945. FT /FTId=PRO_0000128702. SQ SEQUENCE 98 AA; 10855 MW; 115F9A87536512EA CRC64; MVYLPTIPKK LFVSRLTILI LVTPPLLAAF STEQLPAATR LKTLQQLARP SLEYCASFPE TGIVTIVIRV PVGEEDAQPL IKTPKHTLAN FKRNLKSS // ID YBGC_HELPY Reviewed; 133 AA. AC P94842; O25238; DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot. DT 15-JUL-1999, sequence version 2. DT 16-MAR-2016, entry version 105. DE RecName: Full=Acyl-CoA thioesterase YbgC; DE EC=3.1.2.-; GN Name=ybgC; OrderedLocusNames=HP_0496; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=DSM 4867 / CCUG 17874 / NCTC 11638; RA Clairoux N., Boissinot M.; RT "Sequence of the dihydrodipicolinate reductase gene (dapB) from RT Helicobacter pylori and complementation in Escherichia coli."; RL Submitted (OCT-1996) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [3] RP INTERACTION WITH CAGA. RX PubMed=15133060; DOI=10.1074/mcp.M400048-MCP200; RA Terradot L., Durnell N., Li M., Li M., Ory J., Labigne A., Legrain P., RA Colland F., Waksman G.; RT "Biochemical characterization of protein complexes from the RT Helicobacter pylori protein interaction map: strategies for complex RT formation and evidence for novel interactions within type IV secretion RT systems."; RL Mol. Cell. Proteomics 3:809-819(2004). RN [4] RP X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS), FUNCTION, AND SUBUNIT. RX PubMed=18338382; DOI=10.1002/prot.22014; RA Angelini A., Cendron L., Goncalves S., Zanotti G., Terradot L.; RT "Structural and enzymatic characterization of HP0496, a YbgC RT thioesterase from Helicobacter pylori."; RL Proteins 72:1212-1221(2008). CC -!- FUNCTION: Thioesterase that may be involved in phospholipid CC metabolism. Displays acyl-CoA thioesterase activity with lauroyl- CC CoA (C12:0), myristoyl-CoA (C14:0), palmitoyl-CoA (C16:0), CC stearoyl-CoA (C18:0) and benzoyl-CoA, catalyzing the hydrolysis of CC the thioester bond. Has low activity with butyryl-CoA and CC octanoyl-CoA. {ECO:0000269|PubMed:18338382}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=200 uM for benzoyl-CoA; CC KM=210 uM for stearoyl-CoA; CC KM=570 uM for palmitoyl-CoA; CC KM=240 uM for myristoyl-CoA; CC KM=160 uM for lauroyl-CoA; CC KM=40 uM for octanoyl-CoA; CC KM=27 uM for butyryl-CoA; CC Note=kcat is 0.028 sec(-1) with benzoyl-CoA, 0.034 sec(-1) with CC stearoyl-CoA, 0.045 sec(-1) with palmitoyl-CoA, 0.024 sec(-1) CC with myristoyl-CoA, 0.015 sec(-1) with lauroyl-CoA and 0.0013 CC sec(-1) with octanoyl-CoA.; CC -!- SUBUNIT: Homotetramer. May interact with CagA. CC {ECO:0000269|PubMed:18338382}. CC -!- INTERACTION: CC P55980:cagA; NbExp=2; IntAct=EBI-528090, EBI-528104; CC -!- SIMILARITY: Belongs to the 4-hydroxybenzoyl-CoA thioesterase CC family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U75328; AAB39716.1; -; Genomic_DNA. DR EMBL; AE000511; AAD07561.1; -; Genomic_DNA. DR PIR; H64581; H64581. DR RefSeq; NP_207293.1; NC_000915.1. DR RefSeq; WP_001203797.1; NC_018939.1. DR PDB; 2PZH; X-ray; 1.70 A; A/B/C/D=1-133. DR PDBsum; 2PZH; -. DR ProteinModelPortal; P94842; -. DR SMR; P94842; 1-132. DR DIP; DIP-3437N; -. DR IntAct; P94842; 1. DR MINT; MINT-167425; -. DR STRING; 85962.HP0496; -. DR PaxDb; P94842; -. DR PRIDE; P94842; -. DR EnsemblBacteria; AAD07561; AAD07561; HP_0496. DR GeneID; 900055; -. DR KEGG; heo:C694_02550; -. DR KEGG; hpy:HP0496; -. DR PATRIC; 20592267; VBIHelPyl33062_0522. DR eggNOG; ENOG4107YD3; Bacteria. DR eggNOG; COG0824; LUCA. DR KO; K07107; -. DR OMA; RIVDCNG; -. DR OrthoDB; EOG6JQH7N; -. DR BioCyc; HPY:HP0496-MONOMER; -. DR EvolutionaryTrace; P94842; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0006629; P:lipid metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR008272; HB-CoA_thioesterase_AS. DR InterPro; IPR029069; HotDog_dom. DR InterPro; IPR006683; Thioestr_dom. DR InterPro; IPR006684; YbgC/YbaW. DR Pfam; PF03061; 4HBT; 1. DR PIRSF; PIRSF003230; YbgC; 1. DR SUPFAM; SSF54637; SSF54637; 1. DR TIGRFAMs; TIGR00051; TIGR00051; 1. DR PROSITE; PS01328; 4HBCOA_THIOESTERASE; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Hydrolase; Lipid metabolism; KW Reference proteome. FT CHAIN 1 133 Acyl-CoA thioesterase YbgC. FT /FTId=PRO_0000087767. FT ACT_SITE 11 11 {ECO:0000255|PROSITE-ProRule:PRU10041}. FT CONFLICT 133 133 I -> V (in Ref. 1; AAB39716). FT {ECO:0000305}. FT STRAND 1 4 {ECO:0000244|PDB:2PZH}. FT HELIX 7 9 {ECO:0000244|PDB:2PZH}. FT STRAND 14 16 {ECO:0000244|PDB:2PZH}. FT HELIX 20 34 {ECO:0000244|PDB:2PZH}. FT TURN 35 37 {ECO:0000244|PDB:2PZH}. FT STRAND 40 42 {ECO:0000244|PDB:2PZH}. FT STRAND 45 56 {ECO:0000244|PDB:2PZH}. FT STRAND 65 75 {ECO:0000244|PDB:2PZH}. FT STRAND 77 90 {ECO:0000244|PDB:2PZH}. FT STRAND 100 112 {ECO:0000244|PDB:2PZH}. FT TURN 114 116 {ECO:0000244|PDB:2PZH}. FT HELIX 124 131 {ECO:0000244|PDB:2PZH}. SQ SEQUENCE 133 AA; 15596 MW; 18C969BB96B802F9 CRC64; MRCRVYYEDT DSEGVVYHAN YLKYCERARS EFFFKQNVLP ENEEGVFVIR SIKADFFTPA SLGQVLEIRT QIKELRKVFV VLFQEIYCIQ NASLEPMKPF KVFASEIKFG FVNRSTYSPI AIPKLFKELL NAI // ID YIDD_HELPY Reviewed; 117 AA. AC O25988; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE RecName: Full=Putative membrane protein insertion efficiency factor {ECO:0000255|HAMAP-Rule:MF_00386}; GN OrderedLocusNames=HP_1449; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Could be involved in insertion of integral membrane CC proteins into the membrane. {ECO:0000255|HAMAP-Rule:MF_00386}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_00386}; Peripheral membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00386}; Cytoplasmic side {ECO:0000255|HAMAP- CC Rule:MF_00386}. CC -!- SIMILARITY: Belongs to the UPF0161 family. {ECO:0000255|HAMAP- CC Rule:MF_00386}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08490.1; -; Genomic_DNA. DR PIR; A64701; A64701. DR RefSeq; NP_208240.1; NC_000915.1. DR RefSeq; WP_001245509.1; NC_018939.1. DR ProteinModelPortal; O25988; -. DR DIP; DIP-3739N; -. DR IntAct; O25988; 3. DR MINT; MINT-168679; -. DR STRING; 85962.HP1449; -. DR PaxDb; O25988; -. DR PRIDE; O25988; -. DR DNASU; 899844; -. DR EnsemblBacteria; AAD08490; AAD08490; HP_1449. DR GeneID; 899844; -. DR KEGG; heo:C694_07505; -. DR KEGG; hpy:HP1449; -. DR PATRIC; 20594305; VBIHelPyl33062_1521. DR eggNOG; ENOG4108512; Bacteria. DR eggNOG; COG0759; LUCA. DR OMA; RILKCNQ; -. DR OrthoDB; EOG61ZTN6; -. DR BioCyc; HPY:HP1449-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR HAMAP; MF_00386; UPF0161_YidD; 1. DR InterPro; IPR002696; Membr_insert_effic_factor. DR Pfam; PF01809; Haemolytic; 1. DR ProDom; PD004225; DUF37; 1. DR SMART; SM01234; Haemolytic; 1. DR TIGRFAMs; TIGR00278; TIGR00278; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; KW Reference proteome. FT CHAIN 1 117 Putative membrane protein insertion FT efficiency factor. FT /FTId=PRO_0000171829. SQ SEQUENCE 117 AA; 13378 MW; 4885AE4FB0EDE0CC CRC64; MRNNKTPFLS AIFTASIRGY QRFFSAFTPS SCRFYPTCSN YALWLLCFES PLSAMGKIAI RILSCNPFCS GGIAYPTTRL KRPSLIQSHK DSNRNFKTIT FWLVPTKSHA TYYIIKV // ID YIDC_HELPY Reviewed; 547 AA. AC O25989; DT 21-NOV-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 87. DE RecName: Full=Membrane protein insertase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; DE AltName: Full=Foldase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; DE AltName: Full=Membrane integrase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; DE AltName: Full=Membrane protein YidC {ECO:0000255|HAMAP-Rule:MF_01810}; GN Name=yidC {ECO:0000255|HAMAP-Rule:MF_01810}; GN OrderedLocusNames=HP_1450; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Required for the insertion and/or proper folding and/or CC complex formation of integral membrane proteins into the membrane. CC Involved in integration of membrane proteins that insert both CC dependently and independently of the Sec translocase complex, as CC well as at least some lipoproteins. Aids folding of multispanning CC membrane proteins. {ECO:0000255|HAMAP-Rule:MF_01810}. CC -!- SUBUNIT: Interacts with the Sec translocase complex via SecD. CC Specifically interacts with transmembrane segments of nascent CC integral membrane proteins during membrane integration. CC {ECO:0000255|HAMAP-Rule:MF_01810}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000255|HAMAP- CC Rule:MF_01810}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_01810}. CC -!- SIMILARITY: Belongs to the OXA1/ALB3/YidC family. Type 1 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01810}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08491.1; -; Genomic_DNA. DR PIR; B64701; B64701. DR RefSeq; NP_208241.1; NC_000915.1. DR RefSeq; WP_000360153.1; NC_018939.1. DR ProteinModelPortal; O25989; -. DR DIP; DIP-3087N; -. DR IntAct; O25989; 3. DR MINT; MINT-183737; -. DR STRING; 85962.HP1450; -. DR PaxDb; O25989; -. DR PRIDE; O25989; -. DR DNASU; 899843; -. DR EnsemblBacteria; AAD08491; AAD08491; HP_1450. DR GeneID; 899843; -. DR KEGG; heo:C694_07510; -. DR KEGG; hpy:HP1450; -. DR PATRIC; 20594307; VBIHelPyl33062_1522. DR eggNOG; ENOG4105DHW; Bacteria. DR eggNOG; COG0706; LUCA. DR KO; K03217; -. DR OMA; YKGMVSM; -. DR OrthoDB; EOG6X6RF2; -. DR BioCyc; HPY:HP1450-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051205; P:protein insertion into membrane; IEA:InterPro. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR HAMAP; MF_01810; YidC_type1; 1. DR InterPro; IPR019998; Membr_insert_YidC. DR InterPro; IPR028055; Membr_insert_YidC/Oxa1_C. DR InterPro; IPR028053; Membr_insert_YidC_N. DR InterPro; IPR001708; Membrane_insert_OXA1/ALB3/YidC. DR PANTHER; PTHR12428; PTHR12428; 1. DR Pfam; PF02096; 60KD_IMP; 1. DR Pfam; PF14849; YidC_periplas; 1. DR PRINTS; PR01900; YIDCPROTEIN. DR TIGRFAMs; TIGR03593; yidC_nterm; 1. DR TIGRFAMs; TIGR03592; yidC_oxa1_cterm; 1. PE 3: Inferred from homology; KW Cell inner membrane; Cell membrane; Chaperone; Complete proteome; KW Membrane; Protein transport; Reference proteome; Transmembrane; KW Transmembrane helix; Transport. FT CHAIN 1 547 Membrane protein insertase YidC. FT /FTId=PRO_0000124719. FT TRANSMEM 8 28 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. FT TRANSMEM 325 345 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. FT TRANSMEM 348 368 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. FT TRANSMEM 414 434 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. FT TRANSMEM 449 469 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. FT TRANSMEM 495 515 Helical. {ECO:0000255|HAMAP- FT Rule:MF_01810}. SQ SEQUENCE 547 AA; 62584 MW; 3E5D32C3D3051F93 CRC64; MDKNNNNLRL ILAIALSFLF IALYSYFFQK PNKTTTQTTK QETTNNHTAT SPNAPNAQHF STTQTTPQEN LLSTISFEHA RIEIDSLGRI KQVYLKDKKY LTPKQKGFLE HVGHLFSSKE NAQPPLKELP LLAADKLKPL EVRFLDPTLN NKAFNTPYSA SKTTLGPNEQ LVLTQDLGTL SIIKTLTFYD DLHYDLKIAF KSPNNLIPSY VITNGYRPVA DLDSYTFSGV LLENSDKKIE KIEDKDAKEI KRFSNTLFLS SVDRYFTTLL FTKDPQGFEA LIDSEIGTKN PLGFISLKNE ANLHGYIGPK DYRSLKAISP MLTDVIEYGL ITFFAKGVFV LLDYLYQFVG NWGWAIILLT IIVRIILYPL SYKGMVSMQK LKELAPKMKE LQEKYKGEPQ KLQAHMMQLY KKHGANPLGG CLPLILQIPV FFAIYRVLYN AVELKSSEWI LWIHDLSIMD PYFILPLLMG ASMYWHQSVT PNTMTDPMQA KIFKLLPLLF TIFLITFPAG LVLYWTTNNI LSVLQQLIIN KVLENKKRMH AQNKKEH // ID YLXH_HELPY Reviewed; 294 AA. AC O25678; DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 11-NOV-2015, entry version 81. DE RecName: Full=Flagellum site-determining protein YlxH; GN Name=ylxH; OrderedLocusNames=HP_1034; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] RP FUNCTION, AND DISRUPTION PHENOTYPE. RC STRAIN=11A; RX PubMed=15361076; DOI=10.1111/j.1083-4389.2004.00268.x; RA van Amsterdam K., van der Ende A.; RT "Helicobacter pylori HP1034 (ylxH) is required for motility."; RL Helicobacter 9:387-395(2004). CC -!- FUNCTION: Involved in the placement and assembly of flagella. CC {ECO:0000269|PubMed:15361076}. CC -!- DISRUPTION PHENOTYPE: Non-motile, has no flagella, and has reduced CC expression of FlaA. {ECO:0000269|PubMed:15361076}. CC -!- SIMILARITY: Belongs to the ParA family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08077.1; -; Genomic_DNA. DR PIR; B64649; B64649. DR RefSeq; NP_207824.1; NC_000915.1. DR RefSeq; WP_001064464.1; NC_018939.1. DR ProteinModelPortal; O25678; -. DR DIP; DIP-3249N; -. DR IntAct; O25678; 12. DR MINT; MINT-184070; -. DR STRING; 85962.HP1034; -. DR PaxDb; O25678; -. DR PRIDE; O25678; -. DR EnsemblBacteria; AAD08077; AAD08077; HP_1034. DR GeneID; 899569; -. DR KEGG; heo:C694_05350; -. DR KEGG; hpy:HP1034; -. DR PATRIC; 20593405; VBIHelPyl33062_1083. DR eggNOG; ENOG4107R21; Bacteria. DR eggNOG; COG0455; LUCA. DR KO; K04562; -. DR OMA; RKQKLIV; -. DR OrthoDB; EOG6N680B; -. DR BioCyc; HPY:HP1034-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom. DR InterPro; IPR025501; MinD. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01656; CbiA; 1. DR PIRSF; PIRSF003092; MinD; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW ATP-binding; Bacterial flagellum biogenesis; Complete proteome; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 294 Flagellum site-determining protein YlxH. FT /FTId=PRO_0000419250. FT NP_BIND 35 42 ATP. {ECO:0000255}. SQ SEQUENCE 294 AA; 32039 MW; 1A9F870C3FAC2C37 CRC64; MNNQASRLDN LMNIKNPKSF FDNKGNTKFI AITSGKGGVG KSNISANLAY SLYKKGYKVG VFDADIGLAN LDVIFGVKTH KNILHALKGE AKLQEIICEI EPGLCLIPGD SGEEILKYIS GAEALDQFVD EEGVLSSLDY IVVDTGAGIG ATTQAFLNAS DCVVIVTTPD PSAITDAYAC IKINSKNKDE LFLIANMVAQ PKEGRATYER LFKVAKNNIA SLELHYLGAI ENSSLLKRYV RERKILRKIA PNDLFSQSID QIAGLLVSKL ETGALEIPKE GLKSFFKRLL KYLG // ID YQGF_HELPY Reviewed; 134 AA. AC O25101; DT 16-JUN-2003, integrated into UniProtKB/Swiss-Prot. DT 01-JAN-1998, sequence version 1. DT 20-JAN-2016, entry version 89. DE RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00651}; GN OrderedLocusNames=HP_0334; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., RA Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., RA Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., RA Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., RA Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., RA Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., RA Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., RA Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end CC of pre-16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00651}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00651}. CC -!- SIMILARITY: Belongs to the YqgF nuclease family. CC {ECO:0000255|HAMAP-Rule:MF_00651}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07403.1; -; Genomic_DNA. DR PIR; F64561; F64561. DR RefSeq; NP_207132.1; NC_000915.1. DR RefSeq; WP_000599146.1; NC_018939.1. DR ProteinModelPortal; O25101; -. DR IntAct; O25101; 1. DR STRING; 85962.HP0334; -. DR PaxDb; O25101; -. DR PRIDE; O25101; -. DR EnsemblBacteria; AAD07403; AAD07403; HP_0334. DR GeneID; 898855; -. DR KEGG; heo:C694_01690; -. DR KEGG; hpy:HP0334; -. DR PATRIC; 20591903; VBIHelPyl33062_0348. DR eggNOG; ENOG4105GSH; Bacteria. DR eggNOG; COG0816; LUCA. DR KO; K07447; -. DR OMA; CDVGLKR; -. DR OrthoDB; EOG67MF4B; -. DR BioCyc; HPY:HP0334-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.140; -; 1. DR HAMAP; MF_00651; Nuclease_YqgF; 1. DR InterPro; IPR012337; RNaseH-like_dom. DR InterPro; IPR005227; YqgF. DR InterPro; IPR006641; YqgF/RNaseH-like_dom. DR Pfam; PF03652; RuvX; 1. DR SMART; SM00732; YqgFc; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Hydrolase; Nuclease; Reference proteome; KW Ribosome biogenesis. FT CHAIN 1 134 Putative pre-16S rRNA nuclease. FT /FTId=PRO_0000172073. SQ SEQUENCE 134 AA; 15256 MW; 516D8C4233B932CE CRC64; MILACDVGLK RIGIAALLNG VILPLEAILR HNRNQASRDL SDLLREKNIQ VLVVGKPHES YADTNARIEH FIKLVDFKGE IVFINEDRSS IEAYENLEHL GKKNKRLAIK DGRLDSLSAC RILERYCQKV LKNH // ID O34550_HELPY Unreviewed; 138 AA. AC O34550; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE SubName: Full=IS200 insertion sequence from SARA17 {ECO:0000313|EMBL:AAD08053.1}; GN OrderedLocusNames=HP_0414 {ECO:0000313|EMBL:AAD07480.1}, GN HP_1008 {ECO:0000313|EMBL:AAD08053.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08053.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08053.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08053.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08053.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07480.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08053.1; -; Genomic_DNA. DR PIR; F64571; F64571. DR RefSeq; NP_207212.1; NC_000915.1. DR RefSeq; NP_207798.1; NC_000915.1. DR RefSeq; WP_001862466.1; NC_018939.1. DR STRING; 85962.HP1008; -. DR EnsemblBacteria; AAD07480; AAD07480; HP_0414. DR EnsemblBacteria; AAD08053; AAD08053; HP_1008. DR GeneID; 899542; -. DR GeneID; 900076; -. DR KEGG; heo:C694_02110; -. DR KEGG; heo:C694_05210; -. DR KEGG; hpy:HP0414; -. DR KEGG; hpy:HP1008; -. DR PATRIC; 20592079; VBIHelPyl33062_0429. DR eggNOG; ENOG4108VHB; Bacteria. DR eggNOG; COG1943; LUCA. DR KO; K07491; -. DR OMA; PNRISNV; -. DR OrthoDB; EOG6ZH2K7; -. DR BioCyc; HPY:HP0414-MONOMER; -. DR BioCyc; HPY:HP1008-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004803; F:transposase activity; IEA:InterPro. DR GO; GO:0006313; P:transposition, DNA-mediated; IEA:InterPro. DR Gene3D; 3.30.70.1290; -; 1. DR InterPro; IPR002686; Transposase_17. DR Pfam; PF01797; Y1_Tnp; 1. DR SMART; SM01321; Y1_Tnp; 1. DR SUPFAM; SSF143422; SSF143422; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 138 AA; 15965 MW; 4F7CDE67D89D0D8E CRC64; MKKIDDMRHG RHCVFLMHVH FVFVTKYRRS AFNKEVIDFL GSVFAKVCKD FESELVEFDG ESDHVHLLIN YPPKVSVSKL VNSLKGVSSR LTRQHHFKSV EASLWGKHLW SPSYFAGSCG DAPLEMIKQY IQDQETPH // ID O34754_HELPY Unreviewed; 142 AA. AC O34754; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 91. DE SubName: Full=IS605 transposase (TnpA) {ECO:0000313|EMBL:AAD07500.1}; GN OrderedLocusNames=HP_0437 {ECO:0000313|EMBL:AAD07500.1}, GN HP_0988 {ECO:0000313|EMBL:AAD08030.1}, GN HP_0998 {ECO:0000313|EMBL:AAD08044.1}, GN HP_1096 {ECO:0000313|EMBL:AAD08140.1}, GN HP_1535 {ECO:0000313|EMBL:AAD08573.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07500.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07500.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD07500.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD07500.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC -!- INTERACTION: CC P55993:rpoD; NbExp=4; IntAct=EBI-7707586, EBI-7494721; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07500.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08030.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08044.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08140.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08573.1; -; Genomic_DNA. DR PIR; D64643; D64643. DR RefSeq; NP_207235.1; NC_000915.1. DR RefSeq; NP_207779.1; NC_000915.1. DR RefSeq; NP_207789.1; NC_000915.1. DR RefSeq; NP_207887.1; NC_000915.1. DR RefSeq; NP_208326.1; NC_000915.1. DR RefSeq; WP_010875484.1; NC_018939.1. DR DIP; DIP-3149N; -. DR DIP; DIP-3167N; -. DR DIP; DIP-3169N; -. DR MINT; MINT-182410; -. DR STRING; 85962.HP1535; -. DR EnsemblBacteria; AAD07500; AAD07500; HP_0437. DR EnsemblBacteria; AAD08030; AAD08030; HP_0988. DR EnsemblBacteria; AAD08044; AAD08044; HP_0998. DR EnsemblBacteria; AAD08140; AAD08140; HP_1096. DR EnsemblBacteria; AAD08573; AAD08573; HP_1535. DR GeneID; 899521; -. DR GeneID; 899531; -. DR GeneID; 899632; -. DR GeneID; 899755; -. DR GeneID; 900069; -. DR KEGG; heo:C694_02220; -. DR KEGG; heo:C694_05100; -. DR KEGG; heo:C694_05150; -. DR KEGG; heo:C694_05655; -. DR KEGG; heo:C694_07955; -. DR KEGG; hpy:HP0437; -. DR KEGG; hpy:HP0988; -. DR KEGG; hpy:HP0998; -. DR KEGG; hpy:HP1096; -. DR KEGG; hpy:HP1535; -. DR eggNOG; ENOG4108VHB; Bacteria. DR eggNOG; COG1943; LUCA. DR KO; K07491; -. DR OMA; MESDIDH; -. DR OrthoDB; EOG6PP9P5; -. DR BioCyc; HPY:HP0437-MONOMER; -. DR BioCyc; HPY:HP0988-MONOMER; -. DR BioCyc; HPY:HP0998-MONOMER; -. DR BioCyc; HPY:HP1096-MONOMER; -. DR BioCyc; HPY:HP1535-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004803; F:transposase activity; IEA:InterPro. DR GO; GO:0006313; P:transposition, DNA-mediated; IEA:InterPro. DR Gene3D; 3.30.70.1290; -; 1. DR InterPro; IPR002686; Transposase_17. DR Pfam; PF01797; Y1_Tnp; 1. DR SMART; SM01321; Y1_Tnp; 1. DR SUPFAM; SSF143422; SSF143422; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 142 AA; 16857 MW; 560D0333EA45A44C CRC64; MRKNHYPLRG YISTNRSKHN LKAHLILVCK YRKKLLQGDL NNFIKSVIDE IATQSNFIII AMESDIDHLH LMVQYIPRMS ISSIISRIKQ ITTYRVWRDK RFIPLLQKHF WKEKTFWTDG FFVCSIGEAN PETIKAYIEN QG // ID O34461_HELPY Unreviewed; 619 AA. AC O34461; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08453.1}; GN OrderedLocusNames=HP_0424 {ECO:0000313|EMBL:AAD07493.1}, GN HP_1411 {ECO:0000313|EMBL:AAD08453.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08453.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08453.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08453.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08453.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC -!- INTERACTION: CC O24926:HP_0100; NbExp=3; IntAct=EBI-7506839, EBI-7494854; CC O25261:HP_0526; NbExp=3; IntAct=EBI-7506839, EBI-9263582; CC O25546:HP_0879; NbExp=4; IntAct=EBI-7506839, EBI-7585860; CC O26058:HP_1530; NbExp=4; IntAct=EBI-7506839, EBI-7629377; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07493.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08453.1; -; Genomic_DNA. DR PIR; C64696; C64696. DR RefSeq; NP_207222.1; NC_000915.1. DR RefSeq; NP_208202.1; NC_000915.1. DR RefSeq; WP_000923350.1; NC_018939.1. DR DIP; DIP-3068N; -. DR MINT; MINT-159518; -. DR STRING; 85962.HP1411; -. DR EnsemblBacteria; AAD07493; AAD07493; HP_0424. DR EnsemblBacteria; AAD08453; AAD08453; HP_1411. DR GeneID; 899236; -. DR GeneID; 899883; -. DR KEGG; heo:C694_02160; -. DR KEGG; heo:C694_07295; -. DR KEGG; hpy:HP0424; -. DR KEGG; hpy:HP1411; -. DR PATRIC; 20592099; VBIHelPyl33062_0439. DR OMA; GNRHGNF; -. DR OrthoDB; EOG686NCT; -. DR BioCyc; HPY:HP0424-MONOMER; -. DR BioCyc; HPY:HP1411-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 619 AA; 71524 MW; 9E628E5E882A2797 CRC64; MLLDYDFLLL LNDESGKPTR YYYLLQDFEK DFVAREVAQN KTKRFVKEII GSEKASKTKN SAIEVSNTKA SAMKNETIGS GDLKKVCEKI KSALPFGIIS AFKPFKDAFY RDFNHNEQKL LIGAAKSGCI QSSADKLAQL KTRLLYWQDK SVKVDWDKPI LIKDFFKGNN YLYRRFCFLL GKHFMDRFLK NNAKASVKDF MSSKEFVAKY RYTPKQNTER AKKLQSYLEN KRDFIGFVQA LNSLKDNPQD PFLPNEETSF LVFANEPTIV FNLRDYLLVL AQIFNQQAIC YCESKCPIEL INASPGKDFN KTQDSFPDIK FSTPNQLEQS LNALKNKLAA FFSKHPDKHN GMEFNEIAKT QIEALYMPQS SDGFDDFRKH LEESIKSFIR AKKNRYGFPK IFDVADIEQE ERKVIEWREK ERASKQSYKQ NLQINKIAND LKRDKVVDKR TILSVIDADL DRGFIPPKDL LKQLEKISAS LSKDIVIAIK QVEKLELSYA LIDNIQHNTL DDTLDFTFIV GDSLSVQSLY VTFDLVIDMD RPMSEQFLNH IGELGSFESR ERALEWVRLS QAKLIIETPR EALKNAQLSQ IEEILTGCIF NGAYRLQNDL KGNRHGNFK // ID O34810_HELPY Unreviewed; 578 AA. AC O34810; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08452.1}; GN OrderedLocusNames=HP_0426 {ECO:0000313|EMBL:AAD07495.1}, GN HP_1409 {ECO:0000313|EMBL:AAD08452.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08452.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08452.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08452.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08452.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC -!- INTERACTION: CC Q09068:ureI; NbExp=3; IntAct=EBI-7494226, EBI-7667832; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07495.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08452.1; -; Genomic_DNA. DR PIR; A64696; A64696. DR RefSeq; NP_207224.1; NC_000915.1. DR RefSeq; NP_208200.1; NC_000915.1. DR RefSeq; WP_010875476.1; NC_000915.1. DR DIP; DIP-3053N; -. DR DIP; DIP-3576N; -. DR MINT; MINT-173338; -. DR STRING; 85962.HP1409; -. DR EnsemblBacteria; AAD07495; AAD07495; HP_0426. DR EnsemblBacteria; AAD08452; AAD08452; HP_1409. DR GeneID; 899237; -. DR GeneID; 899885; -. DR KEGG; hpy:HP0426; -. DR KEGG; hpy:HP1409; -. DR PATRIC; 20592103; VBIHelPyl33062_0441. DR eggNOG; ENOG4105DPE; Bacteria. DR eggNOG; COG1479; LUCA. DR OMA; HFIVMDA; -. DR OrthoDB; EOG6JHRG3; -. DR BioCyc; HPY:HP0426-MONOMER; -. DR BioCyc; HPY:HP1409-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011089; DUF1524. DR InterPro; IPR004919; DUF262. DR Pfam; PF07510; DUF1524; 1. DR Pfam; PF03235; DUF262; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 235 DUF262. {ECO:0000259|Pfam:PF03235}. FT DOMAIN 427 554 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 578 AA; 68501 MW; 2742B82DF88DAB08 CRC64; MMAKIDVELK KLHQILVDRD YFYQVPDYQR PYVWDKDHLG ALIDDLVGSY TNNREDEYFC GSIVIVENQK DKRWDVVDGQ QRLTSFIILA CTILRLYKHS LGQESKDFIE DSIYDRYDKE KERLKFLTAQ NYNSIFENTV LNHLEFEDNI KKSELNKKFE ENTYLRNAYY FKELLNESVE NGSISDIDDF VKWFYEHIVL TRIICFEQDS AMQIFQVLND RGQPLSPIDI LKSSLMQEIK QDSEKRKDFI TTWDKLVEAC KSVEGVDIDL EDFFNMYLEY ADPSTSKKRA DKGLKKVFKD SKKDACGFIY EISEFMKAYT ALLKKQDRYV YLLRYLPSRY WASILTTALY VKYPDFDALK KLLVSYYYQT WIAGGTITRI KQTSINIIKN VKSNKSVETI KELILNSIDS YNTFDQYLYN LWDSSSVYHS KWVRPVLALA NYFMADEEKP HFIAMDAETQ VEHILPQTPK RGSQWNADFD KEKREEWVNN IANLTLLKRK KNAHALNGDF DEKRKIYGGK DTSKVISCYD ITKELYSNYR KWNEKSLQER YKSLYNTITP VLHIEGQEDD FEDDFDLE // ID O34491_HELPY Unreviewed; 427 AA. AC O34491; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=IS605 transposase (TnpB) {ECO:0000313|EMBL:AAD07501.1}; GN OrderedLocusNames=HP_0438 {ECO:0000313|EMBL:AAD07501.1}, GN HP_0997 {ECO:0000313|EMBL:AAD08043.1}, GN HP_1095 {ECO:0000313|EMBL:AAD08139.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07501.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07501.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD07501.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD07501.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07501.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08043.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08139.1; -; Genomic_DNA. DR PIR; E64644; E64644. DR RefSeq; NP_207236.1; NC_000915.1. DR RefSeq; NP_207788.1; NC_000915.1. DR RefSeq; NP_207886.1; NC_000915.1. DR RefSeq; WP_000930565.1; NC_018939.1. DR STRING; 85962.HP1095; -. DR EnsemblBacteria; AAD07501; AAD07501; HP_0438. DR EnsemblBacteria; AAD08043; AAD08043; HP_0997. DR EnsemblBacteria; AAD08139; AAD08139; HP_1095. DR GeneID; 898902; -. DR GeneID; 899530; -. DR GeneID; 899631; -. DR KEGG; heo:C694_02225; -. DR KEGG; heo:C694_05145; -. DR KEGG; heo:C694_05650; -. DR KEGG; hpy:HP0438; -. DR KEGG; hpy:HP0997; -. DR KEGG; hpy:HP1095; -. DR eggNOG; ENOG4105D7V; Bacteria. DR eggNOG; COG0675; LUCA. DR KO; K07496; -. DR OMA; KMSEMPL; -. DR OrthoDB; EOG6JTC9V; -. DR BioCyc; HPY:HP0438-MONOMER; -. DR BioCyc; HPY:HP0997-MONOMER; -. DR BioCyc; HPY:HP1095-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR001959; Transposase_2. DR InterPro; IPR010095; Transposase_IS605_OrfB_C. DR InterPro; IPR021027; Transposase_put_HTH. DR Pfam; PF12323; HTH_OrfB_IS605; 1. DR Pfam; PF01385; OrfB_IS605; 1. DR Pfam; PF07282; OrfB_Zn_ribbon; 1. DR TIGRFAMs; TIGR01766; tspaseT_teng_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 45 HTH_OrfB_IS605. FT {ECO:0000259|Pfam:PF12323}. FT DOMAIN 165 277 OrfB_IS605. {ECO:0000259|Pfam:PF01385}. FT DOMAIN 290 359 OrfB_Zn_ribbon. FT {ECO:0000259|Pfam:PF07282}. SQ SEQUENCE 427 AA; 49263 MW; 490E0202BD211A5C CRC64; MLNAIKFRIY PNAQQKELIS KHFGCSRVVY NYFLDYRQKQ YAKGIKETYF TMQKVLTQIK RQEKYHYLNE CNSQSLQMAL RQLVSAYDNF FSKRARYPKF KSKKNAKQSF AIPQNIETKT ETQTIALPKF KEGIKAKLHR DLPKDSVIKQ AFISCIADQY FCSLSYETKE PIPKPTIIKK AVGLDMGLRT LIVTSDKIGY PHIRFYQKLE KKLTKAQRRL SKKVKDSNNR KKQAKKVSRL HLACSNTRDD YLHKISNEIT NQYDLIGVET LNVKALMRTY HSKSLANASW GKFLTMLEYK AQRKGKTLLS IDRFFPSSQL CSYCGVNTGK KHESITKFTC PHCQTTHHRD YNASVNIRNY ALGMLDDRHK VKTDKARVGI IRSDYTHHTN ECVKACGASS NGVSSKYGNI LDLASYGAMK QEKAQSL // ID O34410_HELPY Unreviewed; 957 AA. AC O34410; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 83. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08167.1}; GN OrderedLocusNames=HP_0488 {ECO:0000313|EMBL:AAD07556.1}, GN HP_1116 {ECO:0000313|EMBL:AAD08167.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08167.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08167.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08167.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08167.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07556.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08167.1; -; Genomic_DNA. DR PIR; D64659; D64659. DR RefSeq; NP_207285.1; NC_000915.1. DR RefSeq; NP_207907.1; NC_000915.1. DR RefSeq; WP_000775280.1; NC_000915.1. DR DIP; DIP-3192N; -. DR DIP; DIP-3578N; -. DR IntAct; O34410; 8. DR MINT; MINT-186991; -. DR STRING; 85962.HP1116; -. DR EnsemblBacteria; AAD07556; AAD07556; HP_0488. DR EnsemblBacteria; AAD08167; AAD08167; HP_1116. DR GeneID; 899652; -. DR GeneID; 900335; -. DR KEGG; heo:C694_02510; -. DR KEGG; heo:C694_05755; -. DR KEGG; hpy:HP0488; -. DR KEGG; hpy:HP1116; -. DR PATRIC; 20592251; VBIHelPyl33062_0514. DR OMA; ERRTANK; -. DR OrthoDB; EOG67DPGB; -. DR BioCyc; HPY:HP0488-MONOMER; -. DR BioCyc; HPY:HP1116-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR021907; DUF3519. DR Pfam; PF12033; DUF3519; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 315 352 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 957 AA; 108559 MW; 75B3FCF7A41FD8FF CRC64; MKLPKALNEA TAGAALKYHI KRALERSHSI SDFSKNLELS TQKSHFSNNT LKIIEELNNG VKQASEEIKE KARDFSNQKL TNEQIKDLLN NAEIPTSGRD AITFGVNNLN PEIVEFLHKN NKKMIIEKAS NKELELLKDA NFKHPENIRA SLDHDAIAHI LKRHGVNSVN VRNGEIPITN EDIANYRYIV NNADAILRTL DNENKELISA FKQINGYAVV VEQAINKKNE LVLKTMYKSK GDYKDNNAYK KFSSTHTLNA DAKVNHRLSS YSGATENTTQ KDLIDQENLL KTSENLNEST PKPTNLSPLE QANAEKLAKL ESEKLESEKE FLKAKEQEAT RKAALKKKLE HERGNAGNIE SQTKIEVGED IPTQTQAQLP KSRVRLNERE IYDLDYAIVK AKDLKPSFTT GGTQKRTDMN EEQIKSIAEN FDPKKIFGSG GFEDLPIILH DGQVIAGNHR IQGMLNFTPK SRFSYERAIK EYYHIDLKPD ELLVRVPHKR LNNTEINNLA ASSNQGRFNS ESDHAIAVLS HYEAKLKELD QKLDADSIYS LKNIVAKNLN FDKATHPNVT DSNLALLMFN MPRTKTQGIE LLNRWKKEFS NDIKSYEKVK KMFVDNAGSF HNLIHDLNFP KVSLNAYLSD IMDRSFANLK NYQSTSESLK DLSEKFYKTS SLEMFEKSDQ STSDISEILG GAIARFARFD DPSKALFEAL RSDNIKKGLK DYKIADVTKD MFNADSKEFK DIDIYDFTHY LLMVNREPNE NNPILKRLIE AVKDMQKESE KGIKQKLETP SEWGHNYSEF KGDGLGAINK LLETKKGFVA GAFHKEGLGD IDLVYGNSKY GLEHIFNRRE SDAIDKGMSK EEAKKYALKI INNIPNIISN GKLSKDNLGR LSIEFENQRV GLNDSWKGET LNNRWVITSY EIDKSRNGLI ESPLAPNYKG KDTNPLNLDS PNPTTKN // ID O34540_HELPY Unreviewed; 111 AA. AC O34540; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08451.1}; GN OrderedLocusNames=HP_0427 {ECO:0000313|EMBL:AAD07496.1}, GN HP_1408 {ECO:0000313|EMBL:AAD08451.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08451.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08451.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08451.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08451.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07496.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08451.1; -; Genomic_DNA. DR PIR; C64573; C64573. DR STRING; 85962.HP1408; -. DR EnsemblBacteria; AAD07496; AAD07496; HP_0427. DR EnsemblBacteria; AAD08451; AAD08451; HP_1408. DR PATRIC; 20592105; VBIHelPyl33062_0442. DR OMA; IKQRYHT; -. DR OrthoDB; EOG628FBS; -. DR BioCyc; HPY:HP0427-MONOMER; -. DR BioCyc; HPY:HP1408-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 106 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 111 AA; 12901 MW; 1920320FC0FB6A02 CRC64; MSSFFQKRGR NGIQPFNHST IQPSNHPIIQ SFNHPIIQAI KQSSNQAIKQ SSNQAIKQSS NQAIKQRYHT FITFTKIRLK IPYFLLFPLL FLFSFPLSLT HTAIFLKNLI R // ID O34995_HELPY Unreviewed; 308 AA. AC O34995; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08454.1}; GN OrderedLocusNames=HP_0423 {ECO:0000313|EMBL:AAD07492.1}, GN HP_1412 {ECO:0000313|EMBL:AAD08454.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08454.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08454.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08454.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08454.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07492.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08454.1; -; Genomic_DNA. DR PIR; D64696; D64696. DR RefSeq; NP_207221.1; NC_000915.1. DR RefSeq; NP_208203.1; NC_000915.1. DR RefSeq; WP_000506796.1; NC_018939.1. DR IntAct; O34995; 7. DR STRING; 85962.HP1412; -. DR EnsemblBacteria; AAD07492; AAD07492; HP_0423. DR EnsemblBacteria; AAD08454; AAD08454; HP_1412. DR GeneID; 899882; -. DR GeneID; 900182; -. DR KEGG; heo:C694_02155; -. DR KEGG; heo:C694_07300; -. DR KEGG; hpy:HP0423; -. DR KEGG; hpy:HP1412; -. DR PATRIC; 20592097; VBIHelPyl33062_0438. DR OMA; FEGSGNQ; -. DR OrthoDB; EOG6P5ZDF; -. DR BioCyc; HPY:HP0423-MONOMER; -. DR BioCyc; HPY:HP1412-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 308 AA; 34417 MW; 445AF4C1F233A840 CRC64; MGFQNENKLK VGALVKATIN NKVVEAKVIG VGFNRVTLRS EKGNEATYAF NSDKFLKWFK EVPLNEVATN HVEKSGDDLL KNVKIVTSGQ SVKDRASTPK EKEDRFKLAF GFKTTDDKTS FEIIAEDYTL SERKSRLGAL LSPMFFEGSG NQATAIILTA LHYAKGLNKH SDAEWRAMID SRDEEKCEIT TLDNLDRVGT TLFCGVIKEY AEGNKEFEKE LNDFSPDGFW AKYLPKNKNE AMFVAQLICD GGINKYGLSC AGLTPGVLAD NLWSYGMRDE DYDEEGNVIR ERDIVTGEEL NNAEGNVE // ID O34945_HELPY Unreviewed; 427 AA. AC O34945; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=IS605 transposase (TnpB) {ECO:0000313|EMBL:AAD08572.1}; GN OrderedLocusNames=HP_0989 {ECO:0000313|EMBL:AAD08031.1}, GN HP_1534 {ECO:0000313|EMBL:AAD08572.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08572.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08572.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08572.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08572.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08031.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08572.1; -; Genomic_DNA. DR RefSeq; NP_207780.1; NC_000915.1. DR RefSeq; NP_208324.1; NC_000915.1. DR RefSeq; WP_000930564.1; NC_018939.1. DR STRING; 85962.HP1534; -. DR EnsemblBacteria; AAD08031; AAD08031; HP_0989. DR EnsemblBacteria; AAD08572; AAD08572; HP_1534. DR GeneID; 899522; -. DR GeneID; 899756; -. DR KEGG; heo:C694_05105; -. DR KEGG; heo:C694_07950; -. DR KEGG; hpy:HP0989; -. DR KEGG; hpy:HP1534; -. DR PATRIC; 20593303; VBIHelPyl33062_1033. DR eggNOG; ENOG4105D7V; Bacteria. DR eggNOG; COG0675; LUCA. DR KO; K07496; -. DR OMA; KYPRFKN; -. DR OrthoDB; EOG6JTC9V; -. DR BioCyc; HPY:HP0989-MONOMER; -. DR BioCyc; HPY:HP1534-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR001959; Transposase_2. DR InterPro; IPR010095; Transposase_IS605_OrfB_C. DR InterPro; IPR021027; Transposase_put_HTH. DR Pfam; PF12323; HTH_OrfB_IS605; 1. DR Pfam; PF01385; OrfB_IS605; 1. DR Pfam; PF07282; OrfB_Zn_ribbon; 1. DR TIGRFAMs; TIGR01766; tspaseT_teng_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 45 HTH_OrfB_IS605. FT {ECO:0000259|Pfam:PF12323}. FT DOMAIN 165 277 OrfB_IS605. {ECO:0000259|Pfam:PF01385}. FT DOMAIN 290 359 OrfB_Zn_ribbon. FT {ECO:0000259|Pfam:PF07282}. SQ SEQUENCE 427 AA; 49263 MW; B2B40212779B6A96 CRC64; MLNAIKFRIY PNAQQKELIS KHFGCSRVVY NYFLDYRQKQ YAKGIKETYF TMQKVLTQIK RQEKYHYLNE CNSQSLQMAL RQLVSAYDNF FSKRARYPKF KSKKNAKQSF AIPQNIETKT ETQTIALPKF KEGIKAKLHR DLPKDSVIKQ AFISCIADQY FCSLSYETKE PIPKPTIIKK AVGLDMGLRT LIVTSDKIGY PHIRFYQKLE KKLTKAQRRL SKKVKDSNNR KKQAKKVSRL HLACSNTRDD YLHKISNEIT NQYDLIGVET LNVKALMRTY HSKSLANASW GKFLTMLEYK AQRKGKTLLS IDRFFPSSQL CSYCGVNTGK KHESITKFTC PHCKTTHHRD YNASVNIRNY ALGMLDDRHK VKTDKARVGI IRSDYTHHTN ECVKACGASS NGVSSKYGNI LDLASYGAMK QEKAQSL // ID O34523_HELPY Unreviewed; 691 AA. AC O34523; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 84. DE SubName: Full=Outer membrane protein (Omp29) {ECO:0000313|EMBL:AAD08391.1}; DE SubName: Full=Outer membrane protein (Omp5) {ECO:0000313|EMBL:AAD07293.1}; GN OrderedLocusNames=HP_0227 {ECO:0000313|EMBL:AAD07293.1}, GN HP_1342 {ECO:0000313|EMBL:AAD08391.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08391.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08391.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=26695 {ECO:0000313|EMBL:AAD08391.1}, and RC ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000313|EMBL:AAD08391.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=26695; RA White O.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07293.1; -; Genomic_DNA. DR EMBL; AE000511; AAD08391.1; -; Genomic_DNA. DR PIR; C64548; C64548. DR RefSeq; NP_207025.1; NC_000915.1. DR RefSeq; NP_208134.1; NC_000915.1. DR RefSeq; WP_000749307.1; NC_018939.1. DR DIP; DIP-3694N; -. DR IntAct; O34523; 3. DR MINT; MINT-180206; -. DR STRING; 85962.HP1342; -. DR EnsemblBacteria; AAD07293; AAD07293; HP_0227. DR EnsemblBacteria; AAD08391; AAD08391; HP_1342. DR GeneID; 899170; -. DR GeneID; 900341; -. DR KEGG; heo:C694_01145; -. DR KEGG; heo:C694_06925; -. DR KEGG; hpy:HP0227; -. DR KEGG; hpy:HP1342; -. DR PATRIC; 20591677; VBIHelPyl33062_0238. DR OMA; MWQVIAL; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP0227-MONOMER; -. DR BioCyc; HPY:HP1342-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 691 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5006739130. SQ SEQUENCE 691 AA; 75740 MW; B98DAA20D6886CDF CRC64; MKKSLLLSLS LIASLSRAED DGFYTSVGYQ IGEAVQQVKN TGALQNLADR YDNLNNLLNQ YNYLNSLVNL ASTPSAITGA IDNLSSSAIN LTSATTTSPA YQAVALALNA AVGMWQVIAL FIGCGPGPTN NQSYQSFGNT PALNGTTTTC NQAYGTGPNG ILSIDEYQKL NQAYQIIQTA LNQNQGGGMP ALNDTTKTGV VNIQQTNYRT TTQNNIIEHY YTENGKEIPV SYSGGSSFSP TIQLTYHNNA ENLLQQAATI MQVLITQKPH VQTSNGGKAW GLSSTPGNVM DIFGPSFNAI NEMIKNAQTA LAKTQQLNAN ENAQITQPNN FNPYTSKDKG FAQEMLNRAE AQAEILNLAK QVANNFHSIQ GPIQGDLEEC KAGSAGVITN NTWGSGCAFV KETLNSLEQH TAYYGNQVNQ DRALAQTILN FKEALNTLNK DSKAINSGIS NLPNAKSLQN MTHATQNPNS PEGLLTYSLD SSKYNQLQTI AQELGKNPFR RFGVIDFQNN NGAMNGIGVQ VGYKQFFGKK RNWGLRYYGF FDYNHAYIKS NFFNSASDVW TYGVGMDALY NFINDKNTNF LGKNNKLSVG LFGGFALAGT SWLNSQQVNL TMMNGIYNAN VSTSNFQFLF DLGLRMNLAR PKKKDSDHAA QHGIELGFKI PTINTNYYSF MGAKLEYRRM YSLFLNYVFA Y // ID O25794_HELPY Unreviewed; 253 AA. AC O25794; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 98. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08228.1}; GN OrderedLocusNames=HP_1182 {ECO:0000313|EMBL:AAD08228.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08228.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08228.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the TtcA family. CC {ECO:0000256|SAAS:SAAS00557831}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08228.1; -; Genomic_DNA. DR PIR; F64667; F64667. DR RefSeq; NP_207973.1; NC_000915.1. DR RefSeq; WP_000312855.1; NC_018939.1. DR ProteinModelPortal; O25794; -. DR DIP; DIP-3715N; -. DR IntAct; O25794; 1. DR MINT; MINT-159898; -. DR STRING; 85962.HP1182; -. DR PaxDb; O25794; -. DR EnsemblBacteria; AAD08228; AAD08228; HP_1182. DR GeneID; 899944; -. DR KEGG; heo:C694_06115; -. DR KEGG; hpy:HP1182; -. DR PATRIC; 20593719; VBIHelPyl33062_1237. DR eggNOG; ENOG4105CB3; Bacteria. DR eggNOG; COG0037; LUCA. DR OMA; IHIRERQ; -. DR OrthoDB; EOG60KN2F; -. DR BioCyc; HPY:HP1182-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008033; P:tRNA processing; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR012089; 2-thiocytidine_tRNA_synth_TtcA. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR011063; TilS/TtcA_N. DR Pfam; PF01171; ATP_bind_3; 1. DR PIRSF; PIRSF004976; ATPase_YdaO; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 28 195 ATP_bind_3. {ECO:0000259|Pfam:PF01171}. SQ SEQUENCE 253 AA; 28569 MW; 69EB4EAB230F8941 CRC64; MAYEISKKVL HIVGKTNATY KLIEEGDKIL LGLSGGKDSI MLACILARMQ KHAPFKFDFK AVTVHYGLGE DLKWLSDLCQ EQGIEHEIIY TQIAATINEK RREKSSFCSF CSRLRRGTLY SKALEEGYNK VAIAHHLDDA VESFFMNFTY NGSLRSMPPI YRAENGLLVI RPLIKVREAS SIHFVTSQNI PVAPDCNCPA KQPTSDKPPI ARLATKNFLK EMQNLHPRFF DSLENAFNNV QANSFSDAKY LDA // ID O24965_HELPY Unreviewed; 200 AA. AC O24965; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07227.1}; GN OrderedLocusNames=HP_0156 {ECO:0000313|EMBL:AAD07227.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07227.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07227.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07227.1; -; Genomic_DNA. DR PIR; D64539; D64539. DR RefSeq; NP_206955.1; NC_000915.1. DR RefSeq; WP_000260967.1; NC_000915.1. DR ProteinModelPortal; O24965; -. DR DIP; DIP-3147N; -. DR IntAct; O24965; 4. DR MINT; MINT-171560; -. DR STRING; 85962.HP0156; -. DR PaxDb; O24965; -. DR PRIDE; O24965; -. DR EnsemblBacteria; AAD07227; AAD07227; HP_0156. DR GeneID; 900145; -. DR KEGG; hpy:HP0156; -. DR PATRIC; 20591533; VBIHelPyl33062_0166. DR eggNOG; ENOG4105ZFS; Bacteria. DR eggNOG; ENOG41123V4; LUCA. DR OMA; IDWHYPL; -. DR OrthoDB; EOG6H7FFF; -. DR BioCyc; HPY:HP0156-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR021731; AMIN_dom. DR Pfam; PF11741; AMIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 125 191 AMIN. {ECO:0000259|Pfam:PF11741}. SQ SEQUENCE 200 AA; 23248 MW; F6817371F4B56ABF CRC64; MVVLKKMIGL VVVLSVLLAR DNPFEPEINS KNLQGGFNGI YDSYFKEIHV DLPTSARILK QITLTYQDID GSIHSKVVGI DKGIDWHYPL KLSQHTLDPA AFEKRYQIQD FDFLMASNTM ILRSPYKILR SFVLVNPYRI VLDTQKGPLD IYQNMDLNQK FFSHIKVGTH KDYYRITLIL DGKYRYLLEE KNGAYELKLK // ID O25248_HELPY Unreviewed; 212 AA. AC O25248; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07572.1}; GN OrderedLocusNames=HP_0507 {ECO:0000313|EMBL:AAD07572.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07572.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07572.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07572.1; -; Genomic_DNA. DR PIR; C64583; C64583. DR RefSeq; NP_207304.1; NC_000915.1. DR RefSeq; WP_000119978.1; NC_018939.1. DR ProteinModelPortal; O25248; -. DR DIP; DIP-3438N; -. DR IntAct; O25248; 14. DR MINT; MINT-163553; -. DR STRING; 85962.HP0507; -. DR PaxDb; O25248; -. DR EnsemblBacteria; AAD07572; AAD07572; HP_0507. DR GeneID; 899262; -. DR KEGG; heo:C694_02605; -. DR KEGG; hpy:HP0507; -. DR PATRIC; 20592289; VBIHelPyl33062_0533. DR eggNOG; ENOG4108WXY; Bacteria. DR eggNOG; COG0494; LUCA. DR KO; K08077; -. DR OMA; YTYELCA; -. DR OrthoDB; EOG68Q0PK; -. DR BioCyc; HPY:HP0507-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.90.79.10; -; 1. DR InterPro; IPR004385; NDP_pyrophosphatase. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR SUPFAM; SSF55811; SSF55811; 1. DR TIGRFAMs; TIGR00052; TIGR00052; 1. DR PROSITE; PS51462; NUDIX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 50 200 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 212 AA; 24363 MW; 420D60BF0B3DFC11 CRC64; MSYFKNAFNQ KSLIDDSSVY LEPCSSSNFI ELKRMHYNEE NTKKTWDIIK SLDSVAVLLY EKESDCFVIV KQFRPAIYAR RFHFKCDQDQ TIDGYTYELC AGLVDKANKS LEEIACEEAL EECGYQISPK NLETIGQFYS ATGLSGSLQT LYYAEVHKNL KVSKGGGIDT ERIEVLFLER SKALDFIMDF QYAKTTGLSL AILWHLKKFK NV // ID O25622_HELPY Unreviewed; 1020 AA. AC O25622; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 75. DE SubName: Full=Cation efflux system protein (CzcA) {ECO:0000313|EMBL:AAD08012.1}; GN OrderedLocusNames=HP_0969 {ECO:0000313|EMBL:AAD08012.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08012.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08012.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the resistance-nodulation-cell division CC (RND) (TC 2.A.6) family. {ECO:0000256|SAAS:SAAS00536972}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08012.1; -; Genomic_DNA. DR PIR; A64641; A64641. DR RefSeq; NP_207760.1; NC_000915.1. DR RefSeq; WP_000978968.1; NC_000915.1. DR ProteinModelPortal; O25622; -. DR DIP; DIP-3083N; -. DR IntAct; O25622; 5. DR MINT; MINT-170458; -. DR STRING; 85962.HP0969; -. DR TCDB; 2.A.6.1.14; the resistance-nodulation-cell division (rnd) superfamily. DR PaxDb; O25622; -. DR PRIDE; O25622; -. DR EnsemblBacteria; AAD08012; AAD08012; HP_0969. DR GeneID; 899501; -. DR KEGG; hpy:HP0969; -. DR PATRIC; 20593251; VBIHelPyl33062_1007. DR eggNOG; ENOG4108IJF; Bacteria. DR eggNOG; COG3696; LUCA. DR KO; K15726; -. DR OMA; YDRSEFT; -. DR OrthoDB; EOG66XB9M; -. DR BioCyc; HPY:HP0969-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 3.30.2090.10; -; 2. DR InterPro; IPR027463; AcrB_DN_DC_subdom. DR InterPro; IPR001036; Acrflvin-R. DR InterPro; IPR004763; CzcA/CusA/SilA/NccA/HelA/CnrA. DR Pfam; PF00873; ACR_tran; 1. DR PRINTS; PR00702; ACRIFLAVINRP. DR SUPFAM; SSF82714; SSF82714; 2. DR TIGRFAMs; TIGR00914; 2A0601; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 330 353 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 360 377 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 389 411 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 432 457 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 469 492 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 524 542 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 858 877 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 884 904 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 910 934 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 955 975 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 987 1014 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 1020 AA; 111323 MW; 4C0D3B12ADCF4731 CRC64; MMLASIIEFS LRQRVIVIVG AILILFFGTY SFINTPVDAF PDISPTQVKI ILKLPGSSPE EMENNIVRPL ELELLGLKGQ KSLRSVSKYS ISDITIDFDD SVDIYLARNI VNERLSSVMK DLPVGVEGGM APIVTPLSDI FMFTIDGNIT EIEKRQLLDF VIRPQLRMIS GVADVNSIGG FSRAFVIVPD FNDMARLGVS ISDLESAVRV NLRNSGAGRV DRDGETFLVK IQTASLSLED IGKITVSTNL GHLHIKDFAK VISQSRTRLG FVTKDGVGET TEGLVLSLKD ANTKEIITQV YQKLEELKPF LPNGVSINVF YDRSEFTQKA IATVSKTLIE AVVLIIITLF LFLGNLRASV AVGVILPLSL SVAFIFIKFS DLTLNLMSLG GLVIAIGMLI DSAVVVVENA FEKLSANTKT TKLHAIYRSC KEIAVSVVSG VVIIIVFFVP ILTLQGLEGK MFRPLAQSIV YALLGTLVLS ITIIPVVSSL VLKATPHSET FLTRFLNRIY APLLEFFVHN PKKVILGAFV FLIASLSLFP FVGKNFMPVL DEGDVVLSVE TTPSISLDQS RDLMLNIESA IKKHVKEVKS IVARTGSDEL GLDLGGLNQT DTFISFIPKK EWSVKTKDEL LEKIMDSLKD FKGINFSFTQ PIEMRISEML TGVRGDLAVK IFGDGISELN ELSFQIAQAL KGIKGSSEVL TTLNEGVNYL YVTPNKESMA DVGITSDEFS KFLKSALEGL VVDVIPTGIS RTPVMIRQES DFASSITKIK SLALTSKYGV LVPITSIAKI EEVDGPVSVV RENSMRMSVV RSNVVGRDLK SFVEEAKKVI AQNIKLPPSY YITYGGQFEN QQRANKRLST VIPLSILAIF FILFFTFKSI PLALLILLNI PFAVTGGLIA LFAVGEYISV PASVGFIALF GIAVLNGVVM IGYFKELLLQ GKSVEECVLL GAKRRLRPVL MTACIAGLGL LPLLFSHSVG SEVQKPLAIV VLGGLVTSSA LTLLLLPPMF MLIAKKIKIV // ID O25394_HELPY Unreviewed; 153 AA. AC O25394; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-NOV-1999, sequence version 4. DT 11-MAY-2016, entry version 89. DE SubName: Full=Flagellar biosynthetic protein (FliP) {ECO:0000313|EMBL:AAD14890.2}; GN OrderedLocusNames=HP_0685 {ECO:0000313|EMBL:AAD14890.2}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14890.2, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14890.2, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14890.2; -; Genomic_DNA. DR PIR; E64605; E64605. DR ProteinModelPortal; O25394; -. DR STRING; 85962.HP0685; -. DR PaxDb; O25394; -. DR PRIDE; O25394; -. DR EnsemblBacteria; AAD14890; AAD14890; HP_0685. DR PATRIC; 20592655; VBIHelPyl33062_0716. DR eggNOG; COG1338; LUCA. DR OMA; GTSEYSA; -. DR OrthoDB; EOG6GBMBW; -. DR BioCyc; HPY:HP0685-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR InterPro; IPR005837; FliP. DR InterPro; IPR005838; T3SS_IM_P. DR PANTHER; PTHR30587:SF0; PTHR30587:SF0; 1. DR Pfam; PF00813; FliP; 1. DR PRINTS; PR00951; FLGBIOSNFLIP. DR PRINTS; PR01302; TYPE3IMPPROT. DR PROSITE; PS01060; FLIP_1; 1. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD14890.2}; KW Cilium {ECO:0000313|EMBL:AAD14890.2}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD14890.2}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 142 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 153 AA; 17550 MW; 7A29A3EE36709499 CRC64; MILTFFIMEP SLKKAYDTGI KPYMDKKISY TEAFEKSALP FKEFMLKNTR EKDLALFFRI RNLPNPKTPD EVSLSVLIPA FMISELKTAF QIGFLLYLPF LVIDMVISSI LMAMGMMMLP PVMISLPFKI LVFILVDGFN LLTENLVASF KMV // ID O25998_HELPY Unreviewed; 172 AA. AC O25998; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 69. DE SubName: Full=Secreted protein involved in flagellar motility {ECO:0000313|EMBL:AAD08504.1}; GN OrderedLocusNames=HP_1462 {ECO:0000313|EMBL:AAD08504.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08504.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08504.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25612:HP_0958; NbExp=3; IntAct=EBI-7601350, EBI-7600058; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08504.1; -; Genomic_DNA. DR PIR; F64702; F64702. DR RefSeq; NP_208253.1; NC_000915.1. DR RefSeq; WP_001873459.1; NC_000915.1. DR ProteinModelPortal; O25998; -. DR DIP; DIP-3605N; -. DR IntAct; O25998; 2. DR MINT; MINT-172739; -. DR STRING; 85962.HP1462; -. DR PaxDb; O25998; -. DR PRIDE; O25998; -. DR EnsemblBacteria; AAD08504; AAD08504; HP_1462. DR GeneID; 899831; -. DR KEGG; hpy:HP1462; -. DR PATRIC; 20594335; VBIHelPyl33062_1536. DR eggNOG; COG3187; LUCA. DR OMA; KRKRWYE; -. DR OrthoDB; EOG6MD93V; -. DR BioCyc; HPY:HP1462-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR InterPro; IPR005184; DUF306_Meta_HslJ. DR Pfam; PF03724; META; 1. PE 1: Evidence at protein level; KW Cell projection {ECO:0000313|EMBL:AAD08504.1}; KW Cilium {ECO:0000313|EMBL:AAD08504.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08504.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 76 165 META. {ECO:0000259|Pfam:PF03724}. SQ SEQUENCE 172 AA; 20480 MW; 97A3BF1A60FA977D CRC64; MFDKKLSSND WHIQKVEMNH QVYDIETMLA DSAFREHEEE QDSSLNTALP EDKTAIEAKE QEQKEKRKRW YELFKKKPKP KSSMGEFVFD QKENRIYGKG YCNRYFASYV WQGDRHIGIE DSGISRKVCK DEHLMAFELE FMENFKGNFT VTKGKDTLIL DNQKMKIYLK TP // ID O25886_HELPY Unreviewed; 338 AA. AC O25886; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 77. DE SubName: Full=Cation efflux system protein (CzcA) {ECO:0000313|EMBL:AAD08369.1}; GN OrderedLocusNames=HP_1328 {ECO:0000313|EMBL:AAD08369.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08369.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08369.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08369.1; -; Genomic_DNA. DR PIR; H64685; H64685. DR RefSeq; NP_208120.1; NC_000915.1. DR RefSeq; WP_000822204.1; NC_018939.1. DR ProteinModelPortal; O25886; -. DR STRING; 85962.HP1328; -. DR PaxDb; O25886; -. DR EnsemblBacteria; AAD08369; AAD08369; HP_1328. DR GeneID; 899045; -. DR KEGG; heo:C694_06855; -. DR KEGG; hpy:HP1328; -. DR PATRIC; 20594037; VBIHelPyl33062_1389. DR eggNOG; ENOG4105EP1; Bacteria. DR eggNOG; ENOG410XPHF; LUCA. DR OMA; EMTIYSH; -. DR OrthoDB; EOG693GPF; -. DR BioCyc; HPY:HP1328-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032317; HlyD_D23. DR Pfam; PF16576; HlyD_D23; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 338 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157776. FT DOMAIN 52 257 HlyD_D23. {ECO:0000259|Pfam:PF16576}. SQ SEQUENCE 338 AA; 38612 MW; EBE49BD688AE1F28 CRC64; MKRILWLALI LFFSPLFANA QKTQEIKKTK EAKSQTRFNI STTKVIEKEF SQSRRYYALL EPNEALIFSQ TLRFDGYVEK LYANKTYTPI KKGDRLLSVY SPELVSAQSE LLSSLKFNQQ VGAIKEKLKL LGLENSSIEK IISSHKVQNE MTIYSHFNGI IFKKSPDLNE GSFIKKGQEL FQIIDLSQLW ALVKVNQEDL EFLKNTHKAI LFVEGIKGEQ EITLENINPI INKEDKMLEA RFNVPNVKQI YYPNMFAQVE IFQKPQKMKI LPKEAVLIKG GKAIVFKKDD FGLSPLEIKA VRLSDGSYEI LEGLKAGEEV ANNALFVLDA DAQNNGDY // ID O25628_HELPY Unreviewed; 487 AA. AC O25628; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 79. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08023.1}; GN OrderedLocusNames=HP_0977 {ECO:0000313|EMBL:AAD08023.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08023.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08023.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08023.1; -; Genomic_DNA. DR PIR; A64642; A64642. DR RefSeq; NP_207768.1; NC_000915.1. DR RefSeq; WP_000574070.1; NC_018939.1. DR ProteinModelPortal; O25628; -. DR DIP; DIP-3065N; -. DR IntAct; O25628; 4. DR MINT; MINT-172188; -. DR STRING; 85962.HP0977; -. DR PaxDb; O25628; -. DR EnsemblBacteria; AAD08023; AAD08023; HP_0977. DR GeneID; 899509; -. DR KEGG; heo:C694_05030; -. DR KEGG; hpy:HP0977; -. DR PATRIC; 20593269; VBIHelPyl33062_1016. DR eggNOG; ENOG4107SU3; Bacteria. DR eggNOG; COG0760; LUCA. DR KO; K03770; -. DR OMA; MIEWMQN; -. DR OrthoDB; EOG66HVCS; -. DR BioCyc; HPY:HP0977-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016853; F:isomerase activity; IEA:InterPro. DR InterPro; IPR000297; PPIase_PpiC. DR InterPro; IPR027304; Trigger_fact/SurA_dom. DR Pfam; PF13145; Rotamase_2; 1. DR SUPFAM; SSF109998; SSF109998; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 243 360 PpiC. {ECO:0000259|Pfam:PF13145}. SQ SEQUENCE 487 AA; 56493 MW; 715EAF5BCA244EB8 CRC64; MIEWMQNHRK YLVVTIWIST IAFIAAGMIG WGQYSFSLDS DSAAKVGQIK ISQEELAQEY RRLKDAYAES IPDFKELTKD QIKAMHLEKS ALDSLINQAL LRNLALDLGL GATKQEVAKE IRKTSVFQKD GVFDEELYKN ILKQSHYRPK HFEESVERLL ILQKISTLFP KTTTPLEQSS LSLWAKLQDK LDILILNPSD VKISLNEEEM KKYYESHKKD FKKPTSFKTR SLYFDASLEK PDLKELEEYY HKNKVSYLDK EGKLQDFKSV QEQVKHDLSM QKANEKALRS YIALKKANAQ NYTTQDFEEN NSPYTAEITQ KLTALKPLEI LKPEPFKDGF IVVQLISQIK DELQNFNEAK SALKTRLTQE KTLMALQTLA KEKLKDFKGK SVGYVSPNFG GTISELNQEE SAKFINALFN RQEKKGFIAI NNKVVLYQIT EQNFNHSFSA EESQYMQRLV NNTKTDFFDK ALIEELKKRY KIVKYIQ // ID O25872_HELPY Unreviewed; 230 AA. AC O25872; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08330.1}; GN OrderedLocusNames=HP_1285 {ECO:0000313|EMBL:AAD08330.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08330.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08330.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08330.1; -; Genomic_DNA. DR PIR; E64680; E64680. DR RefSeq; NP_208077.1; NC_000915.1. DR RefSeq; WP_000114874.1; NC_000915.1. DR ProteinModelPortal; O25872; -. DR IntAct; O25872; 9. DR STRING; 85962.HP1285; -. DR PaxDb; O25872; -. DR DNASU; 899065; -. DR EnsemblBacteria; AAD08330; AAD08330; HP_1285. DR GeneID; 899065; -. DR KEGG; heo:C694_06640; -. DR KEGG; hpy:HP1285; -. DR PATRIC; 20593949; VBIHelPyl33062_1345. DR eggNOG; ENOG4105CUR; Bacteria. DR eggNOG; COG2503; LUCA. DR OMA; LVKNCIK; -. DR OrthoDB; EOG6P8TN1; -. DR BioCyc; HPY:HP1285-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:InterPro. DR Gene3D; 3.40.50.1000; -; 1. DR InterPro; IPR005519; Acid_phosphat_B-like. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006423; Lipo_e_P4. DR Pfam; PF03767; Acid_phosphat_B; 1. DR PIRSF; PIRSF019271; Acid_Ptase_C; 1. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01533; lipo_e_P4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 230 AA; 26297 MW; F421ACF8FFD90E00 CRC64; MSVLNAKECV SPITRSVKYH QQSAEIRALQ LQSYKMAKMA LDNNLKLVKD KKPAVILDLD ETVLNTFDYA GYLIKNCIKY TPETWDKFEK EGSLTLIPGA LDFLEYANSK GVKIFYISNR TQKNKAFTLK TLKSFKLPQV SEESVLLKEK GKPKAVRREL VAKDYAIVLQ VGDTLHDFDA IFAKDAKNSQ EQRAKVLQNA QKFGTEWIIL PNSLYGTWED EPIKAWQNKK // ID O25738_HELPY Unreviewed; 407 AA. AC O25738; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 92. DE SubName: Full=Pyruvate ferredoxin oxidoreductase, alpha subunit {ECO:0000313|EMBL:AAD08154.1}; GN OrderedLocusNames=HP_1110 {ECO:0000313|EMBL:AAD08154.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08154.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08154.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08154.1; -; Genomic_DNA. DR PIR; F64658; F64658. DR RefSeq; NP_207901.1; NC_000915.1. DR RefSeq; WP_001129867.1; NC_018939.1. DR ProteinModelPortal; O25738; -. DR STRING; 85962.HP1110; -. DR PaxDb; O25738; -. DR EnsemblBacteria; AAD08154; AAD08154; HP_1110. DR GeneID; 899646; -. DR KEGG; heo:C694_05725; -. DR KEGG; hpy:HP1110; -. DR PATRIC; 20593561; VBIHelPyl33062_1160. DR eggNOG; ENOG4105D95; Bacteria. DR eggNOG; COG0674; LUCA. DR KO; K00169; -. DR OMA; WHFEHKA; -. DR OrthoDB; EOG68H83G; -. DR BioCyc; HPY:HP1110-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR033412; PFOR_II. DR InterPro; IPR002880; Pyrv_Fd/Flavodoxin_OxRdtase_N. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR Pfam; PF17147; PFOR_II; 1. DR Pfam; PF01855; POR_N; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR SUPFAM; SSF52922; SSF52922; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Pyruvate {ECO:0000313|EMBL:AAD08154.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 22 246 POR_N. {ECO:0000259|Pfam:PF01855}. SQ SEQUENCE 407 AA; 44744 MW; B693A2659A44C0BA CRC64; MAKSIELQEI EVWDGNTASS NALRQAQIDV IAAYPITPST PIVQNYGSFK DNGYVDGEFV LVESEHAAMS ACVGAAAAGG RVSTATSSQG LALMVEVLYQ ASGMRLPIVL NLVNRALAAP LNIHGDHSDM YLSRDSGWIS LCTCNPQEAY DFTLMAFRIA EHQKVRVPTI VNQDGFLCSH TVQNVRPLSD AVAYQFVGEY QTKHSLLDFD KPVSYGAQAE EEWHYEHKAQ LHHAIMSASS VIEEVFNDFA KLTGRQYHLT KTFQLEDAEI AIFALGTTYE SAIVAAKEMR KKGIKAGVAT IHSLRPFPYE RLGQDLKNLK ALAILDKSSP AGTMGAMFNE VTSAVYQTQG TKHPVVSNYI YGLGERDMTI AHLCEIFEEI NEDALKGTLT HPTQQFVGLH GPKMSFF // ID O25864_HELPY Unreviewed; 801 AA. AC O25864; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 94. DE SubName: Full=Paralysed flagella protein (PflA) {ECO:0000313|EMBL:AAD08318.1}; GN OrderedLocusNames=HP_1274 {ECO:0000313|EMBL:AAD08318.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08318.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08318.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08318.1; -; Genomic_DNA. DR PIR; B64679; B64679. DR RefSeq; NP_208066.1; NC_000915.1. DR RefSeq; WP_000266337.1; NC_000915.1. DR ProteinModelPortal; O25864; -. DR DIP; DIP-3066N; -. DR IntAct; O25864; 15. DR MINT; MINT-172873; -. DR STRING; 85962.HP1274; -. DR PaxDb; O25864; -. DR EnsemblBacteria; AAD08318; AAD08318; HP_1274. DR GeneID; 900203; -. DR KEGG; heo:C694_06585; -. DR KEGG; hpy:HP1274; -. DR PATRIC; 20593925; VBIHelPyl33062_1333. DR eggNOG; ENOG4105DAW; Bacteria. DR eggNOG; ENOG410XPR0; LUCA. DR OMA; ECVIDSI; -. DR OrthoDB; EOG69SK6P; -. DR BioCyc; HPY:HP1274-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 4. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF13174; TPR_6; 1. DR SUPFAM; SSF48452; SSF48452; 4. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD08318.1}; KW Cilium {ECO:0000313|EMBL:AAD08318.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08318.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 801 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158588. FT DOMAIN 269 376 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 801 AA; 92525 MW; 19E50CC172F4FBDE CRC64; MWLKSKIFLL MGLFSHSLNA LSLTLTQGKE GGEDFSVLTL RHNKAFSCFY ANEKPPSGIE ASLSIIRAKR PIECVIDSIP KEGFTPLENA FFNITYSMHQ QQFILHIKPK VMRRLTLFSF DRDYKKAIPL FVENDPKARM WQIIGYDQNI PFLSKKDNAQ KGLNFPIVIK DAQTPIIQEL DVNNKPLLTT KGYDLNAYLE AKKQMDSQAY FDALRTISRA FKNYPQTMFK KDLYLLEIIA LGQLGIKKSL LIDIGTQWIK NYPTDPNIPE ALYYVAKALD ENNHYKQAMR YYKRILLEYK NSRYAPLAQM RLAIEAAEGS DLSNANMLFK EAFSNAKDKE SASEIALNWA EAEINYQNFN NAKYLIDKVV QSNPDYISTH SESALDLLKL LKKNQMNASA IEIAHLLLNQ DDDLKAKEQA LYDLGALYAR IKDFKNAHLY NLQYLQDHAE LDKASVVRAR DEKALFSMEG NTQEKIAHYD KIIQNFPNSN EALKALELKA QLLFENKRYA EVLSMQKNLP KDSPLIQKTL NVLAKTPLEN HRCEEALKYL SQITTFEFSP KEEIQAFDCL YFASLKEKAQ IIALNAFKTA KAPSEKLIWL YRLGRNYYRL GDFKNSTLAS KDALILAQSL NKKEFYDIAF VLFSDYMQNN EKELALHLYA FLEKHFKGDK RMALVYFKLL ENEKDPKSVK IYATSLLKLQ DAYKDYSYTP FSEFALIDAY RTTKDYLKAL ETLDKLLNRR LSLEDHQKAL YLQSSLLDLT HQKAKSRASL EKCVQLKQKD QTNAWQNLCE QGLNLFKNKE S // ID O26081_HELPY Unreviewed; 140 AA. AC O26081; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 94. DE RecName: Full=Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; GN OrderedLocusNames=HP_1559 {ECO:0000313|EMBL:AAD08599.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08599.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08599.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Structural component of flagellum, the bacterial CC motility apparatus. Part of the rod structure of flagellar basal CC body. {ECO:0000256|PIRNR:PIRNR002889}. CC -!- SUBUNIT: The basal body constitutes a major portion of the CC flagellar organelle and consists of a number of rings mounted on a CC central rod. {ECO:0000256|PIRNR:PIRNR002889}. CC -!- INTERACTION: CC O25546:HP_0879; NbExp=3; IntAct=EBI-7500288, EBI-7585860; CC P55991:topA; NbExp=3; IntAct=EBI-7500288, EBI-7493738; CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|PIRNR:PIRNR002889}. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000256|PIRNR:PIRNR002889}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08599.1; -; Genomic_DNA. DR PIR; G64714; G64714. DR RefSeq; NP_208350.1; NC_000915.1. DR RefSeq; WP_000347783.1; NC_018939.1. DR ProteinModelPortal; O26081; -. DR DIP; DIP-3756N; -. DR IntAct; O26081; 57. DR MINT; MINT-160772; -. DR STRING; 85962.HP1559; -. DR PaxDb; O26081; -. DR DNASU; 899732; -. DR EnsemblBacteria; AAD08599; AAD08599; HP_1559. DR GeneID; 899732; -. DR KEGG; heo:C694_08080; -. DR KEGG; hpy:HP1559; -. DR PATRIC; 20594543; VBIHelPyl33062_1639. DR eggNOG; ENOG41080W7; Bacteria. DR eggNOG; COG1815; LUCA. DR KO; K02387; -. DR OMA; DFENSTK; -. DR OrthoDB; EOG6Q8J3B; -. DR BioCyc; HPY:HP1559-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030694; C:bacterial-type flagellum basal body, rod; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR001444; Flag_bb_rod_N. DR InterPro; IPR019776; Flagellar_basal_body_rod_CS. DR InterPro; IPR006300; FlgB. DR Pfam; PF00460; Flg_bb_rod; 1. DR PIRSF; PIRSF002889; Rod_FlgB; 1. DR TIGRFAMs; TIGR01396; FlgB; 1. DR PROSITE; PS00588; FLAGELLA_BB_ROD; 1. PE 1: Evidence at protein level; KW Bacterial flagellum {ECO:0000256|PIRNR:PIRNR002889}; KW Cell projection {ECO:0000313|EMBL:AAD08599.1}; KW Cilium {ECO:0000313|EMBL:AAD08599.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08599.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 34 Flg_bb_rod. {ECO:0000259|Pfam:PF00460}. SQ SEQUENCE 140 AA; 15719 MW; 5081AD64AFA6BD85 CRC64; MDFSKAFGLV YKALDYRSLR QDMIASNIAN VDTPFYRPKD LDFESVLAKK KAEIFENQSS KVLPLAHTNP RHLDFENSAK DGASLFFRDG HLAKNDGNSV DLDIETSEMG KNSTMYLALS SALKKYRGVI NYAIDSSKNL // ID O24954_HELPY Unreviewed; 328 AA. AC O24954; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 87. DE SubName: Full=A/G-specific adenine glycosylase (MutY) {ECO:0000313|EMBL:AAD07210.1}; GN OrderedLocusNames=HP_0142 {ECO:0000313|EMBL:AAD07210.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07210.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07210.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07210.1; -; Genomic_DNA. DR PIR; F64537; F64537. DR RefSeq; NP_206942.1; NC_000915.1. DR RefSeq; WP_010875444.1; NC_000915.1. DR ProteinModelPortal; O24954; -. DR IntAct; O24954; 1. DR STRING; 85962.HP0142; -. DR PaxDb; O24954; -. DR PRIDE; O24954; -. DR EnsemblBacteria; AAD07210; AAD07210; HP_0142. DR GeneID; 900190; -. DR KEGG; hpy:HP0142; -. DR PATRIC; 20591501; VBIHelPyl33062_0150. DR eggNOG; ENOG4105CEN; Bacteria. DR eggNOG; COG1194; LUCA. DR KO; K03575; -. DR OMA; HPEKHTL; -. DR OrthoDB; EOG6RNQH0; -. DR BioCyc; HPY:HP0142-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.1670.10; -; 1. DR Gene3D; 1.10.340.30; -; 1. DR InterPro; IPR011257; DNA_glycosylase. DR InterPro; IPR003265; HhH-GPD_domain. DR InterPro; IPR000445; HhH_motif. DR InterPro; IPR023170; HTH_base_excis_C. DR Pfam; PF00633; HHH; 1. DR Pfam; PF00730; HhH-GPD; 1. DR SMART; SM00478; ENDO3c; 1. DR SUPFAM; SSF48150; SSF48150; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 40 188 ENDO3c. {ECO:0000259|SMART:SM00478}. SQ SEQUENCE 328 AA; 37738 MW; 31E38700F07C3FBF CRC64; METLHNALLK WYEEFGRKGL PFRNLKGINA PYEVYISEVM SQQTQINTVI ERFYSPFLEA FPTLKDLANA QLEEVLLLWR GLGYYSRAKN LKKSAEICVK EHHSQLPNDY QSLLKLPGIG AYTANAILCF GFREKRACVD ANIKRVLLRL FGLDPNIHAK DLQIKANEFL NLNESFNHNQ ALIDLGALIC SPKPKCAICP FNPYCLGKNH LEKHTLKKKQ EIIQEERYLG VVIQNNQIAL EKIEQKLYLG MHHFPDLKEN LECKLPFLGA IKHSHTKFKL HLNLYSAAIK DLKNPVRFYS LKDLETLPIS SMTLKILNFL KQKNLFGG // ID O25878_HELPY Unreviewed; 204 AA. AC O25878; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 86. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08334.1}; GN OrderedLocusNames=HP_1291 {ECO:0000313|EMBL:AAD08334.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08334.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08334.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08334.1; -; Genomic_DNA. DR PIR; C64681; C64681. DR RefSeq; NP_208083.1; NC_000915.1. DR RefSeq; WP_001149282.1; NC_018939.1. DR ProteinModelPortal; O25878; -. DR DIP; DIP-3699N; -. DR IntAct; O25878; 6. DR MINT; MINT-174132; -. DR STRING; 85962.HP1291; -. DR PaxDb; O25878; -. DR EnsemblBacteria; AAD08334; AAD08334; HP_1291. DR GeneID; 899054; -. DR KEGG; heo:C694_06670; -. DR KEGG; hpy:HP1291; -. DR PATRIC; 20593963; VBIHelPyl33062_1352. DR eggNOG; ENOG4105GHG; Bacteria. DR eggNOG; COG1564; LUCA. DR KO; K00949; -. DR OMA; KFCQKIQ; -. DR OrthoDB; EOG67T5PF; -. DR BioCyc; HPY:HP1291-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004788; F:thiamine diphosphokinase activity; IEA:InterPro. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:InterPro. DR GO; GO:0006772; P:thiamine metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.10240; -; 1. DR InterPro; IPR006282; Thi_PPkinase. DR InterPro; IPR007371; TPK_catalytic. DR Pfam; PF04263; TPK_catalytic; 1. DR SUPFAM; SSF63999; SSF63999; 1. DR TIGRFAMs; TIGR01378; thi_PPkinase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 19 118 TPK_catalytic. FT {ECO:0000259|Pfam:PF04263}. SQ SEQUENCE 204 AA; 22903 MW; A6028BDE38B23370 CRC64; MQAVILANGE FPKSQKCLDL LKNAPFLIAC DGAVTSLHAL QFKPSVVIGD LDSIDSHLKA LYNPIRMSEQ NSNDLSKAFF YALNKGCDDF IFLGLNGKRE DHALANTFLL LEYFKFCQKI QAISDYGLFR VLETPFTLPS FKGEQISLFS LDLKAQFTSK NLKYPLKNLR LKTLFSGSLN EATDSYFSLS STPKSVVLVY QKFL // ID O25759_HELPY Unreviewed; 264 AA. AC O25759; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE SubName: Full=SpoOJ regulator (Soj) {ECO:0000313|EMBL:AAD08185.1}; GN OrderedLocusNames=HP_1139 {ECO:0000313|EMBL:AAD08185.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08185.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08185.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08185.1; -; Genomic_DNA. DR PIR; C64662; C64662. DR RefSeq; NP_207930.1; NC_000915.1. DR RefSeq; WP_000986731.1; NC_000915.1. DR ProteinModelPortal; O25759; -. DR STRING; 85962.HP1139; -. DR PaxDb; O25759; -. DR PRIDE; O25759; -. DR EnsemblBacteria; AAD08185; AAD08185; HP_1139. DR GeneID; 899676; -. DR KEGG; hpy:HP1139; -. DR PATRIC; 20593623; VBIHelPyl33062_1191. DR eggNOG; ENOG4107QJE; Bacteria. DR eggNOG; COG1192; LUCA. DR KO; K03496; -. DR OMA; GVIVPMQ; -. DR OrthoDB; EOG6D8BCX; -. DR BioCyc; HPY:HP1139-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR025669; AAA_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13614; AAA_31; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 264 AA; 29171 MW; C7ACC987D0207D79 CRC64; MMSEIIAVAN QKGGVGKTTT AVNLAASLAV HEKKILLIDF DPQANATSSL GFRRDKIDYD IYHVLIGRKQ ISQVILKTQM PFLDLVPSNL GLAGFEKTFY DSQDENKRGE LMLKNALESV VGLYDYIIID SPPALGPLTI NSLSAAHSVI IPIQCEFFAL EGTKLLLNTI RMLQKSTNPK LKIRGFLPTM HVPQLNLTKG VLAELFKYFD SEFFRDSATG EYIMIPKSVK LAESPSFGKP ILLYDIKSNG SIAYQKLAQS ILQG // ID O25134_HELPY Unreviewed; 458 AA. AC O25134; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 109. DE SubName: Full=Biotin carboxylase (AccC) {ECO:0000313|EMBL:AAD07434.1}; GN OrderedLocusNames=HP_0370 {ECO:0000313|EMBL:AAD07434.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07434.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07434.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07434.1; -; Genomic_DNA. DR PIR; B64566; B64566. DR RefSeq; NP_207168.1; NC_000915.1. DR RefSeq; WP_001045334.1; NC_000915.1. DR ProteinModelPortal; O25134; -. DR DIP; DIP-3539N; -. DR IntAct; O25134; 2. DR MINT; MINT-183671; -. DR STRING; 85962.HP0370; -. DR PaxDb; O25134; -. DR PRIDE; O25134; -. DR EnsemblBacteria; AAD07434; AAD07434; HP_0370. DR GeneID; 899220; -. DR KEGG; hpy:HP0370; -. DR PATRIC; 20591977; VBIHelPyl33062_0382. DR eggNOG; ENOG4105CER; Bacteria. DR eggNOG; COG0439; LUCA. DR KO; K01961; -. DR OMA; DSHAHAN; -. DR OrthoDB; EOG6CVV6Z; -. DR BioCyc; HPY:HP0370-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004075; F:biotin carboxylase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR InterPro; IPR004549; Acetyl_CoA_COase_biotin_COase. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR005481; BC-like_N. DR InterPro; IPR011764; Biotin_carboxylation_dom. DR InterPro; IPR005482; Biotin_COase_C. DR InterPro; IPR005479; CbamoylP_synth_lsu-like_ATP-bd. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR011054; Rudment_hybrid_motif. DR Pfam; PF02785; Biotin_carb_C; 1. DR Pfam; PF00289; Biotin_carb_N; 1. DR Pfam; PF02786; CPSase_L_D2; 1. DR SMART; SM00878; Biotin_carb_C; 1. DR SUPFAM; SSF51246; SSF51246; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR00514; accC; 1. DR PROSITE; PS50975; ATP_GRASP; 1. DR PROSITE; PS50979; BC; 1. DR PROSITE; PS00866; CPSASE_1; 1. DR PROSITE; PS00867; CPSASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 15 458 Biotin carboxylation. FT {ECO:0000259|PROSITE:PS50979}. FT DOMAIN 134 332 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 458 AA; 51002 MW; 16E22664EC9E15BE CRC64; MNKVNKENKK VEKKELSRIL IANRGEIALR AIQTIQEMGK ESIAIYSIAD KDAHYLNTAS AKVCIGGAKS SESYLNIPAI ISAAELFEAD AIFPGYGFLS ENQNFVEICS HHSLEFIGPS AKVMALMSDK SKAKSVMKEA GMPVIEGSDG LLKSYQEAEE IADKIGYPVI IKAAAGGGGR GMRVVGDKSK LKNLYLAAET EALSAFGDGS VYLEKFINKP KHIEVQILAD KHGNVIHVGE RDCSVQRRQQ KLIEETPAVV LEEGVRERLL ETAIKAAKYI GYVGAGTFEF LLDSNMKDFY FMEMNTRLQV EHTISEMVSG LNLIEWMIKI AQGEKLPKQE SFSLKGHAIE CRITAEDPKK FYPSPGKITE WIAPGGVNVR LDSHAHANYV VPTHYDSMIG KLIVWGENRE RAIAKMKRAL KEFKVEGIKT TIPFHLEMLE NADFRQAKIH TKYLEENF // ID O25053_HELPY Unreviewed; 185 AA. AC O25053; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 92. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07349.1}; GN OrderedLocusNames=HP_0276 {ECO:0000313|EMBL:AAD07349.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07349.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07349.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5- CC phosphate = 1-C-(3-indolyl)-glycerol 3-phosphate + CO(2) + H(2)O. CC {ECO:0000256|SAAS:SAAS00046698}. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 4/5. CC {ECO:0000256|SAAS:SAAS00046694}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07349.1; -; Genomic_DNA. DR PIR; D64554; D64554. DR RefSeq; NP_207074.1; NC_000915.1. DR RefSeq; WP_001155742.1; NC_018939.1. DR ProteinModelPortal; O25053; -. DR DIP; DIP-3325N; -. DR IntAct; O25053; 7. DR MINT; MINT-175004; -. DR STRING; 85962.HP0276; -. DR PaxDb; O25053; -. DR DNASU; 898811; -. DR EnsemblBacteria; AAD07349; AAD07349; HP_0276. DR GeneID; 898811; -. DR KEGG; heo:C694_01395; -. DR KEGG; hpy:HP0276; -. DR PATRIC; 20591779; VBIHelPyl33062_0287. DR KO; K01609; -. DR OMA; MLSYEML; -. DR OrthoDB; EOG68M4GF; -. DR BioCyc; HPY:HP0276-MONOMER; -. DR UniPathway; UPA00035; UER00043. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004425; F:indole-3-glycerol-phosphate synthase activity; IEA:InterPro. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR013798; Indole-3-glycerol_P_synth. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00218; IGPS; 1. DR SUPFAM; SSF51366; SSF51366; 1. PE 4: Predicted; KW Amino-acid biosynthesis {ECO:0000256|SAAS:SAAS00046697}; KW Aromatic amino acid biosynthesis {ECO:0000256|SAAS:SAAS00046697}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Decarboxylase {ECO:0000256|SAAS:SAAS00228158}; KW Lyase {ECO:0000256|SAAS:SAAS00228158}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Tryptophan biosynthesis {ECO:0000256|SAAS:SAAS00046697}. FT DOMAIN 86 156 IGPS. {ECO:0000259|Pfam:PF00218}. SQ SEQUENCE 185 AA; 21035 MW; D5C63D5E33014535 CRC64; MQEIGILENL QKSLALKEGM LSYEMLGKSL SYNPYLPRVI PQTKDCVFVT PDEVLEKLLK ENTHTDCVIV NFKGLYEIGA PSVFNLEVLG LLRRHASSLI VHQDLFISHY QLLESLVQGS DGVVLDEELL KEDLKGMVEF SWRLGLSVFV ETHKQDYTHL KDLGVLGVLE KVPHSQNQKR IVFLD // ID O25873_HELPY Unreviewed; 182 AA. AC O25873; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08331.1}; GN OrderedLocusNames=HP_1286 {ECO:0000313|EMBL:AAD08331.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08331.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08331.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the UPF0312 family. CC {ECO:0000256|SAAS:SAAS00564357}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08331.1; -; Genomic_DNA. DR PIR; F64680; F64680. DR RefSeq; NP_208078.1; NC_000915.1. DR RefSeq; WP_000709479.1; NC_018939.1. DR ProteinModelPortal; O25873; -. DR DIP; DIP-3695N; -. DR IntAct; O25873; 8. DR MINT; MINT-159302; -. DR STRING; 85962.HP1286; -. DR PaxDb; O25873; -. DR EnsemblBacteria; AAD08331; AAD08331; HP_1286. DR GeneID; 898792; -. DR KEGG; heo:C694_06645; -. DR KEGG; hpy:HP1286; -. DR PATRIC; 20593951; VBIHelPyl33062_1346. DR eggNOG; ENOG4108YYC; Bacteria. DR eggNOG; COG2353; LUCA. DR OMA; DKGNGKL; -. DR OrthoDB; EOG6HB9W0; -. DR BioCyc; HPY:HP1286-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0052151; P:positive regulation by symbiont of host apoptotic process; IDA:CACAO. DR Gene3D; 2.40.128.110; -; 1. DR InterPro; IPR007372; Lipid/polyisoprenoid-bd_YceI. DR Pfam; PF04264; YceI; 1. DR SMART; SM00867; YceI; 1. DR SUPFAM; SSF101874; SSF101874; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 19 180 YceI. {ECO:0000259|SMART:SM00867}. SQ SEQUENCE 182 AA; 20615 MW; 25A8DF76B288A8DA CRC64; MKKALISTLF GVSLAFAKPY TIDKANSSVW FEVKHFTFNE TRGAFDNFDG KIDLEPNTKM LSVFEGNIDV KSVNTRDRKR DNHLKTADFF DVVKYPKGSF KMTKYEDGKI YGDLTLRGVT KPVVLEAKIQ APLQNPMNKK EFMVLQAEGK INRKDFGIGK TFSDAVVGDE VKIELKLEAY AQ // ID O24862_HELPY Unreviewed; 787 AA. AC O24862; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 91. DE SubName: Full=VirB4 homolog (VirB4) {ECO:0000313|EMBL:AAD07086.1}; GN OrderedLocusNames=HP_0017 {ECO:0000313|EMBL:AAD07086.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07086.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07086.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O24883:HP_0042; NbExp=2; IntAct=EBI-528030, EBI-528018; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07086.1; -; Genomic_DNA. DR PIR; A64522; A64522. DR RefSeq; NP_206819.1; NC_000915.1. DR RefSeq; WP_000890508.1; NC_018939.1. DR ProteinModelPortal; O24862; -. DR DIP; DIP-3110N; -. DR IntAct; O24862; 2. DR MINT; MINT-174442; -. DR STRING; 85962.HP0017; -. DR PaxDb; O24862; -. DR EnsemblBacteria; AAD07086; AAD07086; HP_0017. DR GeneID; 899097; -. DR KEGG; heo:C694_00080; -. DR KEGG; hpy:HP0017; -. DR PATRIC; 20591227; VBIHelPyl33062_0015. DR eggNOG; ENOG4105EJX; Bacteria. DR eggNOG; COG3451; LUCA. DR KO; K12053; -. DR OMA; FKANSWG; -. DR OrthoDB; EOG6BPDBZ; -. DR BioCyc; HPY:HP0017-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR004346; CagE_TrbE_VirB. DR InterPro; IPR018145; CagE_TrbE_VirB_cntrl_dom. DR InterPro; IPR002543; FtsK_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF03135; CagE_TrbE_VirB; 1. DR Pfam; PF01580; FtsK_SpoIIIE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00929; VirB4_CagE; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 176 375 CagE_TrbE_VirB. FT {ECO:0000259|Pfam:PF03135}. SQ SEQUENCE 787 AA; 90270 MW; F8CADEF29EC39EA7 CRC64; MLEKLLSAIK QKVSNYFLGV LPKSYSMSEE NNILGLYDEH FLLTKNENLV GILRLEGVSY THLSTEQLQD LFTERQMALD SLEKVVARLV VKRRKIDHQQ NIQSDSQYLQ AILNQFENKE VYENQYFLVL ESTHSLHGVL EHKKKSLMHA NRENFKDILS YKAHFLQETL KSLEIQLKNY APKLLSSKEV LNFYAEYING FDLPLKPLVG GYLSDSYIAS SITFEKDYFI QESFNQKTYN RLIGIKAYES ERITSIAIGA LLYQETPLDI IFSIEPMSVH KTLSFLKERA KFSMSNLVKN ELLEYQELVK TKRLSMQKFA LNILIKAPSL ENLDAQTSLV LGLLFKENLV GVIETFGLKG GYFSFFPERI HLNHRLRFLT SKALACLMVF ERQNLGFKAN SWGNSPLSVF KNLDYSPFLF NFHNQEVSHK NAKEIARVNG HTLIIGATGS GKSTLISFLM MSALKYQNMR LLAFDRMQGL YSFTKFFKGH YHDGQSFSIN PFCLEPNLQN LEFLQSFFLS MFDLAPSRDK EALEDMNAIS SAIKSLYETL YPKAFSLLDF KETLKRTSSN QLGLSLEPYL NNPLFNALND AFNSNAFLNV INLDTITQNP KDLGLLAYYL FYKILEESRK NDSGFLVFLD EFKSYVENDL LNTKINALIT QARKANGVVV LALQDIYQLS GVKNAHSFLS NMGTLILYPQ KNARELKHNF NVPLSETEIS FLENTPLYAR QVLVKNLGNG SSNMIDVSLE SLGRYLKIFN SDSSHVSKVK ALQKDYPTEW REKLLRS // ID O24930_HELPY Unreviewed; 581 AA. AC O24930; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=2',3'-cyclic-nucleotide 2'-phosphodiesterase (CpdB) {ECO:0000313|EMBL:AAD07174.1}; GN OrderedLocusNames=HP_0104 {ECO:0000313|EMBL:AAD07174.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07174.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07174.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the 5'-nucleotidase family. CC {ECO:0000256|RuleBase:RU362119}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07174.1; -; Genomic_DNA. DR PIR; H64532; H64532. DR RefSeq; NP_206904.1; NC_000915.1. DR RefSeq; WP_000737638.1; NC_000915.1. DR ProteinModelPortal; O24930; -. DR STRING; 85962.HP0104; -. DR PaxDb; O24930; -. DR PRIDE; O24930; -. DR EnsemblBacteria; AAD07174; AAD07174; HP_0104. DR GeneID; 899119; -. DR KEGG; hpy:HP0104; -. DR PATRIC; 20591421; VBIHelPyl33062_0110. DR eggNOG; ENOG4107RNS; Bacteria. DR eggNOG; COG0737; LUCA. DR KO; K01119; -. DR OMA; TSDIHGR; -. DR OrthoDB; EOG6M0T1R; -. DR BioCyc; HPY:HP0104-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW. DR GO; GO:0009166; P:nucleotide catabolic process; IEA:InterPro. DR Gene3D; 3.60.21.10; -; 1. DR Gene3D; 3.90.780.10; -; 1. DR InterPro; IPR008334; 5'-Nucleotdase_C. DR InterPro; IPR006146; 5'-Nucleotdase_CS. DR InterPro; IPR006179; 5_nucleotidase/apyrase. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR PANTHER; PTHR11575; PTHR11575; 1. DR Pfam; PF02872; 5_nucleotid_C; 1. DR Pfam; PF00149; Metallophos; 1. DR PRINTS; PR01607; APYRASEFAMLY. DR SUPFAM; SSF55816; SSF55816; 1. DR SUPFAM; SSF56300; SSF56300; 1. DR PROSITE; PS00786; 5_NUCLEOTIDASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|RuleBase:RU362119}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU362119}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 25 241 Metallophos. {ECO:0000259|Pfam:PF00149}. FT DOMAIN 337 482 5_nucleotid_C. FT {ECO:0000259|Pfam:PF02872}. SQ SEQUENCE 581 AA; 65799 MW; AC5352C855450E90 CRC64; MKKLVLVIFL TLALSISAKE VKIVFLETSD IHGRLFSYDY AIGEQKPNNG LTRIATLIKK QRAENKNVVL IDSGDLLQGN SAELFNDEPI HPLVRAENDL KFDIRVLGNH EFNFSKDFLE KNIKGFNGDV MNANIIKIAD NKPFVKPYII KKIDGVRVAV VGYVVAHIPT WEASTPEHFA GLKFLDAEEA LKKTLKELKG KYDILIGAFH LGREDEKGGD GIPDLAKKFP QFDIIFAGHE HAVYNTKVGK VHTIEPGAYG AYLAKGVVVF DTKTKKKIIT TENLPTKDVP EDEELAKKYE YVDKKSKEYA NEVVGEVTKT FIDRPDFITG EEKITTMPTA ALQETPVIEL INKVQKYYAK ADVSAAALFN FGANLKKGPF KRKDVTYIYK FANTLIGVRI TGENLLKYME WSYRFYNQLQ PGDLTISFNE NIRGYNFDMF SGVKYQVDVT KPAGQRIINP TINNKPIDPK AIYKLAINNY RFGTLSTTLN LVTDADRYYN SYDELQDNGQ IRDLIIKYIT EEKGGKVTPE LEGNWEIINY DFKNPLLEKL REKLKEGSIK IPTSKDGRTL NVKSIKESEV K // ID O25307_HELPY Unreviewed; 218 AA. AC O25307; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE RecName: Full=Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; DE EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; DE AltName: Full=DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; GN Name=nth {ECO:0000256|HAMAP-Rule:MF_00942}; GN OrderedLocusNames=HP_0585 {ECO:0000313|EMBL:AAD07651.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07651.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07651.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: DNA repair enzyme that has both DNA N-glycosylase CC activity and AP-lyase activity. The DNA N-glycosylase activity CC releases various damaged pyrimidines from DNA by cleaving the N- CC glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The CC AP-lyase activity cleaves the phosphodiester bond 3' to the AP CC site by a beta-elimination, leaving a 3'-terminal unsaturated CC sugar and a product with a terminal 5'-phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00942}. CC -!- CATALYTIC ACTIVITY: The C-O-P bond 3' to the apurinic or CC apyrimidinic site in DNA is broken by a beta-elimination reaction, CC leaving a 3'-terminal unsaturated sugar and a product with a CC terminal 5'-phosphate. {ECO:0000256|HAMAP-Rule:MF_00942, CC ECO:0000256|PIRNR:PIRNR001435}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00942, CC ECO:0000256|PIRNR:PIRNR001435}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000256|HAMAP-Rule:MF_00942, CC ECO:0000256|PIRNR:PIRNR001435}; CC -!- SIMILARITY: Belongs to the Nth/MutY family. {ECO:0000256|HAMAP- CC Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}. CC -!- SIMILARITY: Contains 1 HhH domain. {ECO:0000256|HAMAP- CC Rule:MF_00942}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07651.1; -; Genomic_DNA. DR PIR; A64593; A64593. DR RefSeq; NP_207380.1; NC_000915.1. DR RefSeq; WP_000781680.1; NC_000915.1. DR ProteinModelPortal; O25307; -. DR DIP; DIP-3173N; -. DR IntAct; O25307; 2. DR MINT; MINT-159772; -. DR STRING; 85962.HP0585; -. DR PaxDb; O25307; -. DR PRIDE; O25307; -. DR EnsemblBacteria; AAD07651; AAD07651; HP_0585. DR GeneID; 899002; -. DR KEGG; hpy:HP0585; -. DR PATRIC; 20592445; VBIHelPyl33062_0611. DR eggNOG; ENOG4105CSM; Bacteria. DR eggNOG; COG0177; LUCA. DR KO; K10773; -. DR OMA; HHALILF; -. DR OrthoDB; EOG6H4KC5; -. DR BioCyc; HPY:HP0585-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019104; F:DNA N-glycosylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.1670.10; -; 1. DR Gene3D; 1.10.340.30; -; 1. DR HAMAP; MF_00942; Nth; 1. DR InterPro; IPR011257; DNA_glycosylase. DR InterPro; IPR004035; Endouclease-III_FeS-bd_BS. DR InterPro; IPR003651; Endouclease3_FeS-loop_motif. DR InterPro; IPR003265; HhH-GPD_domain. DR InterPro; IPR000445; HhH_motif. DR InterPro; IPR023170; HTH_base_excis_C. DR InterPro; IPR005759; Nth. DR Pfam; PF10576; EndIII_4Fe-2S; 1. DR Pfam; PF00633; HHH; 1. DR Pfam; PF00730; HhH-GPD; 1. DR PIRSF; PIRSF001435; Nth; 1. DR SMART; SM00478; ENDO3c; 1. DR SMART; SM00525; FES; 1. DR SUPFAM; SSF48150; SSF48150; 1. DR TIGRFAMs; TIGR01083; nth; 1. DR PROSITE; PS00764; ENDONUCLEASE_III_1; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00942}; KW Endonuclease {ECO:0000313|EMBL:AAD07651.1}; KW Glycosidase {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435, ECO:0000313|EMBL:AAD07651.1}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00942}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00942, KW ECO:0000256|PIRNR:PIRNR001435}; KW Nuclease {ECO:0000313|EMBL:AAD07651.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 46 192 ENDO3c. {ECO:0000259|SMART:SM00478}. FT DOMAIN 108 135 HhH. {ECO:0000256|HAMAP-Rule:MF_00942}. FT METAL 194 194 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 201 201 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 204 204 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 210 210 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. SQ SEQUENCE 218 AA; 24508 MW; 63E52C096540F7B2 CRC64; MKMGLKRAKT HQKAQQIKEL LLKHYPNQTT ELRHKNPYEL LVATILSAQC TDARVNQITP KLFEKYPSVN DLALASLEEV KEIIKSVSYF NNKSKHLISM AQKVVRDFKG VIPSTQKELM SLDGVGQKTA NVVLSVCFDA NCIAVDTHVF RATHRLGLSN AKDPIKTEEE LSDLFKDNLS KLHHALILFG RYTCKAKNPL CGACFLKEFC VSKASFKA // ID O25181_HELPY Unreviewed; 228 AA. AC O25181; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 86. DE SubName: Full=Protein phosphatase 2C homolog (Ptc1) {ECO:0000313|EMBL:AAD07498.1}; GN OrderedLocusNames=HP_0431 {ECO:0000313|EMBL:AAD07498.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07498.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07498.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07498.1; -; Genomic_DNA. DR PIR; G64573; G64573. DR RefSeq; NP_207229.1; NC_000915.1. DR RefSeq; WP_001863367.1; NC_018939.1. DR ProteinModelPortal; O25181; -. DR DIP; DIP-3427N; -. DR IntAct; O25181; 2. DR MINT; MINT-167490; -. DR STRING; 85962.HP0431; -. DR PaxDb; O25181; -. DR EnsemblBacteria; AAD07498; AAD07498; HP_0431. DR GeneID; 900269; -. DR KEGG; heo:C694_02190; -. DR KEGG; hpy:HP0431; -. DR PATRIC; 20592121; VBIHelPyl33062_0449. DR eggNOG; ENOG4106369; Bacteria. DR eggNOG; ENOG410XPCW; LUCA. DR OMA; TCLFAVV; -. DR OrthoDB; EOG6QP10Q; -. DR BioCyc; HPY:HP0431-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.60.40.10; -; 1. DR InterPro; IPR001932; PPM-type_phosphatase_dom. DR SMART; SM00332; PP2Cc; 1. DR SUPFAM; SSF81606; SSF81606; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 220 PPM-type phosphatase. FT {ECO:0000259|SMART:SM00332}. SQ SEQUENCE 228 AA; 25963 MW; 56F3CF2EB4A3F261 CRC64; MRDFKAFGAS IRGVYHAYAR LPNQDAFLIR KNQKGLLLVL CDGLGSKKDS QIGAKKLCES VEKALNAIDI QGCNLALLNK VIFSIWECLL YPLEVRNALS TLQLVFIGKE KAFIGKVGDG LLAVLGKEHR LLREDKQDLV HFTTPFDRNT LLTWEVLERK KIDALFLCTD GLDESLIDAR RLDFVKDIIS EFKHKKKASK KCYVLLKNHK FYDDTSLIIA YRKGSLWS // ID O26064_HELPY Unreviewed; 412 AA. AC O26064; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 115. DE RecName: Full=Cytochrome b {ECO:0000256|RuleBase:RU003385}; GN OrderedLocusNames=HP_1539 {ECO:0000313|EMBL:AAD08579.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08579.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08579.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Component of the ubiquinol-cytochrome c reductase CC complex (complex III or cytochrome b-c1 complex), which is a CC respiratory chain that generates an electrochemical potential CC coupled to ATP synthesis. {ECO:0000256|RuleBase:RU003385}. CC -!- COFACTOR: CC Name=heme; Xref=ChEBI:CHEBI:30413; CC Evidence={ECO:0000256|RuleBase:RU003385}; CC Note=Binds 2 heme groups non-covalently. CC {ECO:0000256|RuleBase:RU003385}; CC -!- SUBUNIT: The main subunits of complex b-c1 are: cytochrome b, CC cytochrome c1 and the Rieske protein. CC {ECO:0000256|RuleBase:RU003385}. CC -!- SIMILARITY: Belongs to the cytochrome b family. CC {ECO:0000256|RuleBase:RU003385}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08579.1; -; Genomic_DNA. DR PIR; C64712; C64712. DR RefSeq; NP_208330.1; NC_000915.1. DR RefSeq; WP_000807891.1; NC_018939.1. DR ProteinModelPortal; O26064; -. DR STRING; 85962.HP1539; -. DR PaxDb; O26064; -. DR EnsemblBacteria; AAD08579; AAD08579; HP_1539. DR GeneID; 899752; -. DR KEGG; heo:C694_07975; -. DR KEGG; hpy:HP1539; -. DR PATRIC; 20594501; VBIHelPyl33062_1618. DR eggNOG; ENOG4105DJ5; Bacteria. DR eggNOG; COG1290; LUCA. DR KO; K00412; -. DR OMA; YLGVQPP; -. DR OrthoDB; EOG6P3338; -. DR BioCyc; HPY:HP1539-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0070469; C:respiratory chain; IEA:UniProtKB-KW. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro. DR Gene3D; 1.20.810.10; -; 1. DR InterPro; IPR005798; Cyt_b/b6_C. DR InterPro; IPR005797; Cyt_b/b6_N. DR InterPro; IPR027387; Cytb/b6-like. DR InterPro; IPR016174; Di-haem_cyt_TM. DR Pfam; PF00032; Cytochrom_B_C; 1. DR Pfam; PF00033; Cytochrome_B; 1. DR SUPFAM; SSF81342; SSF81342; 1. DR SUPFAM; SSF81648; SSF81648; 1. DR PROSITE; PS51003; CYTB_CTER; 1. DR PROSITE; PS51002; CYTB_NTER; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Electron transport {ECO:0000256|RuleBase:RU003385}; KW Heme {ECO:0000256|RuleBase:RU003385}; KW Iron {ECO:0000256|RuleBase:RU003385}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|RuleBase:RU003385}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Respiratory chain {ECO:0000256|RuleBase:RU003385}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003385}. FT TRANSMEM 39 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 97 118 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 146 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 153 171 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 191 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 249 272 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 313 337 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 349 369 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 381 403 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 10 223 CYTB_NTER. {ECO:0000259|PROSITE:PS51002}. FT DOMAIN 239 411 CYTB_CTER. {ECO:0000259|PROSITE:PS51003}. SQ SEQUENCE 412 AA; 47511 MW; 954646D95A1F925A CRC64; MAEIKKAKNL GEWLDMRLGT NKLVKVLMTE YWIPKNINFL WAMGVILLTL FGVLVVSGIF LLMYYKPDAK MAFDSVNFTI MQEVAYGWLW RHMHATAASM IFVIIYIHMF VGIYYGSYKK GREMIWISGM ILFVVFSAEA FSGYMLPWGQ MSYWAAAVIT NLFGGIPFIG ADVVEWIRGN YVVADSTLTR FFMLHVFLLP IAIILLVGVH FYSLRIPHVN NQEGEEIDFE LEEKKFIEGK KKESKVIPFW PVFLSKDIFV VCAFMVFFFY LVCYHYDFAM DPINFERANS LKTPPHIYPE WYFLWSYEVL RGFFFSADLG LMAFGVAQVI FFLLPFLDRS PVVAPAHKRP AFMVWFWLVI IDMIVLTIYG KLPPLGIGKY IGLAGSITFL ALFFVVLPII TIAESKKQGG VR // ID O25447_HELPY Unreviewed; 119 AA. AC O25447; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 76. DE SubName: Full=Polar flagellin (FlaG) {ECO:0000313|EMBL:AAD07799.1}; GN OrderedLocusNames=HP_0751 {ECO:0000313|EMBL:AAD07799.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07799.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07799.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07799.1; -; Genomic_DNA. DR PIR; G64613; G64613. DR RefSeq; NP_207544.1; NC_000915.1. DR RefSeq; WP_000245963.1; NC_018939.1. DR ProteinModelPortal; O25447; -. DR DIP; DIP-3720N; -. DR IntAct; O25447; 1. DR MINT; MINT-159649; -. DR STRING; 85962.HP0751; -. DR PaxDb; O25447; -. DR EnsemblBacteria; AAD07799; AAD07799; HP_0751. DR GeneID; 898942; -. DR KEGG; heo:C694_03865; -. DR KEGG; hpy:HP0751; -. DR PATRIC; 20592791; VBIHelPyl33062_0784. DR eggNOG; ENOG4105VFY; Bacteria. DR eggNOG; COG1334; LUCA. DR KO; K06603; -. DR OMA; IDPEQYK; -. DR OrthoDB; EOG6ZPT31; -. DR BioCyc; HPY:HP0751-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR Gene3D; 3.30.160.170; -; 1. DR InterPro; IPR005186; FlaG. DR Pfam; PF03646; FlaG; 1. DR SUPFAM; SSF160214; SSF160214; 1. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD07799.1}; KW Cilium {ECO:0000313|EMBL:AAD07799.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07799.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 119 AA; 13392 MW; 103E2AE1EF6AA0DC CRC64; MVNEVQGIGI PTSHTSVQTT PTKEISRTNT INTVDESKTT IDPDQYKPKL ELLSERLNEE MKRIGTDINF SYNDTIKGLV VSVKDANGDK VIREIPSKEA VELMQRMRDV IGIIFDKRG // ID O25744_HELPY Unreviewed; 606 AA. AC O25744; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE SubName: Full=Flagellar hook-associated protein 1 (HAP1) (FlgK) {ECO:0000313|EMBL:AAD08163.1}; GN OrderedLocusNames=HP_1119 {ECO:0000313|EMBL:AAD08163.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08163.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08163.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08163.1; -; Genomic_DNA. DR PIR; G64659; G64659. DR RefSeq; NP_207910.1; NC_000915.1. DR RefSeq; WP_000508899.1; NC_018939.1. DR ProteinModelPortal; O25744; -. DR DIP; DIP-3213N; -. DR IntAct; O25744; 4. DR MINT; MINT-174659; -. DR STRING; 85962.HP1119; -. DR PaxDb; O25744; -. DR EnsemblBacteria; AAD08163; AAD08163; HP_1119. DR GeneID; 899656; -. DR KEGG; heo:C694_05775; -. DR KEGG; hpy:HP1119; -. DR PATRIC; 20593581; VBIHelPyl33062_1170. DR eggNOG; ENOG4105E1Q; Bacteria. DR eggNOG; COG1256; LUCA. DR KO; K02396; -. DR OMA; KPQAAYM; -. DR OrthoDB; EOG6NWBMH; -. DR BioCyc; HPY:HP1119-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009424; C:bacterial-type flagellum hook; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR InterPro; IPR002371; FlgK. DR Pfam; PF06429; Flg_bbr_C; 1. DR PRINTS; PR01005; FLGHOOKAP1. DR TIGRFAMs; TIGR02492; flgK_ends; 1. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD08163.1}; KW Cilium {ECO:0000313|EMBL:AAD08163.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08163.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 554 603 Flg_bbr_C. {ECO:0000259|Pfam:PF06429}. SQ SEQUENCE 606 AA; 68350 MW; 45119E9E271241EC CRC64; MGGILSSLNT SYTGLQAHQS MVDVTGNNIS NASDEFYSRQ RVIAKPQAAY MYGTKNVNMG VDVEAIERVH DEFVFARYTK ANYENTYYDT EFSHLKEASA YFPDIDEASL FTDLQDYFNS WKELSKNAKD SAQKQALAQK TEALTHNIKD TRERLTTLQH KASEELKSVI KEVNSLGSQI AEINKRIKEV ENNKSLKHAN ELRDKRDELE FHLRELLGGN VFKSSIKTHS LTDKDSADFD ESYNLNIGHG FNIIDGSIFH PLVVKESENK GGLNQVYFQS DDFKVTNITD KLNQGRVGAL LNVYNDGSNG TLKGKLQDYI DLLDSFAKGL IESTNAIYAQ SASHYIEGEP VEFNSDEAFK DTNYNIKNGS FDLIAYNTDG KEIARKTIAI TPITTMNDII QAINANTDDN QDNNTENDFD DYFTAGFNNE TKKFVIQPKN ASQGLFVSMK DNGTNFMGAL KLNPFFQGDD ASNISLNKEY KKEPTTIRPW LAPINGNFDV ANMMQQLQYD SVDFYNDKFD IKPMKISEFY QFLTGKINTD AEKSGRILDT KKSMLETIKK EQLSISQVSV DEEMVNLIKF QSGYAANAKV ITAIDRMIDT LLGIKQ // ID O25676_HELPY Unreviewed; 255 AA. AC O25676; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 108. DE SubName: Full=Alternative transcription initiation factor, sigma-F (FliA) {ECO:0000313|EMBL:AAD08076.1}; GN OrderedLocusNames=HP_1032 {ECO:0000313|EMBL:AAD08076.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08076.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08076.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the sigma-70 factor family. CC {ECO:0000256|SAAS:SAAS00565852}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08076.1; -; Genomic_DNA. DR PIR; H64648; H64648. DR RefSeq; NP_207822.1; NC_000915.1. DR RefSeq; WP_000602430.1; NC_018939.1. DR ProteinModelPortal; O25676; -. DR DIP; DIP-3621N; -. DR IntAct; O25676; 13. DR MINT; MINT-161815; -. DR STRING; 85962.HP1032; -. DR PaxDb; O25676; -. DR EnsemblBacteria; AAD08076; AAD08076; HP_1032. DR GeneID; 899567; -. DR KEGG; heo:C694_05340; -. DR KEGG; hpy:HP1032; -. DR PATRIC; 20593401; VBIHelPyl33062_1081. DR eggNOG; ENOG4105DN4; Bacteria. DR eggNOG; COG1191; LUCA. DR KO; K02405; -. DR OMA; ESHEYRR; -. DR OrthoDB; EOG661H9F; -. DR BioCyc; HPY:HP1032-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR014284; RNA_pol_sigma-70_dom. DR InterPro; IPR000943; RNA_pol_sigma70. DR InterPro; IPR007627; RNA_pol_sigma70_r2. DR InterPro; IPR007630; RNA_pol_sigma70_r4. DR InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG. DR InterPro; IPR013325; RNA_pol_sigma_r2. DR InterPro; IPR013324; RNA_pol_sigma_r3_r4. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF04542; Sigma70_r2; 1. DR Pfam; PF04545; Sigma70_r4; 1. DR PRINTS; PR00046; SIGMA70FCT. DR SUPFAM; SSF88659; SSF88659; 2. DR SUPFAM; SSF88946; SSF88946; 1. DR TIGRFAMs; TIGR02479; FliA_WhiG; 1. DR TIGRFAMs; TIGR02937; sigma70-ECF; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00457605}; KW Initiation factor {ECO:0000313|EMBL:AAD08076.1}; KW Protein biosynthesis {ECO:0000313|EMBL:AAD08076.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Sigma factor {ECO:0000256|SAAS:SAAS00458134}; KW Transcription {ECO:0000256|SAAS:SAAS00458134}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00458134}. FT DOMAIN 44 110 Sigma70_r2. {ECO:0000259|Pfam:PF04542}. FT DOMAIN 199 248 Sigma70_r4. {ECO:0000259|Pfam:PF04545}. SQ SEQUENCE 255 AA; 29442 MW; 3840B358BE31CDD2 CRC64; MILMMENRMP KGIQKTETSE KNIEKVLNAY DKQQHHHQDD LAIQYLPAVR AMAFRLKERL PSSIDFNDLV SIGTEELIKL ARRYESALND SFWGYAKTRV NGAMLDYLRS LDVISRSSRK LIKSIDIEIT KHLNEHGKEP SDAYLAQTLG ENIEKIKEAK TASDIYALVP IDEQFNAIEQ DEITKKIEAE ELLEHVQKAL NQMSEREQIL IQLYYFEELN LSEIKEILGI TESRISQIIK EVIKKVRKSL GVDHG // ID O25032_HELPY Unreviewed; 516 AA. AC O25032; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 125. DE SubName: Full=Oligopeptide ABC transporter, ATP-binding protein (OppD) {ECO:0000313|EMBL:AAD07317.1}; GN OrderedLocusNames=HP_0250 {ECO:0000313|EMBL:AAD07317.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07317.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07317.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. CC {ECO:0000256|SAAS:SAAS00555009}. CC -!- SIMILARITY: Contains 2 ABC transporter domains. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07317.1; -; Genomic_DNA. DR PIR; B64551; B64551. DR RefSeq; NP_207048.1; NC_000915.1. DR RefSeq; WP_000889818.1; NC_018939.1. DR ProteinModelPortal; O25032; -. DR DIP; DIP-3283N; -. DR IntAct; O25032; 4. DR MINT; MINT-185002; -. DR STRING; 85962.HP0250; -. DR PaxDb; O25032; -. DR EnsemblBacteria; AAD07317; AAD07317; HP_0250. DR GeneID; 898761; -. DR KEGG; heo:C694_01265; -. DR KEGG; hpy:HP0250; -. DR PATRIC; 20591725; VBIHelPyl33062_0261. DR eggNOG; ENOG4108JQ6; Bacteria. DR eggNOG; COG1123; LUCA. DR KO; K13896; -. DR OMA; WFPIRKG; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0250-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0015833; P:peptide transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013563; Oligopep_ABC_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 2. DR Pfam; PF08352; oligo_HPY; 2. DR SMART; SM00382; AAA; 2. DR SUPFAM; SSF52540; SSF52540; 2. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 2. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07317.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07317.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transport {ECO:0000256|SAAS:SAAS00554993}. FT DOMAIN 2 246 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. FT DOMAIN 264 512 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 516 AA; 58123 MW; 99524B39BCE2317A CRC64; MLEIKNLNCV LNAHFSLQNI NISLNPSERV AIVGESGSGK SSIANIIMRL NPRFKPHNGE VLFETTNLLK ESEEFMQHLR GNAIAYIAQD PLSSLNPLHK IGKQMSEAYF LHYKNASKTL LKEQVLNAMK QVQLDEKFLD RYPYELSGGQ RQRVCIAMGI INAPKLLICD EPTTALDAQI QNQILDLPKQ LSAEKNIALL FISHDLKAVK RLADRVYVLK KGEIVETNLT KDLFNDPKHE YSKLLIQASN LPAKNLKALD ETLLEVKDFS VYYLQKRFFR PSLKKPLIAS VNFSLKAKEN IGIIGESGSG KSSLALGLLK LALNSGEEKI LGQSVGSLNS KAFKPYRKIL QMVFQDPYAS LNPRLSIQSI LTEALRFAYP KASKEEWHHL AKLCLEEVCL SHELLNSYAY ELSGGERQRV AIARAIALKP KIILLDEPTS ALDKSIQKSV LELLLDLQEK QDLSYLFISH DLDVIKAFCD KVLVISEGKV VEMNTIKEVF DNPKHAYTKR LLESRL // ID O25743_HELPY Unreviewed; 567 AA. AC O25743; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 105. DE SubName: Full=Gamma-glutamyltranspeptidase (Ggt) {ECO:0000313|EMBL:AAD08162.1}; GN OrderedLocusNames=HP_1118 {ECO:0000313|EMBL:AAD08162.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08162.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08162.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2QM6, ECO:0000213|PDB:2QMC} RP X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) OF 25-379 AND 380-567. RX PubMed=17960917; DOI=10.1021/bi701599e; RA Morrow A.L., Williams K., Sand A., Boanca G., Barycki J.J.; RT "Characterization of Helicobacter pylori gamma-glutamyltranspeptidase RT reveals the molecular basis for substrate specificity and a critical RT role for the tyrosine 433-containing loop in catalysis."; RL Biochemistry 46:13407-13414(2007). RN [3] {ECO:0000213|PDB:2NQO} RP X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 27-379 AND 380-567. RX PubMed=17107958; DOI=10.1074/jbc.M607694200; RA Boanca G., Sand A., Okada T., Suzuki H., Kumagai H., Fukuyama K., RA Barycki J.J.; RT "Autoprocessing of Helicobacter pylori gamma-glutamyltranspeptidase RT leads to the formation of a threonine-threonine catalytic dyad."; RL J. Biol. Chem. 282:534-541(2007). RN [4] {ECO:0000213|PDB:3FNM} RP X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS) OF 25-379 AND 380-567. RX PubMed=19256527; DOI=10.1021/bi8014955; RA Williams K., Cullati S., Sand A., Biterova E.I., Barycki J.J.; RT "Crystal structure of acivicin-inhibited gamma-glutamyltranspeptidase RT reveals critical roles for its C-terminus in autoprocessing and RT catalysis."; RL Biochemistry 48:2459-2467(2009). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08162.1; -; Genomic_DNA. DR PIR; F64659; F64659. DR RefSeq; NP_207909.1; NC_000915.1. DR RefSeq; WP_001254471.1; NC_018939.1. DR PDB; 2NQO; X-ray; 1.90 A; A/C=27-379, B/D=380-567. DR PDB; 2QM6; X-ray; 1.60 A; A/C=25-379, B/D=380-567. DR PDB; 2QMC; X-ray; 1.55 A; A/C=25-379, B/D=380-567. DR PDB; 3FNM; X-ray; 1.70 A; A/C=25-379, B/D=380-567. DR PDBsum; 2NQO; -. DR PDBsum; 2QM6; -. DR PDBsum; 2QMC; -. DR PDBsum; 3FNM; -. DR ProteinModelPortal; O25743; -. DR SMR; O25743; 31-565. DR DIP; DIP-3652N; -. DR IntAct; O25743; 11. DR MINT; MINT-160568; -. DR STRING; 85962.HP1118; -. DR PaxDb; O25743; -. DR EnsemblBacteria; AAD08162; AAD08162; HP_1118. DR GeneID; 899655; -. DR KEGG; heo:C694_05770; -. DR KEGG; hpy:HP1118; -. DR PATRIC; 20593579; VBIHelPyl33062_1169. DR eggNOG; ENOG4105CFB; Bacteria. DR eggNOG; COG0405; LUCA. DR KO; K00681; -. DR OMA; DMMTEEH; -. DR OrthoDB; EOG62K1RV; -. DR BioCyc; HPY:HP1118-MONOMER; -. DR BRENDA; 3.4.19.13; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003840; F:gamma-glutamyltransferase activity; IEA:InterPro. DR GO; GO:0006749; P:glutathione metabolic process; IEA:InterPro. DR GO; GO:1902807; P:negative regulation of cell cycle G1/S phase transition; IDA:CACAO. DR GO; GO:0042130; P:negative regulation of T cell proliferation; IMP:CACAO. DR GO; GO:0032757; P:positive regulation of interleukin-8 production; IMP:CACAO. DR InterPro; IPR000101; GGT_peptidase. DR InterPro; IPR029055; Ntn_hydrolases_N. DR PANTHER; PTHR11686; PTHR11686; 1. DR Pfam; PF01019; G_glu_transpept; 1. DR PRINTS; PR01210; GGTRANSPTASE. DR SUPFAM; SSF56235; SSF56235; 1. DR TIGRFAMs; TIGR00066; g_glut_trans; 1. DR PROSITE; PS00462; G_GLU_TRANSPEPTIDASE; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2NQO, ECO:0000213|PDB:2QM6, KW ECO:0000213|PDB:2QMC, ECO:0000213|PDB:3FNM}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 567 AA; 61151 MW; 9A5B4E06B6B8967F CRC64; MRRSFLKTIG LGVIALFLGL LNPLSAASYP PIKNTKVGLA LSSHPLASEI GQKVLEEGGN AIDAAVAIGF ALAVVHPAAG NIGGGGFAVI HLANGENVAL DFREKAPLKA TKNMFLDKQG NVVPKLSEDG YLAAGVPGTV AGMEAMLKKY GTKKLSQLID PAIKLAENGY AISQRQAETL KEARERFLKY SSSKKYFFKK GHLDYQEGDL FVQKDLAKTL NQIKTLGAKG FYQGQVAELI EKDMKKNGGI ITKEDLASYN VKWRKPVVGS YRGYKIISMS PPSSGGTHLI QILNVMENAD LSALGYGASK NIHIAAEAMR QAYADRSVYM GDADFVSVPV DKLINKAYAK KIFDTIQPDT VTPSSQIKPG MGQLHEGSNT THYSVADRWG NAVSVTYTIN ASYGSAASID GAGFLLNNEM DDFSIKPGNP NLYGLVGGDA NAIEANKRPL SSMSPTIVLK NNKVFLVVGS PGGSRIITTV LQVISNVIDY NMNISEAVSA PRFHMQWLPD ELRIEKFGMP ADVKDNLTKM GYQIVTKPVM GDVNAIQVLP KTKGSVFYGS TDPRKEF // ID O25540_HELPY Unreviewed; 109 AA. AC O25540; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 77. DE SubName: Full=Alkylphosphonate uptake protein (PhnA) {ECO:0000313|EMBL:AAD07922.1}; GN OrderedLocusNames=HP_0872 {ECO:0000313|EMBL:AAD07922.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07922.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07922.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07922.1; -; Genomic_DNA. DR PIR; H64628; H64628. DR RefSeq; NP_207666.1; NC_000915.1. DR RefSeq; WP_001153384.1; NC_018939.1. DR ProteinModelPortal; O25540; -. DR SMR; O25540; 1-109. DR STRING; 85962.HP0872; -. DR PaxDb; O25540; -. DR EnsemblBacteria; AAD07922; AAD07922; HP_0872. DR GeneID; 899401; -. DR KEGG; heo:C694_04465; -. DR KEGG; hpy:HP0872; -. DR PATRIC; 20593033; VBIHelPyl33062_0904. DR eggNOG; ENOG4108Z8G; Bacteria. DR eggNOG; COG2824; LUCA. DR KO; K06193; -. DR OMA; SCLYEWN; -. DR OrthoDB; EOG6J752H; -. DR BioCyc; HPY:HP0872-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004624; PhnA. DR InterPro; IPR013988; PhnA_C. DR InterPro; IPR013987; PhnA_N. DR Pfam; PF03831; PhnA; 1. DR Pfam; PF08274; PhnA_Zn_Ribbon; 1. DR TIGRFAMs; TIGR00686; phnA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 31 PhnA_Zn_Ribbon. FT {ECO:0000259|Pfam:PF08274}. FT DOMAIN 43 109 PhnA. {ECO:0000259|Pfam:PF03831}. SQ SEQUENCE 109 AA; 12321 MW; 91ABC1E4F7DC6A8E CRC64; MQDLPPCPKC NDAYTYHDGT QLICPSCLYE WNENEVNDEE LIVKDCHNNL LQNGDSVILI KDLKVKNSSL VLKKGTKIKN TKLVNSDHNV DCKIEGQSLS LKSEFLKKA // ID O25368_HELPY Unreviewed; 360 AA. AC O25368; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 103. DE RecName: Full=Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; DE Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993}; DE Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; DE EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993}; DE AltName: Full=Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; GN Name=mqnE {ECO:0000256|HAMAP-Rule:MF_00993}; GN OrderedLocusNames=HP_0654 {ECO:0000313|EMBL:AAD07719.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07719.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07719.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Radical SAM enzyme that catalyzes the addition of the CC adenosyl radical to the double bond of 3-[(1- CC carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), CC a key intermediate in the formation of menaquinone (MK, vitamin CC K2) from chorismate. {ECO:0000256|HAMAP-Rule:MF_00993}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + 3-((1- CC carboxyvinyl)oxy)benzoate + H(2)O = 6-amino-6-deoxyfutalosine + L- CC methionine + HCO(3)(-). {ECO:0000256|HAMAP-Rule:MF_00993}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00993}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|HAMAP-Rule:MF_00993}; CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00993}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. MqnE family. CC {ECO:0000256|HAMAP-Rule:MF_00993}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07719.1; -; Genomic_DNA. DR PIR; F64601; F64601. DR RefSeq; NP_207448.1; NC_000915.1. DR RefSeq; WP_000346642.1; NC_018939.1. DR ProteinModelPortal; O25368; -. DR IntAct; O25368; 1. DR STRING; 85962.HP0654; -. DR PaxDb; O25368; -. DR EnsemblBacteria; AAD07719; AAD07719; HP_0654. DR GeneID; 899303; -. DR KEGG; heo:C694_03380; -. DR KEGG; hpy:HP0654; -. DR PATRIC; 20592593; VBIHelPyl33062_0685. DR eggNOG; ENOG4105DVY; Bacteria. DR eggNOG; COG1060; LUCA. DR KO; K18285; -. DR OMA; IDHMLRI; -. DR OrthoDB; EOG6SV55P; -. DR BioCyc; HPY:HP0654-MONOMER; -. DR UniPathway; UPA00079; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00993; MqnE; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR022432; Aminodeoxyfutalosine_synthase. DR InterPro; IPR020050; FO_synthase_su2. DR InterPro; IPR005244; FO_synthase_su2-like. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004762; CHP00423; 1. DR TIGRFAMs; TIGR03700; mena_SCO4494; 1. DR TIGRFAMs; TIGR00423; TIGR00423; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00993}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00993}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00993}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_00993}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00993}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00993}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00993}. FT DOMAIN 54 219 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT METAL 59 59 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00993}. FT METAL 63 63 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00993}. FT METAL 66 66 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00993}. SQ SEQUENCE 360 AA; 41396 MW; 9B16DB5143036E76 CRC64; MDFLEKVLDN QVTESKELVR LYDYDLYTLG EVADRMRQNM HQKIVYFNVN RHLNPSNICA DACKFCAFSA HRKNPNPYEM SLEEILEKVK NSYNKGIKEV HIVSAHNPNY SYEWYLKVFE TIKQEMPNLH LKAMTAAEVH FLSVKFNKPF ELVLEDMLKA GVDSMPGGGA EIFDEEIRRK ICNGKVGSSR WLEIHAYWHK LGKMSNATML FGHIENKIHR IDHMLRIKKI QSPKNQVENK EGGFNAFIPL LYQKENNYLN VEKSPSAIEI LKTIAISRIL LNNIPHIKAY WATLGLNLAL VAQEFGANDL DGTIEIESIQ SAAGAKSRHG LEKEDLIFKI KDAGFVAVER DSLYNFIQKF // ID O25565_HELPY Unreviewed; 301 AA. AC O25565; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE RecName: Full=Basal-body rod modification protein FlgD {ECO:0000256|RuleBase:RU362076}; GN OrderedLocusNames=HP_0907 {ECO:0000313|EMBL:AAD07953.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07953.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07953.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4ZZF} RP X-RAY CRYSTALLOGRAPHY (2.17 ANGSTROMS) OF 127-272. RX PubMed=26868107; DOI=10.1016/j.jsb.2016.02.003; RA Pulic I., Cendron L., Salamina M., Polverino de Laureto P., RA Matkovic-Calogovic D., Zanotti G.; RT "Crystal structure of truncated FlgD from the human pathogen RT Helicobacter pylori."; RL J. Struct. Biol. 194:147-155(2016). CC -!- FUNCTION: Required for flagellar hook formation. May act as a CC scaffolding protein. {ECO:0000256|RuleBase:RU362076}. CC -!- SIMILARITY: Belongs to the FlgD family. CC {ECO:0000256|RuleBase:RU362076}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07953.1; -; Genomic_DNA. DR PIR; C64633; C64633. DR RefSeq; NP_207699.1; NC_000915.1. DR RefSeq; WP_000963306.1; NC_018939.1. DR PDB; 4ZZF; X-ray; 2.17 A; A=127-272. DR PDBsum; 4ZZF; -. DR ProteinModelPortal; O25565; -. DR STRING; 85962.HP0907; -. DR PaxDb; O25565; -. DR EnsemblBacteria; AAD07953; AAD07953; HP_0907. DR GeneID; 899436; -. DR KEGG; heo:C694_04670; -. DR KEGG; hpy:HP0907; -. DR PATRIC; 20593115; VBIHelPyl33062_0943. DR eggNOG; ENOG4105W00; Bacteria. DR eggNOG; COG1843; LUCA. DR KO; K02389; -. DR OMA; PTAPMET; -. DR OrthoDB; EOG6BKJ7S; -. DR BioCyc; HPY:HP0907-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:UniProtKB-KW. DR InterPro; IPR005648; FlgD. DR InterPro; IPR025965; FlgD_Ig. DR Pfam; PF03963; FlgD; 1. DR Pfam; PF13860; FlgD_ig; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4ZZF}; KW Bacterial flagellum biogenesis {ECO:0000256|RuleBase:RU362076}; KW Cell projection {ECO:0000313|EMBL:AAD07953.1}; KW Cilium {ECO:0000313|EMBL:AAD07953.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07953.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 145 221 FlgD_ig. {ECO:0000259|Pfam:PF13860}. SQ SEQUENCE 301 AA; 33710 MW; F9179A9923A9473E CRC64; MAIDLAEVTG AKAAQERKKE QPTIANGLDK NAFMKLFLEQ LKNQDPTAPM ETDKIITQTA QLTQVEMQEE NKKTMQEVAS AMKSNKETNE SLKDFQGALK DTMENLNKGM DDSLKANNAL REVTALNSVS MIGKIAETDV SGANFDGNNK LSFSLFFDEK IDASKGVPAI QILNENNELV KTIPLKDYNG QKGYINFEWD GTNEKGEKVP KGNYKIKAEY NLDSHSKQYL QTRIGRGEVE SVIFDKGKPM LRMGEMVLPI DSAIEFYQPD QKPLEQKLSD QKPIDQKPLD QKPQTPPKET A // ID O25643_HELPY Unreviewed; 355 AA. AC O25643; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 80. DE SubName: Full=Integrase/recombinase (XerD) {ECO:0000313|EMBL:AAD08042.1}; GN OrderedLocusNames=HP_0995 {ECO:0000313|EMBL:AAD08042.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08042.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08042.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the 'phage' integrase family. CC {ECO:0000256|SAAS:SAAS00541913}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08042.1; -; Genomic_DNA. DR PIR; C64644; C64644. DR RefSeq; NP_207786.1; NC_000915.1. DR RefSeq; WP_001120382.1; NC_018939.1. DR ProteinModelPortal; O25643; -. DR STRING; 85962.HP0995; -. DR PaxDb; O25643; -. DR EnsemblBacteria; AAD08042; AAD08042; HP_0995. DR GeneID; 899528; -. DR KEGG; heo:C694_05135; -. DR KEGG; hpy:HP0995; -. DR PATRIC; 20593315; VBIHelPyl33062_1039. DR eggNOG; COG0582; LUCA. DR OMA; RNCDNFT; -. DR OrthoDB; EOG6PZXFP; -. DR BioCyc; HPY:HP0995-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.150.130; -; 1. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR InterPro; IPR023109; Integrase_recombinase_N. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 168 336 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. SQ SEQUENCE 355 AA; 42085 MW; E33AF1DF50B51844 CRC64; MPHNKLTKSQ RELFCNLKAF LYTKAKNFTP IQDVKDMALI LDTQDKILKC HNIEQLKQLC HILYNQGIKH TIMMQGLFLF FNYFKDNLKL RSFRMLSEEQ VINFLFELAQ NRKPSSMAKY VMYLRQFFDY LDRKRRYSFD FTLKNLAFAK TKESLPRHLN DKDLKSFLKT LLDYKPATSF EKRNKCILLI VILGGLRKCE VLNIELKHIQ VEEQNYSILI QGKGRKERKA YIKKSLLEPS LNAWLSDEYR LKYFNGAYLF KKDKQKAQNS LTLYSFIPLI FKLAQIKHYK QYGTGLHLFR HSFATLIYQE TQDLVLTSRA LGHSSLLSTK IYIHTTQEHN KKVALVFDSL IEDKK // ID O25192_HELPY Unreviewed; 507 AA. AC O25192; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07511.1}; GN OrderedLocusNames=HP_0444 {ECO:0000313|EMBL:AAD07511.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07511.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07511.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07511.1; -; Genomic_DNA. DR PIR; D64575; D64575. DR RefSeq; NP_207242.1; NC_000915.1. DR RefSeq; WP_000323332.1; NC_018939.1. DR ProteinModelPortal; O25192; -. DR IntAct; O25192; 1. DR STRING; 85962.HP0444; -. DR PaxDb; O25192; -. DR EnsemblBacteria; AAD07511; AAD07511; HP_0444. DR GeneID; 899243; -. DR KEGG; heo:C694_02255; -. DR KEGG; hpy:HP0444; -. DR PATRIC; 20592147; VBIHelPyl33062_0462. DR eggNOG; ENOG4105QR7; Bacteria. DR eggNOG; ENOG4111Z5B; LUCA. DR OMA; NTHNDED; -. DR OrthoDB; EOG6QP0X1; -. DR BioCyc; HPY:HP0444-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 507 AA; 58854 MW; AB265C853FEF2985 CRC64; MAYIANLQLL PLDEILISNG YKHKVEKSSK NNPALYNEYD TIKGTLIVSR KPDGSYHYFN THNDEDKGTI IAFCKNRGLD FNDLIKNRDD LEISDKPNHK YNNSKPYTII TKEQEAERQK VVKQFEKLRY YDIESSDLFH TLLDSRSLDK TLLKPYNHLL KEDEHANLCV PCYLINDNGN LILGGYNKRL SKPFTMQGAT NPTKHLMQAG SIKGFEVLSP RNIKNIQNII VAESVFDGLS VLEMQRFDPN QTAIISTIGN FTEERMQKFV DKFLNTINTY KCKEYNEYHK EIDRYNKQLE DYENYTNFQK RYEKWRAKEL AKHDNDPKKV PNDPIFSPIR DKNNLIPRPV FKPSLALRLK EPKIPNLSLN VILAMDNDEQ GRKFNAILEK IFYAHTKEIP NIYTPISKDA NDDLKIAKAL GLKQISNRIL QDFLFDAKEK MQNPTTTPSQ KSILANQLQK LQDLMPKPKL LQGVFHGYQQ DHGFGSKYVA NSVYYTNNQS QNKGHER // ID O26077_HELPY Unreviewed; 945 AA. AC O26077; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 107. DE RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00553569}; DE EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00553569}; GN OrderedLocusNames=HP_1553 {ECO:0000313|EMBL:AAD08593.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08593.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08593.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000256|SAAS:SAAS00553768}. CC -!- SIMILARITY: Belongs to the helicase family. UvrD subfamily. CC {ECO:0000256|SAAS:SAAS00597767}. CC -!- SIMILARITY: Contains uvrD-like helicase ATP-binding domain. CC {ECO:0000256|SAAS:SAAS00553567}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08593.1; -; Genomic_DNA. DR PIR; A64714; A64714. DR RefSeq; NP_208344.1; NC_000915.1. DR RefSeq; WP_000380097.1; NC_018939.1. DR ProteinModelPortal; O26077; -. DR DIP; DIP-3220N; -. DR IntAct; O26077; 5. DR MINT; MINT-174504; -. DR STRING; 85962.HP1553; -. DR PaxDb; O26077; -. DR EnsemblBacteria; AAD08593; AAD08593; HP_1553. DR GeneID; 899738; -. DR KEGG; heo:C694_08045; -. DR KEGG; hpy:HP1553; -. DR PATRIC; 20594529; VBIHelPyl33062_1632. DR eggNOG; ENOG4107TPV; Bacteria. DR eggNOG; COG1074; LUCA. DR OMA; VIVCERL; -. DR OrthoDB; EOG6KMB34; -. DR BioCyc; HPY:HP1553-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 5. DR InterPro; IPR014017; DNA_helicase_UvrD-like_C. DR InterPro; IPR000212; DNA_helicase_UvrD/REP. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014016; UvrD-like_ATP-bd. DR PANTHER; PTHR11070; PTHR11070; 4. DR Pfam; PF00580; UvrD-helicase; 1. DR Pfam; PF13361; UvrD_C; 2. DR SUPFAM; SSF52540; SSF52540; 4. DR PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08593.1}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Helicase {ECO:0000256|SAAS:SAAS00493105, ECO:0000313|EMBL:AAD08593.1}; KW Hydrolase {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08593.1}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08593.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 424 UvrD-like helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51198}. FT COILED 207 234 {ECO:0000256|SAM:Coils}. FT COILED 260 287 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 945 AA; 108881 MW; 6EE53868F568EB22 CRC64; MDTKRQCMAL KASAGSGKTF ALSVRFLALL FKGANPSEIL TLTFTKKATA EMKERILDYL KILQQENLEN EKEKSQNILK ELEEKYHLDP SLVQNSAPKI YQRFLNAEIR ISTIDAFFQS ILRKFCWFVG LSANFEVNED TKAHQQQLNE GFLSALNGEQ LEALSVFIAQ CLSYDSYTSD SILERLRFLK NKLYLFDPNK KEPAFDEKDF LEKLRSLNEQ IQSIETASDR AKTAIKCDDF RGFLNSSLTW LEKKSEYQSF KKLKSEIPTL ESECEEIEND LKRYYEAKET AIFKKFPKFI QLYDNATSKI QALDFDAIKD KVHVLLNGYE EMPAEFFYFR LDSKIAHILI DEFQDTSLND YKILAPFIDE IKAGIGQAKW HRSVFFVGDV KQSIYAFRGS FSSLFESVSK DFYHDNLEFN HRSAPLIINY VNTIFKKAYQ NSPTAYLEQK YPKTSQNKHV TDGYVKVSLV ADERELLLDQ VLQEAQNLLE HRIEPKDITI LCATNDDALE IKNYLQERLS AIRPSTESSA KLSQFVESKI IKNALEYALA EEPYKPFYKH SVLKLAGYLH DDAIALAGFN PKKESVAGFV WKVMEQFELY GEPAQSCLEL AVGCEDADGF LEKLETKAIA SSHSKGAQIM TIHKSKGMQF PYVIVCERLG KPNSSHSNQL LEEYDGTELL RLYYRMKNRE VVDKDYARAL DKEEAAKDHE EINVYYVAFT RAELGLIVVA KDKKESKKES KNKTMREKLD LVPLEEGEIA PVISPQKEPL ITSTLIKPHA YGEQVQEIEE EPSDYEKNND QEAINFGIAL HKGLEYQYAY NIPKQSVLEY LNYHHGFYGL DYQALEESLE LFENDAEIQA LFKNLPLKGE AAFLFQGVVS RIDVLLWDRG QNLYVLDYKS SQNYQQSHKA QVSHYAEFLK TQAPHFKIQA GIIYAHKRLL EKLWV // ID O25689_HELPY Unreviewed; 89 AA. AC O25689; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08094.1}; GN OrderedLocusNames=HP_1049 {ECO:0000313|EMBL:AAD08094.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08094.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08094.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08094.1; -; Genomic_DNA. DR PIR; A64651; A64651. DR RefSeq; NP_207840.1; NC_000915.1. DR RefSeq; WP_000971828.1; NC_000915.1. DR ProteinModelPortal; O25689; -. DR STRING; 85962.HP1049; -. DR PaxDb; O25689; -. DR PRIDE; O25689; -. DR EnsemblBacteria; AAD08094; AAD08094; HP_1049. DR GeneID; 899584; -. DR KEGG; hpy:HP1049; -. DR PATRIC; 20593435; VBIHelPyl33062_1098. DR eggNOG; ENOG41069BQ; Bacteria. DR eggNOG; ENOG410XUZT; LUCA. DR OMA; NQIVEFD; -. DR OrthoDB; EOG66QM1N; -. DR BioCyc; HPY:HP1049-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.1230.10; -; 1. DR InterPro; IPR007393; DUF448. DR Pfam; PF04296; DUF448; 1. DR SUPFAM; SSF64376; SSF64376; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 14 64 DUF448. {ECO:0000259|Pfam:PF04296}. SQ SEQUENCE 89 AA; 10382 MW; 7DA8CE3CB8A2374A CRC64; MMGFLLRKTE IKIRMCVACR MRQPQKDLLR LKSFENQIME FDGKGRSFYV CGNCLKNGEK KLLKAVSKIK NAPKDTKNII TWIKERSIA // ID O25299_HELPY Unreviewed; 232 AA. AC O25299; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE SubName: Full=Conserved hypothetical membrane protein {ECO:0000313|EMBL:AAD07642.1}; GN OrderedLocusNames=HP_0575 {ECO:0000313|EMBL:AAD07642.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07642.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07642.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07642.1; -; Genomic_DNA. DR PIR; G64591; G64591. DR RefSeq; NP_207370.1; NC_000915.1. DR RefSeq; WP_001159394.1; NC_018939.1. DR ProteinModelPortal; O25299; -. DR STRING; 85962.HP0575; -. DR PaxDb; O25299; -. DR EnsemblBacteria; AAD07642; AAD07642; HP_0575. DR GeneID; 900234; -. DR KEGG; heo:C694_02965; -. DR KEGG; hpy:HP0575; -. DR PATRIC; 20592423; VBIHelPyl33062_0600. DR eggNOG; ENOG4108Z4T; Bacteria. DR eggNOG; COG1994; LUCA. DR OMA; WFSKMER; -. DR OrthoDB; EOG6WHNQN; -. DR BioCyc; HPY:HP0575-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 99 122 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 177 194 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 200 219 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 232 AA; 26063 MW; 146AB828AF7CF436 CRC64; MQFFDFSLES FITTLMKILA LLIAIIGHEI MHGLSAFLFG DRSTKDARRL SLNPIRHLDM MGSVLLPALL LIFQAPFLFG WAKPVPVDMR YIVSQKGSLA CVVVSLAGVA YNFTLAVLLA FITHWSFQQL GINALSIDEL NLYQLALVTF LIQGILYNLV LGVFNSLPIP PLDGSKALGF LALHFKSAFL LEWFSKMERY GLLVVFIFLF IPPLSEFFIH APTRFLFSLL LS // ID O25446_HELPY Unreviewed; 400 AA. AC O25446; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 87. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07802.1}; GN OrderedLocusNames=HP_0750 {ECO:0000313|EMBL:AAD07802.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07802.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07802.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07802.1; -; Genomic_DNA. DR PIR; F64613; F64613. DR RefSeq; NP_207543.1; NC_000915.1. DR RefSeq; WP_000277334.1; NC_018939.1. DR ProteinModelPortal; O25446; -. DR DIP; DIP-3312N; -. DR IntAct; O25446; 6. DR MINT; MINT-164516; -. DR STRING; 85962.HP0750; -. DR PaxDb; O25446; -. DR EnsemblBacteria; AAD07802; AAD07802; HP_0750. DR GeneID; 899332; -. DR KEGG; heo:C694_03860; -. DR KEGG; hpy:HP0750; -. DR PATRIC; 20592789; VBIHelPyl33062_0783. DR eggNOG; ENOG4105YJB; Bacteria. DR eggNOG; COG0739; LUCA. DR OMA; MREKHIN; -. DR OrthoDB; EOG60GRS3; -. DR BioCyc; HPY:HP0750-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011055; Dup_hybrid_motif. DR InterPro; IPR016047; Peptidase_M23. DR Pfam; PF01551; Peptidase_M23; 1. DR SUPFAM; SSF51261; SSF51261; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 314 383 Peptidase_M23. FT {ECO:0000259|Pfam:PF01551}. FT COILED 27 82 {ECO:0000256|SAM:Coils}. FT COILED 209 246 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 400 AA; 45984 MW; B055E45AD3482B22 CRC64; MYKLGVFLLA TLLSANTQKV SDIAKDIQHK ETLLKKTHEE KNQLNSRLSS LGEAIRSKEL QKAEMERQMI ALKKSLEKNR NESLAQEKVL TNYRKSLDHL QKKRSFLQKR VFDTLLQDFL FSQALKGQNL ASSNDVVLQV AFENLHQSTL SKMSQLSQEE KELNTQALKV KNSIQKISSI IDEQKTREVT LKSLKTEQDK LILSMQKDYA IYNQRLTLLE KERQNLNALL KRLNIIKQNR ENEEKVSLKK SSQALEVKQV ASSYQNINTT SYNGPKTIAP LNDYEVVQKF GPYIDPVYNL KIFSESITLV SKTPNALVRN VLDGKIVFAK EINMLKKVVI IEHKNGIRTI YSQLDKIAPT IKSGMRIQKG YVLGRIDQRL GFEVTMREKH INPLELIARN // ID O25071_HELPY Unreviewed; 285 AA. AC O25071; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE SubName: Full=Dipeptide ABC transporter, permease protein (DppC) {ECO:0000313|EMBL:AAD07369.1}; GN OrderedLocusNames=HP_0300 {ECO:0000313|EMBL:AAD07369.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07369.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07369.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032, CC ECO:0000256|SAAS:SAAS00537635}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07369.1; -; Genomic_DNA. DR PIR; D64557; D64557. DR RefSeq; NP_207098.1; NC_000915.1. DR RefSeq; WP_000443358.1; NC_018939.1. DR ProteinModelPortal; O25071; -. DR STRING; 85962.HP0300; -. DR PaxDb; O25071; -. DR EnsemblBacteria; AAD07369; AAD07369; HP_0300. DR GeneID; 900102; -. DR KEGG; heo:C694_01515; -. DR KEGG; hpy:HP0300; -. DR PATRIC; 20591827; VBIHelPyl33062_0311. DR eggNOG; ENOG4105C2T; Bacteria. DR eggNOG; COG1173; LUCA. DR KO; K12370; -. DR OMA; HNPAEQF; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0300-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR025966; OppC_N. DR Pfam; PF00528; BPD_transp_1; 1. DR Pfam; PF12911; OppC_N; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00496716}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00496716, ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00496724}. FT TRANSMEM 16 38 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 85 113 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 125 143 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 149 165 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 200 226 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 246 272 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 83 272 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 285 AA; 30893 MW; 229197CB5AF00F1E CRC64; MESFREFIQQ FKKNKAAVVG AWIVLLLVIC AIFAPLLAPH DPYVQNAQDR LLKPIWEHGG NAKYLLGTDD LGRDILSRLI YGARISLTIG IVSMGIAVFF GTILGLIAGY FGGKTDAIIM RIMDIMFALP SILLIVIVVA VLGPSLTNAM LAIGFVGIPG FARLVRSSVL GEKEKEYVIA SKINGSSHLR LMCKVIFPNC IIPLIVQTTM GFASTVLEAA ALSFLGLGAQ PPKPEWGAML MNSMQYIATA PWMLVFPGVM IFLTVMSFNL VGDGIMDALD PKRTS // ID O25286_HELPY Unreviewed; 247 AA. AC O25286; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 117. DE SubName: Full=3-ketoacyl-acyl carrier protein reductase (FabG) {ECO:0000313|EMBL:AAD07627.1}; GN OrderedLocusNames=HP_0561 {ECO:0000313|EMBL:AAD07627.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07627.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07627.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4IIN} RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) IN COMPLEX WITH NAD. RG Center for Structural Genomics of Infectious Diseases (CSGID); RA Hou J., Osinski T., Zheng H., Shumilin I., Shabalin I., Shatsman S., RA Anderson W.F., Minor W.; RT "Crystal structure of a putative 3-oxoacyl-[acyl-carrier RT protein]reductase from Helicobacter pylori 26695 complexed with RT NAD+."; RL Submitted (DEC-2012) to the PDB data bank. RN [3] {ECO:0000213|PDB:4IJK} RP X-RAY CRYSTALLOGRAPHY (2.54 ANGSTROMS). RG Center for Structural Genomics of Infectious Diseases (CSGID); RA Hou J., Osinski T., Zheng H., Shumilin I., Shabalin I.G., Shatsman S., RA Anderson W.F., Minor W.; RT "Crystal structure of a putative 3-oxoacyl-[acyl-carrier RT protein]reductase from Helicobacter pylori 26695."; RL Submitted (DEC-2012) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07627.1; -; Genomic_DNA. DR PIR; A64590; A64590. DR RefSeq; NP_207356.1; NC_000915.1. DR RefSeq; WP_001160833.1; NC_018939.1. DR PDB; 4IIN; X-ray; 2.40 A; A/B/C/D=1-247. DR PDB; 4IJK; X-ray; 2.54 A; A/B/C/D=1-247. DR PDBsum; 4IIN; -. DR PDBsum; 4IJK; -. DR ProteinModelPortal; O25286; -. DR IntAct; O25286; 1. DR STRING; 85962.HP0561; -. DR PaxDb; O25286; -. DR EnsemblBacteria; AAD07627; AAD07627; HP_0561. DR GeneID; 900034; -. DR KEGG; heo:C694_02895; -. DR KEGG; hpy:HP0561; -. DR PATRIC; 20592395; VBIHelPyl33062_0586. DR eggNOG; ENOG4105CHR; Bacteria. DR eggNOG; ENOG410XNW1; LUCA. DR KO; K00059; -. DR OMA; VVCDKLA; -. DR OrthoDB; EOG6N3CR8; -. DR BioCyc; HPY:HP0561-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004316; F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR011284; 3oxo_ACP_reduc. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 3. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01830; 3oxo_ACP_reduc; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4IIN, ECO:0000213|PDB:4IJK}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW NAD {ECO:0000213|PDB:4IIN}; Nucleotide-binding {ECO:0000213|PDB:4IIN}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT NP_BIND 63 64 NAD. {ECO:0000213|PDB:4IIN}. FT NP_BIND 185 190 NAD. {ECO:0000213|PDB:4IIN}. FT BINDING 17 17 NAD; via amide nitrogen. FT {ECO:0000213|PDB:4IIN}. FT BINDING 37 37 NAD. {ECO:0000213|PDB:4IIN}. FT BINDING 90 90 NAD; via carbonyl oxygen. FT {ECO:0000213|PDB:4IIN}. FT BINDING 113 113 NAD. {ECO:0000213|PDB:4IIN}. FT BINDING 155 155 NAD. {ECO:0000213|PDB:4IIN}. FT BINDING 159 159 NAD. {ECO:0000213|PDB:4IIN}. SQ SEQUENCE 247 AA; 26668 MW; 3F76B625834EA1CB CRC64; MQFTGKNVLI TGASKGIGAE IAKTLASMGL KVWINYRSNA EVADALKNEL EEKGYKAAVI KFDAASESDF IEAIQTIVQS DGGLSYLVNN AGVVRDKLAI KMKTEDFHHV IDNNLTSAFI GCREALKVMS KSRFGSVVNV ASIIGERGNM GQTNYSASKG GMIAMSKSFA YEGALRNIRF NSVTPGFIET DMNANLKDEL KADYVKNIPL NRLGSAKEVA EAVAFLLSDH SSYITGETLK VNGGLYM // ID O25216_HELPY Unreviewed; 578 AA. AC O25216; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE SubName: Full=Oligoendopeptidase F (PepF) {ECO:0000313|EMBL:AAD07532.1}; GN OrderedLocusNames=HP_0470 {ECO:0000313|EMBL:AAD07532.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07532.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07532.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07532.1; -; Genomic_DNA. DR PIR; F64578; F64578. DR RefSeq; NP_207268.1; NC_000915.1. DR RefSeq; WP_000662799.1; NC_018939.1. DR ProteinModelPortal; O25216; -. DR DIP; DIP-3350N; -. DR IntAct; O25216; 2. DR MINT; MINT-169317; -. DR STRING; 85962.HP0470; -. DR PaxDb; O25216; -. DR EnsemblBacteria; AAD07532; AAD07532; HP_0470. DR GeneID; 900151; -. DR KEGG; heo:C694_02410; -. DR KEGG; hpy:HP0470; -. DR PATRIC; 20592211; VBIHelPyl33062_0494. DR eggNOG; ENOG4105DPN; Bacteria. DR eggNOG; COG1164; LUCA. DR KO; K08602; -. DR OMA; FTLAHEA; -. DR OrthoDB; EOG6CCH1Q; -. DR BioCyc; HPY:HP0470-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR InterPro; IPR013647; OligopepF_N_dom. DR InterPro; IPR001567; Pept_M3A_M3B. DR InterPro; IPR011977; Pept_M3B_clade3. DR Pfam; PF01432; Peptidase_M3; 1. DR Pfam; PF08439; Peptidase_M3_N; 1. DR TIGRFAMs; TIGR02290; M3_fam_3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 103 168 Peptidase_M3_N. FT {ECO:0000259|Pfam:PF08439}. FT COILED 8 42 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 578 AA; 67705 MW; EFAC5237B28B6E32 CRC64; MKEQEWDLSA LFENKESAEE FLKTLQTEAQ EFESAYQNNL KNLDATGFAN ALKHYENLSE KISRVMAYAQ LLFAKNTKEA KFYSQCEMAC ANIQQHLLFF EIEFKNLDAK KQLAFIKKCK DHAFYLNNLI ERKKHTLNLD EEKIALALSP VGVGAFSRLF DEHFSSLKIP FEEQNLSEEE ILALLHNPKR KIRKKSQKAF SKALEKSRPL LTYILNMVRK DLLIETRLRK YDKKESFRHI DNQISQESVD SMIEIVNANF SLVHRYYHQK AQILGHKLKD YDRYAPLNDE SITMTYSQAL EEVLKTLKAF SPEFHKIASK AIKEGWVDSH PKDFKQGGAF SHGGVPSAHP YVLLNYTGNR RDAFTIAHEF GHMIHQELSK KQGVLNMDTP LTTAETASVF SEMLFFEHLK KGLKSDELLF MLAGKLEDIF STLFRQVVMT NFERRIHEMD EELDTKDFDR IWFEENQRMF EKSVKLTKNY HLWWSYIPHF IHSPFYCYAY SYGQLLTLAL YGLYKKSDAK EFVKTYTEFL SLGGSKSPKE LVSMFGFDID SKEFWEIGMQ EVRHLLEEFE RLLACKEN // ID O25260_HELPY Unreviewed; 748 AA. AC O25260; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 87. DE SubName: Full=Cag pathogenicity island protein (Cag5) {ECO:0000313|EMBL:AAD07591.1}; GN OrderedLocusNames=HP_0524 {ECO:0000313|EMBL:AAD07591.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07591.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07591.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07591.1; -; Genomic_DNA. DR PIR; D64585; D64585. DR RefSeq; NP_207320.1; NC_000915.1. DR RefSeq; WP_000389328.1; NC_018939.1. DR ProteinModelPortal; O25260; -. DR IntAct; O25260; 1. DR STRING; 85962.HP0524; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25260; -. DR EnsemblBacteria; AAD07591; AAD07591; HP_0524. DR GeneID; 899267; -. DR KEGG; heo:C694_02700; -. DR KEGG; hpy:HP0524; -. DR PATRIC; 20592323; VBIHelPyl33062_0550. DR eggNOG; ENOG4105E80; Bacteria. DR eggNOG; COG3505; LUCA. DR KO; K12090; -. DR OMA; FIYEPFS; -. DR OrthoDB; EOG6P8TJC; -. DR BioCyc; HPY:HP0524-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0009291; P:unidirectional conjugation; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003688; TraG/VirD4. DR Pfam; PF02534; T4SS-DNA_transf; 1. DR SUPFAM; SSF52540; SSF52540; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 36 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 73 96 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 138 165 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 748 AA; 85778 MW; 2A64824F07169BC3 CRC64; MEDFLYNTLY FIEDYKLVVI FSFIGLIALF FLYKFIKAQK KAFKDKANQP QKKKSFKEII IDGLKERVKT FGFWLQAILL LSYSFITSGL FFLILLGNFY DDNRSPESDD DLFDIWIYAI QDFPNYYFKA LGFSSLKIYG FNISLVVYGS ILCSYIFITF FVWFLKYLTR TRDIGANKKV DDLFGSASWE TEEKMIKAKL ITPNNKKRAF DKREVIVGRR GLGDFIAYAG QAFIGLIAPT RSGKGVGFIM PNMINYPQNI VVFDPKADTM ETCGKIREKR FNQKVFIYEP FSLKTHRFNP FAYVDFGNDV VLTEDILSQI DTRLKGHGMV ASGGDFSTQI FGLAKLVFPE RPNEKDPFFS NQARNLFVIN CNIYRDLMWT KKGLEFVKRK KIIMPETPTM FFIGSMASGI NLIDEDTNME KVVSLMEFFG GEEDKSGDNL RVLSPATRNM WNSFKTMGGA RETYSSVQGV YTSAFAPYNN AMIRNFTSAN DFDFRRLRID EVSIGVIANP KESTIVGPIL ELFFNVMIYS NLILPIHDPQ CKRSCLMLMD EFTLCGYLET FVKAVGIMAE YNMRPAFVFQ SKAQLENDPP LGYGRNGAKT ILDNLSLNMY YGINNDNYYE HFEKLSKVLG KYTRQDVSRS IDDNTGKTNT SISNKERFLM TPDELMTMGD ELIILENTLK PIKCHKALYY DDPFFTDELI KVSPSLSKKY KLGKVPNQAT FYDDLQAAKT RGELSYDKSL VPVGSSEL // ID O25388_HELPY Unreviewed; 255 AA. AC O25388; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 82. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD14882.1}; GN OrderedLocusNames=HP_0677 {ECO:0000313|EMBL:AAD14882.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14882.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14882.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363041}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363041}. CC -!- SIMILARITY: Belongs to the UPF0721 family. CC {ECO:0000256|RuleBase:RU363041}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14882.1; -; Genomic_DNA. DR PIR; E64604; E64604. DR RefSeq; NP_207471.1; NC_000915.1. DR RefSeq; WP_000355989.1; NC_018939.1. DR ProteinModelPortal; O25388; -. DR STRING; 85962.HP0677; -. DR PaxDb; O25388; -. DR EnsemblBacteria; AAD14882; AAD14882; HP_0677. DR GeneID; 899309; -. DR KEGG; heo:C694_03495; -. DR KEGG; hpy:HP0677; -. DR PATRIC; 20592639; VBIHelPyl33062_0708. DR eggNOG; COG0730; LUCA. DR KO; K07090; -. DR OMA; DIYALYI; -. DR OrthoDB; EOG6TXQW7; -. DR BioCyc; HPY:HP0677-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR InterPro; IPR002781; TM_pro_TauE-like. DR PANTHER; PTHR30269; PTHR30269; 1. DR Pfam; PF01925; TauE; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU363041}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363041}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363041}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 7 32 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 44 63 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 70 91 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 97 116 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 137 163 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 175 196 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 203 225 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 237 254 Helical. {ECO:0000256|RuleBase:RU363041}. SQ SEQUENCE 255 AA; 27433 MW; 669C9968230ABE7E CRC64; MDIYALYIAI GLFTGILSGI FGIGGGLIIV PIMLATGHSF EESIGISILQ MALSSFVGSV LNFKKKSLDF SLGLLIGAGG LIGASFSGFV LKIVSSKILM VIFALLVVYS MIQFVLKPKK KDLIADTKRY HLQGLKLFLI GTLTGFFAIT LGIGGGMLMV PLMHYFLGYD SKKCVALGLF FILFSSISGA FSLMYHHIIN KEVLLAGAIV GLGSVMGVSI GIKWIMGLLN EKMHKALILG VYGLSLLIVL YKLFF // ID O25865_HELPY Unreviewed; 459 AA. AC O25865; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 104. DE SubName: Full=Phosphomannomutase (AlgC)(Pseudomonas aeruginosa) {ECO:0000313|EMBL:AAD08319.1}; GN OrderedLocusNames=HP_1275 {ECO:0000313|EMBL:AAD08319.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08319.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08319.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the phosphohexose mutase family. CC {ECO:0000256|RuleBase:RU004326, ECO:0000256|SAAS:SAAS00551227}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08319.1; -; Genomic_DNA. DR PIR; C64679; C64679. DR RefSeq; NP_208067.1; NC_000915.1. DR RefSeq; WP_000355104.1; NC_018939.1. DR ProteinModelPortal; O25865; -. DR STRING; 85962.HP1275; -. DR PaxDb; O25865; -. DR EnsemblBacteria; AAD08319; AAD08319; HP_1275. DR GeneID; 898879; -. DR KEGG; heo:C694_06590; -. DR KEGG; hpy:HP1275; -. DR PATRIC; 20593927; VBIHelPyl33062_1334. DR eggNOG; ENOG4107QKV; Bacteria. DR eggNOG; COG1109; LUCA. DR KO; K15778; -. DR OMA; KADYWKT; -. DR OrthoDB; EOG6W9X55; -. DR BioCyc; HPY:HP1275-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016868; F:intramolecular transferase activity, phosphotransferases; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.30.310.50; -; 1. DR Gene3D; 3.40.120.10; -; 3. DR InterPro; IPR005844; A-D-PHexomutase_a/b/a-I. DR InterPro; IPR016055; A-D-PHexomutase_a/b/a-I/II/III. DR InterPro; IPR005845; A-D-PHexomutase_a/b/a-II. DR InterPro; IPR005846; A-D-PHexomutase_a/b/a-III. DR InterPro; IPR005843; A-D-PHexomutase_C. DR InterPro; IPR016066; A-D-PHexomutase_CS. DR InterPro; IPR005841; Alpha-D-phosphohexomutase_SF. DR Pfam; PF02878; PGM_PMM_I; 1. DR Pfam; PF02879; PGM_PMM_II; 1. DR Pfam; PF02880; PGM_PMM_III; 1. DR Pfam; PF00408; PGM_PMM_IV; 1. DR PRINTS; PR00509; PGMPMM. DR SUPFAM; SSF53738; SSF53738; 3. DR SUPFAM; SSF55957; SSF55957; 1. DR PROSITE; PS00710; PGM_PMM; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Magnesium {ECO:0000256|RuleBase:RU004326, KW ECO:0000256|SAAS:SAAS00436074}; KW Metal-binding {ECO:0000256|RuleBase:RU004326, KW ECO:0000256|SAAS:SAAS00436123}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 130 PGM_PMM_I. {ECO:0000259|Pfam:PF02878}. FT DOMAIN 155 250 PGM_PMM_II. {ECO:0000259|Pfam:PF02879}. FT DOMAIN 258 366 PGM_PMM_III. {ECO:0000259|Pfam:PF02880}. FT DOMAIN 378 456 PGM_PMM_IV. {ECO:0000259|Pfam:PF00408}. SQ SEQUENCE 459 AA; 51770 MW; 65C6AB2D747075FE CRC64; MDISIFREYD IRGIYPTTLD EKGAFSIGVE LGKIMRECDK SVFVGHDARV HGRFLFEALS AGLQSSGLKV YDLGLIPTPV AYFAAFNEIN GIQCPNSIMI TGSHNPKEYN GFKITLNQNP FYGKDIQALK DTLLNAKHEI KPLKEIPEKA NALEAYQRYL IKDFKHLKNL KYKIALDFGN GVGALGLEPI LKALNIDFNS LYSDPDGNFP NHHPDPSEAK NLKDLEKHMQ ENAISIGFAF DGDADRIAML SSHHVYAGDE LAILFAKRLH AQGITPFVIG EVKCSQVMYN TINTFGKTLM YKTGHSNLKI KLKETHAHFA AEMSGHIFFK ERYFGYDDAL YACLRALELL LEQTPSDLEN TIKNLPYSYT TPEEKIAVSE EEKFEIIHNL QETLKNPPSH FPKIKEIISI DGVRVVFEHG FGLIRASNTT PYLVSRFEGK DETTALEYKR ALLNLLEKL // ID O25708_HELPY Unreviewed; 438 AA. AC O25708; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 65. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08118.1}; GN OrderedLocusNames=HP_1075 {ECO:0000313|EMBL:AAD08118.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08118.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08118.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4Q6M, ECO:0000213|PDB:4Q6N, ECO:0000213|PDB:4Q6O} RP X-RAY CRYSTALLOGRAPHY (1.41 ANGSTROMS) OF 22-438 IN COMPLEX WITH RP CALCIUM AND ZINC. RX PubMed=25372672; DOI=10.1107/S1399004714018732; RA Kim H.S., Kim J., Im H.N., An D.R., Lee M., Hesek D., Mobashery S., RA Kim J.Y., Cho K., Yoon H.J., Han B.W., Lee B.I., Suh S.W.; RT "Structural basis for the recognition of muramyltripeptide by RT Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the RT helical cell shape."; RL Acta Crystallogr. D 70:2800-2812(2014). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08118.1; -; Genomic_DNA. DR PIR; C64654; C64654. DR RefSeq; NP_207866.1; NC_000915.1. DR RefSeq; WP_000725381.1; NC_000915.1. DR PDB; 4Q6M; X-ray; 1.60 A; A=22-438. DR PDB; 4Q6N; X-ray; 1.55 A; A=22-438. DR PDB; 4Q6O; X-ray; 1.41 A; A=22-438. DR PDB; 4Q6P; X-ray; 2.62 A; A=22-438. DR PDB; 4Q6Q; X-ray; 2.40 A; A=22-438. DR PDBsum; 4Q6M; -. DR PDBsum; 4Q6N; -. DR PDBsum; 4Q6O; -. DR PDBsum; 4Q6P; -. DR PDBsum; 4Q6Q; -. DR ProteinModelPortal; O25708; -. DR DIP; DIP-3761N; -. DR IntAct; O25708; 1. DR MINT; MINT-175679; -. DR STRING; 85962.HP1075; -. DR MEROPS; M99.001; -. DR PaxDb; O25708; -. DR PRIDE; O25708; -. DR EnsemblBacteria; AAD08118; AAD08118; HP_1075. DR GeneID; 899611; -. DR KEGG; hpy:HP1075; -. DR PATRIC; 20593489; VBIHelPyl33062_1124. DR eggNOG; ENOG4105DV6; Bacteria. DR eggNOG; ENOG410XPGA; LUCA. DR OMA; TFYAINQ; -. DR OrthoDB; EOG61GG7F; -. DR BioCyc; HPY:HP1075-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR033398; M99_beta-barrel. DR InterPro; IPR033397; Metallo_peptidase_C. DR InterPro; IPR031489; Peptidase_M99. DR Pfam; PF17033; Peptidase_M99; 1. DR Pfam; PF17129; Peptidase_M99_C; 1. DR Pfam; PF17130; Peptidase_M99_m; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4Q6M, ECO:0000213|PDB:4Q6N, KW ECO:0000213|PDB:4Q6O, ECO:0000213|PDB:4Q6P}; KW Calcium {ECO:0000213|PDB:4Q6M, ECO:0000213|PDB:4Q6N, KW ECO:0000213|PDB:4Q6O, ECO:0000213|PDB:4Q6P}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000213|PDB:4Q6M, ECO:0000213|PDB:4Q6N, KW ECO:0000213|PDB:4Q6O, ECO:0000213|PDB:4Q6P}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Zinc {ECO:0000213|PDB:4Q6P, ECO:0000213|PDB:4Q6Q}. FT DOMAIN 1 267 Peptidase_M99. FT {ECO:0000259|Pfam:PF17033}. FT METAL 46 46 Calcium 1. {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 46 46 Zinc 1. {ECO:0000213|PDB:4Q6P}. FT METAL 49 49 Calcium 1. {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 49 49 Zinc 1. {ECO:0000213|PDB:4Q6P}. FT METAL 62 62 Calcium 2; via pros nitrogen. FT {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 62 62 Zinc 2; via pros nitrogen. FT {ECO:0000213|PDB:4Q6P}. FT METAL 128 128 Calcium 1; via pros nitrogen. FT {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 128 128 Zinc 1; via pros nitrogen. FT {ECO:0000213|PDB:4Q6P}. FT METAL 173 173 Calcium 3. {ECO:0000213|PDB:4Q6Q}. FT METAL 176 176 Calcium 3. {ECO:0000213|PDB:4Q6Q}. FT METAL 254 254 Calcium 2. {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 254 254 Zinc 2. {ECO:0000213|PDB:4Q6P}. FT METAL 320 320 Zinc 3. {ECO:0000213|PDB:4Q6P}. FT METAL 321 321 Zinc 3. {ECO:0000213|PDB:4Q6P}. FT METAL 382 382 Calcium 4. {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 382 382 Zinc 4. {ECO:0000213|PDB:4Q6Q}. FT METAL 383 383 Calcium 4; via carbonyl oxygen. FT {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 383 383 Zinc 4; via carbonyl oxygen. FT {ECO:0000213|PDB:4Q6Q}. FT METAL 386 386 Calcium 4; via carbonyl oxygen. FT {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 386 386 Zinc 4; via carbonyl oxygen. FT {ECO:0000213|PDB:4Q6Q}. FT METAL 396 396 Calcium 4. {ECO:0000213|PDB:4Q6M, FT ECO:0000213|PDB:4Q6N, FT ECO:0000213|PDB:4Q6O}. FT METAL 396 396 Zinc 4. {ECO:0000213|PDB:4Q6Q}. SQ SEQUENCE 438 AA; 50233 MW; 2F15B63DF80D1A54 CRC64; MKKIWLLVWG LCSWVFLHAI EMIEKAPTNV EDRDKAPHLL LLAGIQGDEP GGFNATNLFL MHYSVLKGLV EVVPVLNKPS MLRNHRGLYG DMNRKFAALD KNDPEYPTIQ EIKSLIAKPS IDAVLHLHDG GGYYRPVYVD AMLNPKRWGN CFIIDQDEVK GAKFPNLLAF ANNTIESINA HLLHPIEEYH LKNTRTAQGD TEMQKALTFY AINQKKSAFA NEASKELPLA SRVFYHLQAI EGLLNQLNIP FKRDFDLNPN SVHALINDKN LWAKISSLPK MPLFNLRPKL NHFPLPHNTK IPQIPIESNA YIVGLVKNKQ EVFLKYGNKL MTRLSPFYIE FDPSLEEVKM QIDNKDQMVK IGSVVEVKES FYIHAMDNIR ANVIGFSVSN ENKPNEAGYT IKFKDFQKRF SLDKQERIYR IEFYKNNAFS GMILVKFV // ID O25009_HELPY Unreviewed; 326 AA. AC O25009; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 95. DE RecName: Full=Nitrogen fixation protein NifU {ECO:0000256|PIRNR:PIRNR000375}; GN OrderedLocusNames=HP_0221 {ECO:0000313|EMBL:AAD07289.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07289.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07289.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: May be involved in the formation or repair of [Fe-S] CC clusters present in iron-sulfur proteins. CC {ECO:0000256|PIRNR:PIRNR000375}. CC -!- SIMILARITY: Belongs to the NifU family. CC {ECO:0000256|PIRNR:PIRNR000375}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07289.1; -; Genomic_DNA. DR PIR; E64547; E64547. DR RefSeq; NP_207019.1; NC_000915.1. DR RefSeq; WP_001051995.1; NC_018939.1. DR ProteinModelPortal; O25009; -. DR DIP; DIP-3164N; -. DR IntAct; O25009; 1. DR MINT; MINT-169498; -. DR STRING; 85962.HP0221; -. DR PaxDb; O25009; -. DR EnsemblBacteria; AAD07289; AAD07289; HP_0221. DR GeneID; 898958; -. DR KEGG; heo:C694_01115; -. DR KEGG; hpy:HP0221; -. DR PATRIC; 20591665; VBIHelPyl33062_0232. DR eggNOG; ENOG4107XTC; Bacteria. DR eggNOG; COG0694; LUCA. DR eggNOG; COG0822; LUCA. DR KO; K13819; -. DR OMA; KAGGGCS; -. DR OrthoDB; EOG6GFGQT; -. DR BioCyc; HPY:HP0221-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR GO; GO:0009399; P:nitrogen fixation; IEA:UniProtKB-KW. DR InterPro; IPR007419; BFD-like_2Fe2S-bd_dom. DR InterPro; IPR016217; N_fixation_NifU. DR InterPro; IPR001075; NIF_FeS_clus_asmbl_NifU_C. DR InterPro; IPR002871; NIF_FeS_clus_asmbl_NifU_N. DR Pfam; PF04324; Fer2_BFD; 1. DR Pfam; PF01106; NifU; 1. DR Pfam; PF01592; NifU_N; 1. DR PIRSF; PIRSF000375; NifU; 1. DR ProDom; PD002830; NIF_FeS_clus_asmbl_NifU_C; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nitrogen fixation {ECO:0000256|PIRNR:PIRNR000375}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 14 152 NifU_N. {ECO:0000259|Pfam:PF01592}. FT DOMAIN 159 200 Fer2_BFD. {ECO:0000259|Pfam:PF04324}. FT DOMAIN 254 323 NifU. {ECO:0000259|Pfam:PF01106}. SQ SEQUENCE 326 AA; 36350 MW; 1E9AD159BA8068AA CRC64; MAKHDLVGSV LWDAYSKEVQ RRMDNPTHLG VITEEQAKAK NAKLIVADYG AEACGDAVRL YWLVDESTDR IVDAKFKSFG CGTAIASSDM MVELCLNKRV QDAVKITNLD VERGLRDDPD TPAVPGQKMH CSVMAYDVIK KAAGMYLGKN AEDFEEEIIV CECARVSLGT IKEVIKLNDL KSVEEITNYT KAGAFCKSCV RPGGHEKRDY YLVDILKEVR EEMEAEKLKA TANKSQSGEL AFREMTMVQK IKAVDKVIDE NIRPMLMMDG GDLEILDIKE SDDYIDVYIR YMGACDGCMS ATTGTLFAIE NALQELLDRS IRVLPI // ID O25327_HELPY Unreviewed; 234 AA. AC O25327; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 78. DE SubName: Full=Membrane fusion protein (MtrC) {ECO:0000313|EMBL:AAD07670.1}; GN OrderedLocusNames=HP_0606 {ECO:0000313|EMBL:AAD07670.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07670.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07670.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the membrane fusion protein (MFP) CC (TC 8.A.1) family. {ECO:0000256|SAAS:SAAS00568556}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07670.1; -; Genomic_DNA. DR PIR; F64595; F64595. DR RefSeq; NP_207401.1; NC_000915.1. DR RefSeq; WP_000619658.1; NC_018939.1. DR ProteinModelPortal; O25327; -. DR DIP; DIP-3758N; -. DR IntAct; O25327; 2. DR MINT; MINT-176203; -. DR STRING; 85962.HP0606; -. DR PaxDb; O25327; -. DR EnsemblBacteria; AAD07670; AAD07670; HP_0606. DR GeneID; 899289; -. DR KEGG; heo:C694_03135; -. DR KEGG; hpy:HP0606; -. DR PATRIC; 20592491; VBIHelPyl33062_0634. DR eggNOG; ENOG4105RIA; Bacteria. DR eggNOG; COG0845; LUCA. DR OMA; NIQVGEG; -. DR OrthoDB; EOG67HJST; -. DR BioCyc; HPY:HP0606-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR032317; HlyD_D23. DR InterPro; IPR006143; RND_pump_MFP. DR Pfam; PF16576; HlyD_D23; 1. DR TIGRFAMs; TIGR01730; RND_mfp; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 234 AA; 25957 MW; 75895AA24D141C48 CRC64; MIRKILIGLF LSFLSMEAGE KVYAIFNVKA TQDSKLTLDS TGIVDSIKVT EGSVVKKGDV LLLLYNQDKQ AQSDSTEQQL IFAKKQYQRY SKIGGAVDKN TLEGYEFTYR RLESDYAYSI AVLNKTILRA PFDGVIASKN IQVGEGVSAN NTVLLRLVSH ARKLVIEFDS KYINAVKVGD TYTYSIDGDS NQHEAKITKI YPTVDENTRK VSAEALLSKP MAVGLFGDGF IQTK // ID O25720_HELPY Unreviewed; 641 AA. AC O25720; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 105. DE SubName: Full=Transketolase A (TktA) {ECO:0000313|EMBL:AAD08131.1}; GN OrderedLocusNames=HP_1088 {ECO:0000313|EMBL:AAD08131.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08131.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08131.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the transketolase family. CC {ECO:0000256|SAAS:SAAS00570687}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08131.1; -; Genomic_DNA. DR PIR; H64655; H64655. DR RefSeq; NP_207879.1; NC_000915.1. DR RefSeq; WP_001239827.1; NC_018939.1. DR ProteinModelPortal; O25720; -. DR DIP; DIP-3387N; -. DR IntAct; O25720; 2. DR MINT; MINT-183980; -. DR STRING; 85962.HP1088; -. DR PaxDb; O25720; -. DR EnsemblBacteria; AAD08131; AAD08131; HP_1088. DR GeneID; 899624; -. DR KEGG; heo:C694_05620; -. DR KEGG; hpy:HP1088; -. DR PATRIC; 20593515; VBIHelPyl33062_1137. DR eggNOG; ENOG4105CV1; Bacteria. DR eggNOG; COG0021; LUCA. DR KO; K00615; -. DR OMA; AIHYPTF; -. DR OrthoDB; EOG6N3CRG; -. DR BioCyc; HPY:HP1088-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004802; F:transketolase activity; IEA:InterPro. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 2. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR InterPro; IPR005475; Transketolase-like_Pyr-bd. DR InterPro; IPR005478; Transketolase_bac-like. DR InterPro; IPR033248; Transketolase_C. DR InterPro; IPR033247; Transketolase_fam. DR InterPro; IPR005474; Transketolase_N. DR PANTHER; PTHR11624; PTHR11624; 2. DR Pfam; PF02779; Transket_pyr; 1. DR Pfam; PF02780; Transketolase_C; 1. DR Pfam; PF00456; Transketolase_N; 1. DR SMART; SM00861; Transket_pyr; 1. DR SUPFAM; SSF52518; SSF52518; 2. DR SUPFAM; SSF52922; SSF52922; 1. DR TIGRFAMs; TIGR00232; tktlase_bact; 1. DR PROSITE; PS00801; TRANSKETOLASE_1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Magnesium {ECO:0000256|SAAS:SAAS00460037}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|SAAS:SAAS00460052}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Thiamine pyrophosphate {ECO:0000256|SAAS:SAAS00459980}; KW Transferase {ECO:0000256|SAAS:SAAS00460013}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 407 428 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 19 39 TRANSKETOLASE_1. FT {ECO:0000259|PROSITE:PS00801}. SQ SEQUENCE 641 AA; 70585 MW; B8E64B5326995696 CRC64; MRLSNADLER LKSMANALRF LCADMIDKAN SGHPGVCLGL ADVMVVLSLH LNLNPTNPKW LNRDRLVFSG GHASALAYSL LHLWGFDLSL EDLKRFRQLH SKTPGHPELH HTEGIEITTG PLGQGFANAV GFSMASQYAQ NLLDKEAISH KVYCLCGDGD LQEGISYESA SLAGHLRLDN LIVIYDSNQI SIEGAINISF SEQVKTRFVA QNWEVLECDG HDYQAIHNAL EEAKKSTKPT LLIAHTIIGK GAVGLEGSEK THGSPLNKEV LKQSKENAQI NPNESFIISP KNKMHFEEVK VRGVSLEALW EKSLSPKIKE KIHALKDFDF SAIHYPTFKK GESLATRVSN GMILNAIAKE CEGFLGGSAD LAPSNNTQLK HSGDFPLGQN LHFGIREHAM GAITNALAAY GLFVPFCATF FVFSDYLMPS IRLSALMKLK ALFIFTHDSI GVGEDGATHQ PIEQLNHLRA LPNFYAFRPS DAFENTACMQ IALSLNAPSG LILSRQNLPV LDEVSKERVL KGAYVKHHSK DPIITLVASG SEVSLALESA KILERENIQT QVISAPCFDL LIEQDESYLK ELFKGKVLVI EASRAIEWYR FADKIIGMDS FGSSAKGDKL FEKFGFSVEN ITAQAKRLLN A // ID O25885_HELPY Unreviewed; 412 AA. AC O25885; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08377.1}; GN OrderedLocusNames=HP_1327 {ECO:0000313|EMBL:AAD08377.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08377.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08377.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08377.1; -; Genomic_DNA. DR PIR; G64685; G64685. DR RefSeq; NP_208119.1; NC_000915.1. DR RefSeq; WP_000948089.1; NC_018939.1. DR ProteinModelPortal; O25885; -. DR DIP; DIP-3616N; -. DR IntAct; O25885; 2. DR MINT; MINT-170433; -. DR STRING; 85962.HP1327; -. DR PaxDb; O25885; -. DR EnsemblBacteria; AAD08377; AAD08377; HP_1327. DR GeneID; 900181; -. DR KEGG; heo:C694_06850; -. DR KEGG; hpy:HP1327; -. DR PATRIC; 20594035; VBIHelPyl33062_1388. DR OMA; LGYNNAN; -. DR OrthoDB; EOG6DC6G2; -. DR BioCyc; HPY:HP1327-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR InterPro; IPR003423; OMP_efflux. DR Pfam; PF02321; OEP; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 147 174 {ECO:0000256|SAM:Coils}. FT COILED 182 205 {ECO:0000256|SAM:Coils}. FT COILED 333 360 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 412 AA; 47115 MW; 1724D84A9BFA15DD CRC64; MLSFISAFDK RGVSIRLLTA LLLLFSLGLA KDLEIQSFVA KYLSKNQKIQ ALQEQIDALS SQEKVVSKWD NPILYLGYNN ANVSDFFRLD STLMQNMSLG LSQKVDLNGK KLTQSQMIDL EKQKKILELK KTKQQLAISL MINGIENYKN QQEIELLKTA IKNLENTLYQ ANHSSSPNLI AIAKLEILKS QLEIKKNNLE EALSASHYSM GELAFKENEL LSIAPKNFEF NREQELHNIS ATNYDIAIAR LDEEKSQKDI TLAKKSFLED VNVTGVYYFR SKQYYNYDMF SIALSIPLPI YGKQAKLVEQ KKKESLVFKS EVENTKNKTH HLALKLLKKL ETLQKNLESI NKIIKQNEKI AQIYALDLKS NGDYNAYYNA FNDKITIQIT QLETLSALNS TYLSLQNLKG LE // ID O25127_HELPY Unreviewed; 344 AA. AC O25127; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 95. DE SubName: Full=UDP-glucose 4-epimerase {ECO:0000313|EMBL:AAD07428.1}; GN OrderedLocusNames=HP_0360 {ECO:0000313|EMBL:AAD07428.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07428.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07428.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the NAD(P)-dependent epimerase/dehydratase CC family. {ECO:0000256|RuleBase:RU004966}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07428.1; -; Genomic_DNA. DR PIR; H64564; H64564. DR RefSeq; NP_207158.1; NC_000915.1. DR RefSeq; WP_001186109.1; NC_000915.1. DR ProteinModelPortal; O25127; -. DR STRING; 85962.HP0360; -. DR PaxDb; O25127; -. DR PRIDE; O25127; -. DR EnsemblBacteria; AAD07428; AAD07428; HP_0360. DR GeneID; 899217; -. DR KEGG; hpy:HP0360; -. DR PATRIC; 20591955; VBIHelPyl33062_0372. DR eggNOG; ENOG4105CMR; Bacteria. DR eggNOG; COG1087; LUCA. DR KO; K01784; -. DR OMA; AVFHFAS; -. DR OrthoDB; EOG6WHNS9; -. DR BioCyc; HPY:HP0360-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003978; F:UDP-glucose 4-epimerase activity; IEA:InterPro. DR GO; GO:0006012; P:galactose metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR001509; Epimerase_deHydtase_N. DR InterPro; IPR005886; GalE. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01370; Epimerase; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01179; galE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Isomerase {ECO:0000256|RuleBase:RU004966}; KW NAD {ECO:0000256|RuleBase:RU004966}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 344 AA; 38900 MW; 275888B0E3632336 CRC64; MALLFTGACG YIGSHTARAF LEKTKENIII VDDLSTGFLE HLKALEHYYP NRVVFIQANL NETHKLDAFL NKQQLKDPIE AILHFGAKIS VEESTHLPLE YYTNNTLNTL ELVKLCLKHA IKRFIFSSTA VVYGESSSSL NEESPLNPIN PYGASKMMSE RILLDTSKIA DFKCVILRYF NVAGACMHND YTTPYTLGQR TLNATHLIKI ACECAVGKRK KMGIFGTNYP TRDGTCIRDY IHVDDLANAH LASYQTLLEK NKSEIYNVGY NQGHSVKEVI EKVKEISNND FLVEILDKRQ GDPASLIANN AKILQNTSFK PLYNNLDTII KSALDWEEHL LRFQ // ID O25328_HELPY Unreviewed; 1028 AA. AC O25328; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 86. DE SubName: Full=Acriflavine resistance protein (AcrB) {ECO:0000313|EMBL:AAD07671.1}; GN OrderedLocusNames=HP_0607 {ECO:0000313|EMBL:AAD07671.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07671.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07671.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the resistance-nodulation-cell division CC (RND) (TC 2.A.6) family. {ECO:0000256|SAAS:SAAS00536972}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07671.1; -; Genomic_DNA. DR PIR; G64595; G64595. DR RefSeq; NP_207402.1; NC_000915.1. DR RefSeq; WP_000278421.1; NC_018939.1. DR ProteinModelPortal; O25328; -. DR DIP; DIP-3094N; -. DR IntAct; O25328; 5. DR MINT; MINT-179120; -. DR STRING; 85962.HP0607; -. DR PaxDb; O25328; -. DR EnsemblBacteria; AAD07671; AAD07671; HP_0607. DR GeneID; 900026; -. DR KEGG; heo:C694_03140; -. DR KEGG; hpy:HP0607; -. DR PATRIC; 20592493; VBIHelPyl33062_0635. DR eggNOG; ENOG4105BZS; Bacteria. DR eggNOG; COG0841; LUCA. DR KO; K03296; -. DR OMA; VEGANYR; -. DR OrthoDB; EOG6SJJDZ; -. DR BioCyc; HPY:HP0607-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 3.30.2090.10; -; 2. DR InterPro; IPR027463; AcrB_DN_DC_subdom. DR InterPro; IPR001036; Acrflvin-R. DR InterPro; IPR000731; SSD. DR Pfam; PF00873; ACR_tran; 1. DR PRINTS; PR00702; ACRIFLAVINRP. DR SUPFAM; SSF82714; SSF82714; 2. DR PROSITE; PS50156; SSD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 327 344 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 351 371 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 377 401 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 422 442 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 454 481 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 515 532 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 855 874 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 881 901 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 907 932 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 953 972 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 984 1010 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 349 479 SSD (sterol-sensing). FT {ECO:0000259|PROSITE:PS50156}. SQ SEQUENCE 1028 AA; 113740 MW; 7CD2BCD735A70936 CRC64; MYKTAINRPI TTLMFALAIV FFGTMGFKKL SVALFPKIDL PTVVVTTTYP GASAEIIESK VTDKIEEAVM GIDGIKKVTS TSSKNVSIVV IEFELEKPNE EALNDVVNKI SSVRFDDSNI KKPSINKFDT DSQAIISLFV SSSSVPATTL NDYAKNTIKP MLQKINGVGG VQLNGFRERQ IRIYANPTLM NKYNLTYADL FSTLKAENVE IDGGRIVNSQ REFSILINAN SYSVADVEKI QVGNHVRLGD IAKIEIGLEE DNTFASFKDK PGVILEIQKI AGANEIEIVD RVYEALKRIQ AISPNYEIRP FLDTTGYIRT SIEDVKFDLV LGAILAVLVV FAFLRNGTIT LVSAISIPIS IMGTFALIQW MGFSLNMLTM VALTLAIGII IDDAIVVIEN IHKKLEMGMS KRKASYEGVR EIGFALVAIS AMLLSVFVPI GNMKGIIGRF FQSFGITVAL AIALSYVVVV TIIPMVSSVV VNPRHSRFYV WSEPFFKALE SRYTKLLQWV LNHKIIISIA VVLVFVGSLF VASKIGMEFM LKEDRGRFLV WLKAKPGVSI DYMTQKSKIF QKAIEKHAEV EFTTLQVGYG TTQNPFKAKI FVQLKPLKER KKEHQLGQFE LMSVLRKELR SLPEAKGLDT INLSEVTLIG GGGDSSPFQT FVFSHSQEAV DKSVENLKKF LLESPELKGK VESYHTSTSE SQPQLQLKIL RQNANKYGVS AQTIGSVVSS AFSGTSQASV FKEDGKEYDM IIRVPDDKRV SVEDIKRLQV RNKYDKLMFL DALVEITETK SPSSISRYNR QRSVTVLAEP NRNAGVSLGE ILTQVSKNTK EWLVEGANYR FTGEADNAKE SNGEFLVALA TAFVLIYMIL AALYESILEP FIIMVTMPLS FSGAFFALGL VHQPLSMFSM IGLILLIGMV GKNATLLIDV ANEERKKGLN IQEAILFAGK TRLRPILMTT IAMVCGMLPL ALASGDGAAM KSPIGIAMSG GLMISMVLSL LIVPVFYRLL APIDDKIKRF YQNQKTLE // ID O25448_HELPY Unreviewed; 126 AA. AC O25448; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 97. DE RecName: Full=Flagellar protein FliS {ECO:0000256|PIRNR:PIRNR039090}; GN OrderedLocusNames=HP_0753 {ECO:0000313|EMBL:AAD07803.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07803.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07803.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3IQC, ECO:0000213|PDB:3K1I} RP X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS). RX PubMed=20581225; DOI=10.1096/fj.10-155242; RA Lam W.W., Woo E.J., Kotaka M., Tam W.K., Leung Y.C., Ling T.K., RA Au S.W.; RT "Molecular interaction of flagellar export chaperone FliS and RT cochaperone HP1076 in Helicobacter pylori."; RL FASEB J. 24:4020-4032(2010). CC -!- INTERACTION: CC Q07911:flaB; NbExp=3; IntAct=EBI-7499990, EBI-7500186; CC O25709:HP_1076; NbExp=3; IntAct=EBI-7499990, EBI-7608416; CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol CC {ECO:0000256|PIRNR:PIRNR039090}. CC -!- SIMILARITY: Belongs to the FliS family. CC {ECO:0000256|PIRNR:PIRNR039090}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07803.1; -; Genomic_DNA. DR PIR; A64614; A64614. DR RefSeq; NP_207546.1; NC_000915.1. DR RefSeq; WP_001199081.1; NC_018939.1. DR PDB; 3IQC; X-ray; 2.70 A; A/B=1-126. DR PDB; 3K1I; X-ray; 2.70 A; A/B=1-126. DR PDBsum; 3IQC; -. DR PDBsum; 3K1I; -. DR ProteinModelPortal; O25448; -. DR DIP; DIP-3458N; -. DR IntAct; O25448; 19. DR MINT; MINT-160305; -. DR STRING; 85962.HP0753; -. DR PaxDb; O25448; -. DR EnsemblBacteria; AAD07803; AAD07803; HP_0753. DR GeneID; 899333; -. DR KEGG; heo:C694_03875; -. DR KEGG; hpy:HP0753; -. DR PATRIC; 20592795; VBIHelPyl33062_0786. DR eggNOG; ENOG4105MQ3; Bacteria. DR eggNOG; COG1516; LUCA. DR KO; K02422; -. DR OMA; AKRHMEA; -. DR OrthoDB; EOG6N687W; -. DR BioCyc; HPY:HP0753-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009288; C:bacterial-type flagellum; IEA:InterPro. DR GO; GO:0005829; C:cytosol; IEA:UniProtKB-SubCell. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:UniProtKB-KW. DR Gene3D; 1.20.120.340; -; 1. DR InterPro; IPR003713; FliS. DR Pfam; PF02561; FliS; 1. DR PIRSF; PIRSF039090; Flis; 1. DR SUPFAM; SSF101116; SSF101116; 1. DR TIGRFAMs; TIGR00208; fliS; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3IQC, ECO:0000213|PDB:3K1I}; KW Bacterial flagellum biogenesis {ECO:0000256|PIRNR:PIRNR039090}; KW Cell projection {ECO:0000313|EMBL:AAD07803.1}; KW Cilium {ECO:0000313|EMBL:AAD07803.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Cytoplasm {ECO:0000256|PIRNR:PIRNR039090}; KW Flagellum {ECO:0000313|EMBL:AAD07803.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 126 AA; 14543 MW; 14DD521E4BBB0587 CRC64; MQYANAYQAY QHNRVSVESP AKLIEMLYEG ILRFSSQAKR CIENEDIEKK IYYINRVTDI FTELLNILDY EKGGEVAVYL TGLYTHQIKV LTQANVENDA SKIDLVLNVA RGLLEAWREI HSDELA // ID O25255_HELPY Unreviewed; 330 AA. AC O25255; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 77. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD07586.1}; GN OrderedLocusNames=HP_0518 {ECO:0000313|EMBL:AAD07586.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07586.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07586.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4XZZ, ECO:0000213|PDB:4Y4V} RP X-RAY CRYSTALLOGRAPHY (2.03 ANGSTROMS) OF 13-330. RX PubMed=26306031; DOI=10.1074/jbc.M115.658781; RA Kim H.S., Im H.N., An D.R., Yoon J.Y., Jang J.Y., Mobashery S., RA Hesek D., Lee M., Yoo J., Cui M., Choi S., Kim C., Lee N.K., Kim S.J., RA Kim J.Y., Bang G., Han B.W., Lee B.I., Yoon H.J., Suh S.W.; RT "The Cell Shape-determining Csd6 Protein from Helicobacter pylori RT Constitutes a New Family of l,d-Carboxypeptidase."; RL J. Biol. Chem. 290:25103-25117(2015). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07586.1; -; Genomic_DNA. DR PIR; F64584; F64584. DR RefSeq; NP_207315.1; NC_000915.1. DR RefSeq; WP_000757130.1; NC_018939.1. DR PDB; 4XZZ; X-ray; 2.03 A; A/B=13-330. DR PDB; 4Y4V; X-ray; 2.04 A; A/B=13-330. DR PDBsum; 4XZZ; -. DR PDBsum; 4Y4V; -. DR ProteinModelPortal; O25255; -. DR DIP; DIP-3322N; -. DR IntAct; O25255; 2. DR MINT; MINT-171745; -. DR STRING; 85962.HP0518; -. DR PaxDb; O25255; -. DR EnsemblBacteria; AAD07586; AAD07586; HP_0518. DR GeneID; 900044; -. DR KEGG; heo:C694_02665; -. DR KEGG; hpy:HP0518; -. DR PATRIC; 20592313; VBIHelPyl33062_0545. DR eggNOG; ENOG4108RUE; Bacteria. DR eggNOG; COG3034; LUCA. DR OMA; NTKGCIA; -. DR OrthoDB; EOG67DPPQ; -. DR BioCyc; HPY:HP0518-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:InterPro. DR InterPro; IPR005490; LD_TPept_cat_dom. DR InterPro; IPR032710; NTF2-like_dom. DR Pfam; PF03734; YkuD; 1. DR SUPFAM; SSF54427; SSF54427; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4XZZ, ECO:0000213|PDB:4Y4V}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 92 193 YkuD. {ECO:0000259|Pfam:PF03734}. SQ SEQUENCE 330 AA; 38618 MW; 9AB2C205C9DE603F CRC64; MKKVLPALLM GFVGLNASDR LLEIMRLYQK QGLEMVGQKL DSYLADKSFW AEELQNKDTD FGYYQNKQFL FVANKSKPSL EFYEIENNML KKINSSKALV GSKKGDKTLE GDLATPIGVY RITQKLERLD QYYGVLAFVT NYPNLYDTLK KRTGHGIWVH GMPLNGDRNE LNTKGCIAIE NPLLSSYDKV LKGEKAFLIT YEDKFFPSTK EELSMILSSL FQWKEAWARG DFERYMRFYN PNFTRYDGMK FNAFKEYKKR VFAKNEKKNI AFSSINVIPY PNSQNKRLFY VVFDQDYKAY QHNKLSYSSN SQKELYIEIE NNQVSIIMEK // ID O24895_HELPY Unreviewed; 823 AA. AC O24895; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 113. DE SubName: Full=Adenine/cytosine DNA methyltransferase {ECO:0000313|EMBL:AAD07124.1}; GN OrderedLocusNames=HP_0054 {ECO:0000313|EMBL:AAD07124.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07124.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07124.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07124.1; -; Genomic_DNA. DR PIR; F64526; F64526. DR RefSeq; NP_206855.1; NC_000915.1. DR RefSeq; WP_000895775.1; NC_018939.1. DR ProteinModelPortal; O24895; -. DR DIP; DIP-3112N; -. DR IntAct; O24895; 1. DR MINT; MINT-186324; -. DR STRING; 85962.HP0054; -. DR REBASE; 56868; M.Hpy26695ORF255P. DR PaxDb; O24895; -. DR EnsemblBacteria; AAD07124; AAD07124; HP_0054. DR GeneID; 899186; -. DR KEGG; heo:C694_00255; -. DR KEGG; hpy:HP0054; -. DR PATRIC; 20591309; VBIHelPyl33062_0056. DR eggNOG; ENOG41081PU; Bacteria. DR eggNOG; COG0270; LUCA. DR eggNOG; COG0827; LUCA. DR KO; K00558; -. DR OMA; VFRDRQI; -. DR OrthoDB; EOG6BKJ40; -. DR BioCyc; HPY:HP0054-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR018117; C5_DNA_meth_AS. DR InterPro; IPR001525; C5_MeTfrase. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR007848; Small_mtfrase_dom. DR Pfam; PF00145; DNA_methylase; 1. DR Pfam; PF05175; MTS; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR PROSITE; PS00094; C5_MTASE_1; 1. DR PROSITE; PS00092; N6_MTASE; 1. DR PROSITE; PS51679; SAM_MT_C5; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07124.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07124.1}. FT DOMAIN 8 338 SAM-dependent_MTases. FT {ECO:0000259|Pfam:PF00145}. SQ SEQUENCE 823 AA; 95114 MW; DEDAB2FFE67A6FD1 CRC64; MLFDQTLTYI SLFSGAGVGC YGLLEEGFEC VATNEILEKR LNIQRINRKC KLDESYISGD IKKPETKEKI LKQIEFYSKK FGNDRVDLVV ATPPCQGMSV ANHKKKNDEI KRNSLVVESI DLIKQIKPRF FILENVPSFY KTGCIDKNDN LLEIGSMIEQ NLSGDYMLYD EVINFKNFGA NSSRTRTLVI GVCKEFKDFI SALEFFPDFK QEKTLKEVIG SLKPLAWGEY DNTDFYHSFR TYPKHMQEWI KDLKEGQSAF ENTELNKKPH RIVGSKIVLN VSKNGDKYKR QKYHSVAPCI HTRNDQMASQ NTIHPKDDRV FSIRELMLLM NIPSRFKWLD LELQELNALN QQEKEKISKQ NEMNIRQSIG EAVPTIIFKQ IAIKIKNFMS QTHLEPKEII RLIDVHHLLE PQNLKRFILE NQNKIARASL VSLAEMSNSK RIEKSAYFTN PFIINEIAKL LPSFKQESVT IIEPSAGCGN FLSALFKKYT SVKKVYLKCI DIDKNSLEIL EILYKDCIPN NFEMELICKD FLAYECGKVD LIVGNPPFGK THERFKDYSL RLTHLAGIFL EKSLKLANFT AMVMPKNLLN TKEYAETRTK LEKKGVGAIL DFGELGFKGV LVETIAIVTQ KSKEVLARSL PLNLSIKQKP SYIFDKQLPY WVIYRNAFFD KVFHSMQFGL FEVFRDRQIT NSVLVKNGIR VIKSRNIDEN GKIISIENYD SYIQKEVLSP FKIASFLDRD DVYLTPNMTY KPRILKKEKG YVVNGSVAIL IPKNPISLSK KQCDYISSVE FRDFYKIARN YQTRTLNIDS MSCFWFGILR SSL // ID O25306_HELPY Unreviewed; 123 AA. AC O25306; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 94. DE SubName: Full=Flagellar switch protein (FliN) {ECO:0000313|EMBL:AAD07636.1}; GN OrderedLocusNames=HP_0584 {ECO:0000313|EMBL:AAD07636.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07636.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07636.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07636.1; -; Genomic_DNA. DR PIR; H64592; H64592. DR RefSeq; NP_207379.1; NC_000915.1. DR RefSeq; WP_000004827.1; NC_018939.1. DR ProteinModelPortal; O25306; -. DR DIP; DIP-3483N; -. DR IntAct; O25306; 2. DR MINT; MINT-181297; -. DR STRING; 85962.HP0584; -. DR PaxDb; O25306; -. DR EnsemblBacteria; AAD07636; AAD07636; HP_0584. DR GeneID; 899283; -. DR KEGG; heo:C694_03010; -. DR KEGG; hpy:HP0584; -. DR PATRIC; 20592443; VBIHelPyl33062_0610. DR eggNOG; ENOG4108ZEI; Bacteria. DR eggNOG; COG1886; LUCA. DR KO; K02417; -. DR OMA; ELSWMDY; -. DR OrthoDB; EOG6Q5NX5; -. DR BioCyc; HPY:HP0584-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:InterPro. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR InterPro; IPR012826; FliN. DR InterPro; IPR001172; FliN_T3SS_HrcQb. DR InterPro; IPR001543; SpoA. DR Pfam; PF01052; FliMN_C; 1. DR PRINTS; PR00956; FLGMOTORFLIN. DR SUPFAM; SSF101801; SSF101801; 1. DR TIGRFAMs; TIGR02480; fliN; 1. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD07636.1}; KW Cilium {ECO:0000313|EMBL:AAD07636.1}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07636.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 40 111 FliMN_C. {ECO:0000259|Pfam:PF01052}. FT COILED 2 29 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 123 AA; 13942 MW; D6CCD8284509D0B3 CRC64; MSETEANKLK VAEKEKEKAN KERELELSTY LEELICDYKN LLDMEIVFSA ELGSTQIPLL QILRFEKGSV IDLQKPAGES VDTFVNGRVI GKGEVMVFER NLAIRLNEIL DSNAIVYYLA KNS // ID O26012_HELPY Unreviewed; 218 AA. AC O26012; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE RecName: Full=Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; GN OrderedLocusNames=HP_1477 {ECO:0000313|EMBL:AAD08529.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08529.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08529.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the assembly process of the P-ring CC formation. It may associate with FlgF on the rod constituting a CC structure essential for the P-ring assembly or may act as a CC modulator protein for the P-ring assembly. CC {ECO:0000256|RuleBase:RU362063}. CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|RuleBase:RU362063}. CC -!- SIMILARITY: Belongs to the FlgA family. CC {ECO:0000256|RuleBase:RU362063}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08529.1; -; Genomic_DNA. DR PIR; E64704; E64704. DR RefSeq; NP_208268.1; NC_000915.1. DR RefSeq; WP_000697639.1; NC_018939.1. DR ProteinModelPortal; O26012; -. DR IntAct; O26012; 1. DR STRING; 85962.HP1477; -. DR PaxDb; O26012; -. DR EnsemblBacteria; AAD08529; AAD08529; HP_1477. DR GeneID; 899815; -. DR KEGG; heo:C694_07650; -. DR KEGG; hpy:HP1477; -. DR PATRIC; 20594365; VBIHelPyl33062_1551. DR eggNOG; ENOG4106EBH; Bacteria. DR eggNOG; COG1261; LUCA. DR KO; K02386; -. DR OMA; HFIPPNT; -. DR OrthoDB; EOG68SVX8; -. DR BioCyc; HPY:HP1477-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell. DR GO; GO:0044781; P:bacterial-type flagellum organization; IEA:UniProtKB-KW. DR InterPro; IPR017585; Flag_basal_body_FlgA_C. DR Pfam; PF13144; ChapFlgA; 1. DR TIGRFAMs; TIGR03170; flgA_cterm; 1. PE 3: Inferred from homology; KW Bacterial flagellum biogenesis {ECO:0000256|RuleBase:RU362063}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Periplasm {ECO:0000256|RuleBase:RU362063}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|RuleBase:RU362063}. FT SIGNAL 1 18 {ECO:0000256|RuleBase:RU362063}. FT CHAIN 19 218 Flagella basal body P-ring formation FT protein FlgA. FT {ECO:0000256|RuleBase:RU362063}. FT /FTId=PRO_5005142232. FT DOMAIN 23 217 ChapFlgA. {ECO:0000259|Pfam:PF13144}. SQ SEQUENCE 218 AA; 24307 MW; D3F2404BF9CCF896 CRC64; MKILILFFIC LNALFALDSN ALKAEIKEVY LKEYKDLKLE IETINLEIPE RFSNASILSY ELNASNKLKK DGVVFLRLEN DPNLRLPVRY SVIGSMQAFK SVSAIKKDEN ITANNTQKER ILFGALSNPL LEGAIDKVSA KNFIPPNTLL STDKTQALII VRKNDIITGV YEEGQISIEI SLKALENGAL NQIIQAKNLE SNKILKAKVL SSSKAQIL // ID O25365_HELPY Unreviewed; 196 AA. AC O25365; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07718.1}; GN OrderedLocusNames=HP_0650 {ECO:0000313|EMBL:AAD07718.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07718.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07718.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25841:ssb; NbExp=3; IntAct=EBI-527960, EBI-527972; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07718.1; -; Genomic_DNA. DR PIR; B64601; B64601. DR RefSeq; NP_207444.1; NC_000915.1. DR RefSeq; WP_010875512.1; NC_018939.1. DR ProteinModelPortal; O25365; -. DR DIP; DIP-3466N; -. DR IntAct; O25365; 7. DR MINT; MINT-160266; -. DR STRING; 85962.HP0650; -. DR PaxDb; O25365; -. DR PRIDE; O25365; -. DR EnsemblBacteria; AAD07718; AAD07718; HP_0650. DR GeneID; 899302; -. DR KEGG; hpy:HP0650; -. DR PATRIC; 20592585; VBIHelPyl33062_0681. DR eggNOG; COG1573; LUCA. DR KO; K02334; -. DR OMA; NYPLKDC; -. DR OrthoDB; EOG6MM1KJ; -. DR BioCyc; HPY:HP0650-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.470.10; -; 1. DR InterPro; IPR005122; Uracil-DNA_glycosylase-like. DR Pfam; PF03167; UDG; 1. DR SUPFAM; SSF52141; SSF52141; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 48 184 UDG. {ECO:0000259|Pfam:PF03167}. SQ SEQUENCE 196 AA; 22289 MW; F16DAC6A7F2D5F67 CRC64; MERLLGETYT NTNLDKPQNK PLNKQVYEGI ENCNLCKRHQ NSKPVIGLFN PTSKLTFITL TPMLDSQLNF LNNLKAAMLE SIIQKVFNCP LKDCSILSLL KCDSNSLNLE EEINACLFHL TWQLDNSASK VIVVFGEILP KRLLNLSKEE SFGRIVSLKT KHFLSTHALE DMLKNPTLKK EALAHFKIAL QFLNQS // ID O25666_HELPY Unreviewed; 278 AA. AC O25666; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 87. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08070.1}; GN OrderedLocusNames=HP_1022 {ECO:0000313|EMBL:AAD08070.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08070.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08070.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08070.1; -; Genomic_DNA. DR PIR; F64647; F64647. DR RefSeq; NP_207812.1; NC_000915.1. DR RefSeq; WP_000556224.1; NC_000915.1. DR ProteinModelPortal; O25666; -. DR IntAct; O25666; 2. DR STRING; 85962.HP1022; -. DR PaxDb; O25666; -. DR EnsemblBacteria; AAD08070; AAD08070; HP_1022. DR GeneID; 899557; -. DR KEGG; heo:C694_05290; -. DR KEGG; hpy:HP1022; -. DR PATRIC; 20593381; VBIHelPyl33062_1071. DR eggNOG; COG0258; LUCA. DR KO; K02335; -. DR OMA; VIASMDK; -. DR OrthoDB; EOG6ZD66P; -. DR BioCyc; HPY:HP1022-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1010; -; 1. DR InterPro; IPR020046; 5-3_exonucl_a-hlix_arch_N. DR InterPro; IPR020045; 5-3_exonuclease_C. DR InterPro; IPR002421; 5-3_exonuclease_N. DR InterPro; IPR008918; HhH2. DR InterPro; IPR029060; PIN_domain-like. DR Pfam; PF02739; 5_3_exonuc_N; 1. DR SMART; SM00475; 53EXOc; 1. DR SMART; SM00279; HhH2; 1. DR SUPFAM; SSF47807; SSF47807; 1. DR SUPFAM; SSF88723; SSF88723; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|SAAS:SAAS00427491}; KW Nuclease {ECO:0000256|SAAS:SAAS00427491}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 278 AA; 32746 MW; 0C34C8B7E97271E0 CRC64; MHSRTLLLDI DCVIPNIVRR LLSNKTLPKR FAAYSLQEVG VIFLTTQILS IMHKTRCSKT LFFITRGRES FRYQLCDHYK QKRHQFDEDF KALLRTLKIA IVEKYPLKKG AKIQGEHCFE YEADDIISFY KKKDPNNYVI ASMDKDILYS NRGSHFNLKT NAFFNVSQKE AHFFAYYQCV VGDKGDNIKG VKGIGGFNYK DFLNEDAKEH ELWEQIIQAF KIKEDLSDSE AKEKALLNMR LVNMHQMTHH GVIKLWEPEF KKTFFPKKPQ RPDFKRIS // ID O25566_HELPY Unreviewed; 605 AA. AC O25566; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE RecName: Full=Flagellar basal body protein {ECO:0000256|RuleBase:RU362116}; GN OrderedLocusNames=HP_0908 {ECO:0000313|EMBL:AAD07954.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07954.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07954.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|RuleBase:RU362116}. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000256|RuleBase:RU362116}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07954.1; -; Genomic_DNA. DR PIR; D64633; D64633. DR RefSeq; NP_207700.1; NC_000915.1. DR RefSeq; WP_001000225.1; NC_018939.1. DR ProteinModelPortal; O25566; -. DR DIP; DIP-3236N; -. DR IntAct; O25566; 2. DR MINT; MINT-170919; -. DR STRING; 85962.HP0908; -. DR PaxDb; O25566; -. DR EnsemblBacteria; AAD07954; AAD07954; HP_0908. DR GeneID; 899437; -. DR KEGG; heo:C694_04675; -. DR KEGG; hpy:HP0908; -. DR PATRIC; 20593117; VBIHelPyl33062_0944. DR eggNOG; ENOG4108RHW; Bacteria. DR eggNOG; COG1749; LUCA. DR KO; K02390; -. DR OMA; NGEMTIN; -. DR OrthoDB; EOG67MDZ5; -. DR BioCyc; HPY:HP0908-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:UniProtKB-UniRule. DR InterPro; IPR019776; Flagellar_basal_body_rod_CS. DR InterPro; IPR020013; Flagellar_FlgE/F/G. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR Pfam; PF06429; Flg_bbr_C; 1. DR TIGRFAMs; TIGR03506; FlgEFG_subfam; 2. DR PROSITE; PS00588; FLAGELLA_BB_ROD; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|RuleBase:RU362116}; KW Cell projection {ECO:0000313|EMBL:AAD07954.1}; KW Cilium {ECO:0000313|EMBL:AAD07954.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07954.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 514 603 Flg_bbr_C. {ECO:0000259|Pfam:PF06429}. SQ SEQUENCE 605 AA; 67122 MW; E785C7AE9CADE0CA CRC64; MNDTLLNAYS GIKTHQFGID SLSNNIANVN TLGYRSNDPE FKTLFSSHLD ALNAKSVVAN DRNYGVTGSG NVLSNKDGEY MPSEGEFHMA YQGKGWFVIG PNKNGEITIN KDGFSKKQDN FLTRAGNFAR DADGYLVTPE GYYVYGIDLK KIKDGTLNST ARDEDIEKLH GNTLSPLQIP QDLTYQPVLS TKVNISVNLN PKDHLKGVQD FFLNDKGEII KERFLNQDIN ALANNDNEPI DAITNRKLNI SIQKEDGKKE DFVFTYGDAE KGENQFKTLG DLQKLLKEKT GLDLNLIKSE KDAKSPPLLL EIANPSQTPI TFSLSGGIAD KLGLKADGME LKKGISRDSV AIKIPYYSTE VDIYDKAGDK YLLQSEYYMT NSNDPTSSPT SKRKNQTWEV KSYIADPKNK TPINDPTWEI VGFDSATHKM KSAPMTLDFK GNKLTYSLDK SENHDSSDLS YQDSKLLEAS QDGKPRGIFR DMRIEENGVI SLAFSNGVVE PVARIGILAF TNDQGLRKIG GNLYEMQEGT INGENRPLSG NPILGWDEEG KLKFGKIRHK YLETSNVNAG NALTNLILMQ RGYSMNARAF GAGDDMIKEA ISLKK // ID O24973_HELPY Unreviewed; 225 AA. AC O24973; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 113. DE SubName: Full=Response regulator (OmpR) {ECO:0000313|EMBL:AAD07234.1}; GN OrderedLocusNames=HP_0166 {ECO:0000313|EMBL:AAD07234.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07234.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07234.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains OmpR/PhoB-type DNA-binding domain. CC {ECO:0000256|SAAS:SAAS00583175}. CC -!- SIMILARITY: Contains response regulatory domain. CC {ECO:0000256|SAAS:SAAS00122777}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07234.1; -; Genomic_DNA. DR PIR; F64540; F64540. DR RefSeq; NP_206965.1; NC_000915.1. DR RefSeq; WP_000573710.1; NC_018939.1. DR ProteinModelPortal; O24973; -. DR IntAct; O24973; 3. DR STRING; 85962.HP0166; -. DR PaxDb; O24973; -. DR EnsemblBacteria; AAD07234; AAD07234; HP_0166. DR GeneID; 898894; -. DR KEGG; heo:C694_00820; -. DR KEGG; hpy:HP0166; -. DR PATRIC; 20591553; VBIHelPyl33062_0176. DR eggNOG; ENOG4105DPZ; Bacteria. DR eggNOG; COG0745; LUCA. DR KO; K02483; -. DR OMA; SHEVTID; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP0166-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001867; OmpR/PhoB-type_DNA-bd. DR InterPro; IPR016032; Sig_transdc_resp-reg_C-effctor. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00072; Response_reg; 1. DR Pfam; PF00486; Trans_reg_C; 1. DR SMART; SM00448; REC; 1. DR SMART; SM00862; Trans_reg_C; 1. DR SUPFAM; SSF46894; SSF46894; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS51755; OMPR_PHOB; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00582919}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transcription {ECO:0000256|SAAS:SAAS00275006}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00275006}; KW Two-component regulatory system {ECO:0000256|SAAS:SAAS00583142}. FT DOMAIN 3 116 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. FT DOMAIN 123 225 OmpR/PhoB-type DNA-binding. FT {ECO:0000259|PROSITE:PS51755}. SQ SEQUENCE 225 AA; 25856 MW; B4845F9A662CB682 CRC64; MIEVLMIEDD IELAEFLSEF LLQHGIHVTN YDEPYTGISA ANTQNYDLLL LDLTLPNLDG LEVCRRISKQ KHIPIIISSA RSDVEDKIKA LDYGADDYLP KPYDPKELLA RIQSLLRRSH KKEEVSEPGD ANIFRVDKDS REVYMHEKKL DLTRAEYEIL SLLISKKGYV FSRESIAIES ESINPESSNK SIDVIIGRLR SKIEKNPKQP QYIISVRGIG YKLEY // ID O24916_HELPY Unreviewed; 309 AA. AC O24916; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE RecName: Full=Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; DE EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446}; GN OrderedLocusNames=HP_0090 {ECO:0000313|EMBL:AAD07158.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07158.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07158.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: Malonyl-CoA + an [acyl-carrier-protein] = CoA CC + a malonyl-[acyl-carrier-protein]. CC {ECO:0000256|PIRNR:PIRNR000446}. CC -!- SIMILARITY: Belongs to the fabD family. CC {ECO:0000256|PIRNR:PIRNR000446}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07158.1; -; Genomic_DNA. DR PIR; B64531; B64531. DR RefSeq; NP_206890.1; NC_000915.1. DR RefSeq; WP_001199067.1; NC_018939.1. DR ProteinModelPortal; O24916; -. DR SMR; O24916; 1-309. DR IntAct; O24916; 1. DR STRING; 85962.HP0090; -. DR PaxDb; O24916; -. DR EnsemblBacteria; AAD07158; AAD07158; HP_0090. DR GeneID; 899113; -. DR KEGG; heo:C694_00440; -. DR KEGG; hpy:HP0090; -. DR PATRIC; 20591389; VBIHelPyl33062_0095. DR eggNOG; ENOG4105CJF; Bacteria. DR eggNOG; COG0331; LUCA. DR KO; K00645; -. DR OMA; NEAYHNK; -. DR OrthoDB; EOG6W19KW; -. DR BioCyc; HPY:HP0090-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004314; F:[acyl-carrier-protein] S-malonyltransferase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.366.10; -; 2. DR InterPro; IPR001227; Ac_transferase_dom. DR InterPro; IPR014043; Acyl_transferase. DR InterPro; IPR016035; Acyl_Trfase/lysoPLipase. DR InterPro; IPR024925; Malonyl_CoA-ACP_transAc. DR InterPro; IPR004410; Malonyl_CoA-ACP_transAc_FabD. DR InterPro; IPR016036; Malonyl_transacylase_ACP-bd. DR InterPro; IPR020801; PKS_acyl_transferase. DR Pfam; PF00698; Acyl_transf_1; 1. DR PIRSF; PIRSF000446; Mct; 1. DR SMART; SM00827; PKS_AT; 1. DR SUPFAM; SSF52151; SSF52151; 2. DR SUPFAM; SSF55048; SSF55048; 1. DR TIGRFAMs; TIGR00128; fabD; 1. PE 3: Inferred from homology; KW Acyltransferase {ECO:0000256|PIRNR:PIRNR000446}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|PIRNR:PIRNR000446}. SQ SEQUENCE 309 AA; 34389 MW; 37FCD31D1073A050 CRC64; MQYALLFPGQ GSQCVGMGKS FYESHTLAKE LFERASNALK VDMKKTLFEE NELLKESAYT QPAIYLVSYI AYQLLNKQVN GGLKPVFALG HSLGEVSAVS LSGALDFEKA LKLTHQRGKM MQEACANKDA SMMVVLGVSE ESLLSLCQRT KNVWCANFNG GMQVVLAGIK DDLKALEPTL KEMGAKRVVF LEMSVASHCP FLEPMTFKFQ ELLEKSLKDK FHFEIISNAT NEAYHNKAKA VELLSLQLTQ PVRYQDCVKS NNDRVDVFFE LGCGSVLKGL NKRLSNKPTI SVGDNKGLDE AIEFLEEYV // ID O25761_HELPY Unreviewed; 759 AA. AC O25761; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08188.1}; GN OrderedLocusNames=HP_1142 {ECO:0000313|EMBL:AAD08188.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08188.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08188.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08188.1; -; Genomic_DNA. DR PIR; F64662; F64662. DR RefSeq; NP_207933.1; NC_000915.1. DR RefSeq; WP_010875596.1; NC_000915.1. DR ProteinModelPortal; O25761; -. DR DIP; DIP-3557N; -. DR IntAct; O25761; 2. DR MINT; MINT-160806; -. DR STRING; 85962.HP1142; -. DR PaxDb; O25761; -. DR PRIDE; O25761; -. DR EnsemblBacteria; AAD08188; AAD08188; HP_1142. DR GeneID; 899679; -. DR KEGG; hpy:HP1142; -. DR PATRIC; 20593629; VBIHelPyl33062_1194. DR eggNOG; ENOG4105ECE; Bacteria. DR eggNOG; COG4694; LUCA. DR OMA; GIFTLGK; -. DR OrthoDB; EOG6XSZS7; -. DR BioCyc; HPY:HP1142-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR026866; CR006/PrrC. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13166; AAA_13; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 113 140 {ECO:0000256|SAM:Coils}. FT COILED 383 424 {ECO:0000256|SAM:Coils}. FT COILED 451 478 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 759 AA; 88753 MW; E608F13F7EEDA54E CRC64; MSVNSNGNKD KQQQNVSSGI SQISLKKVAT FDENGASFEN LNSINFIYGA NGSGKTTTSS FLKNLAENGI EDKFANSKIA WYNNESLKIE VYNKQFKEEQ LRNSQVKGIF TLGKKTNENL EKIESKKESI NKENEKKIKN EASLQVLTQK KEKEEKDFAD RCWEKLYKKN EEDFKETLEG FKRKEKFKEK ILKEFENDKY NQSEIVGLEK LKEKIEIVFG ENQTELALLE CNLTDFDFIE NHSIWEQKIV GSGDAAIADL IKRLSNEDWV AQGREYIKDN SICPFCQKET ITEEFKKQLE SYFDTSYQES IETIKEKMED YASRTAGALE RLDKIVETEQ KNQQTKLDTE NLKIIIETLR SKINGNQQKM LDKSKEMSRN FKLDSTKNEI DAIKDLIKKA NEQIANYNEM IKDIEKQKKS CKEQTWKFLV NEFKSDIQEY NKKYCGLEKG INNLEKAISE NQEEVKKLEN EIKELEKTMV SIKPIVNEIN TLLKGYGFAN FSLACTEDEK FYRIQREDGQ LVGETLSEGE VTFITFLYYY HLAKGSLEEN DISKNKVLVI DDPISSLDSN ILFIVSVLVK DLMKEAMEEK TNIKQVIILT HNTYFYKEIT LECDLKRYQG KYSFWIIKKD NNVSKIKDYK ENPIKNSYEL LWQEVKQAKE NNASWVSLQN VMRRIIEYYF RILGGFKHND SLSECFENIE EKRVCNSFIS WFNDGSHGIS DDLFMQSQDT SIETYLKVFE KIFKETGHEA HYKMMMRMK // ID O25784_HELPY Unreviewed; 223 AA. AC O25784; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 106. DE SubName: Full=Glutamine ABC transporter, permease protein (GlnP) {ECO:0000313|EMBL:AAD08216.1}; GN OrderedLocusNames=HP_1170 {ECO:0000313|EMBL:AAD08216.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08216.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08216.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032, CC ECO:0000256|SAAS:SAAS00561696}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08216.1; -; Genomic_DNA. DR PIR; B64666; B64666. DR RefSeq; NP_207961.1; NC_000915.1. DR RefSeq; WP_000538549.1; NC_018939.1. DR ProteinModelPortal; O25784; -. DR STRING; 85962.HP1170; -. DR PaxDb; O25784; -. DR EnsemblBacteria; AAD08216; AAD08216; HP_1170. DR GeneID; 899930; -. DR KEGG; heo:C694_06045; -. DR KEGG; hpy:HP1170; -. DR PATRIC; 20593693; VBIHelPyl33062_1225. DR eggNOG; ENOG4105FBX; Bacteria. DR eggNOG; COG0765; LUCA. DR KO; K02029; -. DR OMA; QIVVLAC; -. DR OrthoDB; EOG6MM1R5; -. DR BioCyc; HPY:HP1170-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR010065; AA_ABC_transptr_permease_3TM. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR01726; HEQRo_perm_3TM; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00450258}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450258, ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450217}. FT TRANSMEM 20 53 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 65 97 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 131 152 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 190 213 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 17 209 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 223 AA; 24752 MW; DC45B4366880820C CRC64; MGVLLELDNL KRLLEGFETT LLIALSSAMI SIIVGMLLGS LMAFGSQIVV LACRVYLESI RIIPLLAWLF IVYFGLASWF DLHISAVLAS VIVFSLWGGA EMMDLTRGVL TSVSKHQIES ALALGLDSKK VIFNIIFPQS FLSLLPSSLN LFTRMIKTTA LVSLIGAIDL LKVGQQIIEL NLLRMPNASF VVYGVILMFY FSLCYSLSLY SSYLEKKFQH IRG // ID O25330_HELPY Unreviewed; 1238 AA. AC O25330; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07677.1}; GN OrderedLocusNames=HP_0609 {ECO:0000313|EMBL:AAD07677.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07677.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07677.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25135:HP_0371; NbExp=3; IntAct=EBI-7493198, EBI-7492921; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07677.1; -; Genomic_DNA. DR PIR; A64596; A64596. DR ProteinModelPortal; O25330; -. DR DIP; DIP-3231N; -. DR IntAct; O25330; 7. DR MINT; MINT-167648; -. DR STRING; 85962.HP0609; -. DR PaxDb; O25330; -. DR PRIDE; O25330; -. DR EnsemblBacteria; AAD07677; AAD07677; HP_0609. DR PATRIC; 20592497; VBIHelPyl33062_0637. DR eggNOG; COG5651; LUCA. DR OrthoDB; EOG65QWD9; -. DR BioCyc; HPY:HP0609-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004311; Vacuolating_cytotoxin_put. DR Pfam; PF03077; VacA2; 3. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 138 197 VacA2. {ECO:0000259|Pfam:PF03077}. FT DOMAIN 555 614 VacA2. {ECO:0000259|Pfam:PF03077}. FT DOMAIN 974 1033 VacA2. {ECO:0000259|Pfam:PF03077}. SQ SEQUENCE 1238 AA; 135063 MW; 66DF754EB1BFB173 CRC64; MTYRSSKTDL KNERFSKNRS FKGIKKKIAK KYTIKNSPLT IYSLKTHSNP SLSINKKIFL GLGFVSALSA EDYNSSVYWL NSVNENNNNK SYYISPLRTW AGGNRNFTQN YNNSQLYIGT KNASSTPNHS SVWFGEKGYV GFITGVFKAK DIFITGAVGS GNEWKTGGGA ILVFESSNEL SANGAYFQNN RAGTQTSWIN LISNNSVNLT NTDFGNQTPN GGFNAMGRKI TYNGGIVNGG NFGFDNVDSN GATTISGVTF NNNGALTYKG GNGIGGSITF TNSNINHYKL NLNANSVTFN NSALGSMPNG NANTIGNAYI LNASNITFNN LTFNGGWFVF NIPDAHVNFQ GTTTINNPTS PFVNMTGKVT INPNAIFNIQ NYTPSIGSAY TLFSMKNGSI TYNDVNNLWN IIRLKNTQAT KDADKNHTSS NNNTHTYYVT YNLGGTLYNF RQIFSPDSIV LQSVYYGANN LYYTNSVNIH DNVFNLKNIN DDKADTIFYL NGLNTWNYTN ARFTQTYGGK NSALVFNATT PWANGSIPKS NSTVRFGGYE GVNWGKTGYI TGTFTADRVY ITGNMMTGNG AQTGGGATLN FVGATEINIA GATFKNLKTT SQNSYMTFMA LGDSSGSAKI NVSQSDFYDW TGGGYDFTGN GVFDSVNFNK AYYKFQGTEN SYNFKNTNFL AGNFKFQGKT TIEKSVLSDA SYTFDGTNNT FTEDKFNNGS FNFSHAEQTD AFNNNSFNGG SFSFNAKQVN FSGNSFNGGV FNFNNTPKVS FTDDTFNVNN QFKINGTQTT FTFNKGVVFN MQGLLSSLSV GTTYQLLNAK SVDYKDNNAL YQMLRWISGE NPSGTLVNKD QSAPNSAKIY NVHFTDNGLT YYIKENFNNG ITLTRLCTLG YTHCVNIDND AFNLKNVNNN ASNTVFYLNG MTTWKIAGTG VFTQDYSGAN SVLVFNQTTP FLAGANPTSN SVVSFGKTSG AEWGLVGYIQ GVFKANQIDI TGTIRSGNGA KTGGGATLVF NAQKRLNIAN AHLNNDKAGL QNSWMNFIVN NGNLNVTNAK FSNQTPHGGF NLKANNITWD KGSVNGGGNF GVDNADSNGA TTISGVTFNN NGTLIYKGGE NSAGNSLTLE NNTFNSYNIN AKAQNLIFNN NSFNGGSYSF NDTKNTTFKG TNTLINSDPF SRLKGSVSIE NNSVFNIERD LTDKTTYTLL SGNSIKYNNQ ALAGQCFFKK FMEFNPLWWR TRDSIKSG // ID O25779_HELPY Unreviewed; 324 AA. AC O25779; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 102. DE SubName: Full=Thioredoxin reductase (TrxB) {ECO:0000313|EMBL:AAD08209.1}; GN OrderedLocusNames=HP_1164 {ECO:0000313|EMBL:AAD08209.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08209.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08209.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08209.1; -; Genomic_DNA. DR PIR; D64665; D64665. DR RefSeq; NP_207955.1; NC_000915.1. DR RefSeq; WP_001071022.1; NC_018939.1. DR ProteinModelPortal; O25779; -. DR STRING; 85962.HP1164; -. DR PaxDb; O25779; -. DR EnsemblBacteria; AAD08209; AAD08209; HP_1164. DR GeneID; 899924; -. DR KEGG; heo:C694_06010; -. DR KEGG; hpy:HP1164; -. DR PATRIC; 20593679; VBIHelPyl33062_1218. DR eggNOG; ENOG4107VJE; Bacteria. DR eggNOG; COG0492; LUCA. DR KO; K00384; -. DR OMA; GKMGQPN; -. DR OrthoDB; EOG6QP0XP; -. DR BioCyc; HPY:HP1164-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR000103; Pyridine_nuc-diS_OxRdtase_2. DR PRINTS; PR00469; PNDRDTASEII. DR SUPFAM; SSF51905; SSF51905; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 324 AA; 35986 MW; 0854598651D92B30 CRC64; MNQEILDVLI VGAGPGGIAT AVECEIAGVK KVLLCEKTES HSGMLEKFYK AGKRIDKDYK KQVVELKGHI PFKDSFKEET LENFTNLLKE HHITPSYKTD IESVKKEGEY FKITTTSNTT YHAKFVVVAI GKMGQPNRPT AYKIPVALSK QVVFSINDCK ENEKTLVIGG GNSAVEYAIA LCKTTPTTLN YRKKEFSRIN EDNAKNLQEV LNNNTLKSKL GVDIESLEED NTQIKVNFTD NTSESFDRLL YAIGGSTPLE FFKRCSLELD PSTNIPVVKE NLESNNIPNL FIVGDILFKS GASIATALNH GYDVAIEIAK RLHS // ID O25579_HELPY Unreviewed; 2529 AA. AC O25579; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE SubName: Full=Toxin-like outer membrane protein {ECO:0000313|EMBL:AAD07969.1}; GN OrderedLocusNames=HP_0922 {ECO:0000313|EMBL:AAD07969.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07969.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07969.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07969.1; -; Genomic_DNA. DR PIR; B64635; B64635. DR RefSeq; NP_207714.1; NC_000915.1. DR RefSeq; WP_000874574.1; NC_018939.1. DR ProteinModelPortal; O25579; -. DR DIP; DIP-3306N; -. DR IntAct; O25579; 3. DR MINT; MINT-171498; -. DR STRING; 85962.HP0922; -. DR PaxDb; O25579; -. DR EnsemblBacteria; AAD07969; AAD07969; HP_0922. DR GeneID; 899451; -. DR KEGG; heo:C694_04745; -. DR KEGG; hpy:HP0922; -. DR PATRIC; 20593145; VBIHelPyl33062_0958. DR eggNOG; COG5651; LUCA. DR OMA; FNQGTYN; -. DR OrthoDB; EOG6RVFRD; -. DR BioCyc; HPY:HP0922-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005546; Autotransporte_beta. DR InterPro; IPR004311; Vacuolating_cytotoxin_put. DR Pfam; PF03077; VacA2; 3. DR SMART; SM00869; Autotransporter; 1. DR SUPFAM; SSF103515; SSF103515; 1. DR PROSITE; PS51208; AUTOTRANSPORTER; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2254 2529 Autotransporter (TC 1.B.12). FT {ECO:0000259|PROSITE:PS51208}. FT COILED 528 586 {ECO:0000256|SAM:Coils}. FT COILED 661 695 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 2529 AA; 274563 MW; 440882E8644472EC CRC64; MAFKKARLIS KFISKGSFKL NKISKKIFTL NQILKCEKPL KRHKKALKPI KKLSNRNKSF LKASVLLIGA LGGLSHLRAN ECRYWSWSSW SYQDNIESGP NSPTHNSYCL FSSTQGSGTY YLNTLTTYSA GGASFTQKFN NGTLNVGENI RFGGTGINGG DVGYITGTYD AQTINFNSSH LTTGNSYADG GGATLNFNAA NNITINQASF DNSHAGTQKS YMNFKGSNIK VSGSSFTDDT DGGFSFSGNS NNSTISFNQT SFNQGTYHFS NSATLSFNHS AFNQGTYNFN STQSAFNNSA FNQGTYHFNG NASFDNDTFN QGTYSFNTSK VSFSGINTLN SSSPFASLKG SVSFGSDAIF NLNQTLNNQT YDILTTNGAI QYGVYQSYLW DLINYKGDKA ISHVEVGNNT YDVTFDINGQ DETLQETFNK QSIITQFLGD DLQQQAQKTY QQDLSNSQSA LNNAASDNKI ANSDTDYTKN KNATIKKDAQ GLENTNQQIA QDEQALQGDL DKLKQLANSP TGFSEQAFNQ AQKQEQQDEQ TLQNEEKTFN SEQEGLKQAI QQAQAQQQKQ QQKQEQQQAQ QTYQEDLTHS QSALNDVASD NTIASNDTNY TNNQNTAIKE DAQGLENTNQ QIAQDEQALQ GDLDKLKQLA NSPTGFSEQA FNQAQKQEQQ DEQTLQNEEK TFNSEQERLK QAIANAKPTS PTPSHAPTPT KHTAPNTPPN KVPPTPPTQN PPAESVWSGV YWLQNKTYSN KGIYYIDPNL SGQSGQSGNT LSTYTANLFG RSFSVNIQNG TLIIGNNTES VNSNGLIWIG HGGFGYITGT FSAANIYLTN NFKTGEGVSN SDGGGANITF KASDNITMDG LNYNDAETVT KMIQTGASQH SYATFDALNN ISVTNSSFSD MTWGKFSFSA KNISFSNASF SGFTNPGGSS VISANATNSL SFINSRLNGG AVYNLQANSL IFNNTQAVFN VLYSRGTSNF NATTQLLGNT NFTLSSQSLL NFNGDTTLQN NANITLGNKS QAAFKNSLTL DNNSNLSLDN QSVLNANNTS AFNNQASLNI YNGSQATFNS LFFNGGTLSL NASSKLNASN ASFSNNTTIN LDDSVLSASN TSSLNANINF QGASQADFGG NTIIDTASFN FDSASSLNFN NLTANGALNF NGYTPSLTKA LMSVSGQFVL GNNGDINLSD INIFDNITKS VTYNILNAQK GITGISGANG YEKILFYGMK IQNATYSDNN NIQTWSFINP LNSSQIIQES IKNGDLTIEV LNNPNSASNT IFNIAPELYN YQASKQNPTG YSYDYSDNQA GTYYLTSNIK GLFTPKGSQT PQAPGTYSPF NQPLSSLNIY NKGFSSENLK TLLGILSQNS ATLKEMIESN QLDNITNINE VLQLLDKIKI TQVQKQALLE TINHLTDNIN QTFNNGNLII GATQDNVTNS TSSIWFGGNG YSSPCTLDSA TCSSFRNTYL GQLLGSTSPY LGYINADFKA KSIYITGTIG SGNAFESGGS ADVTFQSANN LVLNKANIEA QATDNIFNLL GQKGIEKIFN QGNLANVLSQ VAMEKIKQAG GLGNFIENAL SPLSKELPAS LQNETLGQLI GQNNLDDLLN NSGVMNAIQN IISKKLSIFG NFVTPSIIEN YLAKQSLKSM LDDKGLLNFI GGYMNASELS SILSVVLKDI TNPPTSLQKD IGVVANDLLN EFLGQDVIKK LESQGLVSNI INNIISQGGL SGVYNQGLGS VLPPSLQNAL KENDLGTLLS PRGLHDFWQK GYFNFLSNGY VFVNNSSFSN ATGGSLNFVA NKSIIFNGDN TIDFSKYQGA LIFASNDVSN INITTLNATN GLSLNAGLNN VSVQKGEICV NLANCPTTKN SSSTNSSVTP TNESLSVRAN NFTFLGAIAS NGAIDLSQVK NNSVIDTLNL NENAALQANN LTITNAFNNA SNSTANINGN FTLNQQATLS TNASGLNVMG NFNSYGDLVF NLSHSVSHAI INAQGSATIM ANNNNPLIQF NTSSKEVGTY TLIDSAKAIY YGYNNQITGG SSLDNYLKLY TLIDINGKHM VMTDNGLTYN GQAVSVKDGG LVVGFKDSQN QYIYTSILYN KVKIAVSNDP INNLQAPTLK QYIAQIQGTQ GVDSIDQAGG SQAINWLNKI FETKGSPLFA PYYLESHSTK DLTTIAGDIA NTLEVIANPN FKNDATNILQ INTYTQQMSR LAKLSDTSTF ASADFHERLE ALKNKRFADA IPNAMDVILK YSQRNRVKNN VWATGVGGAS FINGGTGTLY GINVGYDRFI KGVIVGGYAA YGYSGFHANI TQSGSSNVNM GVYSRAFIKR SELTMSLNET WGYNKTFINS YDPLLSIINQ SYKYDTWTTD AKINYGYDFM FKDKSVIFKP QIGLAYYYIG LSGLRGIMDD PIYNQFRANA DPNKKSVLTI NFALESRHYF NKNSYYFVIA DVGRDLFINS MGDKMVRFIG NNTLSYRDGG RYNTFASIIT GGEIRLFKTF YVNAGIGARF GLDYKDINIT GNIGMRYAF // ID O25065_HELPY Unreviewed; 290 AA. AC O25065; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07362.1}; GN OrderedLocusNames=HP_0292 {ECO:0000313|EMBL:AAD07362.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07362.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07362.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07362.1; -; Genomic_DNA. DR PIR; D64556; D64556. DR RefSeq; NP_207090.1; NC_000915.1. DR RefSeq; WP_000461887.1; NC_018939.1. DR ProteinModelPortal; O25065; -. DR STRING; 85962.HP0292; -. DR PaxDb; O25065; -. DR EnsemblBacteria; AAD07362; AAD07362; HP_0292. DR GeneID; 900174; -. DR KEGG; heo:C694_01475; -. DR KEGG; hpy:HP0292; -. DR PATRIC; 20591811; VBIHelPyl33062_0303. DR eggNOG; ENOG4106VXV; Bacteria. DR eggNOG; COG4866; LUCA. DR KO; K01163; -. DR OMA; YNRDRSD; -. DR OrthoDB; EOG60CWKQ; -. DR BioCyc; HPY:HP0292-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.630.30; -; 2. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR024320; LPG_synthase_C. DR InterPro; IPR016732; UCP018688. DR Pfam; PF09924; DUF2156; 1. DR PIRSF; PIRSF018688; UCP018688; 1. DR SUPFAM; SSF55729; SSF55729; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 26 284 DUF2156. {ECO:0000259|Pfam:PF09924}. SQ SEQUENCE 290 AA; 33699 MW; 6C70F96CF2CF25C6 CRC64; MFEKITLAHK DLFSRFLSAQ KIVLSDVSFT NCFLWQHARL IQVAVIRDCL VIQTTYENQK PFYFYPIGKN AFECVKELLK LEKNLRFHSL TLEQKDDLKD NFVGVFDFTY NRDRSDYVYS IEELIALKGK KYHKKKNHLN QFLTNHANFV YEKISPQNKK EVLEASQAWF LESQTDDIGL INENKGIQSV LENYESLDVK GGLIRVNGEI ASFSFGEVLN EESALIHIEK ARTDIAGAYQ IINQQLLLNE FSHLTYANRE EDLGLEGLRR SKMSYNPVFL IDKYEAVAKN // ID O25783_HELPY Unreviewed; 217 AA. AC O25783; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 107. DE SubName: Full=Glutamine ABC transporter, permease protein (GlnP) {ECO:0000313|EMBL:AAD08215.1}; GN OrderedLocusNames=HP_1169 {ECO:0000313|EMBL:AAD08215.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08215.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08215.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032, CC ECO:0000256|SAAS:SAAS00561696}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08215.1; -; Genomic_DNA. DR PIR; A64666; A64666. DR RefSeq; NP_207960.1; NC_000915.1. DR RefSeq; WP_001162494.1; NC_018939.1. DR ProteinModelPortal; O25783; -. DR STRING; 85962.HP1169; -. DR PaxDb; O25783; -. DR EnsemblBacteria; AAD08215; AAD08215; HP_1169. DR GeneID; 899929; -. DR KEGG; heo:C694_06040; -. DR KEGG; hpy:HP1169; -. DR PATRIC; 20593691; VBIHelPyl33062_1224. DR eggNOG; ENOG41086BM; Bacteria. DR eggNOG; COG0765; LUCA. DR KO; K02029; -. DR OMA; FEAIRHV; -. DR OrthoDB; EOG6MM1R5; -. DR BioCyc; HPY:HP1169-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR010065; AA_ABC_transptr_permease_3TM. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR01726; HEQRo_perm_3TM; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00450258}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450258, ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450217}. FT TRANSMEM 23 46 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 67 96 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 130 153 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 160 181 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 187 208 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 19 205 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 217 AA; 24258 MW; 89C9B73B8E0146D9 CRC64; MALDWDFMFH SIPAFFKGLE LTLYISFFGI LLSLLVGFLC AIVLYFKTRF LSPVVYIYGE IARNTPLLIQ LFFLYYGLNE IGLSALECAI LALGFLGGGY MSQSFLLGFK SLASIQRESA LSLGFSPLKM MYYIILPQSL SVSMPSIGAN VIFLLKETSV VGAIALTDIM FVAKDFIGIY YKTTESLLML SLTYLIALLP LSVLFVILER FFKKKVA // ID O25153_HELPY Unreviewed; 803 AA. AC O25153; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 117. DE SubName: Full=Histidine kinase (CheA) {ECO:0000313|EMBL:AAD07457.1}; GN OrderedLocusNames=HP_0392 {ECO:0000313|EMBL:AAD07457.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07457.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07457.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC P71403:cheY; NbExp=3; IntAct=EBI-6410665, EBI-6409045; CC O25152:HP_0391; NbExp=3; IntAct=EBI-6410665, EBI-7496390; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07457.1; -; Genomic_DNA. DR PIR; H64568; H64568. DR RefSeq; NP_207190.1; NC_000915.1. DR RefSeq; WP_000342347.1; NC_018939.1. DR ProteinModelPortal; O25153; -. DR DIP; DIP-3162N; -. DR IntAct; O25153; 5. DR MINT; MINT-160605; -. DR STRING; 85962.HP0392; -. DR PaxDb; O25153; -. DR EnsemblBacteria; AAD07457; AAD07457; HP_0392. DR GeneID; 898900; -. DR KEGG; heo:C694_01990; -. DR KEGG; hpy:HP0392; -. DR PATRIC; 20592023; VBIHelPyl33062_0405. DR eggNOG; ENOG4105BZU; Bacteria. DR eggNOG; COG0643; LUCA. DR eggNOG; COG0784; LUCA. DR KO; K03407; -. DR OMA; HEDSGYK; -. DR OrthoDB; EOG62RS8P; -. DR BioCyc; HPY:HP0392-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR Gene3D; 1.10.287.560; -; 1. DR Gene3D; 1.20.120.160; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR004105; CheA-like_dim. DR InterPro; IPR002545; CheW. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR InterPro; IPR008207; Sig_transdc_His_kin_Hpt_dom. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF01584; CheW; 1. DR Pfam; PF02895; H-kinase_dim; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF01627; Hpt; 1. DR Pfam; PF00072; Response_reg; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00260; CheW; 1. DR SMART; SM01231; H-kinase_dim; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00073; HPT; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF47226; SSF47226; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF50341; SSF50341; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50851; CHEW; 1. DR PROSITE; PS50109; HIS_KIN; 1. DR PROSITE; PS50894; HPT; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Kinase {ECO:0000313|EMBL:AAD07457.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07457.1}. FT DOMAIN 1 104 HPt. {ECO:0000259|PROSITE:PS50894}. FT DOMAIN 270 517 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. FT DOMAIN 519 653 CheW-like. {ECO:0000259|PROSITE:PS50851}. FT DOMAIN 678 796 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. FT COILED 147 174 {ECO:0000256|SAM:Coils}. FT COILED 186 220 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 803 AA; 89759 MW; B6D9B0FC82B54E27 CRC64; MDDLQEIMED FLIEAFEMNE QLDQDLVELE HNPEDLDLLN RIFRVAHTIK GSSSFLNLNI LTHLTHNMED VLNRARKGEI KITPDIMDVV LRSIDLMKTL LVTIRDTGSD TNNGKENEIE EAVKQLQAIT SQNLESAKER TTEAPQKENK EETKEEAKEE NKENKAKAPT AENTSSDNPL ADEPDLDYAN MSAEEVEAEI ERLLNKRQEA DKERRAQKKQ EAKPKQEVTP TKETPKAPKT ETKAKAKADT EENKAPSIGV EQTVRVDVRR LDHLMNLIGE LVLGKNRLIR IYSDVEERYD GEKFLEELNQ VVSSISAVTT DLQLAVMKTR MQPVGKVFNK FPRMVRDLSR ELGKSIELII EGEETELDKS IVEEIGDPLI HIIRNSCDHG IEPLEERRKL NKPETGKVQL SAYNEGNHIV IKISDDGKGL DPVMLKEKAI EKGVISERDA EGMSDREAFN LIFKPGFSTA KVVSNVSGRG VGMDVVKTNI EKLNGIIEID SEVGVGTTQK LKIPLTLAII QALLVGVQEE YYAIPLSSVL ETVRISQDEI YTVDGKSVLR LRDEVLSLVR LSDIFKVDAI LESNSDVYVV IIGLADQKIG VIVDYLIGQE EVVIKSLGYY LKNTRGIAGA TVRGDGKITL IVDVGAMMDM AKSIKVNITT LMNESENTKS KNSPSDYIVL AIDDSSTDRA IIRKCLKPLG ITLLEATNGL EGLEMLKNGD KIPDAILVDI EMPKMDGYTF ASEVRKYNKF KNLPLIAVTS RVTKTDRMRG VESGMTEYIT KPYSGEYLTT VVKRSIKLEG DQS // ID O25175_HELPY Unreviewed; 389 AA. AC O25175; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=Type 1 capsular polysaccharide biosynthesis protein J (CapJ) {ECO:0000313|EMBL:AAD07485.1}; GN OrderedLocusNames=HP_0421 {ECO:0000313|EMBL:AAD07485.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07485.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07485.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3QHP} RP X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 201-366. RX PubMed=21557320; DOI=10.1002/prot.23038; RA Lee S.J., Lee B.I., Suh S.W.; RT "Crystal structure of the catalytic domain of cholesterol-alpha- RT glucosyltransferase from Helicobacter pylori."; RL Proteins 79:2321-2326(2011). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07485.1; -; Genomic_DNA. DR PIR; E64572; E64572. DR RefSeq; NP_207219.1; NC_000915.1. DR RefSeq; WP_000237280.1; NC_018939.1. DR PDB; 3QHP; X-ray; 1.50 A; A/B=201-366. DR PDBsum; 3QHP; -. DR ProteinModelPortal; O25175; -. DR DIP; DIP-3565N; -. DR IntAct; O25175; 2. DR MINT; MINT-162663; -. DR STRING; 85962.HP0421; -. DR CAZy; GT4; Glycosyltransferase Family 4. DR PaxDb; O25175; -. DR EnsemblBacteria; AAD07485; AAD07485; HP_0421. DR GeneID; 900074; -. DR KEGG; heo:C694_02145; -. DR KEGG; hpy:HP0421; -. DR PATRIC; 20592093; VBIHelPyl33062_0436. DR eggNOG; ENOG4105BZF; Bacteria. DR eggNOG; COG0438; LUCA. DR OMA; HRSENLR; -. DR OrthoDB; EOG6N945M; -. DR BioCyc; HPY:HP0421-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:UniProtKB-KW. DR InterPro; IPR001296; Glyco_trans_1. DR InterPro; IPR028098; Glyco_trans_4-like_N. DR Pfam; PF13439; Glyco_transf_4; 1. DR Pfam; PF00534; Glycos_transf_1; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3QHP}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 15 186 Glyco_trans_4-like_N. FT {ECO:0000259|Pfam:PF13439}. FT DOMAIN 191 350 Glycos_transf_1. FT {ECO:0000259|Pfam:PF00534}. SQ SEQUENCE 389 AA; 44965 MW; FEA3AA0ED1F8F72D CRC64; MVIVLVVDSF KDTSNGTSMT AFRFFEALKK RGHVMRVVAP HVDNLGSEEE GYYNLKERYI PLVTEISHKQ HILFAKPDEK ILRKAFKGAD MIHTYLPFLL EKTAVKIARE MQVPYIGSFH LQPEHISYNM KLGWFSWFNM MLFSWFKSSH YRYIHHIHCP SKFIVEELEK YNYGGKKYAI SNGFDPMFRF EHPQKSLFDT TPFKIAMVGR YSNEKNQSVL IKAVALSKYK QDIVLLLKGK GPDEKKIKLL AQKLGVKAEF GFVNSNELLE ILKTCTLYVH AANVESEAIA CLEAISVGIV PVIANSPLSA TRQFALDERS LFEPNNAKDL SAKIDWWLEN KLERERMQNE YAKSALNYTL ENSVIQIEKV YEEAIRDFKN NPHLFKTLS // ID O25630_HELPY Unreviewed; 100 AA. AC O25630; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 72. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08026.1}; GN OrderedLocusNames=HP_0980 {ECO:0000313|EMBL:AAD08026.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08026.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08026.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08026.1; -; Genomic_DNA. DR PIR; D64642; D64642. DR RefSeq; NP_207771.1; NC_000915.1. DR RefSeq; WP_001863015.1; NC_018939.1. DR ProteinModelPortal; O25630; -. DR STRING; 85962.HP0980; -. DR PaxDb; O25630; -. DR EnsemblBacteria; AAD08026; AAD08026; HP_0980. DR GeneID; 899512; -. DR KEGG; heo:C694_05050; -. DR KEGG; hpy:HP0980; -. DR PATRIC; 20593277; VBIHelPyl33062_1020. DR eggNOG; COG0750; LUCA. DR KO; K11749; -. DR OMA; VQKNPFQ; -. DR OrthoDB; EOG66F07W; -. DR BioCyc; HPY:HP0980-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR InterPro; IPR008915; Peptidase_M50. DR Pfam; PF02163; Peptidase_M50; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 6 99 Peptidase_M50. FT {ECO:0000259|Pfam:PF02163}. SQ SEQUENCE 100 AA; 11410 MW; 70C5E940BCDF7650 CRC64; MMFTVAVLML AFLIFVHELG HFTIARICGV KVEVFSIGFG KKLCFFKLFG TQFALSLIPL GGYVKLKGMD KEENEENKTH QANDSYVQKN PFQKLWILFG // ID O25856_HELPY Unreviewed; 844 AA. AC O25856; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 108. DE SubName: Full=NADH-ubiquinone oxidoreductase, NQO3 subunit (NQO3) {ECO:0000313|EMBL:AAD08310.1}; GN OrderedLocusNames=HP_1266 {ECO:0000313|EMBL:AAD08310.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08310.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08310.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08310.1; -; Genomic_DNA. DR PIR; B64678; B64678. DR RefSeq; NP_208058.1; NC_000915.1. DR RefSeq; WP_000632151.1; NC_018939.1. DR ProteinModelPortal; O25856; -. DR DIP; DIP-3363N; -. DR IntAct; O25856; 3. DR MINT; MINT-165379; -. DR STRING; 85962.HP1266; -. DR PaxDb; O25856; -. DR EnsemblBacteria; AAD08310; AAD08310; HP_1266. DR GeneID; 900184; -. DR KEGG; heo:C694_06545; -. DR KEGG; hpy:HP1266; -. DR PATRIC; 20593909; VBIHelPyl33062_1325. DR eggNOG; ENOG4108IEH; Bacteria. DR eggNOG; COG1034; LUCA. DR KO; K00336; -. DR OMA; CIMCERC; -. DR OrthoDB; EOG60918Z; -. DR BioCyc; HPY:HP1266-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR001041; 2Fe-2S_ferredoxin-type. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR006963; Mopterin_OxRdtase_4Fe-4S_dom. DR InterPro; IPR019574; NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd. DR Pfam; PF10588; NADH-G_4Fe-4S_3; 1. DR SMART; SM00926; Molybdop_Fe4S4; 1. DR SMART; SM00929; NADH-G_4Fe-4S_3; 1. DR SUPFAM; SSF54292; SSF54292; 1. DR PROSITE; PS51085; 2FE2S_FER_2; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. DR PROSITE; PS51669; 4FE4S_MOW_BIS_MGD; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Ubiquinone {ECO:0000313|EMBL:AAD08310.1}. FT DOMAIN 1 76 2Fe-2S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51085}. FT DOMAIN 134 163 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 193 223 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 232 291 4Fe-4S Mo/W bis-MGD-type. FT {ECO:0000259|PROSITE:PS51669}. FT COILED 450 488 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 844 AA; 94230 MW; 69855C08C277F647 CRC64; MITMNINGKT IECQEGQSVL EAARSAGIYI PTICYLSGCS PTVACKMCMV EMDGKRVYSC NTKAKNNATI LTNTPTLMDE RKSIMQTYDV NHPLECGVCD KSGECELQDM THLTGVEHQP YAVADDFKAL DFWAKALYDP NLCIMCERCV TTCKDNVGEN NLKATKADLH APDKFKDSMS KDAFSVWSRK QKGIISFVGS VPCYDCGECI AVCPVGALSY KDFAYTANAW ELKKIHSTCS HCSAGCLISY DVRHFDTLGE ESKIFRVLND FYHNPICGAG RFAFDVSSSP KGSANLKEAQ NALKECEAVR IGGDITNEEA FLIERLRKEL DFKIYNQEAY RFQQFLKVLG EIKRPSVEEI KTSHLVVTIG SSIKTENPLV RYAINNALKL NKASLIAMHP IKDNALANLC RSSFCITHEV GAEEILLGML LKMLNIESAA LKSLEDSKQN IVDEAALKAL EEERKKALEQ AEQGCSIGEN KAENQEENKT EATTPKEENQ EENKTEVKEE KIEVPTKTTY LLLEEAGINL ETYEKILALL QKSNNTLLVV GEEIYSHKQA HNIAKMLRLL AQKSAIKLIL IPPSANALGI ASICQLSEEI FEHEKIVGIR AQGDFTINSD DRVFGKDAAS KVDFILPSLN QLEGTITNIE GRVLPLKPAL RFEGYDLSDI MQGFGFVEEN LIECTHKLPT EAGFKAIEFD YLTNYFANDR VNHRGYLLGT SHFEKSAKEC ETIECEPIKP LKEKIAFNAY LKYPETQFNN ATNKSENLQL KAGVYVSKAF LKKLNKEVGQ NITLSKEEEE LTGVLYLDES LDQEVFVISP SLLKNHSGFF REGVFDSVDL KEQA // ID O25652_HELPY Unreviewed; 177 AA. AC O25652; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 72. DE SubName: Full=Conjugal transfer protein (TraG) {ECO:0000313|EMBL:AAD08052.1}; GN OrderedLocusNames=HP_1006 {ECO:0000313|EMBL:AAD08052.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08052.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08052.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08052.1; -; Genomic_DNA. DR PIR; F64645; F64645. DR RefSeq; NP_207797.1; NC_000915.1. DR RefSeq; WP_000254056.1; NC_000915.1. DR ProteinModelPortal; O25652; -. DR STRING; 85962.HP1006; -. DR PaxDb; O25652; -. DR EnsemblBacteria; AAD08052; AAD08052; HP_1006. DR GeneID; 899540; -. DR KEGG; heo:C694_05195; -. DR KEGG; hpy:HP1006; -. DR PATRIC; 20593339; VBIHelPyl33062_1051. DR eggNOG; COG3505; LUCA. DR KO; K03205; -. DR OrthoDB; EOG6W19DF; -. DR BioCyc; HPY:HP1006-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0009291; P:unidirectional conjugation; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003688; TraG/VirD4. DR Pfam; PF02534; T4SS-DNA_transf; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 177 AA; 20442 MW; 9166348AD5146D03 CRC64; MVSLKESKKF EERVYLFLDE FVRFGKLPFL LEMPALSRSY GVVLIFITQS NALIEKYYGR EDARIVNSTV AYKIIFKMDD LEYAKQVSEE VGKMTRKTRS HSTEKGQLIT GGTSSIGKEA WDLLSAQDIM NIDKDEVIVL VSGHKAKPLK LKANYYFKNK ELLSRINWEV KPNEEVF // ID O26014_HELPY Unreviewed; 844 AA. AC O26014; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 98. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08530.1}; GN OrderedLocusNames=HP_1479 {ECO:0000313|EMBL:AAD08530.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08530.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08530.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08530.1; -; Genomic_DNA. DR PIR; G64704; G64704. DR RefSeq; NP_208270.1; NC_000915.1. DR RefSeq; WP_000931070.1; NC_018939.1. DR ProteinModelPortal; O26014; -. DR DIP; DIP-3366N; -. DR IntAct; O26014; 3. DR MINT; MINT-188183; -. DR STRING; 85962.HP1479; -. DR PaxDb; O26014; -. DR EnsemblBacteria; AAD08530; AAD08530; HP_1479. DR GeneID; 899813; -. DR KEGG; heo:C694_07660; -. DR KEGG; hpy:HP1479; -. DR PATRIC; 20594369; VBIHelPyl33062_1553. DR eggNOG; ENOG4105K6Z; Bacteria. DR eggNOG; COG0457; LUCA. DR OMA; FYYAPFK; -. DR OrthoDB; EOG622PJW; -. DR BioCyc; HPY:HP1479-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 5. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR SMART; SM00028; TPR; 7. DR SUPFAM; SSF48452; SSF48452; 4. DR PROSITE; PS50005; TPR; 7. DR PROSITE; PS50293; TPR_REGION; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 83 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 143 176 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. FT DOMAIN 175 208 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. FT DOMAIN 308 375 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. FT DOMAIN 468 535 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. FT DOMAIN 716 818 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 844 AA; 96654 MW; C1C9CE15EFA4B4A4 CRC64; MLNEEQNSLE EKGGENKNEK ETPLKGIHSK IPSLKQALEQ TISKIKSSKE FFKQILHNKK KLYIALGALL LLIVLIVALS LLLGHKKENK QTSLQTNTIA TNNETPNNTN NANNTEAERQ IENLDLSDLI GKDSLKRNDE NQVDAIMKKA SLLYEQGQKD EALHLFDKAA SFSQGIASHN LGVIKFKEKD FNGALDLFDS SIASKENASV SAIDALVSAY HLQDEDLYYH YLKIARDTLY KDYKKSFYSY AYALKSYYAG EYFEALSPLM HPNSNAFLKP NTRLASKLFL MFKDETNAYE QLQKSANAQD ELALGLLQAR LGHYKQALEH LQHYLHNYPK DLNALMALEL VSLKKGDTLK ASEALKLASH TKEDTLLANS FYPIKPTINP VFLDKERAKE RFWNTQYFEG KRDFIYRLLF YYAPFKVLDS KETLGVIEEG LFLLDSDAQK DLEGASLAFK RGRLMAIADK NALQGLKALE NKRLKKALSF FDLSLKNSPN NALLHYNTGL IYAQLENYHK AYFHFLRAFH LNSADYLSAV FAILASHFTH EDTTEFLREI TENFYSQDFS SPTQKALLSS LIAYLNYRTN WDMDWLKNAP KKLPFYYALE AAFAKESKDK KLMVQSFGNL KKMLPKDLIS NIFYEIVSYY DASIRHTLSI YTLLDSHKIS WDQTMQGPIL GRHFYTYMGF MVNDLDHQER LLEQKIASLE EGEAPNDWLE NLALVSLFQG QYEKASALYQ NLISGLKDNE THLKILAGLT YIAQNNYDSA ALWLELGKLD DPNNENIRYA LGLLYQRKGD LKSALNHFLA IKTSDFSSPY FDFEIDANLL KERLDQEKEG EFLE // ID O25357_HELPY Unreviewed; 402 AA. AC O25357; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 103. DE SubName: Full=Poly(A) polymerase (PapS) {ECO:0000313|EMBL:AAD07702.1}; GN OrderedLocusNames=HP_0640 {ECO:0000313|EMBL:AAD07702.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07702.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07702.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: A tRNA precursor + 2 CTP + ATP = a tRNA with a CC 3' CCA end + 3 diphosphate. {ECO:0000256|SAAS:SAAS00415332}. CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A) CC polymerase family. {ECO:0000256|RuleBase:RU003953, CC ECO:0000256|SAAS:SAAS00534214}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07702.1; -; Genomic_DNA. DR PIR; H64599; H64599. DR RefSeq; NP_207434.1; NC_000915.1. DR RefSeq; WP_000462295.1; NC_018939.1. DR ProteinModelPortal; O25357; -. DR DIP; DIP-3063N; -. DR IntAct; O25357; 2. DR MINT; MINT-184096; -. DR STRING; 85962.HP0640; -. DR PaxDb; O25357; -. DR EnsemblBacteria; AAD07702; AAD07702; HP_0640. DR GeneID; 899031; -. DR KEGG; heo:C694_03310; -. DR KEGG; hpy:HP0640; -. DR PATRIC; 20592565; VBIHelPyl33062_0671. DR eggNOG; ENOG4105D4J; Bacteria. DR eggNOG; COG0617; LUCA. DR KO; K00970; -. DR OMA; NQTIECV; -. DR OrthoDB; EOG65QWJN; -. DR BioCyc; HPY:HP0640-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR InterPro; IPR002646; PolA_pol_head_dom. DR InterPro; IPR032828; PolyA_RNA-bd. DR Pfam; PF01743; PolyA_pol; 1. DR Pfam; PF12627; PolyA_pol_RNAbd; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|SAAS:SAAS00415369}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00415369}; KW Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00415426}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW RNA-binding {ECO:0000256|RuleBase:RU003953, KW ECO:0000256|SAAS:SAAS00415356}; KW Transferase {ECO:0000256|SAAS:SAAS00415426}. FT DOMAIN 22 145 PolyA_pol. {ECO:0000259|Pfam:PF01743}. FT DOMAIN 173 216 PolyA_pol_RNAbd. FT {ECO:0000259|Pfam:PF12627}. SQ SEQUENCE 402 AA; 46469 MW; 484217BF67020831 CRC64; MFELEEGLKE LFDIYEKSSH ELYLVGGCVR DYLMGITPKD YDLTSNALVN ESKELLLKRH FRVLETGIKH GTITALKNHQ SYEITTFRIE KGHIKHRKPK ELVFSVHLTD DLKRRDFSMN AIAYSPTKGL IDPFKGQNAI ENQMIECVGE ARLRFFEDAL RILRSLRFSA TLGFKIAPNT KEAVFACKDL LKHLSKERLQ SELNKLLMGK NAYEVAKEYQ EILELVIQEK IENLGFLKNA PFNLELRLLG FFKHQKSLES LRYPKKTIVL FSKAKECHKS FLNIHNKTEL KFLLKNYDLE PFNLALDFYA LKNPKHALKI KGLLKEIFDS NEPFKKEHLA LKGGALQSLG YQHQKIGEIL NACLDLVIAN PKNNALEWLI EWVKGHYLPN DTINLSPIGR RN // ID O25750_HELPY Unreviewed; 179 AA. AC O25750; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE SubName: Full=Peptidoglycan associated lipoprotein (Omp18) {ECO:0000313|EMBL:AAD08169.1}; GN OrderedLocusNames=HP_1125 {ECO:0000313|EMBL:AAD08169.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08169.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08169.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ompA family. CC {ECO:0000256|RuleBase:RU003859}. CC -!- SIMILARITY: Contains OmpA-like domain. CC {ECO:0000256|SAAS:SAAS00509386}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08169.1; -; Genomic_DNA. DR PIR; E64660; E64660. DR RefSeq; NP_207916.1; NC_000915.1. DR RefSeq; WP_000831156.1; NC_018939.1. DR ProteinModelPortal; O25750; -. DR STRING; 85962.HP1125; -. DR PaxDb; O25750; -. DR EnsemblBacteria; AAD08169; AAD08169; HP_1125. DR GeneID; 899662; -. DR KEGG; heo:C694_05810; -. DR KEGG; hpy:HP1125; -. DR PATRIC; 20593595; VBIHelPyl33062_1177. DR eggNOG; ENOG4105KCK; Bacteria. DR eggNOG; COG2885; LUCA. DR KO; K03640; -. DR OMA; WANGMEE; -. DR OrthoDB; EOG6PP9QB; -. DR BioCyc; HPY:HP1125-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:InterPro. DR Gene3D; 3.30.1330.60; -; 1. DR InterPro; IPR006664; OMP_bac. DR InterPro; IPR006665; OmpA-like. DR Pfam; PF00691; OmpA; 1. DR PRINTS; PR01021; OMPADOMAIN. DR SUPFAM; SSF103088; SSF103088; 1. DR PROSITE; PS51123; OMPA_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Lipoprotein {ECO:0000313|EMBL:AAD08169.1}; KW Membrane {ECO:0000256|RuleBase:RU003859}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 179 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157923. FT DOMAIN 65 179 OmpA-like. {ECO:0000259|PROSITE:PS51123}. SQ SEQUENCE 179 AA; 19978 MW; 5B5521E284E27B4C CRC64; MKRSSVFSFL VAFLLVAGCS HKMDNKTVAG DVSAKTVQTA PVTTEPAPEK EEPKQEPAPV VEEKPAVESG TIIASIYFDF DKYEIKESDQ ETLDEIVQKA KENHMQVLLE GNTDEFGSSE YNQALGVKRT LSVKNALVIK GVEKDMIKTI SFGETKPKCA QKTRECYKEN RRVDVKLMK // ID O25115_HELPY Unreviewed; 516 AA. AC O25115; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 82. DE SubName: Full=Single-stranded-DNA-specific exonuclease (RecJ) {ECO:0000313|EMBL:AAD07405.1}; GN OrderedLocusNames=HP_0348 {ECO:0000313|EMBL:AAD07405.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07405.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07405.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07405.1; -; Genomic_DNA. DR PIR; D64563; D64563. DR RefSeq; NP_207146.1; NC_000915.1. DR RefSeq; WP_000810700.1; NC_018939.1. DR ProteinModelPortal; O25115; -. DR IntAct; O25115; 1. DR STRING; 85962.HP0348; -. DR PaxDb; O25115; -. DR EnsemblBacteria; AAD07405; AAD07405; HP_0348. DR GeneID; 899213; -. DR KEGG; heo:C694_01765; -. DR KEGG; hpy:HP0348; -. DR PATRIC; 20591929; VBIHelPyl33062_0361. DR eggNOG; ENOG4105C2R; Bacteria. DR eggNOG; COG0608; LUCA. DR KO; K07462; -. DR OMA; HHAPLII; -. DR OrthoDB; EOG63C0P5; -. DR BioCyc; HPY:HP0348-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR InterPro; IPR001667; DDH_dom. DR InterPro; IPR003156; DHHA1_dom. DR InterPro; IPR004610; RecJ. DR Pfam; PF01368; DHH; 1. DR Pfam; PF02272; DHHA1; 1. DR TIGRFAMs; TIGR00644; recJ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Exonuclease {ECO:0000313|EMBL:AAD07405.1}; KW Hydrolase {ECO:0000313|EMBL:AAD07405.1}; KW Nuclease {ECO:0000313|EMBL:AAD07405.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 49 180 DHH. {ECO:0000259|Pfam:PF01368}. FT DOMAIN 339 395 DHHA1. {ECO:0000259|Pfam:PF02272}. SQ SEQUENCE 516 AA; 58353 MW; 3BEDA8C22755E978 CRC64; MKQKLKAQIK ERMASIAYNE KGFPSPFLFK DLKKAALKII EAMRTNTEIL VVGDYDADGV ISSAIMAKFF ESLNYKHVRI AIPNRFMDGY GISKKFLEKH HAPLIITVDN GINAFEAARF CKEKNYTLII TDHHCLHHDE VPDAYAVINP KQPDCDFIQK EVCGALVAFY LCYGIHQLLG KEKSHSSELL CLAGVATIAD MMPLTFFNRF LVSKALYFLQ KESLGAMGFL RQREVFRKRS LKASDISFNI APLINSAGRM QDAKMALDFL SANNSQDGYS LYERLKACNL KRKMIQQQVF EEAFKHAMVG EKIIVAFKDN WHEGVLGIVA SKLVEATQKP SLVFTFKEGV YKGSARSSSN IDLIDALNGV SSLLLGYGGH RQACGLSVEK NNIISLFETL ENFDFKVLPF CKTEPPLTLK LKDIDRELLE IIEMGEPYGQ ENPEPLFQAK NLEVIEEKII KESHQVLRFK DKECVKEAIY FSAERFLKAG EKVSVLFSVE LDECSNEPKM FVKSLL // ID O25990_HELPY Unreviewed; 264 AA. AC O25990; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 97. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08496.1}; GN OrderedLocusNames=HP_1451 {ECO:0000313|EMBL:AAD08496.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08496.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08496.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2PT7} RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 113-264. RX PubMed=17972918; DOI=10.1038/sj.emboj.7601904; RA Hare S., Fischer W., Williams R., Terradot L., Bayliss R., Haas R., RA Waksman G.; RT "Identification, structure and mode of action of a new regulator of RT the Helicobacter pylori HP0525 ATPase."; RL EMBO J. 26:4926-4934(2007). CC -!- INTERACTION: CC Q7BK04:cag-alfa (xeno); NbExp=3; IntAct=EBI-528082, EBI-528063; CC Q6VRM0:HP0525 (xeno); NbExp=3; IntAct=EBI-528082, EBI-7678072; CC O25768:HP_1150; NbExp=3; IntAct=EBI-528082, EBI-7507498; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08496.1; -; Genomic_DNA. DR PIR; C64701; C64701. DR RefSeq; NP_208242.1; NC_000915.1. DR RefSeq; WP_001178843.1; NC_018939.1. DR PDB; 2PT7; X-ray; 2.40 A; G/H=113-264. DR PDBsum; 2PT7; -. DR ProteinModelPortal; O25990; -. DR SMR; O25990; 115-259. DR DIP; DIP-3054N; -. DR IntAct; O25990; 18. DR MINT; MINT-176044; -. DR STRING; 85962.HP1451; -. DR PaxDb; O25990; -. DR EnsemblBacteria; AAD08496; AAD08496; HP_1451. DR GeneID; 899842; -. DR KEGG; heo:C694_07515; -. DR KEGG; hpy:HP1451; -. DR PATRIC; 20594309; VBIHelPyl33062_1523. DR eggNOG; ENOG4108V9G; Bacteria. DR eggNOG; ENOG4111I8Z; LUCA. DR KO; K06346; -. DR OMA; IINLQYE; -. DR OrthoDB; EOG66F08H; -. DR BioCyc; HPY:HP1451-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.30.80; -; 1. DR InterPro; IPR032782; Jag_N. DR Pfam; PF14804; Jag_N; 1. DR SMART; SM01245; Jag_N; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2PT7}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 264 AA; 30137 MW; 1AF80D38A0174EFF CRC64; MQNFIEIKAK TLEEALIQAS IALNCPIINL QYEVIQTPSK GFLSIGKKEA IILAGVKESV KEIKEESVKE TNTKEIHQSA EEKKQKLETE TPQEEIITPK PSKKNPKEES HSGDKLHEIK QELKDLFSHL PYKINKVEVS LYEPGVLLID IDGEDSALLI GEKGYRYKAL SYLLFNWIHP TYGYSIRLEI STFLQNQEKV MDTQLQSVIM TVHEVGKGQM KAPDGVLTYI ALKKLRKAFP NKYVSIKTNL NDEKYIVIND FNNE // ID O25182_HELPY Unreviewed; 296 AA. AC O25182; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE SubName: Full=Protein kinase C-like protein {ECO:0000313|EMBL:AAD07499.1}; GN OrderedLocusNames=HP_0432 {ECO:0000313|EMBL:AAD07499.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07499.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07499.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07499.1; -; Genomic_DNA. DR PIR; H64573; H64573. DR RefSeq; WP_000418129.1; NC_018939.1. DR ProteinModelPortal; O25182; -. DR IntAct; O25182; 1. DR MINT; MINT-175132; -. DR STRING; 85962.HP0432; -. DR PaxDb; O25182; -. DR DNASU; 899240; -. DR EnsemblBacteria; AAD07499; AAD07499; HP_0432. DR KEGG; heo:C694_02195; -. DR PATRIC; 20592123; VBIHelPyl33062_0450. DR eggNOG; ENOG4105EX7; Bacteria. DR eggNOG; COG0515; LUCA. DR OMA; FAIITYE; -. DR OrthoDB; EOG6ND0D5; -. DR BioCyc; HPY:HP0432-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004672; F:protein kinase activity; IEA:InterPro. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR000719; Prot_kinase_dom. DR Pfam; PF00069; Pkinase; 1. DR SMART; SM00220; S_TKc; 1. DR SUPFAM; SSF56112; SSF56112; 1. DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Kinase {ECO:0000313|EMBL:AAD07499.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07499.1}. FT DOMAIN 14 296 Protein kinase. FT {ECO:0000259|PROSITE:PS50011}. SQ SEQUENCE 296 AA; 34001 MW; 07F4A6FEA1E0C5A7 CRC64; MELEEIVDSE RNIHKTIEVL GKGGQGIVYR CLDKDVAIKV VLRDGDFIKD KESLKQYEKS VLNLSFKPIE SHFPMSIPLV TLKEKQGYVM KMAEGYEPLK TFLKKPSILE NEEKDGIFRI NNAIQELCKD NHYMTLSLSY YSQTQGLRSR LKILTHLAKL LFRLQSKGLV YGDLNLNNVF YKDNSAFLID ADNVRYESEK ALCVIFTPNY GALEISQTSK NSDTTNYNTM LSDTFSFAII TYELLNMVHP FDGNKADDSV ENFIELPWIE DRKDDSNRSC GLLPFFLTRD LKNLLA // ID O25069_HELPY Unreviewed; 549 AA. AC O25069; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE SubName: Full=Dipeptide ABC transporter, periplasmic dipeptide-binding protein (DppA) {ECO:0000313|EMBL:AAD07367.1}; GN OrderedLocusNames=HP_0298 {ECO:0000313|EMBL:AAD07367.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07367.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07367.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07367.1; -; Genomic_DNA. DR PIR; B64557; B64557. DR RefSeq; NP_207096.1; NC_000915.1. DR RefSeq; WP_001066780.1; NC_018939.1. DR ProteinModelPortal; O25069; -. DR DIP; DIP-3372N; -. DR IntAct; O25069; 2. DR MINT; MINT-171358; -. DR STRING; 85962.HP0298; -. DR PaxDb; O25069; -. DR EnsemblBacteria; AAD07367; AAD07367; HP_0298. DR GeneID; 900107; -. DR KEGG; heo:C694_01505; -. DR KEGG; hpy:HP0298; -. DR PATRIC; 20591823; VBIHelPyl33062_0309. DR eggNOG; ENOG4105DEF; Bacteria. DR eggNOG; COG0747; LUCA. DR KO; K12368; -. DR OMA; ATRNPKG; -. DR OrthoDB; EOG63C0PB; -. DR BioCyc; HPY:HP0298-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR030678; Peptide/Ni-bd. DR InterPro; IPR000914; SBP_5_dom. DR Pfam; PF00496; SBP_bac_5; 1. DR PIRSF; PIRSF002741; MppA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 90 463 SBP_bac_5. {ECO:0000259|Pfam:PF00496}. SQ SEQUENCE 549 AA; 62468 MW; AFE7C8E44CEB1641 CRC64; MNNVFVKGLF FFLLLFGFFL KASESPNATL NPSKENVSVE EQKRFGGVLV FARGADGSSM DPALVTDGES YVATGNIYDT LVQFRYGTTE VEPALATSWD ISPDGLVYTF HLRKGVYFHQ TKYWNKKVEF SAKDVLFSFE RQMDKAKRYY SPGAKSYKYW EGMGMSHIIK SIEALDDYTI RFTLNGPEAP FLANLGMDFL SILSKDYADY LAQNNKKDEL AKKPIGTGPF KFFLWNKDEK IILLKNQDYW GPKAYLDKVV VRTIPNSSTR ALALRTGEIM LMTGPNLNEV EQLEKVPNIV VDKSAGLLAS WLSLNTQKKY FDNPLVRLAI NHAINADDYI KVLYEGFAQK MVNPFPPTIW GYNYNIKPYE YDLKKAKELL KQAGYPNGFK TTIFTTATRN PKGAVFIQAS LAKIGIDVKI EVYEWGAYLK RTGLGEHEMA FSGWMADIAD PDNFLYTLWS EQAASAIPTQ NHSFYKNKEF SNLLIKAKRV SDQKEREALY LKAQEIIHKD APYVPLAYPY SVVPHLSKVK GYKTTGVSVN RFFKVYLEK // ID O25073_HELPY Unreviewed; 268 AA. AC O25073; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 117. DE SubName: Full=Dipeptide ABC transporter, ATP-binding protein (DppF) {ECO:0000313|EMBL:AAD07371.1}; GN OrderedLocusNames=HP_0302 {ECO:0000313|EMBL:AAD07371.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07371.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07371.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. CC {ECO:0000256|SAAS:SAAS00555009}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07371.1; -; Genomic_DNA. DR PIR; F64557; F64557. DR RefSeq; NP_207100.1; NC_000915.1. DR RefSeq; WP_000770472.1; NC_018939.1. DR ProteinModelPortal; O25073; -. DR IntAct; O25073; 1. DR STRING; 85962.HP0302; -. DR PaxDb; O25073; -. DR EnsemblBacteria; AAD07371; AAD07371; HP_0302. DR GeneID; 900194; -. DR KEGG; heo:C694_01525; -. DR KEGG; hpy:HP0302; -. DR PATRIC; 20591831; VBIHelPyl33062_0313. DR eggNOG; ENOG4108JQ7; Bacteria. DR eggNOG; COG4608; LUCA. DR KO; K12372; -. DR OMA; MEKCALE; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0302-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0015833; P:peptide transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013563; Oligopep_ABC_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF08352; oligo_HPY; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07371.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07371.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transport {ECO:0000256|SAAS:SAAS00554993}. FT DOMAIN 4 253 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 268 AA; 30438 MW; 7B18A097D7EE4795 CRC64; MKLLEIKELK KSYAIDRGLF KPKRVIHALN GISFEVEQNE VLSIVGESGC GKSTTAKILA GIERQDSGAI YFNGKRHLHF SKQDWFDYRK KVQMIFQDPY SSLNPRWKVG EIIAEPLLLN SHFSKKEIKT KVLEIMQKVG LKLEWIDRYP HQFSGGQRQR IGIARALILH PSVVICDEPV SALDVSIQAQ VLNLLLDLQK EMGLTYIFIS HDLGVVEHIS DKIIVMNQGQ IVETGDVDSV ISAPKHPYTQ KLLNAVPHLE KSMQRFAK // ID O25308_HELPY Unreviewed; 977 AA. AC O25308; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07658.1}; GN OrderedLocusNames=HP_0586 {ECO:0000313|EMBL:AAD07658.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07658.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07658.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07658.1; -; Genomic_DNA. DR PIR; B64593; B64593. DR RefSeq; NP_207381.1; NC_000915.1. DR RefSeq; WP_001042337.1; NC_018939.1. DR ProteinModelPortal; O25308; -. DR STRING; 85962.HP0586; -. DR PaxDb; O25308; -. DR EnsemblBacteria; AAD07658; AAD07658; HP_0586. DR GeneID; 900240; -. DR KEGG; heo:C694_03025; -. DR KEGG; hpy:HP0586; -. DR PATRIC; 20592449; VBIHelPyl33062_0613. DR eggNOG; ENOG4108S5E; Bacteria. DR eggNOG; ENOG4111GVG; LUCA. DR OMA; ISAKQRY; -. DR OrthoDB; EOG6Z6FNQ; -. DR BioCyc; HPY:HP0586-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR025263; DUF3971. DR Pfam; PF13116; DUF3971; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 211 462 DUF3971. {ECO:0000259|Pfam:PF13116}. SQ SEQUENCE 977 AA; 110870 MW; 1D06F82C720C0481 CRC64; MNKRKHVSKK VFNVIILFVA VFTLLVVIHK TLSNGIHIQN LKIGKLGISE LYLKLNNKLS LEVERIDLSS FFHQKPTKKR LEVSDLIKNI RYGIWAVSYF EKLKVKEIIL DDKNKANIFF DGNKYELEFP GVKGEFSLED DKNIKLKIIN LLFKDIKVQV DGNAHYSPKA RKMAFNLIVK PLIEPSAAIY LQGLTDLKTI ELKINTSVMK SLAFLKPLFQ RQSQKNLKTW IFDKIQFASF KIDNASIKAN FTPSEFVPSL LKNSVIKATL MKPSVVFNDG LSPIKMDKTE LVFKNKQLLI QPQKITYETM ELTGSYATFS NLLEAPKLEI FLKTTPNYYG DSIKDLLSAY KVVLPLDKIS TPSSADLKLT LQFLKNTAPL FSVQGNVNLQ EGTLSLYNIP LYTQNANISL DITQEYQYIY IETTHTRYEN MLDLDAKIAL DLNKKTLSLD SLVHKIRFNT NNNINMRSYG LNNDQDNPQP TKFSLDLKSL HSVIQEGENS EVFRRKIIDT IKAQSEDKFT KDVFYATGDT LKNLSLNFDF SNPNHMQWSV PQLLLEGEFK DNAYVFRIKD LKKIKPYSPI MKYFALEDGS LEVSTSDFVN IDFFAKDLKI TLPIYHSNGS QFNSLSLFGS INKDEISVYT PSKSISIKVK GDQKDITLNN IDLSIDDFLD SKMPAIAGLF SKERKEKPSS KEIQDEDIFI SAKQRYEKAH KIIPISTRIH AKDVVLIYKK MPFPLENLDI VAQDDRVKID GNYKNAMIMA DLVHGALYLK AHNFSGDYIN TILQKDFVEG GLFTLIGALE DQVFNGELKF QNTSLKNFAL MQNMINLINT IPSLIVFRNP HLGANGYQIK KGSVVFGITK EYLGLEKIDL IGKTLDIAGN GIIELDKNKL DLNLEVSTIK ALSNVLNKIP IVGYLVLGKG GKITTNVNVK GTLDKPKTQV TLASDIIQAP FKILRRIFTP IDIIVDEVKK NIDSKRK // ID O26035_HELPY Unreviewed; 344 AA. AC O26035; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 95. DE SubName: Full=Riboflavin biosynthesis protein (RibG) {ECO:0000313|EMBL:AAD08541.1}; GN OrderedLocusNames=HP_1505 {ECO:0000313|EMBL:AAD08541.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08541.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08541.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08541.1; -; Genomic_DNA. DR PIR; A64708; A64708. DR RefSeq; NP_208296.1; NC_000915.1. DR RefSeq; WP_001242020.1; NC_018939.1. DR ProteinModelPortal; O26035; -. DR STRING; 85962.HP1505; -. DR PaxDb; O26035; -. DR DNASU; 899786; -. DR EnsemblBacteria; AAD08541; AAD08541; HP_1505. DR GeneID; 899786; -. DR KEGG; heo:C694_07795; -. DR KEGG; hpy:HP1505; -. DR PATRIC; 20594425; VBIHelPyl33062_1581. DR eggNOG; ENOG4105D1W; Bacteria. DR eggNOG; COG0117; LUCA. DR eggNOG; COG1985; LUCA. DR KO; K11752; -. DR OMA; LLPFRIM; -. DR OrthoDB; EOG66F07R; -. DR BioCyc; HPY:HP1505-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008703; F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.430.10; -; 1. DR InterPro; IPR002125; CMP_dCMP_Zn-bd. DR InterPro; IPR016193; Cytidine_deaminase-like. DR InterPro; IPR024072; DHFR-like_dom. DR InterPro; IPR002734; RibDG_C. DR Pfam; PF00383; dCMP_cyt_deam_1; 1. DR Pfam; PF01872; RibD_C; 1. DR SUPFAM; SSF53597; SSF53597; 1. DR SUPFAM; SSF53927; SSF53927; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 130 CMP/dCMP-type deaminase. FT {ECO:0000259|Pfam:PF00383}. FT DOMAIN 192 268 RibD_C. {ECO:0000259|Pfam:PF01872}. SQ SEQUENCE 344 AA; 39025 MW; 90AECC4D1048191D CRC64; MRLYESLLEM CLNKAWEHQT LALENPSVAC MVLDKNHEIL SLETHKKAKT PHAEVLAAQS ALKILRPSLK NDLEKLEDPK TLSDFLKTHH DNAFTDCVFL ITLEPCNSYG KTPACSELLE ILKPKRVVIA TEENEAKKGG LARLQKARIE TIICHNLENK AKDLLLPFRV MEQKGRFNLF KLALRMNGDY HHGKITGQKS VIFTHNQRAI CDTLIVSGKT IRTDNPLLDA RFCDSFYQNK NPNIAILSKR SIDPNSKVFS APNRLVNTFH DPKDLPLEKG FNFIEGGWEL FESLRDKIDA LLLHSHASMI GEAFKALALK TPFKGRLLHA QILENEALLW IENS // ID O26017_HELPY Unreviewed; 246 AA. AC O26017; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 112. DE RecName: Full=Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; DE EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813}; DE EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813}; DE AltName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; DE AltName: Full=Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; GN Name=ubiE {ECO:0000256|HAMAP-Rule:MF_01813}; GN OrderedLocusNames=HP_1483 {ECO:0000313|EMBL:AAD08518.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08518.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08518.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Methyltransferase required for the conversion of CC demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion CC of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- CC polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). CC {ECO:0000256|HAMAP-Rule:MF_01813}. CC -!- CATALYTIC ACTIVITY: A demethylmenaquinol + S-adenosyl-L-methionine CC = a menaquinol + S-adenosyl-L-homocysteine. {ECO:0000256|HAMAP- CC Rule:MF_01813}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + 2-methoxy-6-all- CC trans-polyprenyl-1,4-benzoquinol = S-adenosyl-L-homocysteine + 6- CC methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol. CC {ECO:0000256|HAMAP-Rule:MF_01813}. CC -!- PATHWAY: Cofactor biosynthesis; ubiquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_01813}. CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis; CC menaquinol from 1,4-dihydroxy-2-naphthoate: step 2/2. CC {ECO:0000256|HAMAP-Rule:MF_01813}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. MenG/UbiE family. CC {ECO:0000256|HAMAP-Rule:MF_01813, ECO:0000256|SAAS:SAAS00572359}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08518.1; -; Genomic_DNA. DR PIR; C64705; C64705. DR RefSeq; NP_208274.1; NC_000915.1. DR RefSeq; WP_000711694.1; NC_018939.1. DR ProteinModelPortal; O26017; -. DR STRING; 85962.HP1483; -. DR PaxDb; O26017; -. DR EnsemblBacteria; AAD08518; AAD08518; HP_1483. DR GeneID; 899809; -. DR KEGG; heo:C694_07680; -. DR KEGG; hpy:HP1483; -. DR PATRIC; 20594377; VBIHelPyl33062_1557. DR eggNOG; ENOG4105DDZ; Bacteria. DR eggNOG; COG2226; LUCA. DR KO; K03183; -. DR OMA; QKSALNC; -. DR OrthoDB; EOG6M6JSB; -. DR BioCyc; HPY:HP1483-MONOMER; -. DR UniPathway; UPA00079; UER00169. DR UniPathway; UPA00232; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0102005; F:2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity; IEA:UniProtKB-EC. DR GO; GO:0008425; F:2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009060; P:aerobic respiration; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006744; P:ubiquinone biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_01813; MenG_UbiE_methyltr; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR004033; UbiE/COQ5_MeTrFase. DR InterPro; IPR023576; UbiE/COQ5_MeTrFase_CS. DR Pfam; PF01209; Ubie_methyltran; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR01934; MenG_MenH_UbiE; 1. DR PROSITE; PS51608; SAM_MT_UBIE; 1. DR PROSITE; PS01183; UBIE_1; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_01813}; KW Methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813, KW ECO:0000256|SAAS:SAAS00463410}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_01813, KW ECO:0000256|SAAS:SAAS00463460}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01813, KW ECO:0000256|SAAS:SAAS00463410}; KW Ubiquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_01813}. FT COILED 96 123 {ECO:0000256|SAM:Coils}. FT BINDING 65 65 S-adenosyl-L-methionine. FT {ECO:0000256|HAMAP-Rule:MF_01813}. FT BINDING 90 90 S-adenosyl-L-methionine. FT {ECO:0000256|HAMAP-Rule:MF_01813}. SQ SEQUENCE 246 AA; 27871 MW; 6B84E5C02D1BB8E3 CRC64; MKKEKHLKQE KIINMFDDIA SSYDQANRLM SFGLDVKWRE RACEHAFLFL ENKKALRLVD VACGTGDMLV AWQKSALNCG IEFKECLGID PSNNMLELAI KKCEELENKA SFIQAQAKDL KGVENNSVDI LSIAYGLRNV VERQEALKEF FRVLKPRGVL VILEFLKKDN PTWLDKISGF YTNKVLPLVG GAISKNYGAY SYLPQSIEGF LSLEGLKHEL RNAGFEILRT EDSIAQISTT MLVKKN // ID O25176_HELPY Unreviewed; 615 AA. AC O25176; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 104. DE RecName: Full=Arginine decarboxylase {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226}; DE EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226}; GN OrderedLocusNames=HP_0422 {ECO:0000313|EMBL:AAD07486.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07486.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07486.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: L-arginine = agmatine + CO(2). CC {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212228}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|RuleBase:RU003740}; CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|PIRSR:PIRSR001336-50}; CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II CC family. {ECO:0000256|RuleBase:RU003737}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07486.1; -; Genomic_DNA. DR PIR; F64572; F64572. DR RefSeq; NP_207220.1; NC_000915.1. DR RefSeq; WP_001158562.1; NC_018939.1. DR ProteinModelPortal; O25176; -. DR DIP; DIP-3228N; -. DR IntAct; O25176; 5. DR MINT; MINT-161428; -. DR STRING; 85962.HP0422; -. DR PaxDb; O25176; -. DR EnsemblBacteria; AAD07486; AAD07486; HP_0422. DR GeneID; 898896; -. DR KEGG; heo:C694_02150; -. DR KEGG; hpy:HP0422; -. DR PATRIC; 20592095; VBIHelPyl33062_0437. DR eggNOG; ENOG4105DP5; Bacteria. DR eggNOG; COG1166; LUCA. DR KO; K01585; -. DR OMA; DQLFPIM; -. DR OrthoDB; EOG676Z0R; -. DR BioCyc; HPY:HP0422-MONOMER; -. DR BRENDA; 4.1.1.19; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008792; F:arginine decarboxylase activity; IEA:UniProtKB-EC. DR GO; GO:0006527; P:arginine catabolic process; IEA:InterPro. DR GO; GO:0008295; P:spermidine biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 2.40.37.10; -; 2. DR Gene3D; 3.20.20.10; -; 1. DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C. DR InterPro; IPR002985; Arg_decrbxlase. DR InterPro; IPR022643; De-COase2_C. DR InterPro; IPR022644; De-COase2_N. DR InterPro; IPR000183; Orn/DAP/Arg_de-COase. DR InterPro; IPR029066; PLP-binding_barrel. DR PANTHER; PTHR11482:SF36; PTHR11482:SF36; 2. DR Pfam; PF02784; Orn_Arg_deC_N; 1. DR Pfam; PF00278; Orn_DAP_Arg_deC; 1. DR PIRSF; PIRSF001336; Arg_decrbxlase; 1. DR PRINTS; PR01180; ARGDCRBXLASE. DR PRINTS; PR01179; ODADCRBXLASE. DR SUPFAM; SSF50621; SSF50621; 1. DR SUPFAM; SSF51419; SSF51419; 1. DR TIGRFAMs; TIGR01273; speA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Decarboxylase {ECO:0000256|RuleBase:RU003740, KW ECO:0000256|SAAS:SAAS00467027}; KW Lyase {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00467027}; KW Magnesium {ECO:0000256|SAAS:SAAS00417966}; KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR001336-50, KW ECO:0000256|SAAS:SAAS00418093}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Spermidine biosynthesis {ECO:0000256|RuleBase:RU003740, KW ECO:0000256|SAAS:SAAS00417951}. FT DOMAIN 78 332 Orn_Arg_deC_N. FT {ECO:0000259|Pfam:PF02784}. FT DOMAIN 437 539 Orn_DAP_Arg_deC. FT {ECO:0000259|Pfam:PF00278}. FT MOD_RES 89 89 N6-(pyridoxal phosphate)lysine. FT {ECO:0000256|PIRSR:PIRSR001336-50}. SQ SEQUENCE 615 AA; 70329 MW; 7230B0A34822408A CRC64; MQEVHDYGIK FWSNNEFKIE KGLVKVCHGK NPSLLEIVQS VRDKGYRGPL LVRFPHLVQK QIKSLFDAFS SAIKEYQYSG AFKAVFPLKV NQMPSFVFPL VQGAKGLNYG LEAGSKSELI IAMSYTNPKA PITVNGFKDK EMIELGFIAK SMQHEITLTI EGLNELKTII AVAKQNEFLA CPKIGIRIRL HSTGTGVWAK SGGINSKFGL SSTEVLEAMR LLEENDLLEH FHMIHFHIGS QISDISPLKK ALREAGNLYA ELRKMGAKNL NSVNIGGGLA VEYTQHKHHQ DKNYTLEEFS ADVVFLLREI VKNKQEIEPD IFIESGRYIS ANHAVLVAPV LELFSHEYNE KSLKIKENNN PPLIDEMLDL LANINEKNAI EYLHDSFDHT ESLFTLFDLG YIDLIDRSNT EVLAHLIVKK AVQLLYVKDH NDILRIQEQV QERYLLNCSF FQSLPDYWGL RQNFPVMPLN KLDEKPTRSA SLWDITCDSD GEIAFDSTKP LFLHDIDIDE EEYFLAFFLV GAYQEVLGMK HNLFTHPTEF SVVFDEKGDY EVEDICEAQT ILDVLDDLDY DTKEIERLLK QKIEDNNQLD MEEKKEIMGR LYVMLSENGY LRTIS // ID O25815_HELPY Unreviewed; 660 AA. AC O25815; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 75. DE RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; DE Flags: Precursor; GN Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411}; GN OrderedLocusNames=HP_1216 {ECO:0000313|EMBL:AAD08260.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08260.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08260.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Involved in the assembly of lipopolysaccharide (LPS) at CC the surface of the outer membrane. {ECO:0000256|HAMAP- CC Rule:MF_01411}. CC -!- FUNCTION: Together with LptE, is involved in the assembly of CC lipopolysaccharide (LPS) at the surface of the outer membrane. CC {ECO:0000256|SAAS:SAAS00542435}. CC -!- SUBUNIT: Component of the lipopolysaccharide transport and CC assembly complex. {ECO:0000256|HAMAP-Rule:MF_01411}. CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP- CC Rule:MF_01411}. CC -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP- CC Rule:MF_01411, ECO:0000256|SAAS:SAAS00542431}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08260.1; -; Genomic_DNA. DR PIR; H64671; H64671. DR ProteinModelPortal; O25815; -. DR DIP; DIP-3073N; -. DR IntAct; O25815; 2. DR MINT; MINT-169586; -. DR STRING; 85962.HP1216; -. DR PaxDb; O25815; -. DR PRIDE; O25815; -. DR EnsemblBacteria; AAD08260; AAD08260; HP_1216. DR PATRIC; 20593805; VBIHelPyl33062_1273. DR eggNOG; ENOG4107R01; Bacteria. DR eggNOG; COG1452; LUCA. DR OMA; NHKIFEI; -. DR OrthoDB; EOG6SZ1CP; -. DR BioCyc; HPY:HP1216-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro. DR GO; GO:0010033; P:response to organic substance; IEA:InterPro. DR HAMAP; MF_01411; LPS_assembly_LptD; 1. DR InterPro; IPR020889; LipoPS_assembly_LptD. DR InterPro; IPR007543; OstA_C. DR Pfam; PF04453; OstA_C; 1. PE 3: Inferred from homology; KW Cell outer membrane {ECO:0000256|HAMAP-Rule:MF_01411}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_01411}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|HAMAP-Rule:MF_01411}. FT SIGNAL 1 18 {ECO:0000256|HAMAP-Rule:MF_01411}. FT CHAIN 19 660 LPS-assembly protein LptD. FT {ECO:0000256|HAMAP-Rule:MF_01411}. FT /FTId=PRO_5005077246. FT DOMAIN 282 651 OstA_C. {ECO:0000259|Pfam:PF04453}. SQ SEQUENCE 660 AA; 77205 MW; 1DBF8F8756EAF7BD CRC64; MIYWLYLAVF FLLSALDAKE IAMQRFDKQN HKIFEILADK VSAKDNVITA SGNAILLNYD VYILADKVRY DTKTKEALLE GNIKVYRGEG LLVKTDYVKL SLNEKYEIIF PFYVQDSVSG IWVSADIASG KDQKYKVKNM STSGCSIDNP IWHVNATSGS FNMQKSHLSM WNPKIYVGDI PVLYLPYIFM STSNKRTTGF LYPEFGTSNL DGFIYLQPFY LAPKNSWDMT FTPQIRYKRG FGLNFEARYI NSKNDRFLFN ARYFRNYTQY VKRYDLRNQN IYGFEFLSSS RDTLQKYFHL KSNIDNGHYI DFLYMNDLDY VRFEKVNKRI TDATHMSRAN YYLQTENNYY GLNIKYFLNL NKINNNRTFQ SVPNLQYHKY LNSLYFRNLL YSVDYQFRNT AREIGYGYVQ NALNVPVGLQ FSLFKKYLSL GLWNDLQLSN VALMQSKNSF VPTIPNESRE FGNFVSSNFS MYVNTDLARE YNKLFHTIQL EAIFNIPYYT FKNGLFSQNM YALSAQALNS YTSPLLRDYD YQGRLYDSVW NPSSILPSNA SNKTVDLTLT QYLYGLGGQE LLYFKISQLI NLDDKVSPFR MPLESKIGFS PLTGLNIFGN VFYSFYQNRL EEISVNANYQ RKFLSFNLSY FLKNNFSSGI NSIVENLRII // ID O25323_HELPY Unreviewed; 218 AA. AC O25323; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 105. DE SubName: Full=Endonuclease III {ECO:0000313|EMBL:AAD07668.1}; GN OrderedLocusNames=HP_0602 {ECO:0000313|EMBL:AAD07668.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07668.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07668.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:1PU6, ECO:0000213|PDB:1PU7, ECO:0000213|PDB:1PU8} RP X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS), AND CARBOXYLATION AT LYS-205. RX PubMed=14517230; DOI=10.1093/emboj/cdg505; RA Eichman B.F., O'Rourke E.J., Radicella J.P., Ellenberger T.; RT "Crystal structures of 3-methyladenine DNA glycosylase MagIII and the RT recognition of alkylated bases."; RL EMBO J. 22:4898-4909(2003). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07668.1; -; Genomic_DNA. DR PIR; B64595; B64595. DR RefSeq; NP_207397.1; NC_000915.1. DR RefSeq; WP_000887243.1; NC_018939.1. DR PDB; 1PU6; X-ray; 1.64 A; A/B=1-218. DR PDB; 1PU7; X-ray; 1.93 A; A/B=1-218. DR PDB; 1PU8; X-ray; 2.13 A; A/B=1-218. DR PDBsum; 1PU6; -. DR PDBsum; 1PU7; -. DR PDBsum; 1PU8; -. DR ProteinModelPortal; O25323; -. DR SMR; O25323; 2-218. DR DIP; DIP-3459N; -. DR IntAct; O25323; 1. DR MINT; MINT-173162; -. DR STRING; 85962.HP0602; -. DR PaxDb; O25323; -. DR EnsemblBacteria; AAD07668; AAD07668; HP_0602. DR GeneID; 899288; -. DR KEGG; heo:C694_03115; -. DR KEGG; hpy:HP0602; -. DR PATRIC; 20592483; VBIHelPyl33062_0630. DR eggNOG; ENOG4108VTX; Bacteria. DR eggNOG; COG2231; LUCA. DR KO; K07457; -. DR OMA; QNTKFEA; -. DR OrthoDB; EOG65J50F; -. DR BioCyc; HPY:HP0602-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.1670.10; -; 1. DR Gene3D; 1.10.340.30; -; 1. DR InterPro; IPR011257; DNA_glycosylase. DR InterPro; IPR003265; HhH-GPD_domain. DR InterPro; IPR000445; HhH_motif. DR InterPro; IPR023170; HTH_base_excis_C. DR Pfam; PF00633; HHH; 1. DR Pfam; PF00730; HhH-GPD; 1. DR SMART; SM00478; ENDO3c; 1. DR SUPFAM; SSF48150; SSF48150; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:1PU6, ECO:0000213|PDB:1PU7, KW ECO:0000213|PDB:1PU8}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Endonuclease {ECO:0000313|EMBL:AAD07668.1}; KW Hydrolase {ECO:0000313|EMBL:AAD07668.1}; KW Nuclease {ECO:0000313|EMBL:AAD07668.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 39 198 ENDO3c. {ECO:0000259|SMART:SM00478}. FT MOD_RES 205 205 N6-carboxylysine. {ECO:0000213|PDB:1PU6, FT ECO:0000213|PDB:1PU7, FT ECO:0000213|PDB:1PU8}. SQ SEQUENCE 218 AA; 25286 MW; 3844D222F21E4BB7 CRC64; MLDSFEILKA LKSLDLLKNA PSWWWPNALK FEALLGAVLT QNTKFEAVLK SLENLKNAFI LENDDEINLK KIAYIEFSKL AECVRPSGFY NQKAKRLIDL SKNILKDFQS FENFKQEVTR EWLLNQKGVG KESADAILCY VCAKEVMVVD KYSYLFLKKI GIEIEDYDEL QHFFEKGVQE NLNSALALYE NTIPLAQLYA RFHGKIVEFS KQKLELKL // ID O25143_HELPY Unreviewed; 276 AA. AC O25143; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE SubName: Full=Protoporphyrinogen oxidase (HemK) {ECO:0000313|EMBL:AAD07450.1}; GN OrderedLocusNames=HP_0381 {ECO:0000313|EMBL:AAD07450.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07450.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07450.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the protein N5-glutamine methyltransferase CC family. {ECO:0000256|SAAS:SAAS00571425}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07450.1; -; Genomic_DNA. DR PIR; E64567; E64567. DR RefSeq; NP_207179.1; NC_000915.1. DR RefSeq; WP_000176078.1; NC_018939.1. DR ProteinModelPortal; O25143; -. DR DIP; DIP-3113N; -. DR IntAct; O25143; 4. DR MINT; MINT-188100; -. DR STRING; 85962.HP0381; -. DR PaxDb; O25143; -. DR EnsemblBacteria; AAD07450; AAD07450; HP_0381. DR GeneID; 900275; -. DR KEGG; heo:C694_01935; -. DR KEGG; hpy:HP0381; -. DR PATRIC; 20591999; VBIHelPyl33062_0393. DR eggNOG; ENOG4105EQY; Bacteria. DR eggNOG; COG2890; LUCA. DR KO; K02493; -. DR OMA; EDQSNID; -. DR OrthoDB; EOG68Q0SZ; -. DR BioCyc; HPY:HP0381-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0008276; F:protein methyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR004556; Modification_methylase_HemK. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR007848; Small_mtfrase_dom. DR Pfam; PF05175; MTS; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00536; hemK_fam; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000256|SAAS:SAAS00461685}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW S-adenosyl-L-methionine {ECO:0000256|SAAS:SAAS00461716}; KW Transferase {ECO:0000256|SAAS:SAAS00461685}. FT DOMAIN 107 189 MTS. {ECO:0000259|Pfam:PF05175}. SQ SEQUENCE 276 AA; 31544 MW; D6CD990CCD224C1C CRC64; MTLSQALNKA KKGLSQKGFR GGLESEILLG FVLQKERVFL HTHAYLELNH EEEVRFFELV EKRLNNCPIE YLLESCDFYG RSFFVNEHVL IPRPETEILV QKALDIISQY HLKEIGEIGI GSGCVSVSLA LENPNLSIYA SDISPNALEV ASKNIEHFCL KERVFLKQTR LWDHMPMIEM LVSNPPYIAR NYPLEKSVLK EPHEALFGGV KGDEILKEIV FLAAKLKIPF LVCEMGYDQL KSLKECLEFC GYDAEFYKDL SGFDRGFVGV LKSFLR // ID O25846_HELPY Unreviewed; 240 AA. AC O25846; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 89. DE SubName: Full=Biotin synthesis protein (BioC) {ECO:0000313|EMBL:AAD08298.1}; GN OrderedLocusNames=HP_1254 {ECO:0000313|EMBL:AAD08298.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08298.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08298.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08298.1; -; Genomic_DNA. DR PIR; F64676; F64676. DR RefSeq; NP_208046.1; NC_000915.1. DR RefSeq; WP_000376795.1; NC_018939.1. DR ProteinModelPortal; O25846; -. DR STRING; 85962.HP1254; -. DR PaxDb; O25846; -. DR DNASU; 900217; -. DR EnsemblBacteria; AAD08298; AAD08298; HP_1254. DR GeneID; 900217; -. DR KEGG; heo:C694_06480; -. DR KEGG; hpy:HP1254; -. DR PATRIC; 20593885; VBIHelPyl33062_1313. DR eggNOG; ENOG4108ZJ0; Bacteria. DR eggNOG; COG0500; LUCA. DR KO; K02169; -. DR OMA; HEVHEFL; -. DR OrthoDB; EOG6GXTQ5; -. DR BioCyc; HPY:HP1254-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR013216; Methyltransf_11. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF08241; Methyltransf_11; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 240 AA; 27713 MW; 63F03EE33300D8DA CRC64; MDSFHSFNQH AFNRHAKTYH LFAHIQQQIA ICLVQFLKQK HYAKVLDLGS GSGAVFNALE RQNILIEEFI ALDNSINMLK LHPTHSINIQ KISLEHADFE EHVFCTYDLV VSSSSLQWAR DLKSVLEKIA LSSKEVALAI HTDFSLHEVH EFLGTPSPLR DLKTLKSLIK NAFKHFQIEL ENKRFALYFN RKQDCLNYLK KCGLLGGSTL SFKQKKHFFQ NMAFEKLSYE VLLFSGIKRS // ID O25712_HELPY Unreviewed; 189 AA. AC O25712; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08126.1}; GN OrderedLocusNames=HP_1080 {ECO:0000313|EMBL:AAD08126.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08126.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08126.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08126.1; -; Genomic_DNA. DR PIR; H64654; H64654. DR RefSeq; NP_207871.1; NC_000915.1. DR RefSeq; WP_000716775.1; NC_018939.1. DR ProteinModelPortal; O25712; -. DR DIP; DIP-3422N; -. DR IntAct; O25712; 2. DR MINT; MINT-165919; -. DR STRING; 85962.HP1080; -. DR PaxDb; O25712; -. DR EnsemblBacteria; AAD08126; AAD08126; HP_1080. DR GeneID; 899616; -. DR KEGG; heo:C694_05580; -. DR KEGG; hpy:HP1080; -. DR PATRIC; 20593499; VBIHelPyl33062_1129. DR eggNOG; ENOG4105XYQ; Bacteria. DR eggNOG; COG1787; LUCA. DR KO; K07448; -. DR KO; K07449; -. DR OMA; ACVITNS; -. DR OrthoDB; EOG6XDGVW; -. DR BioCyc; HPY:HP1080-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004519; F:endonuclease activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR007560; Restrct_endonuc_IV_Mrr. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR Pfam; PF04471; Mrr_cat; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 5 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 64 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 76 184 Mrr_cat. {ECO:0000259|Pfam:PF04471}. SQ SEQUENCE 189 AA; 21707 MW; B5BA90CB24BF4207 CRC64; MKKIAFFIFV ILFSVGIYLI WHVLLEKALE LKLATSANDL LLKLLAILGV FSMLVLFQGI ISSYKKRQLK RILQKIDAMN GFEFEEYSKI FFTSKGFEVS ITQKSGDYGA DLIIEKDGIK WAVQVKRYSH KVSPKAIQEV VSSKAYYACE KACVITNSYF TQAAQKLAQA NEVLLIDRDE WVRFLNEKR // ID O25054_HELPY Unreviewed; 84 AA. AC O25054; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE SubName: Full=Ferredoxin {ECO:0000313|EMBL:AAD07340.1}; GN OrderedLocusNames=HP_0277 {ECO:0000313|EMBL:AAD07340.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07340.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07340.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07340.1; -; Genomic_DNA. DR PIR; E64554; E64554. DR RefSeq; NP_207075.1; NC_000915.1. DR RefSeq; WP_000055463.1; NC_018939.1. DR ProteinModelPortal; O25054; -. DR STRING; 85962.HP0277; -. DR PaxDb; O25054; -. DR EnsemblBacteria; AAD07340; AAD07340; HP_0277. DR GeneID; 898909; -. DR KEGG; heo:C694_01400; -. DR KEGG; hpy:HP0277; -. DR PATRIC; 20591781; VBIHelPyl33062_0288. DR eggNOG; COG1145; LUCA. DR KO; K05337; -. DR OMA; CPVECII; -. DR OrthoDB; EOG6CVV7G; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR Pfam; PF12838; Fer4_7; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 29 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 33 65 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 84 AA; 9514 MW; 39BB560113FC95EC CRC64; MSLLVNDECI ACDACREECP SEAIEEGDPI YNIDPDRCTE CYGYDDDEPR CVSVCPVDAI LPDPNNAESK EELKYKYESL KEQD // ID O25380_HELPY Unreviewed; 933 AA. AC O25380; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07737.1}; GN OrderedLocusNames=HP_0669 {ECO:0000313|EMBL:AAD07737.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07737.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07737.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07737.1; -; Genomic_DNA. DR PIR; E64603; E64603. DR ProteinModelPortal; O25380; -. DR DIP; DIP-3655N; -. DR IntAct; O25380; 3. DR MINT; MINT-163027; -. DR STRING; 85962.HP0669; -. DR REBASE; 6149; HpyAXVIII. DR PaxDb; O25380; -. DR PRIDE; O25380; -. DR EnsemblBacteria; AAD07737; AAD07737; HP_0669. DR PATRIC; 20592623; VBIHelPyl33062_0700. DR eggNOG; ENOG4105EN3; Bacteria. DR eggNOG; COG4889; LUCA. DR OMA; AKEFSHL; -. DR OrthoDB; EOG61CKX9; -. DR BioCyc; HPY:HP0669-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 933 AA; 107359 MW; 715DB4F674537A1E CRC64; MTQAWLMKPL LKKKSKSLEA MMATNHNDEK TLFDAILLQD LADAMYNVMP TKLGDRNYWE NFTKKTGNIA RTLNNRLKII FDKNPEFFHG FLDSLRENIH QNIKEDEALD MITSHIITKP IFDALFGDNI KNPIAKALDK MVEKLSTLGL EGETKDLKNL YESVKTEALH AKSQKSQQEL IKNLYNTFFK EAFKKQSEKL GIVYTPIEVV DFILRATNGI LKKHFNTDFN DQSITIFDPF TGTGSFIARL LSKENALISD EALKEKFQKN LFAFDIVLLS YYIALINITQ AAQNRDGSLN NFKNIALTDS LDYLEEKTNK GVLPLYEDLK ENKGIKDTLA NQNIRVIIGN PPYSAGAKSQ NDNNQNLSHP KLEKLVYEKY GKNSTSRSVG KTTRDTLIQS IRMASDVVKD RGVIGFVVNG GFIDSKSADG FRKCVAKEFS HLYVLNLRGN QRTSGEVSKK EGGKIFDSGS RATVAIIFFV KDKSTPDNTI FYYEVEDYLK REAKLNWLAN FENLDFVPFE KITPNDKGDW INQRNDAFEK LIPLKRDKTL QNDSVFDINS LGVVSGRDPW VYNFSPNILT QSVQKCIDTY NADLKRFNAR FREAFKQRAQ SVKAGDLYKQ LNDKEITTDK TKIAWTDGLK NKLIKNKSAR ESSEERVRLA LYRPFNKQWL YWDKDWINRQ REFSKIFPDK DAQNVVINTG VGNGKDFSAL VSDFISDYSL ISPNQAYPLY YYDDLGNRHY AISGYCLNLF RRHYGDNLIA EEEIFYYIYA IFHHKGYLEK YKNSLAKEAP RIALSEDFKE LSVLGKELAE LHLNYESGEM HDNIKYTTLM NAEIEGYYDV DKMTKKGDCI IYNQNIAITK IPKKAFDYVI NGKSAIDWVI ERYQKTMDKE SLIENNPNDY AGGKYVFELL CRVITLSVKS VDLIEKISEK RFE // ID O25140_HELPY Unreviewed; 221 AA. AC O25140; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 95. DE SubName: Full=Thiol:disulfide interchange protein (DsbC), putative {ECO:0000313|EMBL:AAD07445.1}; GN OrderedLocusNames=HP_0377 {ECO:0000313|EMBL:AAD07445.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07445.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07445.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4FYB, ECO:0000213|PDB:4FYC} RP X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS), AND DISULFIDE BONDS. RX PubMed=23633582; DOI=10.1107/S0907444913001236; RA Yoon J.Y., Kim J., An D.R., Lee S.J., Kim H.S., Im H.N., Yoon H.J., RA Kim J.Y., Kim S.J., Han B.W., Suh S.W.; RT "Structural and functional characterization of HP0377, a thioredoxin- RT fold protein from Helicobacter pylori."; RL Acta Crystallogr. D 69:735-746(2013). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07445.1; -; Genomic_DNA. DR PIR; A64567; A64567. DR RefSeq; NP_207175.1; NC_000915.1. DR RefSeq; WP_000492204.1; NC_018939.1. DR PDB; 4FYB; X-ray; 2.20 A; A/B=1-221. DR PDB; 4FYC; X-ray; 2.31 A; A/B=1-221. DR PDBsum; 4FYB; -. DR PDBsum; 4FYC; -. DR ProteinModelPortal; O25140; -. DR DIP; DIP-3196N; -. DR IntAct; O25140; 13. DR MINT; MINT-165724; -. DR STRING; 85962.HP0377; -. DR PaxDb; O25140; -. DR DNASU; 900277; -. DR EnsemblBacteria; AAD07445; AAD07445; HP_0377. DR GeneID; 900277; -. DR KEGG; heo:C694_01915; -. DR KEGG; hpy:HP0377; -. DR PATRIC; 20591991; VBIHelPyl33062_0389. DR eggNOG; ENOG4105M96; Bacteria. DR eggNOG; COG2143; LUCA. DR KO; K03981; -. DR OMA; YELPGYM; -. DR OrthoDB; EOG6TTVNX; -. DR BioCyc; HPY:HP0377-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13098; Thioredoxin_2; 1. DR SUPFAM; SSF52833; SSF52833; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4FYB, ECO:0000213|PDB:4FYC}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 221 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157714. FT DOMAIN 75 184 Thioredoxin. {ECO:0000259|Pfam:PF13098}. FT DISULFID 89 92 {ECO:0000213|PDB:4FYB}. SQ SEQUENCE 221 AA; 25340 MW; 0A9BDBDB9269A43D CRC64; MFSLSYVSKK FLSVLLLISL FLSACKSNNK DKLDENLLSS GSQSSKELND ERDNIDKKSY AGLEDVFSDN KSISPNDKYM LLVFGRNGCS YCERFKKDLK NVKELRDYIK EHFSAYYVNI SYSKEHDFKV GDKNNEKEIK MSTEELAQIY AVQSTPTIVL SDKTGKTIYE LPGYMPSTQF LAVLEFIGDG KYQDTKDDED LTKKLKAYIK YKTNLSKSKS N // ID O25377_HELPY Unreviewed; 433 AA. AC O25377; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 107. DE RecName: Full=Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; GN OrderedLocusNames=HP_0666 {ECO:0000313|EMBL:AAD07728.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07728.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07728.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07728.1; -; Genomic_DNA. DR PIR; B64603; B64603. DR RefSeq; NP_207460.1; NC_000915.1. DR RefSeq; WP_001004848.1; NC_018939.1. DR ProteinModelPortal; O25377; -. DR IntAct; O25377; 1. DR MINT; MINT-175407; -. DR STRING; 85962.HP0666; -. DR PaxDb; O25377; -. DR EnsemblBacteria; AAD07728; AAD07728; HP_0666. DR GeneID; 898899; -. DR KEGG; heo:C694_03445; -. DR KEGG; hpy:HP0666; -. DR PATRIC; 20592617; VBIHelPyl33062_0697. DR eggNOG; ENOG4105CHG; Bacteria. DR eggNOG; COG0247; LUCA. DR KO; K11473; -. DR OMA; KEMPDNC; -. DR OrthoDB; EOG680WXF; -. DR BioCyc; HPY:HP0666-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0055114; P:oxidation-reduction process; IEA:UniProtKB-KW. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR004017; Cys_rich_dom. DR InterPro; IPR012257; Glc_ox_4Fe-4S. DR InterPro; IPR009051; Helical_ferredxn. DR Pfam; PF02754; CCG; 2. DR PIRSF; PIRSF000139; Glc_ox_4Fe-4S; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. PE 4: Predicted; KW 4Fe-4S {ECO:0000256|PIRNR:PIRNR000139}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Electron transport {ECO:0000256|PIRNR:PIRNR000139}; KW Iron {ECO:0000256|PIRNR:PIRNR000139}; KW Iron-sulfur {ECO:0000256|PIRNR:PIRNR000139}; KW Metal-binding {ECO:0000256|PIRNR:PIRNR000139}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transport {ECO:0000256|PIRNR:PIRNR000139}. FT DOMAIN 183 266 CCG. {ECO:0000259|Pfam:PF02754}. FT DOMAIN 322 403 CCG. {ECO:0000259|Pfam:PF02754}. SQ SEQUENCE 433 AA; 49217 MW; C493757E0DCF1AAF CRC64; MNENINENIF EEVGDACVKC AKCVPGCTIY RIHKDEATSP RGFLDLMRLN AQNKLQLDTN LKHLLETCFL CTACVEICPF HLPIDTLIEK AREKIAQKHG IAWYKKSYFS LLKNRKKMDR VFSTAHFLAP CVFKQVGDSL EPRAVFKGLF KRFKKSALPP LNQKSFLQKH AEMKLLENPI QKVAIFIGCL SNYHYQQVGE SLLYILEKLN IQAIIPKQEC CSAPAYFTGD KDTTLFLVKK NIEWFESYLD KVDAIIVPEA TCASMLINDY YKVFLGEKDK DLYVKRLEKI TPKIYLASVF LEKHTPLKSL LEKIPKGKKE TITYHNPCHA KKTLNAHKEV RNLLNLHYEI KEMPDNCCGF GGITMQTQKA GFSLKVGLLR AKEIIDTKAA ILSAECGACH MQLNNALKSL DDPNTPPFLH PLELIAKALK SAE // ID O24929_HELPY Unreviewed; 565 AA. AC O24929; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 82. DE SubName: Full=Methyl-accepting chemotaxis protein (TlpB) {ECO:0000313|EMBL:AAD07173.1}; GN OrderedLocusNames=HP_0103 {ECO:0000313|EMBL:AAD07173.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07173.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07173.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07173.1; -; Genomic_DNA. DR PIR; G64532; G64532. DR RefSeq; NP_206903.1; NC_000915.1. DR RefSeq; WP_000971620.1; NC_000915.1. DR ProteinModelPortal; O24929; -. DR DIP; DIP-3126N; -. DR IntAct; O24929; 2. DR MINT; MINT-164389; -. DR STRING; 85962.HP0103; -. DR PaxDb; O24929; -. DR PRIDE; O24929; -. DR EnsemblBacteria; AAD07173; AAD07173; HP_0103. DR GeneID; 900016; -. DR KEGG; hpy:HP0103; -. DR PATRIC; 20591417; VBIHelPyl33062_0108. DR eggNOG; ENOG4107SD1; Bacteria. DR eggNOG; COG0840; LUCA. DR KO; K03406; -. DR OMA; KMPKYDG; -. DR OrthoDB; EOG657J89; -. DR BioCyc; HPY:HP0103-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR InterPro; IPR004010; Cache_domain. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR004089; MCPsignal_dom. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF00015; MCPsignal; 1. DR Pfam; PF17200; sCache_2; 1. DR SMART; SM01049; Cache_2; 1. DR SMART; SM00304; HAMP; 1. DR SMART; SM00283; MA; 1. DR PROSITE; PS50111; CHEMOTAXIS_TRANSDUC_2; 1. DR PROSITE; PS50885; HAMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 212 231 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 233 288 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 286 550 Methyl-accepting transducer. FT {ECO:0000259|PROSITE:PS50111}. SQ SEQUENCE 565 AA; 62790 MW; 88282F95DBFE0F9F CRC64; MMFSSMFASL GTRIMLVVLA ALLGLGGLFI GFVKVMQKDV LAQLMEHLET GQYKKREKTL AYMTKIIEQG IHEYYKNFDN ATARKMALDY FKRINDDKGM IYMVVVDKNG VVLFDPVNPK TVGQSGLDAQ SVDGVYYVRG YLEAAKKGGG YTYYKMPKYD GGVPEKKFAY SHYDEVSQMV IATTSYYTDI NTENKAIKEG VNKVFDENTT KLFLWILTAT IALVVLTLIY AKLRIVKRID ELVLKINAFS RGDKDLRAKI DVGDRNDEIS QVGRGINLFV ENARLIMEEI KGISTLNKTS MDKLVQITQE TQKSMKDSST TLNSVKNKAT DIASMMNASI EQSQGLRKRL IETQGLVKES KDAIGDLFSQ ITESAHTEEE LSSKVEQLSR NADDVKSILD IINDIADQTN LLALNAAIEA ARAGEHGRGF AVVADEVRNL AGRTQKSLAE INSTIMVIVQ EINAVSSQMN LNSQKMERLS DMSKSVQETY EKMSSNLSSV VSDSNQSMDD YAKSGHQIEV MVSDFAEVEK VASKTLADSS DILNIATHVS GTTMNLDKQV NLFKT // ID O25476_HELPY Unreviewed; 410 AA. AC O25476; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07831.1}; GN OrderedLocusNames=HP_0787 {ECO:0000313|EMBL:AAD07831.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07831.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07831.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ABC-4 integral membrane protein family. CC {ECO:0000256|SAAS:SAAS00573676}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07831.1; -; Genomic_DNA. DR PIR; C64618; C64618. DR RefSeq; NP_207580.1; NC_000915.1. DR RefSeq; WP_001133691.1; NC_018939.1. DR ProteinModelPortal; O25476; -. DR DIP; DIP-3305N; -. DR IntAct; O25476; 4. DR MINT; MINT-187427; -. DR STRING; 85962.HP0787; -. DR PaxDb; O25476; -. DR EnsemblBacteria; AAD07831; AAD07831; HP_0787. DR GeneID; 900287; -. DR KEGG; heo:C694_04035; -. DR KEGG; hpy:HP0787; -. DR PATRIC; 20592861; VBIHelPyl33062_0819. DR eggNOG; ENOG4105D60; Bacteria. DR eggNOG; COG4591; LUCA. DR KO; K02004; -. DR OMA; FEKKLFV; -. DR OrthoDB; EOG68SVTW; -. DR BioCyc; HPY:HP0787-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR InterPro; IPR003838; ABC_permease_dom. DR InterPro; IPR025857; MacB_PCD. DR Pfam; PF02687; FtsX; 1. DR Pfam; PF12704; MacB_PCD; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00573687}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAAS:SAAS00573687, KW ECO:0000256|SAAS:SAAS00573714, ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAAS:SAAS00573714, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00573714, KW ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 49 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 275 301 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 322 349 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 369 389 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 29 193 MacB_PCD. {ECO:0000259|Pfam:PF12704}. FT DOMAIN 278 402 FtsX. {ECO:0000259|Pfam:PF02687}. SQ SEQUENCE 410 AA; 45959 MW; 9B48E61DEAC54406 CRC64; MPNRSLIFFL IKRYLRFDKS QPFISITALL AFFGVAVGVM VLIVAMAIMN GMSKEFEKKL FVMNYPLTLY TTSPYGISEE VVQALEKKFP NLLFSPYLQT QSLIKSAHSM NGGVVFGVDF SKEKRINEVL NDALKNINEN DLFKNPFNLI VGKSLRYSLN LDLNQKADLF FTELEPTGLT LSPIMKRFTI KGDFDSGLKS YDMSYMYAGL QAISAIRRLP LGLYDGVHVY SKTPMKDIEI LRNALKTINH HGIGIEGWWQ QNGNFFSAME LEKRALFIVL MLIILMASLN IISSLLMVVM NRRKEIALLF SMGSSQKEIQ KTFFYLGNII GLGGVALGVV LAFLSMYLLS VFPIISLPAD VYGINTLPLN LSLMDFTLTL IGSVIIVGLS SYYPSKKAST IDALSVLRNE // ID O24997_HELPY Unreviewed; 793 AA. AC O24997; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07276.1}; GN OrderedLocusNames=HP_0205 {ECO:0000313|EMBL:AAD07276.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07276.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07276.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07276.1; -; Genomic_DNA. DR PIR; E64545; E64545. DR ProteinModelPortal; O24997; -. DR DIP; DIP-3729N; -. DR IntAct; O24997; 1. DR MINT; MINT-184841; -. DR STRING; 85962.HP0205; -. DR PaxDb; O24997; -. DR EnsemblBacteria; AAD07276; AAD07276; HP_0205. DR KEGG; heo:C694_01025; -. DR PATRIC; 20591631; VBIHelPyl33062_0215. DR eggNOG; ENOG4105EDU; Bacteria. DR eggNOG; ENOG410XR0I; LUCA. DR OMA; INENFKQ; -. DR OrthoDB; EOG6TBHBH; -. DR BioCyc; HPY:HP0205-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13304; AAA_21; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 146 173 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 793 AA; 94347 MW; 91C7B7A03E48E769 CRC64; MSELVTEYAN ATNNLLFKEL IKHVSGNSEG IKNFCQCVKE IKKCNTPNKK YNSDEFFIMG KHKQNQLAKI YSYFKKLSEG EIKPQNEDIL KKLKSLDEIF KTTDFTKFTP ETEVKDIIKE IDEKYPINEN FKQQFRTFRL NIGNLKKKIK NSLKYLEKTR KNFERKKESL IREIEYYCKN QKTLEFDYDV LLDNIQQICK KYIASHVVND ASKDIKSMMC QFYLEKIDLL FNSEIEQYRY SDFLESARKF LWEDIKTLDE KSGVHLFPKN IGEIKDKFET NKEKFKQSKN YSEFAEYCRE CNPYTAFQNL RNKVQFPLSG GLSYKSYKLV PTMKEYKEPK ITDNDLKTAL FTLFDYSSPS EFDQWDWFFR NSLFRKMDFN PYNIWKNLNL DDKKDFAEIL EYNMQLKINS LITKEFNKLL AIAEDSSQDS YQLKIRVRHN NKFYDYSKKS TAYEIKLEIH DCRKSHDQNE PIILSQQSTG FQWAFNFMFG FLYNVGSDFS LNKNIIYVMD EPATHLSVPA RKEFRRFLKE YAHKNHVTFV LATHDPFLVD TDHLDEIRIV EKETEGSVIK NHFNYPLNNA GKDSDALDKI KRSLGVGQHV FHNPKKHQII FVEGITDYCY LSAFKLYFNE REFKENPIPF TFLPISGLKN NPNEMKETIQ KLCELDNHPI VLTDDDRKDG SDPQRAKSEQ FKNANEEMHD PIRILQLSDC DRHFKQIEDC FSANDRKKYA KNKQMELAMA FKTRLLYGEK DDVMSEETKK NFLKLFEWIK KECNNLTIKK EYIKFDYNTP QML // ID O25923_HELPY Unreviewed; 968 AA. AC O25923; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE SubName: Full=Type III restriction enzyme R protein {ECO:0000313|EMBL:AAD08414.1}; GN OrderedLocusNames=HP_1371 {ECO:0000313|EMBL:AAD08414.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08414.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08414.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08414.1; -; Genomic_DNA. DR PIR; C64691; C64691. DR RefSeq; NP_208162.1; NC_000915.1. DR RefSeq; WP_001074841.1; NC_018939.1. DR ProteinModelPortal; O25923; -. DR IntAct; O25923; 1. DR MINT; MINT-171047; -. DR STRING; 85962.HP1371; -. DR REBASE; 56824; Hpy26695ORFCP. DR PaxDb; O25923; -. DR EnsemblBacteria; AAD08414; AAD08414; HP_1371. DR GeneID; 900314; -. DR KEGG; heo:C694_07075; -. DR KEGG; hpy:HP1371; -. DR PATRIC; 20594131; VBIHelPyl33062_1436. DR eggNOG; ENOG4108GTE; Bacteria. DR eggNOG; ENOG410XTDY; LUCA. DR OMA; NQEIAFK; -. DR OrthoDB; EOG6XM773; -. DR BioCyc; HPY:HP1371-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF04851; ResIII; 1. DR SUPFAM; SSF52540; SSF52540; 4. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 45 279 ResIII. {ECO:0000259|Pfam:PF04851}. FT COILED 158 185 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 968 AA; 113677 MW; 6F6230308F9B0E9B CRC64; MAKKKDLTTD NEIFVAQKLA EEELNTNEIN EPLERLDFKS FDNNKELLDY QQQALINAFR MLVAYFRDFK ENKKEFYAFY QKHYSFAHCD FAKKKLNPLL KSHFKVENHC VSFENFINRL AFYMATGSGK TIVIIKLVEL LSVAIRMGLI PKKNIMFFSA NENLIQQFEK EIEKYNRNKD YFKQIDFKSL KSVTHKDFYR APKDSVIKQI TLFYYRADLM NDEESKENLL NYKDYWDNGE NYVILDEAHK GNKSESKRQA IFSLLSLKGF LFNFSATFTE ESDLITAVYN LSVGEWVKLG YGKESVLLKK NNLNAFKELK DLNDREKEIA LLKALLLLGM QKRYKTEGYF YDPLMLVFTH SVNVKNSDAE IFFKTLARVI ENDDGSDFLK AKEDLLEELK NPEFLFSDDK DKDYKVKVFK EGLKSMDFKG LKEEVFYANN GHIEVIINPK NNQEIAFKLN TSDKVFCLIR IGDITEWICE KLKSVKVVSK NLSFKEESYF SQIDKSSINI LVGSRTFDTG WDSTRPSVIL FLNIGLDDDA KKLVKQSFGR GVRIESVKNQ RQRLAYLDID GAIKKALKPN AAMLETLFVI PTNYASLEAI LKFQKESENK GENRGSWREI KLEKTPIKHA LFVPCYRKEQ TSILELPESA SFKMSEKNFK DLKEYFNLMS EKHFILKHEI YDPKDYMQLK KMTQEAHFNK VSTWHYKDLD YMISEIKGKL YPNQKVPKDE FNALDSEKIV HFKRIKVKAD KKEELVKTIQ EVKEYAPLDK ETLIKKIAQG EIDPYDTEKH KQNKTFKVGG AELLKLKEHY YTPLIKAKNC DWLKHVVKVE SESDFLEELL KITETLQENY DFWAFSKIDE HLDNLFIPYF NNAAERKFFP DFIFWLEKGG TQIICFIDPK GSKHTDYEHK ADAYQLFKDK IFNPKDNPNL KIKVVLKFYG DKDEVADGYR DYWIKKGKLE DFFLKQLA // ID O25068_HELPY Unreviewed; 828 AA. AC O25068; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE SubName: Full=Flagellin B homolog (Fla) {ECO:0000313|EMBL:AAD07364.1}; GN OrderedLocusNames=HP_0295 {ECO:0000313|EMBL:AAD07364.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07364.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07364.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the bacterial flagellin family. CC {ECO:0000256|SAAS:SAAS00588699}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07364.1; -; Genomic_DNA. DR PIR; G64556; G64556. DR RefSeq; NP_207093.1; NC_000915.1. DR RefSeq; WP_001266636.1; NC_018939.1. DR ProteinModelPortal; O25068; -. DR DIP; DIP-3204N; -. DR IntAct; O25068; 3. DR MINT; MINT-164466; -. DR STRING; 85962.HP0295; -. DR PaxDb; O25068; -. DR EnsemblBacteria; AAD07364; AAD07364; HP_0295. DR GeneID; 898810; -. DR KEGG; heo:C694_01490; -. DR KEGG; hpy:HP0295; -. DR PATRIC; 20591817; VBIHelPyl33062_0306. DR eggNOG; ENOG4107RP7; Bacteria. DR eggNOG; COG1344; LUCA. DR KO; K02397; -. DR OMA; SKVDRPP; -. DR OrthoDB; EOG6X9MHB; -. DR BioCyc; HPY:HP0295-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009288; C:bacterial-type flagellum; IEA:UniProtKB-KW. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR Gene3D; 1.20.1330.10; -; 2. DR InterPro; IPR001029; Flagellin_D0/D1. DR Pfam; PF00669; Flagellin_N; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|SAAS:SAAS00482835}; KW Cell projection {ECO:0000313|EMBL:AAD07364.1}; KW Cilium {ECO:0000313|EMBL:AAD07364.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07364.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 9 139 Flagellin_D0/D1. FT {ECO:0000259|Pfam:PF00669}. SQ SEQUENCE 828 AA; 91997 MW; DC97B59F7271F993 CRC64; MRVTFGSKYN QMNNYQNALQ NKINDANTQI ASGLKIRYGY QNSDINNQNL KFQYEENTLD QGIDVAQNAY TSTLNTDKAL QEFSKTMEAF KTKLIQSAND VHSETSRAAI ANDLERLKEH MINVANTSIG GEFLFGGSKV DRPPIDSNGK YHGNGEDLNV LISSDNLVPY NISGQDLFLG TDKDKHKLIT TNIKLFNQNK LHPDVMDALE HSSLPEEVFI KPSDTLRELI GDNDKDPTND PKEFFYLQGV RPDGSSFKEK FALDKAYQNQ ESASKVSDLL DKIAHAYGNT SQNKVVDVSL NNWGQIEIKN LTPGSENLDF HLISSDGDFD DLDALRSSGK RVTEYIKSAF VTDRSLSQVK AVPNMYNPKV LEVPSVFVTK DNVLANKNTK LSEIFGDSVE TLKINASRLD ETSAIKIPNL PVYLDIPILL DVKNSTIKDL KDAIKKRFNN EVDVEIETNG RLRIIDNSSK ESPISLALSA LDAKGLEVAG IPTNNASEYQ KTYFNKEGAK LESNVAQTAQ NGAANGSTKL SEAAKGSLEN SVFNMKLNDV NGLFLEAQMN LDNNGAFLSL PNGIKIPLYD PTSADIQASK PNEVTYRQLM DAMSIALNYS NTDPAIYQQI SDNPTSKESK ERFIGLLKQA KDNLSVNLNE EGKVIIQDNM HSNTKMQFML FDKDANDFSQ NALHSDKPSL KLNANNALII DKPSVNFFDQ LENTITSVRK GIYRPDALGD TYSSDMRNLG IQNGITLIDH LSDHIEKMIA KNGAHGKAFE NIIRRNEVLK TQVQSIRGET TGTDMAETYN KFSNLTNNYN AVLASTNKIN NLSLTKYL // ID O24886_HELPY Unreviewed; 310 AA. AC O24886; Q7BA93; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE SubName: Full=Nodulation protein (NolK) {ECO:0000313|EMBL:AAD07113.1}; GN OrderedLocusNames=HP_0045 {ECO:0000313|EMBL:AAD07113.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07113.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07113.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07113.1; -; Genomic_DNA. DR PIR; E64525; E64525. DR RefSeq; NP_206846.1; NC_000915.1. DR RefSeq; WP_001002442.1; NC_018939.1. DR ProteinModelPortal; O24886; -. DR DIP; DIP-3119N; -. DR IntAct; O24886; 2. DR MINT; MINT-174103; -. DR STRING; 85962.HP0045; -. DR PaxDb; O24886; -. DR EnsemblBacteria; AAD07113; AAD07113; HP_0045. DR GeneID; 899164; -. DR KEGG; heo:C694_00205; -. DR KEGG; hpy:HP0045; -. DR PATRIC; 20591289; VBIHelPyl33062_0046. DR eggNOG; ENOG4105C30; Bacteria. DR eggNOG; COG0451; LUCA. DR KO; K02377; -. DR OMA; RMHTAKL; -. DR OrthoDB; EOG6JB132; -. DR BioCyc; HPY:HP0045-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050577; F:GDP-L-fucose synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070401; F:NADP+ binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042351; P:'de novo' GDP-L-fucose biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00956; GDP_fucose_synth; 1. DR InterPro; IPR001509; Epimerase_deHydtase_N. DR InterPro; IPR028614; GDP_fucose/colitose_synth. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01370; Epimerase; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 238 Epimerase. {ECO:0000259|Pfam:PF01370}. SQ SEQUENCE 310 AA; 34812 MW; 2688E2F41CC633F6 CRC64; MNEIILITGA YGMVGQNTAL YFKKNKPDVT LLTPKKSELC LLDKDNVQAY LKEYKPTGII HCAGRVGGIV ANMNDLSTYM VENLLMGLYL FSSALDSGVK KAINLASSCA YPKFAPNPLK ESDLLNGSLE PTNEGYALAK LSVMKYCEYV SAEKGVFYKT LVPCNLYGEF DKFEEKIAHM IPGLIARMHT AKLKNEKEFA MWGDGTARRE YLNAKDLARF ISLAYENIAS IPSVMNVGSG VDYSIEEYYE KVAQVLDYKG VFVKDLSKPV GMQQKLMDIS KQRALKWELE IPLEQGIKEA YEYYLKLLEV // ID O25120_HELPY Unreviewed; 258 AA. AC O25120; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=Flagellar export protein (FliH) {ECO:0000313|EMBL:AAD07421.1}; GN OrderedLocusNames=HP_0353 {ECO:0000313|EMBL:AAD07421.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07421.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07421.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC Self; NbExp=3; IntAct=EBI-958087, EBI-958087; CC O07025:fliI; NbExp=4; IntAct=EBI-958087, EBI-957989; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07421.1; -; Genomic_DNA. DR PIR; A64564; A64564. DR RefSeq; NP_207151.1; NC_000915.1. DR RefSeq; WP_000056222.1; NC_000915.1. DR ProteinModelPortal; O25120; -. DR DIP; DIP-3389N; -. DR IntAct; O25120; 3. DR MINT; MINT-162403; -. DR STRING; 85962.HP0353; -. DR PaxDb; O25120; -. DR DNASU; 900095; -. DR EnsemblBacteria; AAD07421; AAD07421; HP_0353. DR GeneID; 900095; -. DR KEGG; heo:C694_01790; -. DR KEGG; hpy:HP0353; -. DR PATRIC; 20591939; VBIHelPyl33062_0366. DR eggNOG; ENOG4105SUS; Bacteria. DR eggNOG; COG1317; LUCA. DR KO; K02411; -. DR OMA; SEDHLMA; -. DR OrthoDB; EOG6CS026; -. DR BioCyc; HPY:HP0353-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR InterPro; IPR018035; Flagellar_FliH/T3SS_HrpE. DR Pfam; PF02108; FliH; 1. PE 1: Evidence at protein level; KW Cell projection {ECO:0000313|EMBL:AAD07421.1}; KW Cilium {ECO:0000313|EMBL:AAD07421.1}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07421.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 122 248 FliH. {ECO:0000259|Pfam:PF02108}. FT COILED 68 95 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 258 AA; 29322 MW; 1EB2F2794CB4A969 CRC64; MSLNSRKNLI QKDHLNKHDI QKYEFKNMAN LPPKTNPNSA SLETPNLEEP LEKKAIENDL IDCLLKKTDE LSSHLVKLQM QFEKAQEESK VLIENAKNDG YKIGFKEGEE KMRNELTHSV NEEKNQLLHA ITTLDEKMKK SEDHLMALEK ELSAIAIDIA KEVILKEVED NSQKVALALA EELLKNVLDA TDIHLKVNPL DYPYLNERLQ NASKIKLESN EAISKGGVMI TSSNGSLDGN LMERFKTLKE SVLENFKV // ID O25724_HELPY Unreviewed; 269 AA. AC O25724; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE RecName: Full=Flagellar basal body protein {ECO:0000256|RuleBase:RU362116}; GN OrderedLocusNames=HP_1092 {ECO:0000313|EMBL:AAD08138.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08138.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08138.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|RuleBase:RU362116}. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000256|RuleBase:RU362116, CC ECO:0000256|SAAS:SAAS00560878}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08138.1; -; Genomic_DNA. DR PIR; D64656; D64656. DR RefSeq; NP_207883.1; NC_000915.1. DR RefSeq; WP_001179202.1; NC_018939.1. DR ProteinModelPortal; O25724; -. DR DIP; DIP-3379N; -. DR IntAct; O25724; 6. DR MINT; MINT-160184; -. DR STRING; 85962.HP1092; -. DR PaxDb; O25724; -. DR EnsemblBacteria; AAD08138; AAD08138; HP_1092. DR GeneID; 899628; -. DR KEGG; heo:C694_05640; -. DR KEGG; hpy:HP1092; -. DR PATRIC; 20593523; VBIHelPyl33062_1141. DR eggNOG; ENOG4105KTQ; Bacteria. DR eggNOG; COG4786; LUCA. DR KO; K02392; -. DR OMA; DMYSKVL; -. DR OrthoDB; EOG6M6JKX; -. DR BioCyc; HPY:HP1092-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR001444; Flag_bb_rod_N. DR InterPro; IPR019776; Flagellar_basal_body_rod_CS. DR InterPro; IPR020013; Flagellar_FlgE/F/G. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR Pfam; PF00460; Flg_bb_rod; 1. DR Pfam; PF06429; Flg_bbr_C; 1. DR TIGRFAMs; TIGR03506; FlgEFG_subfam; 1. DR PROSITE; PS00588; FLAGELLA_BB_ROD; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|RuleBase:RU362116}; KW Cell projection {ECO:0000313|EMBL:AAD08138.1}; KW Cilium {ECO:0000313|EMBL:AAD08138.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08138.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 6 35 Flg_bb_rod. {ECO:0000259|Pfam:PF00460}. FT DOMAIN 192 263 Flg_bbr_C. {ECO:0000259|Pfam:PF06429}. SQ SEQUENCE 269 AA; 30099 MW; 445A24CBFB318A8E CRC64; MQNGYYAATG AMATQFNRLD LTSNNLANLN TNGFKRDDAI TGDFLRLYQQ YREQLPLEDQ TKASAKYLNR NLNRVPILSE IYTDRSLGAF EETHNPLDFA LTSPNLYFAI QTNEGIAYTR DGHFSVDKDG FLVTLNGFRV LSRSGLNEKG GIMLMPDAEI EVDQNGGITF RDNEAQIQAG ALALVSFSEP KNLKKIGQNL YTYQGEGVHQ VSDSGALRQY MLEKSNVNAV REMSALIEIN RFLDMYSKVL KTHQDDMNAE AINKLAAKA // ID O25490_HELPY Unreviewed; 200 AA. AC O25490; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 92. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07856.1}; GN OrderedLocusNames=HP_0810 {ECO:0000313|EMBL:AAD07856.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07856.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07856.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07856.1; -; Genomic_DNA. DR PIR; B64621; B64621. DR RefSeq; NP_207603.1; NC_000915.1. DR RefSeq; WP_001132760.1; NC_018939.1. DR ProteinModelPortal; O25490; -. DR DIP; DIP-3495N; -. DR IntAct; O25490; 9. DR MINT; MINT-161495; -. DR STRING; 85962.HP0810; -. DR PaxDb; O25490; -. DR DNASU; 899940; -. DR EnsemblBacteria; AAD07856; AAD07856; HP_0810. DR GeneID; 899940; -. DR KEGG; heo:C694_04150; -. DR KEGG; hpy:HP0810; -. DR PATRIC; 20592907; VBIHelPyl33062_0842. DR eggNOG; ENOG4106H78; Bacteria. DR eggNOG; COG0742; LUCA. DR OMA; DPPFETS; -. DR OrthoDB; EOG64XXSX; -. DR BioCyc; HPY:HP0810-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0031167; P:rRNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR004398; RNA_MeTrfase_RsmD. DR InterPro; IPR029063; SAM-dependent_MTases. DR PIRSF; PIRSF004553; CHP00095; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00095; TIGR00095; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 200 AA; 22597 MW; FDC2ED81F64738F2 CRC64; MPNHQPVKKF KIIGGACKGL GLNLPNISST RPTKAIVRES FFNTLQAEIN GAHFIEVFSG SASMGLEALS RGAKSAVFFE QNKSAYKTLL ENISLFKNRL KKEMEIQTFL DDAFKLLPTL CLKNGVLNII YLDPPFETSG FLGIYEKCFQ ALERLLKRFN PKNLLVVFEH ESMHEMPKSL VTLAIIKQKK FGKTTLTYFQ // ID O25615_HELPY Unreviewed; 153 AA. AC O25615; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 103. DE RecName: Full=Acyl carrier protein {ECO:0000256|RuleBase:RU003545}; GN OrderedLocusNames=HP_0962 {ECO:0000313|EMBL:AAD08009.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08009.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08009.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Carrier of the growing fatty acid chain in fatty acid CC biosynthesis. {ECO:0000256|RuleBase:RU003545}. CC -!- PATHWAY: Lipid metabolism; fatty acid biosynthesis. CC {ECO:0000256|RuleBase:RU003545}. CC -!- PTM: 4'-phosphopantetheine is transferred from CoA to a specific CC serine of apo-ACP by acpS. {ECO:0000256|RuleBase:RU003545}. CC -!- SIMILARITY: Contains 1 acyl carrier domain. CC {ECO:0000256|RuleBase:RU003545}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08009.1; -; Genomic_DNA. DR PIR; B64640; B64640. DR RefSeq; NP_207754.1; NC_000915.1. DR RefSeq; WP_001862971.1; NC_000915.1. DR ProteinModelPortal; O25615; -. DR SMR; O25615; 82-152. DR DIP; DIP-3606N; -. DR IntAct; O25615; 23. DR MINT; MINT-161937; -. DR STRING; 85962.HP0962; -. DR PaxDb; O25615; -. DR PRIDE; O25615; -. DR DNASU; 899495; -. DR EnsemblBacteria; AAD08009; AAD08009; HP_0962. DR GeneID; 899495; -. DR KEGG; hpy:HP0962; -. DR PATRIC; 20593237; VBIHelPyl33062_1000. DR eggNOG; ENOG4105VNB; Bacteria. DR eggNOG; COG0236; LUCA. DR KO; K02078; -. DR OMA; GDVMRYI; -. DR OrthoDB; EOG6MWNJM; -. DR UniPathway; UPA00094; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 1.10.1200.10; -; 1. DR HAMAP; MF_01217; Acyl_carrier; 1. DR InterPro; IPR003231; Acyl_carrier. DR InterPro; IPR009081; PP-bd_ACP. DR Pfam; PF00550; PP-binding; 1. DR ProDom; PD000887; PD000887; 1. DR SUPFAM; SSF47336; SSF47336; 1. DR TIGRFAMs; TIGR00517; acyl_carrier; 1. DR PROSITE; PS50075; ACP_DOMAIN; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Phosphopantetheine {ECO:0000256|RuleBase:RU003545}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 80 149 Acyl carrier. FT {ECO:0000259|PROSITE:PS50075}. SQ SEQUENCE 153 AA; 17917 MW; 5A1D715D9A394404 CRC64; MIEENYKEER YTERVNQGGV WGSFKRKFLS WADDDAGYDE EKDYENLLNN EKLQKKLREW RRTKNQQNNN KTFNTNDTNS FETIQSVIAE QLNVDAVQVT PEAEFVKDLG ADSDVVELIM ALEEKFGIEI PDEQAEKIVN VGDVMRYIEK QLI // ID O25656_HELPY Unreviewed; 444 AA. AC O25656; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 97. DE SubName: Full=Protease (PqqE) {ECO:0000313|EMBL:AAD08056.1}; GN OrderedLocusNames=HP_1012 {ECO:0000313|EMBL:AAD08056.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08056.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08056.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the peptidase M16 family. CC {ECO:0000256|RuleBase:RU004447}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08056.1; -; Genomic_DNA. DR PIR; D64646; D64646. DR RefSeq; NP_207802.1; NC_000915.1. DR RefSeq; WP_000680224.1; NC_018939.1. DR ProteinModelPortal; O25656; -. DR DIP; DIP-3200N; -. DR IntAct; O25656; 7. DR MINT; MINT-167039; -. DR STRING; 85962.HP1012; -. DR PaxDb; O25656; -. DR DNASU; 899547; -. DR EnsemblBacteria; AAD08056; AAD08056; HP_1012. DR GeneID; 899547; -. DR KEGG; heo:C694_05240; -. DR KEGG; hpy:HP1012; -. DR PATRIC; 20593359; VBIHelPyl33062_1060. DR eggNOG; ENOG4105C1V; Bacteria. DR eggNOG; COG0612; LUCA. DR OMA; RENAFTS; -. DR OrthoDB; EOG6NGVNG; -. DR BioCyc; HPY:HP1012-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR Gene3D; 3.30.830.10; -; 2. DR InterPro; IPR011249; Metalloenz_LuxS/M16. DR InterPro; IPR011237; Pept_M16_dom. DR InterPro; IPR011765; Pept_M16_N. DR InterPro; IPR001431; Pept_M16_Zn_BS. DR InterPro; IPR007863; Peptidase_M16_C. DR Pfam; PF00675; Peptidase_M16; 1. DR Pfam; PF05193; Peptidase_M16_C; 1. DR SUPFAM; SSF63411; SSF63411; 2. DR PROSITE; PS00143; INSULINASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD08056.1}; KW Protease {ECO:0000313|EMBL:AAD08056.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 28 {ECO:0000256|SAM:SignalP}. FT CHAIN 29 444 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157810. FT DOMAIN 57 159 Peptidase_M16. FT {ECO:0000259|Pfam:PF00675}. FT DOMAIN 198 376 Peptidase_M16_C. FT {ECO:0000259|Pfam:PF05193}. SQ SEQUENCE 444 AA; 50331 MW; 3A6092EF0792EAB2 CRC64; MKHFSVKRLL GLSSVLLVTL GASMHAQSYL PKHESVTLKN GLQVVSVPLE NKTGVIEVDV LYKVGSRNET MGKSGIAHML EHLNFKSTKN LKAGEFDKIV KRFGGVSNAS TSFDITRYFI KTSQANLDKS LELFAETMGS LNLKEDEFLP ERQVVAEERR WRTDNSPIGM LYFRFFNTAY VYHPYHWTPI GFMDDIQNWT LKDIKKFHSL YYQPKNAIVL VVGDVNSQKV FELSKKHFES LKNLDEKAIP TPYMKEPKQD GARTAVVHKD GVHLEWVALG YKVPAFKHKD QVALDALSRL LGEGKSSWLQ SELVDKKRLA SQAFSHNMQL QDESVFLFIA GGNPNVKAEA LQKEIVALLE KLKKGEITQA ELDKLKINQK ADFISNLESS SDVAGLFADY LVQNDIQGLT DYQRQFLDLK VSDLVRVANE YFKDTQSTTV FLKP // ID O25438_HELPY Unreviewed; 241 AA. AC O25438; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 87. DE SubName: Full=2-hydroxy-6-oxohepta-2,4-dienoate hydrolase {ECO:0000313|EMBL:AAD07785.1}; GN OrderedLocusNames=HP_0739 {ECO:0000313|EMBL:AAD07785.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07785.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07785.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07785.1; -; Genomic_DNA. DR PIR; C64612; C64612. DR RefSeq; NP_207533.1; NC_000915.1. DR RefSeq; WP_001129409.1; NC_018939.1. DR ProteinModelPortal; O25438; -. DR DIP; DIP-3493N; -. DR IntAct; O25438; 14. DR MINT; MINT-160138; -. DR STRING; 85962.HP0739; -. DR ESTHER; helpy-HP0739; AlphaBeta_hydrolase. DR PaxDb; O25438; -. DR DNASU; 900222; -. DR EnsemblBacteria; AAD07785; AAD07785; HP_0739. DR GeneID; 900222; -. DR KEGG; heo:C694_03795; -. DR KEGG; hpy:HP0739; -. DR PATRIC; 20592765; VBIHelPyl33062_0771. DR eggNOG; ENOG4108RUW; Bacteria. DR eggNOG; COG0596; LUCA. DR OMA; TKDYANI; -. DR OrthoDB; EOG689HSQ; -. DR BioCyc; HPY:HP0739-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR InterPro; IPR000073; AB_hydrolase_1. DR Pfam; PF12697; Abhydrolase_6; 1. DR SUPFAM; SSF53474; SSF53474; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD07785.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 241 AA; 27527 MW; 57EF24BB0BC79333 CRC64; MAKRSIAYLD SVFDISYTFI DHHSPLNALF LHGWGSSKEI MQQAFQGCFL NYNHLYVDLP GFNQSPNDEK VLETKDYANI INLFLKSVGK KAHVVFGHSF GGKVAILCEN ERMVLLSSAG ILEPKPLKVR CKILLAKIFK KLGLNLGFLR SKDAMGLNQA MYETFKKVIS EDFSDHFKRC EKEVLLFWGK DDKATPLSSA QKMQTLLKRS VLFVLEGDHF FFLNQAKEIE KLVENYHHAK S // ID O26013_HELPY Unreviewed; 682 AA. AC O26013; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00553569}; DE EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00553569}; GN OrderedLocusNames=HP_1478 {ECO:0000313|EMBL:AAD08516.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08516.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08516.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000256|SAAS:SAAS00553768}. CC -!- SIMILARITY: Belongs to the helicase family. UvrD subfamily. CC {ECO:0000256|SAAS:SAAS00597767}. CC -!- SIMILARITY: Contains uvrD-like helicase ATP-binding domain. CC {ECO:0000256|SAAS:SAAS00553567}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08516.1; -; Genomic_DNA. DR PIR; F64704; F64704. DR RefSeq; NP_208269.1; NC_000915.1. DR RefSeq; WP_000968580.1; NC_000915.1. DR ProteinModelPortal; O26013; -. DR DIP; DIP-3420N; -. DR IntAct; O26013; 3. DR MINT; MINT-169185; -. DR STRING; 85962.HP1478; -. DR PaxDb; O26013; -. DR PRIDE; O26013; -. DR EnsemblBacteria; AAD08516; AAD08516; HP_1478. DR GeneID; 899814; -. DR KEGG; hpy:HP1478; -. DR PATRIC; 20594367; VBIHelPyl33062_1552. DR eggNOG; ENOG4105C4R; Bacteria. DR eggNOG; COG0210; LUCA. DR KO; K03657; -. DR OMA; HYRTQKG; -. DR OrthoDB; EOG64N9TW; -. DR BioCyc; HPY:HP1478-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR Gene3D; 3.40.50.300; -; 3. DR InterPro; IPR014017; DNA_helicase_UvrD-like_C. DR InterPro; IPR000212; DNA_helicase_UvrD/REP. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014016; UvrD-like_ATP-bd. DR PANTHER; PTHR11070; PTHR11070; 1. DR Pfam; PF00580; UvrD-helicase; 2. DR Pfam; PF13361; UvrD_C; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1. DR PROSITE; PS51217; UVRD_HELICASE_CTER; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08516.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Helicase {ECO:0000256|SAAS:SAAS00493105, ECO:0000313|EMBL:AAD08516.1}; KW Hydrolase {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08516.1}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD08516.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 271 UvrD-like helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51198}. FT DOMAIN 272 540 UvrD-like helicase C-terminal. FT {ECO:0000259|PROSITE:PS51217}. SQ SEQUENCE 682 AA; 77849 MW; 208383EE501493B0 CRC64; MMDFEKSILD HLNGAQKIAA SHIQGPLLIL AGAGSGKTKT LTSRLAYLIG VCGVPSENTL TLTFTNKASK EMQERALKLL KNQALIPPLL CTFHRFGLLF LRQHMNLLKR ACDFSVLDSD EVKTLCKQLK ISNFRASISQ IKNGMMDLSM QDSECYKAYE LYQNALKKDN LVDFDDLLFL SLKILQDNET IAKETSERYH YIMVDEYQDT NALQLEFLKK LSFTHHNLCV VGDDDQSIYG FRGADISNIL NFSKHFKGAK IVKLETNYRS SAEILACANS LISHNQHRHI KTLQSFKGSH KSVVCKEYLT QKEESLDVAY QIKALLKKGE NLENIAILYR LNGLSRSIEE SLNALNIPYR LIGALSFYER AEIKDALAFM HLVAKKDDRF FIKRVLNKPP RGLGKITQEW IFSLLDEEGL NLEEALKLGA FKDKLNPKNE YALKQFIAMI GRLREAFEIS VEEFCSRFLE ETNLLKSYEK EDNYEEREGF VKELLTLVKE YFKTNPTHSL LDFLNESVLD AHNTENAQKV SCMSVHMSKG LEFKHVFVIG LEEGFFPHRG FNQESDLEEE RRLAYVAITR AKEELQLSYV KERSYFGRKI SCSPSVFLEE AQLLNQDNPP KQDHQKDAPI KVGDLIRHKI FGTGRVLGVE KGLSGLCLKI NCGGNVYDKI SEKFVEKVDN GF // ID O25033_HELPY Unreviewed; 338 AA. AC O25033; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 90. DE SubName: Full=Oligopeptide ABC transporter, permease protein (OppC) {ECO:0000313|EMBL:AAD07318.1}; GN OrderedLocusNames=HP_0251 {ECO:0000313|EMBL:AAD07318.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07318.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07318.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032, CC ECO:0000256|SAAS:SAAS00537635}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07318.1; -; Genomic_DNA. DR PIR; C64551; C64551. DR RefSeq; NP_207049.1; NC_000915.1. DR RefSeq; WP_010875457.1; NC_000915.1. DR ProteinModelPortal; O25033; -. DR STRING; 85962.HP0251; -. DR PaxDb; O25033; -. DR PRIDE; O25033; -. DR EnsemblBacteria; AAD07318; AAD07318; HP_0251. DR GeneID; 899180; -. DR KEGG; hpy:HP0251; -. DR PATRIC; 20591727; VBIHelPyl33062_0262. DR eggNOG; ENOG4108IYQ; Bacteria. DR eggNOG; COG4239; LUCA. DR KO; K13895; -. DR OMA; PSPPTWM; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0251-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR025966; OppC_N. DR Pfam; PF00528; BPD_transp_1; 1. DR Pfam; PF12911; OppC_N; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00496716}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00496716, ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00496724}. FT TRANSMEM 141 167 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 179 196 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 202 224 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 245 264 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 306 325 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 137 327 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 338 AA; 37729 MW; 692EDDCF52852E00 CRC64; MSSLFKMRIL SFKKNKRAVF SLYLFIALLA LSLLAPLWVN DRPLFIYKDN KAYFPMFKNY AEVEFGGDFF TPTDYNDPYV QNTLLKDAFI IHALIPYSYD TIIMDLDSPA PTPPSFKHLL GTDDQARDVL ARLVYGYRVS LIFGILLTLF SVLIGVSLGA FQGYYGGLVD LVGQRLSEIW SAIPMLFLLI VISSAFNSNF WIILFLVLLF SWMGLSQVVR TEFLKARNMD YTKAARALGV NDLKIIFYHV LPNALVATIT YVPFLMAASI STLVSLDFLG FGMPIGSASL GELVNQGKDN LTTPHLAIVA FVAISLLLSV LVFIGEGVRD AFNANMLK // ID O25624_HELPY Unreviewed; 413 AA. AC O25624; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08018.1}; GN OrderedLocusNames=HP_0971 {ECO:0000313|EMBL:AAD08018.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08018.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08018.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08018.1; -; Genomic_DNA. DR PIR; C64641; C64641. DR RefSeq; NP_207762.1; NC_000915.1. DR RefSeq; WP_010875571.1; NC_000915.1. DR ProteinModelPortal; O25624; -. DR DIP; DIP-3548N; -. DR IntAct; O25624; 2. DR MINT; MINT-166133; -. DR STRING; 85962.HP0971; -. DR TCDB; 2.A.6.1.14; the resistance-nodulation-cell division (rnd) superfamily. DR PaxDb; O25624; -. DR PRIDE; O25624; -. DR EnsemblBacteria; AAD08018; AAD08018; HP_0971. DR GeneID; 899503; -. DR KEGG; hpy:HP0971; -. DR PATRIC; 20593255; VBIHelPyl33062_1009. DR eggNOG; ENOG4105Z62; Bacteria. DR eggNOG; ENOG41127I4; LUCA. DR OMA; QNSYMDA; -. DR OrthoDB; EOG6Q2SGD; -. DR BioCyc; HPY:HP0971-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR InterPro; IPR003423; OMP_efflux. DR Pfam; PF02321; OEP; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 413 AA; 47710 MW; 96692D247C13E3A4 CRC64; MSMFSAGMLS AKIFTLQEFF KEVEINSMEL IGKKADFKSR LNEQRSVNAW DFPYIENETS MVKNFQGIIE AQPRTLLVVR PKLPWVSSLL SKSLSIKTIQ YDKSYQLNKN LAFIGAKRLY LTYVMTKEKY QVYVQREANF YSQLKIAKEK VKAGSMSEKD YINFNNSYLE SKLAKTNVET KLIDLEKMLD TMLAIVEPVK EGAHFDTYLD HLHDVKVIGL DFEYVRLEPE ALKFKLDRSL YVDILDLTAK DYQVNAKLAN RDVFNAFEFG IGSESYNSST NLSVEVRIPL PVTPKNIYQK RKFLDLQSGT LAQNEVMKRN IRINANSYLN QLKTKEAYIE TQKEAIANKK RLMEMGRIAY EAQKIGLFEY LIYQNSYMDA LITLAEAKIE YIDISALLEE TLGESLTRLG ELH // ID O25887_HELPY Unreviewed; 1035 AA. AC O25887; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 74. DE SubName: Full=Cation efflux system protein (CzcA) {ECO:0000313|EMBL:AAD08370.1}; GN OrderedLocusNames=HP_1329 {ECO:0000313|EMBL:AAD08370.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08370.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08370.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the resistance-nodulation-cell division CC (RND) (TC 2.A.6) family. {ECO:0000256|SAAS:SAAS00536972}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08370.1; -; Genomic_DNA. DR PIR; A64686; A64686. DR RefSeq; NP_208121.1; NC_000915.1. DR RefSeq; WP_000570460.1; NC_000915.1. DR ProteinModelPortal; O25887; -. DR DIP; DIP-3479N; -. DR IntAct; O25887; 3. DR MINT; MINT-160952; -. DR STRING; 85962.HP1329; -. DR PaxDb; O25887; -. DR PRIDE; O25887; -. DR EnsemblBacteria; AAD08370; AAD08370; HP_1329. DR GeneID; 900199; -. DR KEGG; hpy:HP1329; -. DR PATRIC; 20594039; VBIHelPyl33062_1390. DR eggNOG; ENOG4108IJF; Bacteria. DR eggNOG; COG3696; LUCA. DR KO; K07787; -. DR OMA; LIFMNLM; -. DR OrthoDB; EOG6MPWR0; -. DR BioCyc; HPY:HP1329-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 3.30.2090.10; -; 2. DR InterPro; IPR027463; AcrB_DN_DC_subdom. DR InterPro; IPR001036; Acrflvin-R. DR InterPro; IPR004763; CzcA/CusA/SilA/NccA/HelA/CnrA. DR Pfam; PF00873; ACR_tran; 1. DR PRINTS; PR00702; ACRIFLAVINRP. DR SUPFAM; SSF82714; SSF82714; 2. DR TIGRFAMs; TIGR00914; 2A0601; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 333 352 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 359 379 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 385 406 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 434 453 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 473 494 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 526 543 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 860 879 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 886 906 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 912 936 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 970 987 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 999 1025 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 1035 AA; 115335 MW; 317880F132983BA5 CRC64; MIEKIIDLSV KNKLLTTLVT LLIFLASLWA IKSVRLDALP DLSPAQVVVQ ITYPNQSPKI VQEQVTYPLV STFMSIANID TVRGISSYES GLIYIIFKDG VNLYWARDRV LEQLNRVSNL PKDAKVEIGS DSTSIGWAYQ YALSSDSKNL SDLKVLQDFY YRYALLGVDG VSEVASVGGF VKDYEVTLQN DSLIRYNLSL EQVANAIKNS NNDTGGGVIL ENGFEKIIRS HGYIQSLKDL EEIVVKKEGA IPLKIKDIAS VRLTPKPRRG AANLNGDKEV VGGIVMVRYH ADTYKVLKAI KEKIATLQAS NPDVKITSVY DRSELIEKGI DNLIHTLIEE SVIVLVIIAI FLLHFRSALV VIITLPLSVC ISFLLMRYFN IEASIMSLGG IAIAIGAMVD AAIVMVENAH KHLQHIDVKD NAQRVNGIIE GVKHVGGAIF FALMIIVVSF LPIFALTGQE EKLFAPLAYT KTFAMLVGAL LSITMVPILM VWLIKGRILE ESKNPINAFF MKIYGVSLNV VLKFRYAFLI ASVLGLGGLY VAYKKLNWEF IPQINEGVVM YMPVTINGVS IDTALEYLKK SNSAIKRLDF VKQVFGKVGR ANTSTDAAGL SMIETYIELK PQNEWKEKLS YKEVRDKLEK TLQLKGLTNS WTYPIRGRTD MLLTGIRTPL GIKLYGNDTD KLQELAILME QQLKTLKESL SVFAERSNNG YYITLDLNDE NLARYGINKK AVLDAIKFAL GGATLTTMIK GVENYPISLR LEDTERNTIE KLKNLYIKTA YNYMPLRELA RIYYDNSPAV LKSEKGLNVN FIYIVPQNGI SSDAYRQLAQ KALEKIQLPN GYYYEFSGES QYLEEAFKTL QYIVPVSVFI IFILIVFALK NLTNSLLCFF TLPFAFLGGL IFMNLMGFNM SVAALVGFLA LLGVASETAI VMIIYLEDAF QKFIKTPLKE QNSTTLKEAI MHGAVLRVRP KLMTFFSILA SLIPIMYSHG TGSEIMKSIA APMLGGMISS VVLTLFIIPT AYFVIKNAGI KSNQT // ID O25596_HELPY Unreviewed; 450 AA. AC O25596; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 91. DE SubName: Full=D-alanine glycine permease (DagA) {ECO:0000313|EMBL:AAD07987.1}; GN OrderedLocusNames=HP_0942 {ECO:0000313|EMBL:AAD07987.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07987.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07987.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000256|RuleBase:RU363064}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363064}. CC -!- SIMILARITY: Belongs to the sodium:alanine (SAF) symporter family. CC {ECO:0000256|RuleBase:RU363064}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07987.1; -; Genomic_DNA. DR PIR; F64637; F64637. DR RefSeq; NP_207734.1; NC_000915.1. DR RefSeq; WP_000447623.1; NC_018939.1. DR ProteinModelPortal; O25596; -. DR DIP; DIP-3476N; -. DR IntAct; O25596; 1. DR MINT; MINT-172031; -. DR STRING; 85962.HP0942; -. DR PaxDb; O25596; -. DR EnsemblBacteria; AAD07987; AAD07987; HP_0942. DR GeneID; 899471; -. DR KEGG; heo:C694_04850; -. DR KEGG; hpy:HP0942; -. DR PATRIC; 20593187; VBIHelPyl33062_0979. DR eggNOG; ENOG4105BZG; Bacteria. DR eggNOG; COG1115; LUCA. DR KO; K03310; -. DR OMA; FWMWVTG; -. DR OrthoDB; EOG6D2KVD; -. DR BioCyc; HPY:HP0942-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015655; F:alanine:sodium symporter activity; IEA:InterPro. DR InterPro; IPR001463; Na/Ala_symport. DR PANTHER; PTHR30330; PTHR30330; 1. DR Pfam; PF01235; Na_Ala_symp; 1. DR PRINTS; PR00175; NAALASMPORT. DR TIGRFAMs; TIGR00835; agcS; 1. PE 3: Inferred from homology; KW Cell inner membrane {ECO:0000256|RuleBase:RU363064}; KW Cell membrane {ECO:0000256|RuleBase:RU363064}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363064}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Symport {ECO:0000256|RuleBase:RU363064}; KW Transmembrane {ECO:0000256|RuleBase:RU363064}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363064}; KW Transport {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 14 35 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 66 90 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 96 117 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 138 158 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 178 196 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 208 229 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 249 271 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 296 321 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 346 373 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 393 414 Helical. {ECO:0000256|RuleBase:RU363064}. FT TRANSMEM 420 437 Helical. {ECO:0000256|RuleBase:RU363064}. SQ SEQUENCE 450 AA; 48726 MW; 76471D8A710F1A30 CRC64; METIDSVVRL LSNLVWGIPM QILLVGTGLF LTFYLRGLQF SKIFYAIKIL FDKESQSKGD ISQFSALMLS LGATVGIGSI VGVATAISIA GPGAVFWMWV TGLVGMATKY SEGILAVKYR EKGAFGYNGG PMYYIKNGLN MPKLAMAFAI FTIIASIGTG NMTQSNAVSS ILSEQANLPN WVSGLLLTLL TAFIVIGGIK SIGKFTSYLA PVMVLLYLIA IIYIIVSHFD LALQAIKLIF EEAFNPKPVV GGASGALIAT MIKTGVARGL YSNEAGLGSS AIIAASAQTR HPVRQALVSM LQTFIVTLIV CSATASVILM APEYNTLLPN GEKLSANLLT LKSTEYFLGS LGTVVIFTTM IFFAYSTIIG WAYYGEKCTE YAFGEKKVKY YRLIFLASVM VGAMAKIDFV WNLADLSNGL MAIPNLIALI LLHKVVYSET RWYFSKHSNK // ID O25206_HELPY Unreviewed; 858 AA. AC O25206; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 81. DE SubName: Full=VirB4 homolog (VirB4) {ECO:0000313|EMBL:AAD07523.1}; GN OrderedLocusNames=HP_0459 {ECO:0000313|EMBL:AAD07523.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07523.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07523.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07523.1; -; Genomic_DNA. DR PIR; C64577; C64577. DR RefSeq; NP_207257.1; NC_000915.1. DR RefSeq; WP_000893960.1; NC_018939.1. DR ProteinModelPortal; O25206; -. DR DIP; DIP-3573N; -. DR IntAct; O25206; 1. DR MINT; MINT-185192; -. DR STRING; 85962.HP0459; -. DR PaxDb; O25206; -. DR EnsemblBacteria; AAD07523; AAD07523; HP_0459. DR GeneID; 900245; -. DR KEGG; heo:C694_02345; -. DR KEGG; hpy:HP0459; -. DR PATRIC; 20592185; VBIHelPyl33062_0481. DR eggNOG; COG3451; LUCA. DR KO; K12053; -. DR OMA; KDLEGYF; -. DR OrthoDB; EOG6X6R8H; -. DR BioCyc; HPY:HP0459-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR004346; CagE_TrbE_VirB. DR InterPro; IPR018145; CagE_TrbE_VirB_cntrl_dom. DR InterPro; IPR002543; FtsK_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF03135; CagE_TrbE_VirB; 1. DR Pfam; PF01580; FtsK_SpoIIIE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00929; VirB4_CagE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 214 412 CagE_TrbE_VirB. FT {ECO:0000259|Pfam:PF03135}. SQ SEQUENCE 858 AA; 98510 MW; 870F9F95959CCBD1 CRC64; MLESALKYCK EKAIDLLVGF VPKTYSMAQE CNILGLYDDA FIITKQENLV GIISLQGLSY SNLMQKDLEG YFDARQNVLN TISKDIQLRI VAKRRKEFIN QSPNIDNIYA KAIITQFESK GIYKTEYFLV FETITSNVKS FFEKKKLEMT TSINEELEES SKEDKQENEN SSNETHSNTS SKKDKKNKFK KKITFSTKSK RALLIQTIER VKNALKEFKP TLLNSKEVLN FYAEYINGKY IAFNPKLKRL SDSYIASNVH FKKDYFVIEF QNQNTFCACV GIKAYESEEI SSLPISTLLH TQIELDLIFH IRSLGQFESL NFLKTKKKLT LSKIVKADID NYIELVQANR LSMQECALNL VIRAKSKAKL DKSLKEILSL LNNAGLGSVT ETIGLKPSYF SFFPNNANIN PRMRHQTSQV IASLILFEKN NTGFRANSWG DMPLSVFKNL DHSPYLFNFH NQEVKHKGVL AHNVARVVGH TMIIGATGAG KTTLISYLMM SALKYSNIDI LALDRLNGLY SFTKYFDGIY NQGENFHINP FSLEDSATNR AFLLHFYAQM AKVDSYDDHK DKVEDRTALL NAIDTMYRNY NDEVKQAKFS NQELPLPFDL KEFVNAIAKT NTDILDSSFE DYLKSSLFSS RMDSLDFKTR ISTINTDSIL HNDDDAGLLA YYVFHKMIDR ALKINRGFLC FIDEFKSYAQ NEMMNKKINE IITQARKANG VIVLALQDIN QLSEVRNAQS FIKNMGQLIL YPQRNIDTKD LNDKFGIRLS DTEKHFLENT AVNEYKVLLK NMNDGSSNII DVSLSSLGNY LQIFSSNSSM VEHIDNLIKH YPKTWREVFV SNKHENFDDK KHLEKVLK // ID O25100_HELPY Unreviewed; 270 AA. AC O25100; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 71. DE SubName: Full=DNA processing chain A (DprA) {ECO:0000313|EMBL:AAD07402.1}; GN OrderedLocusNames=HP_0333 {ECO:0000313|EMBL:AAD07402.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07402.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07402.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4LJK, ECO:0000213|PDB:4LJL, ECO:0000213|PDB:4LJR} RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 5-217. RX PubMed=24369431; DOI=10.1093/nar/gkt1334; RA Wang W., Ding J., Zhang Y., Hu Y., Wang D.C.; RT "Structural insights into the unique single-stranded DNA-binding mode RT of Helicobacter pylori DprA."; RL Nucleic Acids Res. 42:3478-3491(2014). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07402.1; -; Genomic_DNA. DR PIR; E64561; E64561. DR RefSeq; NP_207131.1; NC_000915.1. DR RefSeq; WP_001076175.1; NC_000915.1. DR PDB; 4LJK; X-ray; 2.35 A; A/B/C/D/E/F/G/H=5-225. DR PDB; 4LJL; X-ray; 2.20 A; A/B=5-225. DR PDB; 4LJR; X-ray; 1.80 A; A/B=5-217. DR PDBsum; 4LJK; -. DR PDBsum; 4LJL; -. DR PDBsum; 4LJR; -. DR ProteinModelPortal; O25100; -. DR STRING; 85962.HP0333; -. DR PaxDb; O25100; -. DR PRIDE; O25100; -. DR DNASU; 900099; -. DR EnsemblBacteria; AAD07402; AAD07402; HP_0333. DR GeneID; 900099; -. DR KEGG; hpy:HP0333; -. DR PATRIC; 20591901; VBIHelPyl33062_0347. DR eggNOG; ENOG4105C79; Bacteria. DR eggNOG; COG0758; LUCA. DR KO; K04096; -. DR OMA; HLKEMPE; -. DR OrthoDB; EOG6DG2TK; -. DR BioCyc; HPY:HP0333-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009294; P:DNA mediated transformation; IEA:InterPro. DR InterPro; IPR003488; DprA. DR Pfam; PF02481; DNA_processg_A; 1. DR TIGRFAMs; TIGR00732; dprA; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4LJK, ECO:0000213|PDB:4LJL, KW ECO:0000213|PDB:4LJR}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 270 AA; 30470 MW; 5211BDC3F20A844C CRC64; MNQRMKSHFQ YSTLENIPKA FDILKDPPKK LYCVGDTKLL DTPLKVAIIG TRRPTPYSKQ HTITLARELA KNGAVIVSGG ALGVDIIAQE NALPKTIMLS PCSLDFIYPT NNHKVIQEIA QNGLILSEYE KDFMPIKGSF LARNRLVIAL SDVVIIPQAD LKSGSMSSAR LAQKYQKPLF VLPQRLNESD GTNELLEKGQ AQGIFNIQNF INTLLKDYHL KEMPEMEDEF LEYCAKNPSY EEAYLKFGDK LLEYELLGKI KRINHIVVLA // ID O25284_HELPY Unreviewed; 412 AA. AC O25284; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 108. DE RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; DE EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447}; GN OrderedLocusNames=HP_0558 {ECO:0000313|EMBL:AAD07625.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07625.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07625.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the condensation reaction of fatty acid CC synthesis by the addition to an acyl acceptor of two carbons from CC malonyl-ACP. {ECO:0000256|PIRNR:PIRNR000447}. CC -!- CATALYTIC ACTIVITY: (Z)-hexadec-11-enoyl-[acyl-carrier-protein] + CC malonyl-[acyl-carrier-protein] = (Z)-3-oxooctadec-13-enoyl-[acyl- CC carrier-protein] + CO(2) + [acyl-carrier-protein]. CC {ECO:0000256|PIRNR:PIRNR000447}. CC -!- PATHWAY: Lipid metabolism; fatty acid biosynthesis. CC {ECO:0000256|PIRNR:PIRNR000447}. CC -!- SIMILARITY: Belongs to the beta-ketoacyl-ACP synthases family. CC {ECO:0000256|RuleBase:RU003694}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07625.1; -; Genomic_DNA. DR PIR; F64589; F64589. DR RefSeq; NP_207353.1; NC_000915.1. DR RefSeq; WP_001252848.1; NC_018939.1. DR ProteinModelPortal; O25284; -. DR DIP; DIP-3484N; -. DR IntAct; O25284; 1. DR MINT; MINT-161588; -. DR STRING; 85962.HP0558; -. DR PaxDb; O25284; -. DR EnsemblBacteria; AAD07625; AAD07625; HP_0558. DR GeneID; 898935; -. DR KEGG; heo:C694_02880; -. DR KEGG; hpy:HP0558; -. DR PATRIC; 20592391; VBIHelPyl33062_0584. DR eggNOG; ENOG4105C0Q; Bacteria. DR eggNOG; COG0304; LUCA. DR KO; K09458; -. DR OMA; FEVEQYL; -. DR OrthoDB; EOG6DG2SR; -. DR BioCyc; HPY:HP0558-MONOMER; -. DR UniPathway; UPA00094; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0033817; F:beta-ketoacyl-acyl-carrier-protein synthase II activity; IEA:UniProtKB-EC. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.47.10; -; 2. DR InterPro; IPR017568; 3-oxoacyl-ACP_synth-2. DR InterPro; IPR014031; Ketoacyl_synth_C. DR InterPro; IPR014030; Ketoacyl_synth_N. DR InterPro; IPR020841; PKS_Beta-ketoAc_synthase_dom. DR InterPro; IPR016039; Thiolase-like. DR Pfam; PF00109; ketoacyl-synt; 1. DR Pfam; PF02801; Ketoacyl-synt_C; 1. DR PIRSF; PIRSF000447; KAS_II; 1. DR SMART; SM00825; PKS_KS; 1. DR SUPFAM; SSF53901; SSF53901; 2. DR TIGRFAMs; TIGR03150; fabF; 1. PE 3: Inferred from homology; KW Acyltransferase {ECO:0000256|PIRNR:PIRNR000447}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Fatty acid biosynthesis {ECO:0000256|PIRNR:PIRNR000447}; KW Fatty acid metabolism {ECO:0000256|PIRNR:PIRNR000447}; KW Lipid biosynthesis {ECO:0000256|PIRNR:PIRNR000447}; KW Lipid metabolism {ECO:0000256|PIRNR:PIRNR000447}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|PIRNR:PIRNR000447}. SQ SEQUENCE 412 AA; 43564 MW; AE5E041F1D0B9B0E CRC64; MRRIVVTGMG MINSLGLNKE DSFLAIAKGE CGIKHIESFD ASAFPVRIAG EITDFDPTEV MNPKDVKKAG RFIQLALKAT REAMKDSGIL DAHNRCPEEL ANRMGVSSGS GIGGLGNIEA NSIFCFEKGP RKVNPFFITS ALVNMIGGFT SIEFGIKGPN LSSVTACAAG THAIIEAVKT ILLNGADKML VVGAESTICP VGIGGFASIK ALSTRNDDPK KASRPFDKDR NGFVMGEGAG ALVLEEYESA KRRGAKIYAE FAGYGESGDA NHITAPAPEG EGAFRAMKMA LEMAKVEIGY VNAHGTSTHY NDLYESIALK NVFGSKEKVP PVSSTKGQIG HCLGAAGALE AVISIMAMNQ GILPPTINQE MPDPECDLDY IPNAAREKRV DAVMSNSFGF GGTNGVVIFK KA // ID O25803_HELPY Unreviewed; 93 AA. AC O25803; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 75. DE SubName: Full=Secreted protein involved in flagellar motility {ECO:0000313|EMBL:AAD08238.1}; GN OrderedLocusNames=HP_1192 {ECO:0000313|EMBL:AAD08238.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08238.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08238.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08238.1; -; Genomic_DNA. DR PIR; H64668; H64668. DR RefSeq; NP_207983.1; NC_000915.1. DR RefSeq; WP_000744184.1; NC_018939.1. DR ProteinModelPortal; O25803; -. DR IntAct; O25803; 2. DR STRING; 85962.HP1192; -. DR PaxDb; O25803; -. DR EnsemblBacteria; AAD08238; AAD08238; HP_1192. DR GeneID; 899954; -. DR KEGG; heo:C694_06170; -. DR KEGG; hpy:HP1192; -. DR PATRIC; 20593743; VBIHelPyl33062_1249. DR OrthoDB; EOG6MD97Z; -. DR BioCyc; HPY:HP1192-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. PE 4: Predicted; KW Cell projection {ECO:0000313|EMBL:AAD08238.1}; KW Cilium {ECO:0000313|EMBL:AAD08238.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08238.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 93 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158584. SQ SEQUENCE 93 AA; 10282 MW; 4A0E11725E631ECC CRC64; MKKQILTGVL LSVLAVSSAY AHKDKKDAKK PKFSTELVVA QNDKKDAKKP KFSTELVVAQ NDKKDAKKPK FSTELVVAQN DKKDAKKPKN SVV // ID O24906_HELPY Unreviewed; 831 AA. AC O24906; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 98. DE SubName: Full=Conserved hypothetical ATP-binding protein {ECO:0000313|EMBL:AAD07129.1}; GN OrderedLocusNames=HP_0066 {ECO:0000313|EMBL:AAD07129.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07129.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07129.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07129.1; -; Genomic_DNA. DR PIR; B64528; B64528. DR RefSeq; NP_206866.1; NC_000915.1. DR RefSeq; WP_010875439.1; NC_000915.1. DR ProteinModelPortal; O24906; -. DR DIP; DIP-3103N; -. DR IntAct; O24906; 7. DR MINT; MINT-167167; -. DR STRING; 85962.HP0066; -. DR PaxDb; O24906; -. DR PRIDE; O24906; -. DR EnsemblBacteria; AAD07129; AAD07129; HP_0066. DR GeneID; 898961; -. DR KEGG; hpy:HP0066; -. DR PATRIC; 20591333; VBIHelPyl33062_0068. DR eggNOG; ENOG4105EC2; Bacteria. DR eggNOG; COG1674; LUCA. DR OMA; EKFWTES; -. DR OrthoDB; EOG6S52GD; -. DR BioCyc; HPY:HP0066-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002543; FtsK_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01580; FtsK_SpoIIIE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50901; FTSK; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|SAAS:SAAS00514327, KW ECO:0000313|EMBL:AAD07129.1}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00514327, KW ECO:0000313|EMBL:AAD07129.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 355 547 FtsK. {ECO:0000259|PROSITE:PS50901}. FT COILED 306 333 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 831 AA; 95647 MW; F674CBA4A82AF587 CRC64; MKPKSMKEKL VKDMMSILNL RIKMIDVNGL LKELDDALDK VVAKKEPESF LKPIISPIED YQKSVRQIQA QFTDAPKFNE EGAYPQFLSC GLLEIKGKNG ASMEFCLPKV YPFPPKSLYI EHEKDGQFLR EMLMRLLSSA PLVQLEVILV DALSLGGIFN LARRLLHKDN DFIYQQRILT ESKEIEEALK HLYEYLKVNL QEKLAGYKDF AHYNEEKKDR LPLKALFLSG VDALSQNALY YLEKIMRFGS KNGVLSFVNL ESEKNNKSTE DLKRYAECFK DRTSFERLKY LNIEVINDHG IQSKHMKDFA DKIKAYYEKK KAVKRELKDL QKDEKFWTES SQFKVSVPVG WDINHKEVCF EIGNEQNHTL ICGRSGSGKS NFLHVLIQNL AFYYAPNEVQ LFLLDYKEGV EFNAYTDPNI LEHARLVSVA SSVGYGMSFL NWLCKEMQER ANLFKQFNVK DLSDYRKHGE IPRLIVVIDE FQVLFSDNKS TKAVEGHLNT LLKKGRSYGV HLILATQTMR GTDINRSIMA QIANRIALSM DAEDSNSILG DDAACELVRP EGIFNNNGGH QKHHTKMSIP KAPDDFKPFI KKIHRDFNQR NLVPVEHKIY NGEKPLEMPN TLKANEMRLH LGKEADYEQK DLMVGFENSE SHLLVVSQDL SARIALMKLF AQNFKTANKE LLFYNAEKRL ARELDELKKH HITPMQGPLG SVLDTAMNPN SVLVIDNLNE AKELHDKIGV EKLRSFLEKA TDNEQYCIIF AHDLKQIQAN YDLSKLKELL NNHFKQRLAF RCNGENLSAI KKDLPLLTNE LNALFVELSK DSHTEFRPFS L // ID O25593_HELPY Unreviewed; 237 AA. AC O25593; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 106. DE SubName: Full=Amino acid ABC transporter, permease protein (YckJ) {ECO:0000313|EMBL:AAD07984.1}; GN OrderedLocusNames=HP_0939 {ECO:0000313|EMBL:AAD07984.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07984.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07984.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032, CC ECO:0000256|SAAS:SAAS00561696}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07984.1; -; Genomic_DNA. DR PIR; C64637; C64637. DR RefSeq; NP_207731.1; NC_000915.1. DR RefSeq; WP_001862939.1; NC_018939.1. DR ProteinModelPortal; O25593; -. DR STRING; 85962.HP0939; -. DR PaxDb; O25593; -. DR EnsemblBacteria; AAD07984; AAD07984; HP_0939. DR GeneID; 899468; -. DR KEGG; heo:C694_04835; -. DR KEGG; hpy:HP0939; -. DR PATRIC; 20593181; VBIHelPyl33062_0976. DR eggNOG; ENOG4105DRP; Bacteria. DR eggNOG; COG0765; LUCA. DR KO; K10009; -. DR OMA; KNEESHH; -. DR OrthoDB; EOG6MM1R5; -. DR BioCyc; HPY:HP0939-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR010065; AA_ABC_transptr_permease_3TM. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR01726; HEQRo_perm_3TM; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|SAAS:SAAS00450258}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450258, ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00450217}. FT TRANSMEM 31 60 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 72 100 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 106 125 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 210 228 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 36 229 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 237 AA; 26351 MW; EB3FA49863394A27 CRC64; MSASPNLSLF FESLDLSKER LELLLEAFYP MLKAAFCISL PLAIISFILG LCIAVFVALI KIAPPKHFIH KALLAGVNFY VSIIRGTPLL VQIVVVFYGL PALGVYMDPI PAGIIAFSFN VGAYASETLR ASFLSVPKDQ WDSSLSLGLN YLQTFWHVIF FQALKVATPS LSNTFISLFK ETSLASVVTI AEVFRIAQQK ANASYDFLPI YLEAALIYWL FCLVLEVIQK RVEKILN // ID O25957_HELPY Unreviewed; 292 AA. AC O25957; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 103. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08449.1}; GN OrderedLocusNames=HP_1407 {ECO:0000313|EMBL:AAD08449.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08449.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08449.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000256|SAAS:SAAS00038166}; Multi-pass membrane protein CC {ECO:0000256|SAAS:SAAS00038166}. CC -!- SIMILARITY: Belongs to the UPF0761 family. CC {ECO:0000256|SAAS:SAAS00549261}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08449.1; -; Genomic_DNA. DR PIR; G64695; G64695. DR RefSeq; NP_208198.1; NC_000915.1. DR RefSeq; WP_001208606.1; NC_018939.1. DR ProteinModelPortal; O25957; -. DR IntAct; O25957; 1. DR STRING; 85962.HP1407; -. DR PaxDb; O25957; -. DR DNASU; 899889; -. DR EnsemblBacteria; AAD08449; AAD08449; HP_1407. DR GeneID; 899889; -. DR KEGG; heo:C694_07275; -. DR KEGG; hpy:HP1407; -. DR PATRIC; 20594203; VBIHelPyl33062_1472. DR eggNOG; ENOG4107YBA; Bacteria. DR eggNOG; COG1295; LUCA. DR KO; K07058; -. DR OMA; FLMSWVY; -. DR OrthoDB; EOG63NMKT; -. DR BioCyc; HPY:HP1407-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR InterPro; IPR017039; Virul_fac_BrkB. DR Pfam; PF03631; Virul_fac_BrkB; 1. DR PIRSF; PIRSF035875; RNase_BN; 1. DR TIGRFAMs; TIGR00765; yihY_not_rbn; 1. PE 3: Inferred from homology; KW Cell inner membrane {ECO:0000256|SAAS:SAAS00434739}; KW Cell membrane {ECO:0000256|SAAS:SAAS00434739}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAAS:SAAS00434734, KW ECO:0000256|SAAS:SAAS00434739, ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAAS:SAAS00434734, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00434734, KW ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 162 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 182 200 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 207 227 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 269 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 292 AA; 34604 MW; 5D85D56418FE4EB5 CRC64; MRELFKSVRG FFRLLRMIFP KRLKNAFLGL SELFYYASSL SFYTILSLSP ILLFVFSLFV SHYLQAHSGE MEALIFPNAP KLIGAIKDFL ENFKKTDMTL GTLEEVSIVV ALVLFCENYR SIASKIFQAK PRDYAHFKGK EIFLFWGFGT TLVFLFALPL VVFFDIKIQV FFEDKNSNLL HVLRWIGTYA FFLILFTIPT NKVFKHYFWV FLWVFFTSVS WHVLKWAFTY YVLYNRTYHE LYGSVSILWF LMSWVYVSWL VILIGMYGCK VCDAFDPKEV FKKFLGFFKK ET // ID O25163_HELPY Unreviewed; 796 AA. AC O25163; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 102. DE SubName: Full=Biotin sulfoxide reductase (BisC) {ECO:0000313|EMBL:AAD07475.1}; GN OrderedLocusNames=HP_0407 {ECO:0000313|EMBL:AAD07475.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07475.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07475.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the prokaryotic molybdopterin-containing CC oxidoreductase family. {ECO:0000256|SAAS:SAAS00566100}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07475.1; -; Genomic_DNA. DR PIR; G64570; G64570. DR RefSeq; NP_207205.1; NC_000915.1. DR RefSeq; WP_000028305.1; NC_018939.1. DR ProteinModelPortal; O25163; -. DR DIP; DIP-3564N; -. DR IntAct; O25163; 2. DR MINT; MINT-162921; -. DR STRING; 85962.HP0407; -. DR PaxDb; O25163; -. DR EnsemblBacteria; AAD07475; AAD07475; HP_0407. DR GeneID; 900082; -. DR KEGG; heo:C694_02070; -. DR KEGG; hpy:HP0407; -. DR PATRIC; 20592055; VBIHelPyl33062_0421. DR eggNOG; ENOG4108J2R; Bacteria. DR eggNOG; COG0243; LUCA. DR KO; K07812; -. DR OMA; RVRNPRC; -. DR OrthoDB; EOG6NWBKD; -. DR BioCyc; HPY:HP0407-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0030151; F:molybdenum ion binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR InterPro; IPR009010; Asp_de-COase-like_dom. DR InterPro; IPR006658; BisC. DR InterPro; IPR006657; MoPterin_dinucl-bd_dom. DR InterPro; IPR006656; Mopterin_OxRdtase. DR InterPro; IPR006655; Mopterin_OxRdtase_prok_CS. DR Pfam; PF00384; Molybdopterin; 1. DR Pfam; PF01568; Molydop_binding; 1. DR SUPFAM; SSF50692; SSF50692; 1. DR TIGRFAMs; TIGR00509; bisC_fam; 1. DR PROSITE; PS00932; MOLYBDOPTERIN_PROK_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000256|SAAS:SAAS00456138}; KW Oxidoreductase {ECO:0000256|SAAS:SAAS00454529}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 80 532 Molybdopterin. FT {ECO:0000259|Pfam:PF00384}. FT DOMAIN 649 768 Molydop_binding. FT {ECO:0000259|Pfam:PF01568}. SQ SEQUENCE 796 AA; 90071 MW; E807BF36459CDA01 CRC64; MSISRRSILT KIPIALASAN VLKAVGVFEK VESIPHATHF GPFIAKVQNG VIKDIVPQKS DYNPTMMLKA MVDRVYSDSR VKYPCVRKSF LENKKNHKEL RGREEFVRVS WDVALDLAAK KLKEIPKENI YNASYGGWGH AGSLHRCHHL AWRFFNTTLG GAIGTDGEYS NGAAARINPM IVGDMEVYSQ QTTHEEMIKN CKVYVMWGAD LLKCNRIDYF VPNHVNDSYY PKYKRAGIKF ISIDPIYTET AQAFSAEWIP IRPNTDVALM LGMMHYLYTS NQYDKAFIAK YTDGFDKFLP YLLGESDNAP KTLEWASQIT GVSAEKIKEL ADLFVSKRTF LAGNWAMQRA QYGEQPDWAL IVLASMIGQV GLSGGGFGFS MHYGGNAQAS SGARIVPMIS QGHNSVKSVI PASRVSEAIL NPDKEIDFMG KKLKLPKIKM IYNCGADLLG HETDTNELIR ALRTLDCVIV HEPWWTPTAK FADIVFASTS TVERDDIAFG GSYSKNVVYA MRKVVEPVYE SKDDYEIFRQ LALRIGGNET EQKFTESKSY MEWIKGLYEK SDGPTLKSFD QFWRDGFVEF EIPENARKFV RHAKFRQDPI NNKLDTESGK IQIFSQKCAD FKLADFKGHP TWFEPAEWLG SKMAEIYPFH LISPHPKYRV NSQLDNTWVR NVYKIQGREP VMINELDANK LGIRHGEIVE VFNARGRLLA GAFVTKNIRQ GVLSIQKGAW YDPEDERVRN PRCNAGHVNT LTSLRPTSSM TQAISANTAL VNIRRLRRYE LVKPYHSIST PSIIGA // ID O25072_HELPY Unreviewed; 287 AA. AC O25072; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 114. DE SubName: Full=Dipeptide ABC transporter, ATP-binding protein (DppD) {ECO:0000313|EMBL:AAD07370.1}; GN OrderedLocusNames=HP_0301 {ECO:0000313|EMBL:AAD07370.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07370.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07370.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. CC {ECO:0000256|SAAS:SAAS00555009}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07370.1; -; Genomic_DNA. DR PIR; E64557; E64557. DR RefSeq; NP_207099.1; NC_000915.1. DR RefSeq; WP_000599885.1; NC_018939.1. DR ProteinModelPortal; O25072; -. DR STRING; 85962.HP0301; -. DR PaxDb; O25072; -. DR EnsemblBacteria; AAD07370; AAD07370; HP_0301. DR GeneID; 899061; -. DR KEGG; heo:C694_01520; -. DR KEGG; hpy:HP0301; -. DR PATRIC; 20591829; VBIHelPyl33062_0312. DR eggNOG; ENOG4105C3U; Bacteria. DR eggNOG; COG0444; LUCA. DR KO; K12371; -. DR OMA; SMPSMNT; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0301-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0015833; P:peptide transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013563; Oligopep_ABC_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF08352; oligo_HPY; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07370.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000256|SAAS:SAAS00554975, ECO:0000313|EMBL:AAD07370.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transport {ECO:0000256|SAAS:SAAS00554993}. FT DOMAIN 3 255 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 287 AA; 32242 MW; CA948BE951BAC186 CRC64; MILEVKDLKT YFFTDKGVNK AVDGVSFGLK KSQTLCIVGE SGSGKSITSL SILGLIEKPG QIVGGSIQFL GQDLLQLKEK QMQKEIRGKK IGMIFQEPMT SLNPSYTVGF QINEVLKIHH PNLNKKERLE RVVYELERVG IPHAGDKYHE YPFNLSGGQR QRVMIAMAMV CEPEILIADE PTTALDVTIQ AQILELMKEL QQKKGTSILF ITHDLGVVAQ IADEVVVMYK GHVVEQASAK ELFADPRHPY TKALLSAIPK PGKEYRKKRL ETVDENVDYL SFQKELR // ID O26085_HELPY Unreviewed; 588 AA. AC O26085; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE SubName: Full=Penicillin-binding protein 2 (Pbp2) {ECO:0000313|EMBL:AAD08605.1}; GN OrderedLocusNames=HP_1565 {ECO:0000313|EMBL:AAD08605.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08605.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08605.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08605.1; -; Genomic_DNA. DR PIR; E64715; E64715. DR RefSeq; NP_208356.1; NC_000915.1. DR RefSeq; WP_000793647.1; NC_018939.1. DR ProteinModelPortal; O26085; -. DR STRING; 85962.HP1565; -. DR PaxDb; O26085; -. DR EnsemblBacteria; AAD08605; AAD08605; HP_1565. DR GeneID; 899726; -. DR KEGG; heo:C694_08110; -. DR KEGG; hpy:HP1565; -. DR PATRIC; 20594557; VBIHelPyl33062_1646. DR eggNOG; ENOG4105CJN; Bacteria. DR eggNOG; COG0768; LUCA. DR KO; K05515; -. DR OMA; GYKIMRV; -. DR OrthoDB; EOG6N0HHV; -. DR BioCyc; HPY:HP1565-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0008658; F:penicillin binding; IEA:InterPro. DR Gene3D; 3.40.710.10; -; 1. DR InterPro; IPR012338; Beta-lactam/transpept-like. DR InterPro; IPR005311; PBP_dimer. DR InterPro; IPR001460; PCN-bd_Tpept. DR InterPro; IPR017790; Penicillin-binding_protein_2. DR Pfam; PF03717; PBP_dimer; 1. DR Pfam; PF00905; Transpeptidase; 1. DR SUPFAM; SSF56519; SSF56519; 1. DR SUPFAM; SSF56601; SSF56601; 1. DR TIGRFAMs; TIGR03423; pbp2_mrdA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 51 220 PBP_dimer. {ECO:0000259|Pfam:PF03717}. FT DOMAIN 252 572 Transpeptidase. FT {ECO:0000259|Pfam:PF00905}. SQ SEQUENCE 588 AA; 66803 MW; D9FCBB84B46863DF CRC64; MKNLRYKLLL FVFIGFWGLL ALNLFILSVK NQEYYEKLAE RNMTKKEFLV PTRGNITDRN DEFLATNELV FGVFLPSGLK QKDLLEKIEI IQKFFPNFSK ETLLNNYQKE NSLYNHNLIK VVGFIPYATM QPLYAKLIQT QGIFALPLDK RYYPNNALAS HVLGYVGVAS LQDLKDDEEN QYSQIVGKTG IEKEYNKLLQ GKVGYKIMRV NALNQELATL EVVLPSTNNH LQLSLDKRLQ KEADKLFENK RGAILVMDAE NGELLVAGSY PEYNLNDFVG GISQDKWQKL QDDIYNPLLN RFANALYPPG SVVKMGVGLS FLENLHITEN TTIPTPPFIE VGKHKFRDWK KTGHGNSNLY KAIRESVDVY FYKFGLEISI EKLSKTLREV GFGEKTGVDL PNEFVGIVPD NLWKLKRFNQ DWRVGDTLIT AIGQGSFLAT PLQVLAYTGL IATGKLATPH FAINNKQPLK DPLNSFQKKK LQALRVGMYE VCNHKDGTAY HSTRGSKITL ACKTGTAQVV EIAQNIVNRM KEKDMEYFHR SHAWITAFLP YEKPKYAITI LVEHGEGGSK LGGLLVKMSN KLYELGYL // ID O25569_HELPY Unreviewed; 675 AA. AC O25569; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 104. DE RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00553569}; DE EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00553569}; GN OrderedLocusNames=HP_0911 {ECO:0000313|EMBL:AAD07956.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07956.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07956.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000256|SAAS:SAAS00553768}. CC -!- SIMILARITY: Belongs to the helicase family. UvrD subfamily. CC {ECO:0000256|SAAS:SAAS00597767}. CC -!- SIMILARITY: Contains uvrD-like helicase ATP-binding domain. CC {ECO:0000256|SAAS:SAAS00553567}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07956.1; -; Genomic_DNA. DR PIR; G64633; G64633. DR RefSeq; NP_207703.1; NC_000915.1. DR RefSeq; WP_000894570.1; NC_018939.1. DR ProteinModelPortal; O25569; -. DR STRING; 85962.HP0911; -. DR PaxDb; O25569; -. DR EnsemblBacteria; AAD07956; AAD07956; HP_0911. DR GeneID; 899440; -. DR KEGG; heo:C694_04690; -. DR KEGG; hpy:HP0911; -. DR PATRIC; 20593123; VBIHelPyl33062_0947. DR eggNOG; ENOG4107PJ9; Bacteria. DR eggNOG; COG0210; LUCA. DR KO; K03657; -. DR OMA; KKHNYID; -. DR OrthoDB; EOG64N9TW; -. DR BioCyc; HPY:HP0911-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 4. DR InterPro; IPR014017; DNA_helicase_UvrD-like_C. DR InterPro; IPR000212; DNA_helicase_UvrD/REP. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014016; UvrD-like_ATP-bd. DR PANTHER; PTHR11070; PTHR11070; 2. DR Pfam; PF00580; UvrD-helicase; 1. DR Pfam; PF13361; UvrD_C; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1. DR PROSITE; PS51217; UVRD_HELICASE_CTER; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD07956.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Helicase {ECO:0000256|SAAS:SAAS00493105, ECO:0000313|EMBL:AAD07956.1}; KW Hydrolase {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD07956.1}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00493105, KW ECO:0000313|EMBL:AAD07956.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 275 UvrD-like helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51198}. FT DOMAIN 276 594 UvrD-like helicase C-terminal. FT {ECO:0000259|PROSITE:PS51217}. SQ SEQUENCE 675 AA; 76718 MW; 961AE42B404BBAD1 CRC64; MLETLQLNPE QLKAAKALQG HNLIIASAGT GKTSTIVGRI LYLLDNGIKP EEILLLTFTN KASNEMIARV AKYFKSSSKI EAGTFHAVAY RYLKEHYPNL SLKQPKELRK LLESIVDTKN AIDDDKKPYT SQHLYALYSL YTNALKQEDF SAWLSNKNPE HTPYAALYEN ILEEFENTKK KHNYIDYNDL LLLFKKAMLE RPSPYKEVLC DEFQDTNPLQ ESILDAINPP SLFCVGDYDQ SIYAFNGADI SIISNFTQKY KNAQVFTLTK NYRSSKEILD LANQVIQHNE RIYPKNLEVV KSGKFNKPTL LNYNDNIAQC QDIAKRIVMR KDFKEVAVIF RNNASADQLE AALRSYNVPS KRKGSASFFE SKEVALALDI CVLIFNPKDI MAAIHILSYI SDIGSNTAKD IHEALMLLGN GDLKLALIQP NKEAKIYTKK KEITSMGLFE EIFALENSSR FNSVIDKAFH SHPVLMHPKI SLNGAKTLSD FFTLYTKAPT HSPSALIKHI LESAFFQTFK TRLLKERSKN KDGSYNEFKK LQAQKRFNEK MDLLSSLAKN YQNLGRFLNG TLIGSNEATQ GCGVNLLSVH ASKGLEFKDV YIIDLMEGRF PNHKLMNTGG GIEEERRLFY VAITRAKENL WLSYAKNELR ENAKPKEHKP SVFLYEAGLL KPDSK // ID O24897_HELPY Unreviewed; 1185 AA. AC O24897; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 105. DE RecName: Full=Bifunctional protein PutA {ECO:0000256|PIRNR:PIRNR000197}; GN OrderedLocusNames=HP_0056 {ECO:0000313|EMBL:AAD07126.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07126.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07126.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Oxidizes proline to glutamate for use as a carbon and CC nitrogen source. {ECO:0000256|PIRNR:PIRNR000197}. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000256|PIRNR:PIRNR000197}; CC -!- PATHWAY: Amino-acid degradation; L-proline degradation into L- CC glutamate; L-glutamate from L-proline: step 1/2. CC {ECO:0000256|PIRNR:PIRNR000197}. CC -!- PATHWAY: Amino-acid degradation; L-proline degradation into L- CC glutamate; L-glutamate from L-proline: step 2/2. CC {ECO:0000256|PIRNR:PIRNR000197}. CC -!- SIMILARITY: Belongs to the aldehyde dehydrogenase family. CC {ECO:0000256|RuleBase:RU003345}. CC -!- SIMILARITY: In the C-terminal section; belongs to the aldehyde CC dehydrogenase family. {ECO:0000256|PIRNR:PIRNR000197}. CC -!- SIMILARITY: In the N-terminal section; belongs to the proline CC dehydrogenase family. {ECO:0000256|PIRNR:PIRNR000197}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07126.1; -; Genomic_DNA. DR PIR; H64526; H64526. DR RefSeq; NP_206857.1; NC_000915.1. DR RefSeq; WP_001169304.1; NC_018939.1. DR ProteinModelPortal; O24897; -. DR DIP; DIP-3317N; -. DR IntAct; O24897; 7. DR MINT; MINT-182444; -. DR STRING; 85962.HP0056; -. DR PaxDb; O24897; -. DR EnsemblBacteria; AAD07126; AAD07126; HP_0056. DR GeneID; 900343; -. DR KEGG; heo:C694_00265; -. DR KEGG; hpy:HP0056; -. DR PATRIC; 20591313; VBIHelPyl33062_0058. DR eggNOG; ENOG4105C26; Bacteria. DR eggNOG; COG0506; LUCA. DR eggNOG; COG1012; LUCA. DR KO; K13821; -. DR OMA; RQPFGGW; -. DR OrthoDB; EOG6BS8QW; -. DR BioCyc; HPY:HP0056-MONOMER; -. DR UniPathway; UPA00261; UER00373. DR UniPathway; UPA00261; UER00374. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003842; F:1-pyrroline-5-carboxylate dehydrogenase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0016620; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0004657; F:proline dehydrogenase activity; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006561; P:proline biosynthetic process; IEA:UniProtKB-UniRule. DR GO; GO:0010133; P:proline catabolic process to glutamate; IEA:UniProtKB-UniPathway. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.220; -; 1. DR Gene3D; 3.40.309.10; -; 1. DR Gene3D; 3.40.605.10; -; 1. DR InterPro; IPR016161; Ald_DH/histidinol_DH. DR InterPro; IPR016163; Ald_DH_C. DR InterPro; IPR016160; Ald_DH_CS_CYS. DR InterPro; IPR029510; Ald_DH_CS_GLU. DR InterPro; IPR016162; Ald_DH_N. DR InterPro; IPR015590; Aldehyde_DH_dom. DR InterPro; IPR025703; Bifunct_PutA. DR InterPro; IPR029041; FAD-linked_oxidoreductase-like. DR InterPro; IPR002872; Proline_DH_dom. DR Pfam; PF00171; Aldedh; 1. DR Pfam; PF01619; Pro_dh; 1. DR PIRSF; PIRSF000197; Bifunct_PutA; 1. DR SUPFAM; SSF51730; SSF51730; 1. DR SUPFAM; SSF53720; SSF53720; 1. DR PROSITE; PS00070; ALDEHYDE_DEHYDR_CYS; 1. DR PROSITE; PS00687; ALDEHYDE_DEHYDR_GLU; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|PIRNR:PIRNR000197}; KW FAD {ECO:0000256|PIRNR:PIRNR000197}; KW Flavoprotein {ECO:0000256|PIRNR:PIRNR000197}; KW NAD {ECO:0000256|PIRNR:PIRNR000197}; KW Oxidoreductase {ECO:0000256|PIRNR:PIRNR000197}; KW Proline metabolism {ECO:0000256|PIRNR:PIRNR000197}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Repressor {ECO:0000256|PIRNR:PIRNR000197}; KW Transcription {ECO:0000256|PIRNR:PIRNR000197}; KW Transcription regulation {ECO:0000256|PIRNR:PIRNR000197}. FT DOMAIN 127 422 Pro_dh. {ECO:0000259|Pfam:PF01619}. FT DOMAIN 522 964 Aldedh. {ECO:0000259|Pfam:PF00171}. SQ SEQUENCE 1185 AA; 135138 MW; C9237DDC69234441 CRC64; MQKIIDDSLE LAKKLQDSIS NHLSDQEKAF HSKMQKLLNN PENKVMLIEL MDRSFRCLDN KARFEMIEHV LDKYKSREIF SPFEKVLLMG FLSFGKMLPD MSVPFFVNKI RSDTKAMVLD QEESQLKERI LKRKNEKIIL NVNFIGEEVL GEEEANARFE KYSQALKSNY IQYISIKITT IFSQINILDF EYSKKEIVKR LDALYALALE EEKKQGMPKF INLDMEEFRD LELTVESFME SIAKFDLNAG IVLQAYIPDS YEYLKKLHAF SKERVLKGLK PIKIRFVKGA NMESEETIAS VKDWALPTFS NKQDTDSNYN KMLDFVLEGD NYKYIHIGAA SHNIFEIAYV YTRIHAINDP VVLEHFSFEM LEGMSLQASQ ELKEMHKLIL YAPVCDEAHF NNAIAYLVRR LDENTSSDNF MKAFFNLKVG TSEWKDQEQR FLNSLKGIAT LDNATHRTQD RNAKQSGHTT YPNHSFKNES DTDFILKANR EWAKKVREKM RNAPILELYP EMDGRFEDPN LTPLEVFDRI HHKKIASVHL ADKEAILKAL EVAKSDKSRF SQKSFTEIHA LMSQTAQLFR ERRGDLIGIS ALEVGKTFAE TDAEVSEAID FLEFYPYSLR VLQEQNTKTQ FTPKGVGVVI APWNFPVGIS VGTIAAPLAT GNRVIYKPSS LSSVTGYKLC ECFWDAGVPR DALIYLPSKG SDISEHLLRD ESIQFAILTG GEDTAYKMLK ANPTLALSAE TGGKNATIVS KMADRDQAIK NVIHSAFSNS GQKCSATSLL VLEKEVYEDE NFKKTLIDAT LSLSVGDPFD FKNKIGALAD KPNEKVIKAI DELKSYENYE IPVSFVNDNP YLMKPSIKYG TKKGDFTHQT ELFTPILSVM EAKDLDEAIE IANSTGYGLT SALESLDERE WEYYLERIEA GNIYINKPTT GAIVLRQPFG GVKKSAVGFG RKVGIFNYIT QFVNICQEEE DENALKNPLS EALENLTQKG YDEHTHELKR AIFMAKSYAY HYKHEFSQTK DYVKIRGEDN LFSYTKVKSV GYRITEKDTL SDMLGVALAC LISQIPLTLS IENERTNKDL TFFLECLKAL QASAPIVYES LQKFSEKLNT FNRVRYLKSD LDLLHEQASA LGMVLATAKP CLNGRFELLY YHLERSVSIS YHRYGNLGSR VLRQPTCHKS CCAEK // ID O25530_HELPY Unreviewed; 330 AA. AC O25530; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 111. DE RecName: Full=ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|SAAS:SAAS00321187}; DE EC=5.1.3.20 {ECO:0000256|SAAS:SAAS00321196}; GN OrderedLocusNames=HP_0859 {ECO:0000313|EMBL:AAD07905.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07905.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07905.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the interconversion between ADP-D-glycero- CC beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an CC epimerization at carbon 6 of the heptose. CC {ECO:0000256|SAAS:SAAS00321182}. CC -!- CATALYTIC ACTIVITY: ADP-D-glycero-D-manno-heptose = ADP-L-glycero- CC D-manno-heptose. {ECO:0000256|SAAS:SAAS00321178}. CC -!- PATHWAY: Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D- CC manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose CC from D-glycero-beta-D-manno-heptose 7-phosphate: step 4/4. CC {ECO:0000256|SAAS:SAAS00321180}. CC -!- SUBUNIT: Homopentamer. {ECO:0000256|SAAS:SAAS00321194}. CC -!- SIMILARITY: Belongs to the NAD(P)-dependent epimerase/dehydratase CC family. HldD subfamily. {ECO:0000256|SAAS:SAAS00558018}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07905.1; -; Genomic_DNA. DR PIR; C64627; C64627. DR RefSeq; NP_207653.1; NC_000915.1. DR RefSeq; WP_001268933.1; NC_018939.1. DR ProteinModelPortal; O25530; -. DR STRING; 85962.HP0859; -. DR PaxDb; O25530; -. DR EnsemblBacteria; AAD07905; AAD07905; HP_0859. DR GeneID; 899388; -. DR KEGG; heo:C694_04400; -. DR KEGG; hpy:HP0859; -. DR PATRIC; 20593007; VBIHelPyl33062_0891. DR eggNOG; ENOG4105CUI; Bacteria. DR eggNOG; COG0451; LUCA. DR KO; K03274; -. DR OMA; IFKEQRA; -. DR OrthoDB; EOG6384GP; -. DR BioCyc; HPY:HP0859-MONOMER; -. DR BRENDA; 5.1.3.20; 2604. DR UniPathway; UPA00356; UER00440. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008712; F:ADP-glyceromanno-heptose 6-epimerase activity; IEA:UniProtKB-EC. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0097171; P:ADP-L-glycero-beta-D-manno-heptose biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IMP:CACAO. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR001509; Epimerase_deHydtase_N. DR InterPro; IPR011912; Heptose_epim. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01370; Epimerase; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR02197; heptose_epim; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism {ECO:0000256|SAAS:SAAS00444078}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Isomerase {ECO:0000256|SAAS:SAAS00444065}; KW NADP {ECO:0000256|SAAS:SAAS00444059}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 254 Epimerase. {ECO:0000259|Pfam:PF01370}. SQ SEQUENCE 330 AA; 37413 MW; C7556D033775B8CD CRC64; MRYIDDELEN QTILITGGAG FVGSNLAFYF QENHPKAKVI ILDKFRSNTL FSNKRPSSLG HFKNLIGFKG EVIAADINNP LDLRRLEKLH FDYLFHQAAV SDTTMLDQEL VMKTNYQAFL NLLEIARSKK AKVIYASSAG VYGNTKAPNV VGSNESPENV YGFSKLCMDE FVLSHSNDNV QVGLRYFNVY GPREFYKEKT ASMVLQLALG AMAFKEVKLF EFGEQLRDFV YIEDVIQASV KAMKAQKSGV YNVGYSQARS YNEIVSILKE HLGDFKVSYI KNPYAFFQKH TQAHIEPAIL DLDYTPLYDL ESGIKDYLPH IHAIFKGQCA // ID O26080_HELPY Unreviewed; 161 AA. AC O26080; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE RecName: Full=Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; GN OrderedLocusNames=HP_1558 {ECO:0000313|EMBL:AAD08598.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08598.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08598.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBUNIT: The basal body constitutes a major portion of the CC flagellar organelle and consists of four rings (L,P,S, and M) CC mounted on a central rod. The rod consists of about 26 subunits of CC FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to CC build up the proximal portion of the rod with about 6 subunits CC each. {ECO:0000256|RuleBase:RU362062}. CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|RuleBase:RU362062}. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000256|SAAS:SAAS00560878}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08598.1; -; Genomic_DNA. DR PIR; F64714; F64714. DR RefSeq; NP_208349.1; NC_000915.1. DR RefSeq; WP_000480097.1; NC_018939.1. DR ProteinModelPortal; O26080; -. DR IntAct; O26080; 10. DR STRING; 85962.HP1558; -. DR PaxDb; O26080; -. DR EnsemblBacteria; AAD08598; AAD08598; HP_1558. DR GeneID; 899733; -. DR KEGG; heo:C694_08075; -. DR KEGG; hpy:HP1558; -. DR PATRIC; 20594541; VBIHelPyl33062_1638. DR eggNOG; ENOG4108ZC9; Bacteria. DR eggNOG; COG1558; LUCA. DR KO; K02388; -. DR OMA; YVNYPNV; -. DR OrthoDB; EOG6KMB8P; -. DR BioCyc; HPY:HP1558-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030694; C:bacterial-type flagellum basal body, rod; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR001444; Flag_bb_rod_N. DR InterPro; IPR019776; Flagellar_basal_body_rod_CS. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR InterPro; IPR006299; FlgC. DR Pfam; PF00460; Flg_bb_rod; 1. DR Pfam; PF06429; Flg_bbr_C; 1. DR TIGRFAMs; TIGR01395; FlgC; 1. DR PROSITE; PS00588; FLAGELLA_BB_ROD; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|RuleBase:RU362062}; KW Cell projection {ECO:0000313|EMBL:AAD08598.1}; KW Cilium {ECO:0000313|EMBL:AAD08598.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08598.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 9 33 Flg_bb_rod. {ECO:0000259|Pfam:PF00460}. FT DOMAIN 110 158 Flg_bbr_C. {ECO:0000259|Pfam:PF06429}. SQ SEQUENCE 161 AA; 17755 MW; 35C28A6CFB50F881 CRC64; MFLSSFDISG YGLSAQRLRA NLISSNIANA NTTRTSEGGP YRRQEAVFKA FDFNEILNQK IAQNNQITPY EDPLDEGDEY PLIPITSVVV DKIVRDDSEP LMKYDPSHPD ANAQGYVAYP NVNAVVEMAD LVEATRAYQA NVAAFQSAKN MAQNAIGMLQ T // ID O25646_HELPY Unreviewed; 218 AA. AC O25646; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 89. DE SubName: Full=PARA protein {ECO:0000313|EMBL:AAD08045.1}; GN OrderedLocusNames=HP_1000 {ECO:0000313|EMBL:AAD08045.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08045.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08045.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08045.1; -; Genomic_DNA. DR PIR; H64644; H64644. DR RefSeq; NP_207791.1; NC_000915.1. DR RefSeq; WP_000587397.1; NC_018939.1. DR ProteinModelPortal; O25646; -. DR DIP; DIP-3618N; -. DR IntAct; O25646; 4. DR MINT; MINT-171333; -. DR STRING; 85962.HP1000; -. DR PaxDb; O25646; -. DR DNASU; 899533; -. DR EnsemblBacteria; AAD08045; AAD08045; HP_1000. DR GeneID; 899533; -. DR KEGG; heo:C694_05160; -. DR KEGG; hpy:HP1000; -. DR PATRIC; 20593325; VBIHelPyl33062_1044. DR eggNOG; ENOG4107GS8; Bacteria. DR eggNOG; COG1192; LUCA. DR KO; K03496; -. DR OMA; GEHSKES; -. DR OrthoDB; EOG61KBG0; -. DR BioCyc; HPY:HP1000-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01656; CbiA; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 169 CbiA. {ECO:0000259|Pfam:PF01656}. SQ SEQUENCE 218 AA; 24893 MW; 1EBCDE2752E56DA5 CRC64; MIITIANEKG GSGKSTLCLN LCVQLLLDKK DIAALDTDSQ KSLEVFNNIR SETSLPNFTL FNRTGNITDT LKQMMDKYEY ILIDTKGEHS KESQRAMLLS DWVLIPTTPS QLDTAVLLDM LERIRDIQAL NENLKACIVM NRIPTIPTLK EKKALIDFIN QNNANESVFL MDNLLSERIA YKRSVSEGMG VMEYNDNKAK NEWSQFYDEL NGYLRIKK // ID O25189_HELPY Unreviewed; 807 AA. AC O25189; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 86. DE SubName: Full=VirB4 homolog {ECO:0000313|EMBL:AAD07503.1}; GN OrderedLocusNames=HP_0441 {ECO:0000313|EMBL:AAD07503.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07503.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07503.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07503.1; -; Genomic_DNA. DR PIR; A64575; A64575. DR RefSeq; NP_207239.1; NC_000915.1. DR RefSeq; WP_000890320.1; NC_018939.1. DR ProteinModelPortal; O25189; -. DR STRING; 85962.HP0441; -. DR PaxDb; O25189; -. DR EnsemblBacteria; AAD07503; AAD07503; HP_0441. DR GeneID; 900070; -. DR KEGG; heo:C694_02240; -. DR KEGG; hpy:HP0441; -. DR PATRIC; 20592141; VBIHelPyl33062_0459. DR eggNOG; ENOG4105EJX; Bacteria. DR eggNOG; COG3451; LUCA. DR KO; K03199; -. DR OMA; VIENPIM; -. DR OrthoDB; EOG651STM; -. DR BioCyc; HPY:HP0441-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR004346; CagE_TrbE_VirB. DR InterPro; IPR018145; CagE_TrbE_VirB_cntrl_dom. DR InterPro; IPR002789; HerA_central. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR032689; TraG-D_C. DR Pfam; PF03135; CagE_TrbE_VirB; 1. DR Pfam; PF01935; DUF87; 1. DR Pfam; PF12696; TraG-D_C; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00929; VirB4_CagE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 194 392 CagE_TrbE_VirB. FT {ECO:0000259|Pfam:PF03135}. SQ SEQUENCE 807 AA; 93384 MW; 5315CFD4DB5518A7 CRC64; MLEKIFNSLC SLVPKRYNMK EETNIVGIYN EHYLLSEKSN LVGALKLEGI SYLSLDDKEI AQKFNERILA LNEIVDGVHF KIVVKRRKIF MHHEYTQEEI SNPFALEVIN LWEQGVEDVY QNFYYLIFET KNDSIKGYLE RFKKKITTNE LENIQENNRQ DEVKYQENYF IGFDNFNLLD KSKILYSIIN NVKNMLSGLF VEKIDANSLL NFYAEYINGV PSEYTFARGR LHDGMINSDV HFKKDFFTHI HNGKEIFKRF ISIKTYDIDK IVSTALSSVL HLSLEFDVIL NIDNIPKAKA EKRIETKRKR ANKSIRVEID ELNDMIKTDR VLMQEISLNI LVHAKTKTDL DSACIEITNL LKQKGIVSTQ ESIGMLPMFF SFFPNRNRLN FRKRLLSSQN IASLIILEKQ NCGFSRNSWG DRHLTIFRNQ DKSPYLFNFH AYEAKRKNDM VSGHTIIFGG TGAGKTTLIE FLITNCFKYE DLSILALDRN NGMRVMTEFL DGQYNDSNDF YINPFSLKDT SANCTFLVSW LAFMLNIDED TKDEKEKKTL SALSKTIRVC YNNITKQGGA IFKLRDFKDT LEIDYLDSKD ILEKESSKDL YKHSTDCLDF AKKLSVIDMD ALSSSKKDFN LAVLYLFYKV MNRAKLENKP FYIFIDEAKS VIENPIMLAK IKDTLAQARK LNGVLTLAFQ DINQLDGVEG AKSIIENAAQ VILYPTNNFE KLESYGILLS PIEKSFLNKT PLNARQVLVK NLLTQSSVFL EINLEKLNST SKKFLRAYNS SASSVFELET LKKDNPKDYK EIYLTKE // ID O25919_HELPY Unreviewed; 423 AA. AC O25919; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 80. DE SubName: Full=Type IIS restriction enzyme R protein (MBOIIR) {ECO:0000313|EMBL:AAD08410.1}; GN OrderedLocusNames=HP_1366 {ECO:0000313|EMBL:AAD08410.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08410.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08410.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08410.1; -; Genomic_DNA. DR PIR; F64690; F64690. DR RefSeq; NP_208158.1; NC_000915.1. DR RefSeq; WP_001125164.1; NC_018939.1. DR ProteinModelPortal; O25919; -. DR STRING; 85962.HP1366; -. DR REBASE; 56826; Hpy26695ORF7055P. DR PaxDb; O25919; -. DR EnsemblBacteria; AAD08410; AAD08410; HP_1366. DR GeneID; 900318; -. DR KEGG; heo:C694_07050; -. DR KEGG; hpy:HP1366; -. DR PATRIC; 20594121; VBIHelPyl33062_1431. DR KO; K01155; -. DR OMA; DNICKSE; -. DR OrthoDB; EOG6D2KR1; -. DR BioCyc; HPY:HP1366-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 423 AA; 50048 MW; 9086E51C8FE4E58E CRC64; MPKLEKILLE ITQLDPSKEC LKFLANRIKS SDYRGLHLSQ HNRYDQNKIK TIIQAIFNEV GGDFLQIRTT DMSKRPSNII GEEIYAKVVD NICKSEMPQD NSGKKNQVTQ DSLRKNLFVD MHRMGLIERY NKNKEPTNPY IQSNIKYISL TPLAIEFLNA QDLLRKNFCY TQALENLLQG FGAECREVMI ELDNHYLDIE EMMFFVTFLN IENFTRSEII EYVRGYRSLS RIQKEKLKEL VQDYCNPNHF NGNKLEKRDY HNWKNQAQQI FSLLEQSVFF ETNKERLILK ALNEENKQND KKLKRSIKEK ALYFEKHGVK KEKGFELHHI VPLCLARSIE EFDLLDKWEN LIYIDAFNHA KISQTQNKHI CLYFKNCDVV LSKGLKEEQE SLYLTYIENV LYKLDLQNAM LKYNKDLLHS KNG // ID O25188_HELPY Unreviewed; 677 AA. AC O25188; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 113. DE RecName: Full=DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; DE EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608}; GN OrderedLocusNames=HP_0440 {ECO:0000313|EMBL:AAD07502.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07502.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07502.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP-independent breakage of single-stranded CC DNA, followed by passage and rejoining. CC {ECO:0000256|SAAS:SAAS00046667}. CC -!- SIMILARITY: Belongs to the type IA topoisomerase family. CC {ECO:0000256|SAAS:SAAS00553561}. CC -!- SIMILARITY: Contains Toprim domain. CC {ECO:0000256|SAAS:SAAS00046686}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07502.1; -; Genomic_DNA. DR PIR; H64574; H64574. DR RefSeq; NP_207238.1; NC_000915.1. DR RefSeq; WP_000655392.1; NC_018939.1. DR ProteinModelPortal; O25188; -. DR STRING; 85962.HP0440; -. DR PaxDb; O25188; -. DR EnsemblBacteria; AAD07502; AAD07502; HP_0440. DR GeneID; 899242; -. DR KEGG; heo:C694_02235; -. DR KEGG; hpy:HP0440; -. DR PATRIC; 20592139; VBIHelPyl33062_0458. DR eggNOG; ENOG4107QWF; Bacteria. DR eggNOG; COG0550; LUCA. DR KO; K03168; -. DR OMA; YKENIKV; -. DR OrthoDB; EOG6S7XQ9; -. DR BioCyc; HPY:HP0440-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003917; F:DNA topoisomerase type I activity; IEA:UniProtKB-EC. DR GO; GO:0006265; P:DNA topological change; IEA:InterPro. DR Gene3D; 1.10.460.10; -; 2. DR Gene3D; 2.70.20.10; -; 2. DR Gene3D; 3.40.50.140; -; 1. DR InterPro; IPR000380; Topo_IA. DR InterPro; IPR003601; Topo_IA_2. DR InterPro; IPR013497; Topo_IA_cen. DR InterPro; IPR013824; Topo_IA_cen_sub1. DR InterPro; IPR013825; Topo_IA_cen_sub2. DR InterPro; IPR023405; Topo_IA_core_domain. DR InterPro; IPR003602; Topo_IA_DNA-bd_dom. DR InterPro; IPR006171; Toprim_domain. DR PANTHER; PTHR11390; PTHR11390; 1. DR Pfam; PF01131; Topoisom_bac; 1. DR Pfam; PF01751; Toprim; 1. DR PRINTS; PR00417; PRTPISMRASEI. DR SMART; SM00437; TOP1Ac; 1. DR SMART; SM00436; TOP1Bc; 1. DR SMART; SM00493; TOPRIM; 1. DR SUPFAM; SSF56712; SSF56712; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00440074}; KW Isomerase {ECO:0000256|SAAS:SAAS00440015}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Topoisomerase {ECO:0000256|SAAS:SAAS00440015}. FT DOMAIN 3 106 Toprim. {ECO:0000259|PROSITE:PS50880}. FT COILED 420 447 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 677 AA; 77677 MW; 4B285B81F1092BB4 CRC64; MKDSVIIIES PNKVEKIKQL TGAEVYATIG HFTNLIGVDI ENNFACKFEI KEDKAKKINF LINACRDKKV YIATDPDREG YGIGYQFYEK IKNVASEIYR AEFHEITPSG IESGLKNAVL FSRSNTNLYQ SFLGRIASDQ VVGFALTSYL RKSLNLSELS AGRVQTPALA LICQRDQEIR DFDKLDAEEK VEYQIQANIV CNEKEAIIKH VRANEKNELV DFKFKDKNEA SQFLKDLKDG LGSMSVLVSL KESLSNKEPK KPFTTSKLLS QASKSLKIPT KEIAQLAQKL FEAGLITYHR TDSEFLSPEY LKEHEVFFEP IYPSVYQYRE YKAGKNSQAE AHEAIRITHP HALKDLEKVC SDAKISEELA LKLYQLIYTN TICSQSRNAL YNQYDCIFKI KSESFKLSFK LLKEKGFLEI EELIQGKEEI NREEQESEIE NFSLKENDSV PLKEVFIKKI EKPSPKPYKE SAFIPLLESE GIGRPSTYAS FLDLLLKRKY ISIDTKTNAI TPTSQGLEVI SFFKKDKEVD FIALTSKDKS KLGNTTKQFE ECLDLIMRGE ASYEKFMLEV ISKLKSTAKF YQTQSTDNNM PTDKQLELID KICKDKKLQK PSQEILQNKE KCSDWIAEHV KEKPSQKQLN LVKKICEECK LAMPTNKILN DKFAISKWID KHKKTKK // ID O25310_HELPY Unreviewed; 113 AA. AC O25310; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE SubName: Full=Ferrodoxin-like protein {ECO:0000313|EMBL:AAD07653.1}; GN OrderedLocusNames=HP_0588 {ECO:0000313|EMBL:AAD07653.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07653.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07653.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07653.1; -; Genomic_DNA. DR PIR; D64593; D64593. DR RefSeq; NP_207383.1; NC_000915.1. DR RefSeq; WP_001096894.1; NC_000915.1. DR ProteinModelPortal; O25310; -. DR DIP; DIP-3580N; -. DR IntAct; O25310; 10. DR MINT; MINT-170357; -. DR STRING; 85962.HP0588; -. DR PaxDb; O25310; -. DR PRIDE; O25310; -. DR EnsemblBacteria; AAD07653; AAD07653; HP_0588. DR GeneID; 899022; -. DR KEGG; hpy:HP0588; -. DR PATRIC; 20592453; VBIHelPyl33062_0615. DR eggNOG; ENOG4108398; Bacteria. DR eggNOG; COG1146; LUCA. DR KO; K00176; -. DR OMA; CKACDIC; -. DR OrthoDB; EOG6CVV7G; -. DR BioCyc; HPY:HP0588-MONOMER; -. DR BioCyc; MetaCyc:HP0588-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR Pfam; PF13187; Fer4_9; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 2. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 39 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 46 76 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 113 AA; 12477 MW; 888785CAC651862B CRC64; MAKMSAPDGV AVWVNEDRCK GCDICVSVCP AGVLGMGIEK ERVLGKVAKV AYPESCIGCV QCELHCPDFA IYVADRKDFK FAKVSKEAQE RSEKVKANKY MLLEETILEG RDK // ID O25918_HELPY Unreviewed; 213 AA. AC O25918; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 112. DE SubName: Full=Response regulator {ECO:0000313|EMBL:AAD08405.1}; GN OrderedLocusNames=HP_1365 {ECO:0000313|EMBL:AAD08405.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08405.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08405.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains OmpR/PhoB-type DNA-binding domain. CC {ECO:0000256|SAAS:SAAS00583175}. CC -!- SIMILARITY: Contains response regulatory domain. CC {ECO:0000256|SAAS:SAAS00122777}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08405.1; -; Genomic_DNA. DR PIR; E64690; E64690. DR RefSeq; NP_208157.1; NC_000915.1. DR RefSeq; WP_001169789.1; NC_018939.1. DR ProteinModelPortal; O25918; -. DR IntAct; O25918; 1. DR STRING; 85962.HP1365; -. DR PaxDb; O25918; -. DR EnsemblBacteria; AAD08405; AAD08405; HP_1365. DR GeneID; 900319; -. DR KEGG; heo:C694_07045; -. DR KEGG; hpy:HP1365; -. DR PATRIC; 20594119; VBIHelPyl33062_1430. DR eggNOG; ENOG4105DPZ; Bacteria. DR eggNOG; COG0745; LUCA. DR KO; K02483; -. DR OMA; RRIKNDF; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP1365-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001867; OmpR/PhoB-type_DNA-bd. DR InterPro; IPR016032; Sig_transdc_resp-reg_C-effctor. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00072; Response_reg; 1. DR Pfam; PF00486; Trans_reg_C; 1. DR SMART; SM00448; REC; 1. DR SMART; SM00862; Trans_reg_C; 1. DR SUPFAM; SSF46894; SSF46894; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS51755; OMPR_PHOB; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00582919}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transcription {ECO:0000256|SAAS:SAAS00275006}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00275006}; KW Two-component regulatory system {ECO:0000256|SAAS:SAAS00583142}. FT DOMAIN 4 119 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. FT DOMAIN 121 212 OmpR/PhoB-type DNA-binding. FT {ECO:0000259|PROSITE:PS51755}. SQ SEQUENCE 213 AA; 24872 MW; 17F7543923017900 CRC64; MQKKIFLLED DYLLSESVKE FLEHLGYEVF CAFNGKEAYE RLSVERFNLL LLDVQVPEMN SLELFKRIKN DFLISTPVIF ITALQDNATL KNAFNLGASD YLKKPFDLDE LEARIKRFFN DDPIEIMPNI FYHQNCLSVR GKKEILPPKT AQLLEYFLEH KGQIISSQAL ENNLWEQAID DSTLRTYIKV LRKLLGKNCI ETHKGVGYRF NPL // ID O25675_HELPY Unreviewed; 354 AA. AC O25675; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 91. DE SubName: Full=Flagellar motor switch protein (FliM) {ECO:0000313|EMBL:AAD08075.1}; GN OrderedLocusNames=HP_1031 {ECO:0000313|EMBL:AAD08075.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08075.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08075.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4FQ0, ECO:0000213|PDB:4GC8} RP X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 31-237. RX PubMed=23614777; DOI=10.1111/mmi.12222; RA Lam K.H., Lam W.W., Wong J.Y., Chan L.C., Kotaka M., Ling T.K., RA Jin D.Y., Ottemann K.M., Au S.W.; RT "Structural basis of FliG-FliM interaction in Helicobacter pylori."; RL Mol. Microbiol. 88:798-812(2013). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08075.1; -; Genomic_DNA. DR PIR; G64648; G64648. DR RefSeq; NP_207821.1; NC_000915.1. DR RefSeq; WP_000763575.1; NC_018939.1. DR PDB; 4FQ0; X-ray; 2.82 A; A/B=33-237. DR PDB; 4GC8; X-ray; 2.20 A; A/B/C=31-237. DR PDBsum; 4FQ0; -. DR PDBsum; 4GC8; -. DR ProteinModelPortal; O25675; -. DR IntAct; O25675; 3. DR STRING; 85962.HP1031; -. DR PaxDb; O25675; -. DR EnsemblBacteria; AAD08075; AAD08075; HP_1031. DR GeneID; 899566; -. DR KEGG; heo:C694_05335; -. DR KEGG; hpy:HP1031; -. DR PATRIC; 20593399; VBIHelPyl33062_1080. DR eggNOG; ENOG4105D24; Bacteria. DR eggNOG; COG1868; LUCA. DR KO; K02416; -. DR OMA; NPQFTQI; -. DR OrthoDB; EOG68M4DH; -. DR BioCyc; HPY:HP1031-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR028976; CheC-like_dom. DR InterPro; IPR001689; Flag_FliM. DR InterPro; IPR001543; SpoA. DR Pfam; PF02154; FliM; 1. DR Pfam; PF01052; FliMN_C; 1. DR PIRSF; PIRSF002888; FliM; 1. DR PRINTS; PR00955; FLGMOTORFLIM. DR SUPFAM; SSF101801; SSF101801; 1. DR SUPFAM; SSF103039; SSF103039; 1. DR TIGRFAMs; TIGR01397; fliM_switch; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4FQ0, ECO:0000213|PDB:4GC8}; KW Cell projection {ECO:0000313|EMBL:AAD08075.1}; KW Cilium {ECO:0000313|EMBL:AAD08075.1}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08075.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 254 323 FliMN_C. {ECO:0000259|Pfam:PF01052}. FT COILED 320 354 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 354 AA; 40171 MW; AE815F7E3FD21926 CRC64; MADILSQEEI DALLEVVDEN VDIQNVQKKD IIPQRSVTLY DFKRPNRVSK EQLRSFRSIH DKMARNLSSQ VSSIMRSIVE IQLHSVDQMT YGEFLMSLPS PTSFNVFSMK PMGGTGVLEI NPSIAFPMID RLLGGKGSAY DQNREFSDIE LNLLDTILRQ VMQILKEVWS PVVEMFPTID AKESSANVVQ IVAQNEISIM VVLEIIIGHS RGMMNICYPV ISIESILSKM GSRDLMLSET NSKKSRNKEL QALLSGVSVD MIVFLGAVEL SLKEMLDLDV GDTIRLNKIA NDEVSVYVHK KKRYLASVGF QGYRKTIQIK EVIYSEKERT KEILEMLEEQ RRGKVGDIMK IEEE // ID O25737_HELPY Unreviewed; 130 AA. AC O25737; Q7BVH1; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 114. DE SubName: Full=Pyruvate ferredoxin oxidoreductase, delta subunit {ECO:0000313|EMBL:AAD08153.1}; GN OrderedLocusNames=HP_1109 {ECO:0000313|EMBL:AAD08153.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08153.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08153.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08153.1; -; Genomic_DNA. DR PIR; E64658; E64658. DR RefSeq; NP_207900.1; NC_000915.1. DR RefSeq; WP_000656174.1; NC_018939.1. DR ProteinModelPortal; O25737; -. DR STRING; 85962.HP1109; -. DR PaxDb; O25737; -. DR EnsemblBacteria; AAD08153; AAD08153; HP_1109. DR GeneID; 899645; -. DR KEGG; heo:C694_05720; -. DR KEGG; hpy:HP1109; -. DR PATRIC; 20593559; VBIHelPyl33062_1159. DR eggNOG; ENOG4105WGB; Bacteria. DR eggNOG; COG1144; LUCA. DR KO; K00171; -. DR OMA; EVCPTNP; -. DR OrthoDB; EOG6R5C9P; -. DR BioCyc; HPY:HP1109-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016625; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor; IEA:InterPro. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR011898; PorD_KorD. DR Pfam; PF00037; Fer4; 1. DR TIGRFAMs; TIGR02179; PorD_KorD; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 2. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW 4Fe-4S {ECO:0000256|RuleBase:RU003429}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Iron {ECO:0000256|RuleBase:RU003429}; KW Iron-sulfur {ECO:0000256|RuleBase:RU003429}; KW Metal-binding {ECO:0000256|RuleBase:RU003429}; KW Pyruvate {ECO:0000313|EMBL:AAD08153.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 49 77 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 78 110 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 130 AA; 15108 MW; 56E9C04FB18C5AE6 CRC64; MKDWNEFEMG AVLFPFEKNA QSEMEKHNDE RHYTEQSYFT TSVAHWRVAK PVHNNNICIN CFNCWVYCPD AAILSREGKL KGVDYSHCKG CGVCVDVCPT NPKSLWMFEE QIEPATALTQ WPQKQEKKKS // ID O25146_HELPY Unreviewed; 250 AA. AC O25146; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07464.1}; GN OrderedLocusNames=HP_0384 {ECO:0000313|EMBL:AAD07464.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07464.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07464.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07464.1; -; Genomic_DNA. DR PIR; H64567; H64567. DR RefSeq; NP_207182.1; NC_000915.1. DR RefSeq; WP_001171324.1; NC_018939.1. DR ProteinModelPortal; O25146; -. DR STRING; 85962.HP0384; -. DR PaxDb; O25146; -. DR EnsemblBacteria; AAD07464; AAD07464; HP_0384. DR GeneID; 898869; -. DR KEGG; heo:C694_01950; -. DR KEGG; hpy:HP0384; -. DR PATRIC; 20592005; VBIHelPyl33062_0396. DR OMA; NCYEAYV; -. DR OrthoDB; EOG6GN710; -. DR BioCyc; HPY:HP0384-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042834; F:peptidoglycan binding; IEA:InterPro. DR InterPro; IPR007730; SPOR_dom. DR Pfam; PF05036; SPOR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 250 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157716. FT DOMAIN 181 246 SPOR. {ECO:0000259|Pfam:PF05036}. SQ SEQUENCE 250 AA; 29031 MW; DDCA656FA3C793AD CRC64; MQKNILKMTL LLVFLFLRNA VGLEDKKATT QPESVQNTPK DLPPIQLRLN QVHEELIEML ENMGKGTQYE FPKIKEILEQ SEEEWLKVAH EECVALVMLI SPKASIENSP IYKNCYEAYV KQRIHDLYDF YIESKKVKRK IKKAHKQETA INQSQPLTKE SPKNENKKNL VKPNLKDASI PKGYYLQIGA XLNAPSKDFL QTLKTFPYQI KKKDSLTHYF IGPYKTKEEA LKQLENAIKS FKNKPVLVEK // ID O25013_HELPY Unreviewed; 277 AA. AC O25013; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 82. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07292.1}; GN OrderedLocusNames=HP_0226 {ECO:0000313|EMBL:AAD07292.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07292.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07292.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363041}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363041}. CC -!- SIMILARITY: Belongs to the UPF0721 family. CC {ECO:0000256|RuleBase:RU363041}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07292.1; -; Genomic_DNA. DR PIR; B64548; B64548. DR RefSeq; NP_207024.1; NC_000915.1. DR RefSeq; WP_000393024.1; NC_018939.1. DR ProteinModelPortal; O25013; -. DR STRING; 85962.HP0226; -. DR PaxDb; O25013; -. DR EnsemblBacteria; AAD07292; AAD07292; HP_0226. DR GeneID; 900331; -. DR KEGG; heo:C694_01140; -. DR KEGG; hpy:HP0226; -. DR PATRIC; 20591675; VBIHelPyl33062_0237. DR eggNOG; ENOG4107ZDD; Bacteria. DR eggNOG; COG0730; LUCA. DR KO; K07090; -. DR OMA; PIPFVSM; -. DR OrthoDB; EOG6TXQW7; -. DR BioCyc; HPY:HP0226-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR InterPro; IPR002781; TM_pro_TauE-like. DR PANTHER; PTHR30269; PTHR30269; 1. DR Pfam; PF01925; TauE; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU363041}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363041}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363041}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 6 32 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 44 63 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 75 93 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 100 118 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 158 189 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 196 216 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 228 250 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 257 275 Helical. {ECO:0000256|RuleBase:RU363041}. SQ SEQUENCE 277 AA; 29732 MW; FAC57758F9CC9DB7 CRC64; MEESTAFILA LVGLFTGITA GFFGIGGGEI VVPSAIFAHF SYSHAVGISL MQMLFSSVVG SIINYKKGLL DLREGSFAAL GGLMGAILGS FILKIIDDKI LMAVFVVVVC YTFIKYAFSS NKKPKHFEEM HFDLHANNKT PEKKRAIPFV SMDRTHGVLM LAGFVTGIFS IPLGMGGGIL MVPFLGYFLK YDSKKIVPLG LFFVVFASLS GVISLYNGRV LDNISVQAGV ITGIGAFLGV GIGIKLIALA NEKVHKILLL LIYALSILAT LHKLIMG // ID O25311_HELPY Unreviewed; 375 AA. AC O25311; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE SubName: Full=Ferredoxin oxidoreductase, alpha subunit {ECO:0000313|EMBL:AAD07654.1}; GN OrderedLocusNames=HP_0589 {ECO:0000313|EMBL:AAD07654.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07654.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07654.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07654.1; -; Genomic_DNA. DR PIR; E64593; E64593. DR RefSeq; NP_207384.1; NC_000915.1. DR RefSeq; WP_001206856.1; NC_018939.1. DR ProteinModelPortal; O25311; -. DR DIP; DIP-3462N; -. DR IntAct; O25311; 3. DR MINT; MINT-171790; -. DR STRING; 85962.HP0589; -. DR PaxDb; O25311; -. DR EnsemblBacteria; AAD07654; AAD07654; HP_0589. DR GeneID; 900220; -. DR KEGG; heo:C694_03040; -. DR KEGG; hpy:HP0589; -. DR PATRIC; 20592455; VBIHelPyl33062_0616. DR eggNOG; ENOG4105DI2; Bacteria. DR eggNOG; COG0674; LUCA. DR KO; K00174; -. DR OMA; REQIRIP; -. DR OrthoDB; EOG6GTZJW; -. DR BioCyc; HPY:HP0589-MONOMER; -. DR BioCyc; MetaCyc:HP0589-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR033412; PFOR_II. DR InterPro; IPR002880; Pyrv_Fd/Flavodoxin_OxRdtase_N. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR Pfam; PF17147; PFOR_II; 1. DR Pfam; PF01855; POR_N; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR SUPFAM; SSF52922; SSF52922; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 15 243 POR_N. {ECO:0000259|Pfam:PF01855}. SQ SEQUENCE 375 AA; 41509 MW; FE0AB38128C81E50 CRC64; MREIISDGNE LVAKAAIEVG CRFFGGYPIT PSSDIMHAMS VALPKCGGHF IQMEDEISGI SVSLGASMSG TKSMTASSGP GISLKVEQIG YSFMAEIPLV IADVMRSGPS TGMPTRVAQG DVNFLRHPIH GDFKAVALAP ANLEEAYTET VRAFNLAEML MTPVFLLMDE TVGHMYGKVQ IPDLEEVQKM TINRKEFLGD KKDYKPYGVA QDEPAVLNPF FKGYRYHVSG LHHGPIGFPT EDAKIGGDLI DRLFNKIESK QDIINENEEM DLEGAEIVVI AYGSVSLAVK EALKDYHKES KQKVGFFRPK TLWPSPAKRL KEIGDKYEKI LVIELNKGQY LEEIERAMQR KVHFLGQANG RTISPKQIIA KLKEL // ID O24865_HELPY Unreviewed; 405 AA. AC O24865; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 100. DE RecName: Full=Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; DE Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941}; DE Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941}; DE EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941}; GN OrderedLocusNames=HP_0020 {ECO:0000313|EMBL:AAD07088.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07088.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07088.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the decarboxylation of carboxynorspermidine CC and carboxyspermidine. {ECO:0000256|PIRNR:PIRNR038941}. CC -!- CATALYTIC ACTIVITY: Carboxynorspermidine = bis(3-aminopropyl)amine CC + CO(2). {ECO:0000256|PIRNR:PIRNR038941}. CC -!- CATALYTIC ACTIVITY: Carboxyspermidine = spermidine + CO(2). CC {ECO:0000256|PIRNR:PIRNR038941}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|PIRNR:PIRNR038941}; CC -!- SUBUNIT: Homodimer. {ECO:0000256|PIRNR:PIRNR038941}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR038941}. CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II CC family. NspC subfamily. {ECO:0000256|PIRNR:PIRNR038941}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07088.1; -; Genomic_DNA. DR PIR; D64522; D64522. DR RefSeq; NP_206822.1; NC_000915.1. DR RefSeq; WP_000760930.1; NC_018939.1. DR ProteinModelPortal; O24865; -. DR DIP; DIP-3268N; -. DR IntAct; O24865; 1. DR MINT; MINT-184791; -. DR STRING; 85962.HP0020; -. DR PaxDb; O24865; -. DR DNASU; 899101; -. DR EnsemblBacteria; AAD07088; AAD07088; HP_0020. DR GeneID; 899101; -. DR KEGG; heo:C694_00095; -. DR KEGG; hpy:HP0020; -. DR PATRIC; 20591233; VBIHelPyl33062_0018. DR eggNOG; ENOG4105D3D; Bacteria. DR eggNOG; COG0019; LUCA. DR KO; K13747; -. DR OMA; YTMVKTT; -. DR OrthoDB; EOG61GG8X; -. DR BioCyc; HPY:HP0020-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016831; F:carboxy-lyase activity; IEA:UniProtKB-KW. DR GO; GO:0008295; P:spermidine biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 2.40.37.10; -; 1. DR Gene3D; 3.20.20.10; -; 1. DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C. DR InterPro; IPR022643; De-COase2_C. DR InterPro; IPR005730; Nsp_de-COase. DR InterPro; IPR029066; PLP-binding_barrel. DR Pfam; PF00278; Orn_DAP_Arg_deC; 1. DR PIRSF; PIRSF038941; NspC; 1. DR SUPFAM; SSF50621; SSF50621; 1. DR SUPFAM; SSF51419; SSF51419; 1. DR TIGRFAMs; TIGR01047; nspC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Cytoplasm {ECO:0000256|PIRNR:PIRNR038941}; KW Decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; KW Lyase {ECO:0000256|PIRNR:PIRNR038941}; KW Polyamine biosynthesis {ECO:0000256|PIRNR:PIRNR038941}; KW Pyridoxal phosphate {ECO:0000256|PIRNR:PIRNR038941, KW ECO:0000256|SAAS:SAAS00418093}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Spermidine biosynthesis {ECO:0000256|PIRNR:PIRNR038941}. FT DOMAIN 268 380 Orn_DAP_Arg_deC. FT {ECO:0000259|Pfam:PF00278}. SQ SEQUENCE 405 AA; 45892 MW; 790BB507A809467C CRC64; MKKYSTIPTP CYVLESERLE KNAKILEIVR QQSGAKVLLA LKGYAFWREF GILRQKLNGC CASGLYEAKL AFEEFGGRES HKEICVYSPA FKEAEMSAIL PLATSIIFNS FYQYATYKDR ILDKNKQLEN LGLSPIKMGL RINPLYSEVT PAIYNPCSKV SRLGITPSGF EKGVKEHGLE GVSGLHFHTH CEQNADALCR TLEHVEKHFR PYLENMAWVN FGGGHHITKS DYDVNLLIQT IKDFKERYHN IEVILEPGEA IGWQCGFLIA SVIDIVQNDQ EIAILDASFS AHMPDCLEMP YRPSIFKVSV ENDEELIEVE KGENQGAFSY FLGGPTCLAG DFMGSFSFET PLKRGDKIVF QDMLHYTIVK NNSFNGVPLP SLARLDQQGF KILKNFSYED YKNRN // ID O24953_HELPY Unreviewed; 551 AA. AC O24953; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=L-lactate permease (LctP) {ECO:0000313|EMBL:AAD07209.1}; GN OrderedLocusNames=HP_0141 {ECO:0000313|EMBL:AAD07209.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07209.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07209.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07209.1; -; Genomic_DNA. DR PIR; E64537; E64537. DR RefSeq; NP_206941.1; NC_000915.1. DR RefSeq; WP_000889036.1; NC_018939.1. DR ProteinModelPortal; O24953; -. DR STRING; 85962.HP0141; -. DR PaxDb; O24953; -. DR EnsemblBacteria; AAD07209; AAD07209; HP_0141. DR GeneID; 899066; -. DR KEGG; heo:C694_00695; -. DR KEGG; hpy:HP0141; -. DR PATRIC; 20591499; VBIHelPyl33062_0149. DR eggNOG; ENOG4105DAA; Bacteria. DR eggNOG; COG1620; LUCA. DR KO; K03303; -. DR OMA; MSEFHQV; -. DR OrthoDB; EOG6Q8J3Z; -. DR BioCyc; HPY:HP0141-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro. DR GO; GO:0015129; F:lactate transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR003804; Lactate_perm. DR PANTHER; PTHR30003; PTHR30003; 1. DR Pfam; PF02652; Lactate_perm; 1. DR TIGRFAMs; TIGR00795; lctP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 139 162 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 217 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 224 245 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 251 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 312 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 363 384 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 404 422 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 428 453 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 524 543 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 551 AA; 59408 MW; 3776D4A2E7824C7C CRC64; MLEFHQIYDP LGNIWLSALV ALLPILLFFL SLMVFKLKGY TAAFLSVALS AVIAVLVYKM PVSMVGSSFL YGFLYGLWPI AWIIIAAIFL YKLSVKSGYF EILKESVQSI TLDHRILVIL IGFCFGSFLE GAIGFGGPIA ITAAILVGLG LSPLYSAGLC LIANTAPVAF GAVGIPISAM ASAVGVPAIL ISAMTGKILF FVSLLVPFFI VFLMDGFKGI KETFPAVFIA AFSFAGAQFL SSNYLGPELP GIISALVSLV ATALFLKFWQ PKAIFRSDGK AASFTKSNHH ICKIYVAWSP FVILVLVIVL WIQPFFKALF EKDGLLAFSN FYFEFNNISN HIFKSPPFVE ANQSVSFPVV FKFLLINTVG TSIFLAALVS MLVLRVRVSD ALSVFGETLK EMRYPILTIG LVLSFAYVSN YSGISSTLAL ALTHTGLAFT FFSPLIGWVG VFLTGSDTSS NLLFGSLQQL TAQRLHLPEV LTLTANTVGG TLGKMISPQS IAIACAAVGL AGKESDLFKF TVKYSLIFVA IMGVVISAIA YLIPEVVPAI K // ID O25317_HELPY Unreviewed; 490 AA. AC O25317; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 104. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07664.1}; GN OrderedLocusNames=HP_0595 {ECO:0000313|EMBL:AAD07664.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07664.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07664.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000256|SAAS:SAAS00013082}; Multi-pass membrane protein CC {ECO:0000256|SAAS:SAAS00013082}. CC -!- SIMILARITY: Belongs to the DsbB family. CC {ECO:0000256|SAAS:SAAS00539904}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07664.1; -; Genomic_DNA. DR PIR; C64594; C64594. DR RefSeq; NP_207390.1; NC_000915.1. DR RefSeq; WP_000356995.1; NC_018939.1. DR ProteinModelPortal; O25317; -. DR DIP; DIP-3453N; -. DR IntAct; O25317; 6. DR MINT; MINT-171087; -. DR STRING; 85962.HP0595; -. DR PaxDb; O25317; -. DR EnsemblBacteria; AAD07664; AAD07664; HP_0595. DR GeneID; 900028; -. DR KEGG; heo:C694_03070; -. DR KEGG; hpy:HP0595; -. DR PATRIC; 20592467; VBIHelPyl33062_0622. DR eggNOG; COG1495; LUCA. DR KO; K03611; -. DR OMA; TSRAKNY; -. DR OrthoDB; EOG6VHZ74; -. DR BioCyc; HPY:HP0595-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR Gene3D; 1.20.1550.10; -; 1. DR InterPro; IPR003752; DiS_bond_form_DsbB/BdbC. DR InterPro; IPR023380; DsbB-like_dom. DR Pfam; PF02600; DsbB; 1. PE 3: Inferred from homology; KW Cell inner membrane {ECO:0000256|SAAS:SAAS00422428}; KW Cell membrane {ECO:0000256|SAAS:SAAS00422428}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Disulfide bond {ECO:0000256|SAAS:SAAS00422425}; KW Electron transport {ECO:0000256|SAAS:SAAS00422421}; KW Membrane {ECO:0000256|SAAS:SAAS00422420, KW ECO:0000256|SAAS:SAAS00422428, ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000256|SAAS:SAAS00422424}; KW Redox-active center {ECO:0000256|SAAS:SAAS00422415}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAAS:SAAS00422420, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00422420, KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|SAAS:SAAS00422421}. FT TRANSMEM 7 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 88 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 108 129 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 149 172 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 490 AA; 55481 MW; 99FEA5304858D5F2 CRC64; MDKETRFYNL FSLAILGILI FPVGLANFYF GYVLKDSPCI FCWAQRINMI LIGAVALLVV RFGFKPKYIA LLLLMASSGL YESFYHTGSH ALEDVGQGFA LAILGLHTQF WALFVFFSVV VLLAVLLFFA PNAQPFKDHS LNALQKIAFY VFFMVVGSNA VQAFISTGPF PYIGQSDPVR FSWNLKESVW SMENWDHLKF PRSVLGRRDV GEPLKLSALP KDNDYERSPL EITKTLKIGK KEELFLKLNG AITDLSFNED KAILTTENQG LYLVSNDLKT IHSHMVLDSY YSATVGSFVG ADFNEDENIV IMGNNKTSVE ITPNKNANML KNFPYFLEGV NSFDEVERSR LKTSRAKNYY VSVARRGAKF TYLISAPNKR YKDLIIISMR NSDKQVHGEF LLELGNAKLK EKRGLGELVI STLALKDNKL YAFSKEFNTL LVIDPTKEEI LEVYGLPKEI KNISAGGFRN DELVLVSYEN NKNILYTLNF // ID O25852_HELPY Unreviewed; 266 AA. AC O25852; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 99. DE RecName: Full=NADH-quinone oxidoreductase {ECO:0000256|RuleBase:RU003582}; DE EC=1.6.5.11 {ECO:0000256|RuleBase:RU003582}; GN OrderedLocusNames=HP_1262 {ECO:0000313|EMBL:AAD08308.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08308.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08308.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. CC {ECO:0000256|RuleBase:RU003582}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000256|RuleBase:RU003582}. CC -!- SIMILARITY: Belongs to the complex I 30 kDa subunit family. CC {ECO:0000256|RuleBase:RU003456}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08308.1; -; Genomic_DNA. DR PIR; F64677; F64677. DR RefSeq; NP_208054.1; NC_000915.1. DR RefSeq; WP_000989706.1; NC_000915.1. DR ProteinModelPortal; O25852; -. DR DIP; DIP-3413N; -. DR IntAct; O25852; 16. DR MINT; MINT-179019; -. DR STRING; 85962.HP1262; -. DR PaxDb; O25852; -. DR PRIDE; O25852; -. DR DNASU; 898780; -. DR EnsemblBacteria; AAD08308; AAD08308; HP_1262. DR GeneID; 898780; -. DR KEGG; hpy:HP1262; -. DR PATRIC; 20593901; VBIHelPyl33062_1321. DR eggNOG; ENOG4105CYU; Bacteria. DR eggNOG; COG0852; LUCA. DR KO; K00332; -. DR OMA; YDMLGIV; -. DR OrthoDB; EOG60PHFK; -. DR BioCyc; HPY:HP1262-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR InterPro; IPR010218; NADH_DH_suC. DR InterPro; IPR001268; NADH_UbQ_OxRdtase_30kDa_su. DR InterPro; IPR020396; NADH_UbQ_OxRdtase_CS. DR Pfam; PF00329; Complex1_30kDa; 1. DR ProDom; PD001581; NADH_UbQ_OxRdtase_30kDa_su; 1. DR TIGRFAMs; TIGR01961; NuoC_fam; 1. DR PROSITE; PS00542; COMPLEX1_30K; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW NAD {ECO:0000256|RuleBase:RU003582}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003582}; KW Quinone {ECO:0000256|RuleBase:RU003582}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Ubiquinone {ECO:0000313|EMBL:AAD08308.1}. FT DOMAIN 64 185 Complex1_30kDa. FT {ECO:0000259|Pfam:PF00329}. SQ SEQUENCE 266 AA; 31517 MW; AC53A0A7695F0245 CRC64; MMVRKQSPYE DVQKQSRQHD PYKIIEPTPK KYLEGSAYEV IYNHLSYKHE ILDKYIETNT AVFWIKKDDI FSVATILRHL GYECLSEMSA IDLCAKKGHF ELFYQFVGFS DSCKNRRRVR VKCVLLPNES VDSLSFLYRS ANWSEREAYD MLGIVFDKHP YLKRLIMPHD WVGHPLLRSY PLKGDEFAQW YEVDKIFGKE YREVVGKEQR DSARVDEKDT FNFAKIGYEQ GKGEELKEVE EKHAFKKIPF VKDLHKIAPT ILKKRL // ID O25660_HELPY Unreviewed; 200 AA. AC O25660; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 88. DE SubName: Full=Phosphatidylglycerophosphate synthase (PgsA) {ECO:0000313|EMBL:AAD08061.1}; GN OrderedLocusNames=HP_1016 {ECO:0000313|EMBL:AAD08061.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08061.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08061.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the CDP-alcohol phosphatidyltransferase CC class-I family. {ECO:0000256|RuleBase:RU003750, CC ECO:0000256|SAAS:SAAS00571358}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08061.1; -; Genomic_DNA. DR PIR; H64646; H64646. DR RefSeq; NP_207806.1; NC_000915.1. DR RefSeq; WP_000333749.1; NC_000915.1. DR ProteinModelPortal; O25660; -. DR STRING; 85962.HP1016; -. DR PaxDb; O25660; -. DR PRIDE; O25660; -. DR DNASU; 899551; -. DR EnsemblBacteria; AAD08061; AAD08061; HP_1016. DR GeneID; 899551; -. DR KEGG; hpy:HP1016; -. DR PATRIC; 20593367; VBIHelPyl33062_1064. DR eggNOG; ENOG4105BZQ; Bacteria. DR eggNOG; COG0558; LUCA. DR KO; K00995; -. DR OMA; ADATYSY; -. DR OrthoDB; EOG6WMJ3D; -. DR BioCyc; HPY:HP1016-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008444; F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; IEA:InterPro. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-KW. DR InterPro; IPR000462; CDP-OH_P_trans. DR InterPro; IPR004570; Phosphatidylglycerol_P_synth. DR Pfam; PF01066; CDP-OH_P_transf; 1. DR PIRSF; PIRSF000847; Phos_ph_gly_syn; 1. DR TIGRFAMs; TIGR00560; pgsA; 1. DR PROSITE; PS00379; CDP_ALCOHOL_P_TRANSF; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Lipid biosynthesis {ECO:0000256|SAAS:SAAS00461556}; KW Lipid metabolism {ECO:0000256|SAAS:SAAS00461556}; KW Membrane {ECO:0000256|SAAS:SAAS00461540, ECO:0000256|SAM:Phobius}; KW Phospholipid biosynthesis {ECO:0000256|SAAS:SAAS00461556}; KW Phospholipid metabolism {ECO:0000256|SAAS:SAAS00461556}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU003750, KW ECO:0000256|SAAS:SAAS00461509}; KW Transmembrane {ECO:0000256|SAAS:SAAS00461540, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00461540, KW ECO:0000256|SAM:Phobius}. FT TRANSMEM 27 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 191 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 200 AA; 22638 MW; A8F4D58280255686 CRC64; MCGAWFFGAR VFEFFTSLFE SMKVLKLLPN FLTILRIVLS LFLLFLLLNT RTYFSFLTPF QTNMISSLVF LFAALTDLLD GYIARSYKAK SRFGEIFDPL ADKILILSAF LGLVYLDRVN AWIPFVILGR EFFISGLRVL AANEKKDIPV NALGKYKTVS QVVAIGALLA DVTYSYALVA IAVFLTLYSG IDYTIKYYKS // ID O24960_HELPY Unreviewed; 194 AA. AC O24960; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07223.1}; GN OrderedLocusNames=HP_0149 {ECO:0000313|EMBL:AAD07223.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07223.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07223.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07223.1; -; Genomic_DNA. DR PIR; E64538; E64538. DR RefSeq; NP_206948.1; NC_000915.1. DR RefSeq; WP_001221992.1; NC_018939.1. DR ProteinModelPortal; O24960; -. DR DIP; DIP-3245N; -. DR IntAct; O24960; 12. DR MINT; MINT-159750; -. DR STRING; 85962.HP0149; -. DR PaxDb; O24960; -. DR EnsemblBacteria; AAD07223; AAD07223; HP_0149. DR GeneID; 898861; -. DR KEGG; heo:C694_00745; -. DR KEGG; hpy:HP0149; -. DR PATRIC; 20591519; VBIHelPyl33062_0159. DR OMA; HDAQKIE; -. DR OrthoDB; EOG6RRKN8; -. DR BioCyc; HPY:HP0149-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 191 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 194 AA; 22239 MW; B06EA12F553BDB09 CRC64; MRILWLVIAF VCCLGADDYV FNNFKGRLVE KSVAFVEGVS KELYLKTGVR FVIDMTDFEK NPIALATKKE RQNYQEGFLK QLKPPFVVFF FYHDAQKIEL VANPKDLLDT DKIFFEKIAP LLPTNPKEYT PQRISAMLIN GYSVAVDALA QKYRVNITQN FNAPKGVTFV KVVIYILLLT LLGAFLGLYF FKKS // ID O25892_HELPY Unreviewed; 224 AA. AC O25892; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08389.1}; GN OrderedLocusNames=HP_1334 {ECO:0000313|EMBL:AAD08389.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08389.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08389.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08389.1; -; Genomic_DNA. DR PIR; F64686; F64686. DR RefSeq; NP_208126.1; NC_000915.1. DR RefSeq; WP_000039550.1; NC_018939.1. DR ProteinModelPortal; O25892; -. DR DIP; DIP-3710N; -. DR IntAct; O25892; 3. DR MINT; MINT-160946; -. DR STRING; 85962.HP1334; -. DR PaxDb; O25892; -. DR EnsemblBacteria; AAD08389; AAD08389; HP_1334. DR GeneID; 898804; -. DR KEGG; heo:C694_06885; -. DR KEGG; hpy:HP1334; -. DR PATRIC; 20594051; VBIHelPyl33062_1396. DR eggNOG; ENOG4108MIT; Bacteria. DR eggNOG; COG1432; LUCA. DR OMA; FFYDCPP; -. DR OrthoDB; EOG6GN70P; -. DR BioCyc; HPY:HP1334-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.1010; -; 2. DR InterPro; IPR021139; NYN_limkain-b1. DR InterPro; IPR029060; PIN_domain-like. DR Pfam; PF01936; NYN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 124 211 NYN. {ECO:0000259|Pfam:PF01936}. SQ SEQUENCE 224 AA; 26488 MW; 90F100D9EE524015 CRC64; MSKKVAILVD GDFFIRCYKS HLKKQPEDLN PKKLAHHIHT YCLKHINKKN DEELYRIFFY DCKPLKKKAH YPYTQKALDL SKSPTYRERE ELHEHLISKP CLALRLGYLD EKNARWVIRD QEKEKKLFNR RISIEEFQND DFIYHAKQKG VDIKIGLDIA TLALKKLVQK IVLISGDSDF VPASKLARVE GIIFTLDPMG NHIREDLKEH IDYLTTRLPQ FKQQ // ID O24861_HELPY Unreviewed; 87 AA. AC O24861; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07092.1}; GN OrderedLocusNames=HP_0016 {ECO:0000313|EMBL:AAD07092.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07092.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07092.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07092.1; -; Genomic_DNA. DR PIR; H64521; H64521. DR RefSeq; NP_206818.1; NC_000915.1. DR RefSeq; WP_000584956.1; NC_018939.1. DR ProteinModelPortal; O24861; -. DR DIP; DIP-3075N; -. DR IntAct; O24861; 16. DR MINT; MINT-159590; -. DR STRING; 85962.HP0016; -. DR PaxDb; O24861; -. DR EnsemblBacteria; AAD07092; AAD07092; HP_0016. DR GeneID; 899095; -. DR KEGG; heo:C694_00075; -. DR KEGG; hpy:HP0016; -. DR PATRIC; 20591225; VBIHelPyl33062_0014. DR OMA; KTKYYRA; -. DR OrthoDB; EOG6TN4BN; -. DR BioCyc; HPY:HP0016-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 64 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 87 AA; 10006 MW; 6D1C4FC80E47EFFD CRC64; MIILSASVKN LREISVKEKF LWLNAKSYLI SVFAPFILLP WIDLLSAFLL YLGFLALFSV LEFFDEDIAD IIVAKSKIKT KTKCYRA // ID O25000_HELPY Unreviewed; 450 AA. AC O25000; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07285.1}; GN OrderedLocusNames=HP_0209 {ECO:0000313|EMBL:AAD07285.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07285.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07285.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07285.1; -; Genomic_DNA. DR PIR; A64546; A64546. DR RefSeq; NP_207007.1; NC_000915.1. DR RefSeq; WP_000934263.1; NC_018939.1. DR ProteinModelPortal; O25000; -. DR STRING; 85962.HP0209; -. DR PaxDb; O25000; -. DR EnsemblBacteria; AAD07285; AAD07285; HP_0209. DR GeneID; 898932; -. DR KEGG; heo:C694_01050; -. DR KEGG; hpy:HP0209; -. DR PATRIC; 20591641; VBIHelPyl33062_0220. DR OMA; FEITHDT; -. DR OrthoDB; EOG69PQ03; -. DR BioCyc; HPY:HP0209-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 450 AA; 52641 MW; B20DFD518293D689 CRC64; MLNQKVWLGF LALHGVFLNA FEYQISARVG SFSRIAFNQS VINSKKGIYP TGSYVTTTGA LQVDLSLLPK GIENHKLGFG VGGEIGSLAY DSTKFLMDEA NPKAGFQPAN WYYMGRWEGY LMQHSQNWTR EQKAQNARPY VLYNLYLDYQ YKDIFGIKLG RYPSKALFLS GFNQGFEVFY RWKKFRIEWF STFGRALANE QSIRDFYAPV NYKQKINYGM HNLNLIYENK YIRVAPFIWF YPKNFNAPGF EITHDTKSYW ESLWRIQTTF YAWFPLYSDY LSKDYYRASL IGKKSASLFV FQRVHFRSYR FGWSVYKNFG NGNAQLGWNG SPVDPFYDTK DDTPYEDAYS NFYNANSITI NAFIGKSVKN LLVQLYGKLT YSPRADSQSL GVTFKYNLKK HIYLMLMFNG YQITMHKGYK VGFFTSGYNP DFAQTIQNRS YLMSSMSYRF // ID O26036_HELPY Unreviewed; 408 AA. AC O26036; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 85. DE SubName: Full=Glutamate permease (GltS) {ECO:0000313|EMBL:AAD08542.1}; GN OrderedLocusNames=HP_1506 {ECO:0000313|EMBL:AAD08542.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08542.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08542.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08542.1; -; Genomic_DNA. DR PIR; B64708; B64708. DR RefSeq; NP_208297.1; NC_000915.1. DR RefSeq; WP_001155986.1; NC_018939.1. DR ProteinModelPortal; O26036; -. DR DIP; DIP-3480N; -. DR IntAct; O26036; 1. DR MINT; MINT-176961; -. DR STRING; 85962.HP1506; -. DR PaxDb; O26036; -. DR EnsemblBacteria; AAD08542; AAD08542; HP_1506. DR GeneID; 899785; -. DR KEGG; heo:C694_07800; -. DR KEGG; hpy:HP1506; -. DR PATRIC; 20594427; VBIHelPyl33062_1582. DR eggNOG; ENOG4105D6U; Bacteria. DR eggNOG; COG0786; LUCA. DR KO; K03312; -. DR OMA; PTAMVNM; -. DR OrthoDB; EOG6FRCSX; -. DR BioCyc; HPY:HP1506-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015501; F:glutamate:sodium symporter activity; IEA:InterPro. DR InterPro; IPR004445; GltS. DR PANTHER; PTHR36178:SF1; PTHR36178:SF1; 1. DR Pfam; PF03616; Glt_symporter; 1. DR TIGRFAMs; TIGR00210; gltS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 121 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 187 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 246 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 252 272 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 284 303 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 309 330 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 342 364 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 376 403 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 408 AA; 43957 MW; 087E615825A549C3 CRC64; MQEIKLDIYA TLVCMVLVLL LGRYVISKVK FLRDYDIPEP VVGGVLVAFA IMLARQFYNF GLQFDSSLKD PLMLTFFITI GLSADFKSLQ KGGKMLAVFL LAVAGFVVCQ NAVGISTASL LGVNPLMGLL GGSIALVGGH GTSAAWANFF TQPPYNFSSS LEVGMACATF GLVSGGIIGG PVAKYLISKY KLEPKDTKEK DTLEGVVSKG FETPKEQRLI TESSFVETLA LIAIALLVGT FLSHLVPKSF TLPTFVWCLF VGVILRNTLS FFKIHSVFDR EVSVIGNVSL SLFLAYALMS VNLLELLKLA VPLAVILSVQ VVFMILYVVL VTFRVCGKDY DAAVLCAGHC GFGLGATPTA MVNMQTITNH YGPSHVAFIV VPLVGAFFVD IINALAIKGF LLLPFFPS // ID O25684_HELPY Unreviewed; 223 AA. AC O25684; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 123. DE SubName: Full=Response regulator {ECO:0000313|EMBL:AAD08088.1}; GN OrderedLocusNames=HP_1043 {ECO:0000313|EMBL:AAD08088.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08088.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08088.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2PLN} RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 1-119. RA Lee H.M., Hong E., Kim D.U., Byun J.S., Lee W., Cho H.S.; RT "Crystal Structure Analysis of Hp1043, an Orphan Resonse Regulator of RT H. Pylori."; RL Submitted (APR-2007) to the PDB data bank. CC -!- SIMILARITY: Contains OmpR/PhoB-type DNA-binding domain. CC {ECO:0000256|SAAS:SAAS00583175}. CC -!- SIMILARITY: Contains response regulatory domain. CC {ECO:0000256|SAAS:SAAS00122777}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08088.1; -; Genomic_DNA. DR PIR; C64650; C64650. DR RefSeq; NP_207833.1; NC_000915.1. DR RefSeq; WP_001264982.1; NC_018939.1. DR PDB; 2PLN; X-ray; 1.80 A; A=1-119. DR PDBsum; 2PLN; -. DR ProteinModelPortal; O25684; -. DR SMR; O25684; 1-223. DR IntAct; O25684; 3. DR STRING; 85962.HP1043; -. DR PaxDb; O25684; -. DR EnsemblBacteria; AAD08088; AAD08088; HP_1043. DR GeneID; 899578; -. DR KEGG; heo:C694_05395; -. DR KEGG; hpy:HP1043; -. DR PATRIC; 20593423; VBIHelPyl33062_1092. DR eggNOG; ENOG4105CK6; Bacteria. DR eggNOG; COG0745; LUCA. DR KO; K02483; -. DR OMA; VPEHCLL; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP1043-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001867; OmpR/PhoB-type_DNA-bd. DR InterPro; IPR016032; Sig_transdc_resp-reg_C-effctor. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00072; Response_reg; 1. DR Pfam; PF00486; Trans_reg_C; 1. DR SMART; SM00448; REC; 1. DR SMART; SM00862; Trans_reg_C; 1. DR SUPFAM; SSF46894; SSF46894; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS51755; OMPR_PHOB; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2PLN}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00582919}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transcription {ECO:0000256|SAAS:SAAS00275006}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00275006}; KW Two-component regulatory system {ECO:0000256|SAAS:SAAS00583142}. FT DOMAIN 2 112 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. FT DOMAIN 118 216 OmpR/PhoB-type DNA-binding. FT {ECO:0000259|PROSITE:PS51755}. SQ SEQUENCE 223 AA; 25468 MW; 2C794CAD9B2A61A2 CRC64; MRVLLIEKNS VLGGEIEKGL NVKGFMADVT ESLEDGEYLM DIRNYDLVMV SDKNALSFVS RIKEKHSSIV VLVSSDNPTS EEEVHAFEQG ADDYIAKPYR SIKALVARIE ARLRFWGSNV IEIGDLTISP DEEKIIYKGR EVEVKGKPFE VLTHLARHRD QIVSKEQLLD AIWEEPEMVT PNVIEVAINQ IRQKMDKPLG ISMVETVRRR GYRFCYPKPA CEE // ID O25764_HELPY Unreviewed; 103 AA. AC O25764; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08200.1}; GN OrderedLocusNames=HP_1145 {ECO:0000313|EMBL:AAD08200.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08200.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08200.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08200.1; -; Genomic_DNA. DR PIR; A64663; A64663. DR ProteinModelPortal; O25764; -. DR DIP; DIP-3653N; -. DR IntAct; O25764; 11. DR MINT; MINT-163054; -. DR STRING; 85962.HP1145; -. DR PaxDb; O25764; -. DR PRIDE; O25764; -. DR DNASU; 899683; -. DR EnsemblBacteria; AAD08200; AAD08200; HP_1145. DR PATRIC; 20593641; VBIHelPyl33062_1199. DR eggNOG; COG1432; LUCA. DR OMA; IANIQEC; -. DR OrthoDB; EOG6RVFVX; -. DR BioCyc; HPY:HP1145-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.1010; -; 1. DR InterPro; IPR021139; NYN_limkain-b1. DR InterPro; IPR029060; PIN_domain-like. DR Pfam; PF01936; NYN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 60 NYN. {ECO:0000259|Pfam:PF01936}. SQ SEQUENCE 103 AA; 11784 MW; 33A4C993C5FA9B56 CRC64; MHDITKLCYT KPLGCVVLFS KDTDLVPVLE SAWEKGFEVF IANIQECPNS VPSDLKKSCN VRERSVAEIV DNLPKNQHTP KKKNFSTNEP FNNPFKDQLF KKN // ID O25137_HELPY Unreviewed; 700 AA. AC O25137; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07442.1}; GN OrderedLocusNames=HP_0373 {ECO:0000313|EMBL:AAD07442.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07442.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07442.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07442.1; -; Genomic_DNA. DR PIR; E64566; E64566. DR RefSeq; NP_207171.1; NC_000915.1. DR RefSeq; WP_000943660.1; NC_018939.1. DR ProteinModelPortal; O25137; -. DR DIP; DIP-3540N; -. DR IntAct; O25137; 2. DR MINT; MINT-162449; -. DR STRING; 85962.HP0373; -. DR PaxDb; O25137; -. DR EnsemblBacteria; AAD07442; AAD07442; HP_0373. DR GeneID; 900296; -. DR KEGG; heo:C694_01895; -. DR KEGG; hpy:HP0373; -. DR PATRIC; 20591983; VBIHelPyl33062_0385. DR OMA; DYIGLAY; -. DR OrthoDB; EOG6W9X44; -. DR BioCyc; HPY:HP0373-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 700 AA; 78103 MW; 89BDC1B7F89EAD59 CRC64; MLRFVSKTIC LSLIGLFNPL EAFQKHQKDG FFIEAGFETG LLEGTQTKEE VITTQKIYEN PLTHPQTKEQ PKEQNKSDTA TPQSAYGKYY IPQSTILKNA TALFTTDKIE NGLTFYSQNP VYANMVNGSV TIQNFLPYNL NNVELSFKDA QGKVVNLGVI ETIPKQSQIT LPASLFNDSE FEQADSFNYQ QLQATATQFS DANTQSLFQK LSKITTNVTM SYENADTNNF KGNCHDCVSD FTPQTAEELT NLMLDMIAVF DSKSWEEAVL NAPFQFSNSS SECGSDFPKC VNPFNNGRVA PIYEKYVLTP QSVIDAFRRT INLEVNILKS GFVGLGYELD DNDGNLGIEA SALNPEKLFG KTLNKVDIVE LRDIIHEFSH TKGYTHNGNM TYQRVRLCQE NGGAIQECEG GKEELVNGKE ELKFTNGKEV KDQDGYTYDV CSFYKDNHQV YTASNYPNSI YTNCAQVPAG LIGVTTAVWQ QLINQNALPI NFANLNSPTN HLNAGLNAQN FATSIVSAIA QNFSTTSTTT YRSSSKNFRS PILGVNVKIG YQHYFNDYIG LAYYGIIKYN YAKTNDEKIQ QLSYGGGMDV LFDFITTYAN KKQDNPTKKV FASSFGVFGG LRGLYNSYYV FNQVKGSGNL DIVTGFNYRY KHSKYSVGIS VPLIQSGIKI ASNNGIYANS VVLNEGGSHF KVFFNYGWIF // ID O24975_HELPY Unreviewed; 87 AA. AC O24975; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07241.1}; GN OrderedLocusNames=HP_0168 {ECO:0000313|EMBL:AAD07241.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07241.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07241.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07241.1; -; Genomic_DNA. DR PIR; H64540; H64540. DR RefSeq; NP_206967.1; NC_000915.1. DR RefSeq; WP_001127819.1; NC_018939.1. DR ProteinModelPortal; O24975; -. DR IntAct; O24975; 2. DR STRING; 85962.HP0168; -. DR PaxDb; O24975; -. DR EnsemblBacteria; AAD07241; AAD07241; HP_0168. DR GeneID; 900143; -. DR KEGG; heo:C694_00830; -. DR KEGG; hpy:HP0168; -. DR PATRIC; 20591557; VBIHelPyl33062_0178. DR OMA; ERHYLNF; -. DR OrthoDB; EOG6TBHKR; -. DR BioCyc; HPY:HP0168-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 35 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 87 AA; 10354 MW; 6778F5FF2C6ADA86 CRC64; MPLETITLAN IYEEQGFFEE ALQIYINILK KTPNHAEALK QMKRLEKIQK NGAPFKHDAL LERHYLNFIK GDRLSVENLE KWLVEWN // ID O25207_HELPY Unreviewed; 162 AA. AC O25207; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07537.1}; GN OrderedLocusNames=HP_0460 {ECO:0000313|EMBL:AAD07537.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07537.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07537.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07537.1; -; Genomic_DNA. DR PIR; D64577; D64577. DR ProteinModelPortal; O25207; -. DR IntAct; O25207; 2. DR STRING; 85962.HP0460; -. DR PaxDb; O25207; -. DR EnsemblBacteria; AAD07537; AAD07537; HP_0460. DR KEGG; heo:C694_02355; -. DR PATRIC; 20592189; VBIHelPyl33062_0483. DR KO; K12050; -. DR OrthoDB; EOG6ZSP6Q; -. DR BioCyc; HPY:HP0460-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 162 AA; 19047 MW; 42A2492BE1FEB66B CRC64; MSNLQELREH LKELENSFEI GSFTKENIKE YAKCFFMSLS MFLEEQEKNQ QEEFLEQDTK ENQEELIKNI QTSIAKNQEL EKISFEKWEN KIQERVLPKL KRIVTHKLQE SITSSINTQL ESFKKDELDL SSVFEIQRKN TQIAYRLAIG GLIGIIALSS QI // ID O25636_HELPY Unreviewed; 237 AA. AC O25636; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08034.1}; GN OrderedLocusNames=HP_0986 {ECO:0000313|EMBL:AAD08034.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08034.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08034.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08034.1; -; Genomic_DNA. DR PIR; B64643; B64643. DR RefSeq; NP_207777.1; NC_000915.1. DR RefSeq; WP_010875575.1; NC_018939.1. DR ProteinModelPortal; O25636; -. DR STRING; 85962.HP0986; -. DR PaxDb; O25636; -. DR PRIDE; O25636; -. DR EnsemblBacteria; AAD08034; AAD08034; HP_0986. DR GeneID; 899519; -. DR KEGG; hpy:HP0986; -. DR PATRIC; 20593297; VBIHelPyl33062_1030. DR eggNOG; ENOG4108MPE; Bacteria. DR eggNOG; ENOG4110QBX; LUCA. DR OMA; YVAECKS; -. DR OrthoDB; EOG6VF30N; -. DR BioCyc; HPY:HP0986-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR015093; DUF1887. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR Pfam; PF09002; DUF1887; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 237 AA; 27542 MW; B9EE032F2C59415D CRC64; METFFSLHVP NRRIKQNGII DEKSLEKIQE RKNLSSLLYE HRARIIPLYK RINENHAKNK TINICENNLK LFYKDHQVCV NIDKKEIKLR YSEDEDDFRK YIIGGWFEEY IYCELLELLD KQVICDLRLN MILGVGNTNA TQGDKHPIYT ELDIAFSDGK NLYVAECKSG ELKNKGVLAA LSADAQIFGG ANAKCILISI DGNLGQVLQE KVKILNIEFI FKYFKKNIEN YINNSRR // ID O25180_HELPY Unreviewed; 55 AA. AC O25180; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07513.1}; GN OrderedLocusNames=HP_0430 {ECO:0000313|EMBL:AAD07513.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07513.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07513.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07513.1; -; Genomic_DNA. DR PIR; F64573; F64573. DR RefSeq; NP_207228.1; NC_000915.1. DR RefSeq; WP_010875480.1; NC_000915.1. DR ProteinModelPortal; O25180; -. DR STRING; 85962.HP0430; -. DR PaxDb; O25180; -. DR PRIDE; O25180; -. DR EnsemblBacteria; AAD07513; AAD07513; HP_0430. DR GeneID; 898877; -. DR KEGG; hpy:HP0430; -. DR PATRIC; 20592119; VBIHelPyl33062_0448. DR OrthoDB; EOG6SFPF6; -. DR BioCyc; HPY:HP0430-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 55 AA; 6108 MW; FE9FA0A9036F5733 CRC64; MLLSDGHFTE EIQVKSSVAF GADANMIKLK KISSKVFDSA EIFQVLHFMK KSGCD // ID O26068_HELPY Unreviewed; 312 AA. AC O26068; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=ToxR-activated gene (TagE) {ECO:0000313|EMBL:AAD08582.1}; GN OrderedLocusNames=HP_1543 {ECO:0000313|EMBL:AAD08582.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08582.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08582.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08582.1; -; Genomic_DNA. DR PIR; G64712; G64712. DR RefSeq; NP_208334.1; NC_000915.1. DR RefSeq; WP_000478084.1; NC_018939.1. DR ProteinModelPortal; O26068; -. DR DIP; DIP-3309N; -. DR IntAct; O26068; 2. DR MINT; MINT-187961; -. DR STRING; 85962.HP1543; -. DR PaxDb; O26068; -. DR DNASU; 899748; -. DR EnsemblBacteria; AAD08582; AAD08582; HP_1543. DR GeneID; 899748; -. DR KEGG; heo:C694_07995; -. DR KEGG; hpy:HP1543; -. DR PATRIC; 20594509; VBIHelPyl33062_1622. DR eggNOG; ENOG4105DR5; Bacteria. DR eggNOG; COG0739; LUCA. DR OMA; LIVMVTD; -. DR OrthoDB; EOG62NX36; -. DR BioCyc; HPY:HP1543-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011055; Dup_hybrid_motif. DR InterPro; IPR016047; Peptidase_M23. DR Pfam; PF01551; Peptidase_M23; 1. DR SUPFAM; SSF51261; SSF51261; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 51 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 168 264 Peptidase_M23. FT {ECO:0000259|Pfam:PF01551}. SQ SEQUENCE 312 AA; 35628 MW; 371E07109207C83E CRC64; MFLDRRLIVM VTDSKGSRYI NVHILFRQIG LYALLSVVGS LLFLGISLLV LNQEIKNIDK QHALITKEFE KKKETNEKLS LQMDEFLDDL QLSGERINDL EEVVGVNRPE EEKEEGNFSS RLDVAGITGL QKSFIMRLIP NDYPLESYRR VSAAFNKRIH PILHVLHNHT GLDLSTAINT PVYASASGVV GLASKGWNGG YGNLIKVFHP FGFKTYYAHL NKIVVKTGEF VKKGQLIGYS GNTGMSTGPH LHYEVRFLDQ PINPMSFTKW NMKDFEEVFN KERSIRWQSL ITIINRLMQK QDQRLSSLKA QK // ID O26104_HELPY Unreviewed; 262 AA. AC O26104; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 96. DE RecName: Full=Flagellar basal-body rod protein FlgG {ECO:0000256|RuleBase:RU362116}; DE AltName: Full=Distal rod protein {ECO:0000256|RuleBase:RU362116}; GN OrderedLocusNames=HP_1585 {ECO:0000313|EMBL:AAD08623.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08623.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08623.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBUNIT: The basal body constitutes a major portion of the CC flagellar organelle and consists of four rings (L,P,S, and M) CC mounted on a central rod. The rod consists of about 26 subunits of CC FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to CC build up the proximal portion of the rod with about 6 subunits CC each. {ECO:0000256|RuleBase:RU362116}. CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|RuleBase:RU362116}. CC -!- SIMILARITY: Belongs to the flagella basal body rod proteins CC family. {ECO:0000256|RuleBase:RU362116, CC ECO:0000256|SAAS:SAAS00560878}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08623.1; -; Genomic_DNA. DR PIR; A64718; A64718. DR RefSeq; NP_208376.1; NC_000915.1. DR RefSeq; WP_000946438.1; NC_018939.1. DR ProteinModelPortal; O26104; -. DR SMR; O26104; 168-222. DR IntAct; O26104; 4. DR STRING; 85962.HP1585; -. DR PaxDb; O26104; -. DR DNASU; 899706; -. DR EnsemblBacteria; AAD08623; AAD08623; HP_1585. DR GeneID; 899706; -. DR KEGG; heo:C694_08210; -. DR KEGG; hpy:HP1585; -. DR PATRIC; 20594599; VBIHelPyl33062_1667. DR eggNOG; ENOG4105CGA; Bacteria. DR eggNOG; COG4786; LUCA. DR KO; K02392; -. DR OMA; VDQNTAT; -. DR OrthoDB; EOG61307X; -. DR BioCyc; HPY:HP1585-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009426; C:bacterial-type flagellum basal body, distal rod; IEA:InterPro. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR001444; Flag_bb_rod_N. DR InterPro; IPR019776; Flagellar_basal_body_rod_CS. DR InterPro; IPR020013; Flagellar_FlgE/F/G. DR InterPro; IPR010930; Flg_bb/hook_C_dom. DR InterPro; IPR012834; FlgG_G_neg. DR Pfam; PF00460; Flg_bb_rod; 1. DR Pfam; PF06429; Flg_bbr_C; 1. DR TIGRFAMs; TIGR03506; FlgEFG_subfam; 2. DR TIGRFAMs; TIGR02488; flgG_G_neg; 1. DR PROSITE; PS00588; FLAGELLA_BB_ROD; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|RuleBase:RU362116}; KW Cell projection {ECO:0000313|EMBL:AAD08623.1}; KW Cilium {ECO:0000313|EMBL:AAD08623.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD08623.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 35 Flg_bb_rod. {ECO:0000259|Pfam:PF00460}. FT DOMAIN 182 260 Flg_bbr_C. {ECO:0000259|Pfam:PF06429}. SQ SEQUENCE 262 AA; 28075 MW; 6A4C021646CF7034 CRC64; MLRSLYSATS GMLAQQTHID TTSNNIANVN TTGFKKSRAD FNDLFYQAMQ YAGTNTSNTT LSPDGMEVGL GVRPSAITKM FSQGSPKETE NNLDVAITGK GFFQVQLPDG TTAYTRSGNF KLDEQGNLVT SEGYLLIPQI TLPEDTTQVN IGVDGTVSVT QGLQTTSNVI GQITLANFVN PAGLHSMGDN LFSITNASGE AIVGNPDSQG LGKLRQGFLE LSNVRLVEEM TDLITAQRAY EANSKSIQTA DAMLQTVNSL KR // ID O24978_HELPY Unreviewed; 255 AA. AC O24978; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 101. DE RecName: Full=Flagellar biosynthetic protein FliR {ECO:0000256|RuleBase:RU362071}; GN OrderedLocusNames=HP_0173 {ECO:0000313|EMBL:AAD07238.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07238.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07238.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Role in flagellar biosynthesis. CC {ECO:0000256|RuleBase:RU362071}. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU362071}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU362071}. Bacterial flagellum basal body CC {ECO:0000256|RuleBase:RU362071}. CC -!- SIMILARITY: Belongs to the FliR/MopE/SpaR family. CC {ECO:0000256|RuleBase:RU362071}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07238.1; -; Genomic_DNA. DR PIR; E64541; E64541. DR RefSeq; NP_206972.1; NC_000915.1. DR RefSeq; WP_000883720.1; NC_018939.1. DR ProteinModelPortal; O24978; -. DR STRING; 85962.HP0173; -. DR PaxDb; O24978; -. DR EnsemblBacteria; AAD07238; AAD07238; HP_0173. DR GeneID; 899032; -. DR KEGG; heo:C694_00855; -. DR KEGG; hpy:HP0173; -. DR PATRIC; 20591567; VBIHelPyl33062_0183. DR eggNOG; ENOG4105D19; Bacteria. DR eggNOG; COG1684; LUCA. DR KO; K02421; -. DR OMA; FVDHSLR; -. DR OrthoDB; EOG6FBWVR; -. DR BioCyc; HPY:HP0173-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:UniProtKB-SubCell. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0044780; P:bacterial-type flagellum assembly; IEA:InterPro. DR GO; GO:0006605; P:protein targeting; IEA:InterPro. DR InterPro; IPR006303; FliR. DR InterPro; IPR002010; T3SS_IM_R. DR Pfam; PF01311; Bac_export_1; 1. DR PRINTS; PR00953; TYPE3IMRPROT. DR TIGRFAMs; TIGR01400; fliR; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|RuleBase:RU362071}; KW Cell membrane {ECO:0000256|RuleBase:RU362071}; KW Cell projection {ECO:0000313|EMBL:AAD07238.1}; KW Cilium {ECO:0000313|EMBL:AAD07238.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07238.1}; KW Membrane {ECO:0000256|RuleBase:RU362071}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU362071}; KW Transmembrane helix {ECO:0000256|RuleBase:RU362071}. FT TRANSMEM 40 58 Helical. {ECO:0000256|RuleBase:RU362071}. FT TRANSMEM 70 98 Helical. {ECO:0000256|RuleBase:RU362071}. FT TRANSMEM 128 150 Helical. {ECO:0000256|RuleBase:RU362071}. FT TRANSMEM 175 201 Helical. {ECO:0000256|RuleBase:RU362071}. FT TRANSMEM 213 236 Helical. {ECO:0000256|RuleBase:RU362071}. SQ SEQUENCE 255 AA; 28014 MW; 0EAC7552ED31279A CRC64; MLDFIQELST PHVRDFFLLF LRVSGVLSFF PFFENHLVPL SVRGALSLYV SAIFYPTLEF SNAAYTPEGF IIACLCELFL GVCASVFLQI VFASLVFATD SISFSMGLTM ASAYDPISGS QKPIVGQALL LLAILILLDL SFHHQIILFV DHSLKAVPLG QFVFEPALAK NIVKAFSHLF VIGFSMAFPI LCLVLLSDII FGMIMKTHPQ FNLLAIGFPV KIAIGFVGII LIASAIMGRF KEEISLAFSA ISKIF // ID O24900_HELPY Unreviewed; 813 AA. AC O24900; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07137.1}; GN OrderedLocusNames=HP_0060 {ECO:0000313|EMBL:AAD07137.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07137.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07137.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07137.1; -; Genomic_DNA. DR PIR; D64527; D64527. DR RefSeq; NP_206860.1; NC_000915.1. DR RefSeq; WP_000258489.1; NC_018939.1. DR ProteinModelPortal; O24900; -. DR DIP; DIP-3455N; -. DR IntAct; O24900; 3. DR MINT; MINT-178446; -. DR STRING; 85962.HP0060; -. DR PaxDb; O24900; -. DR EnsemblBacteria; AAD07137; AAD07137; HP_0060. DR GeneID; 899096; -. DR KEGG; heo:C694_00285; -. DR KEGG; hpy:HP0060; -. DR PATRIC; 20591321; VBIHelPyl33062_0062. DR eggNOG; ENOG4105EDJ; Bacteria. DR eggNOG; ENOG410XR05; LUCA. DR OMA; SKIPPYL; -. DR OrthoDB; EOG6HTNT3; -. DR BioCyc; HPY:HP0060-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 813 AA; 93129 MW; 3118725A65C3C59F CRC64; MVTPLKSLKL PIGHPLVEIL CELSLNNKAV FNEEAPINFK KEVSEEEKIK FKQALRVLHA IVNNEASLRY LSDDNQKFME GLAQADKITN EQIEKTLEIV SYSDVDVDFE AFKEMMLKVD NIAVGLKSYS QSQLLDLNGG HWDLDVPSLS KESVTFRFDN LPKEEIGGEE IEKNFYARSS LKDVNKQGVV AIDFGTKSTT AAYMDNNGKY RLLSIGGDVD IESLQKYENP TIVEFRYKEK FLKDYNALSH RPFTEKNDIQ VAHEAQKELS SAQGNHFYRF FSQLKQWAGA DEKRNFRDLI EDFSLESFTN CTDFNPIEIY AYCIGRCINN MENGVFLKYF LSYPIKYEKH QAEKIRESFE KGLKKSLPRH VFDDEKTAKM FKVELKASEP CAYAISALKS YGFDKFAKLD KPIYYGVFDF GGGTTDFDFG KWEKSANPKF AYKMTHFSNG GDKYLGGENL LELLAWEMYA QNFQELKAKD VVIAKPNYDR IDTQRFGSFM QNSREARLNL QTIASNLRPF LEKLDANIIE AIEENEEFEI EGFEKEFKVQ LLDRNGGDSP VEDFKVDYKE LLNLLKDKID DGVKNFFAGF SKVMAENIDN QCRAFHIFLG GNASKSVLVK QAFENAKEEQ LKAYKQKTSK DDFTFILYEP LGTEASDKQI LELTGEDVSN KPAYLKPTCK TGVAFGLLES RPKAGGIERP SIDFNPVFKY DLGIEREGKF HTRISRDSLK PNEYQIFQTK EEWGGFDGLE IRYSDKSLAN TNTLDIEDTQ LIFIALEEHE EVDVKVCSID SQSIKVGLFK DNQLIYESEA EKL // ID O25828_HELPY Unreviewed; 180 AA. AC O25828; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08280.1}; GN OrderedLocusNames=HP_1230 {ECO:0000313|EMBL:AAD08280.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08280.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08280.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2UVP} RP X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS) IN COMPLEX WITH CALCIUM. RX PubMed=17683397; DOI=10.1111/j.1365-2958.2007.05843.x; RA Natrajan G., Hall D.R., Thompson A.C., Gutsche I., Terradot L.; RT "Structural similarity between the DnaA-binding proteins HobA (HP1230) RT from Helicobacter pylori and DiaA from Escherichia coli."; RL Mol. Microbiol. 65:995-1005(2007). RN [3] {ECO:0000213|PDB:2WP0} RP X-RAY CRYSTALLOGRAPHY (2.67 ANGSTROMS). RX PubMed=19940251; DOI=10.1073/pnas.0908966106; RA Natrajan G., Noirot-Gros M.F., Zawilak-Pawlik A., Kapp U., RA Terradot L.; RT "The structure of a DnaA/HobA complex from Helicobacter pylori RT provides insight into regulation of DNA replication in bacteria."; RL Proc. Natl. Acad. Sci. U.S.A. 106:21115-21120(2009). CC -!- INTERACTION: CC O26057:dnaA; NbExp=4; IntAct=EBI-527984, EBI-527994; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08280.1; -; Genomic_DNA. DR PIR; F64673; F64673. DR RefSeq; NP_208022.1; NC_000915.1. DR RefSeq; WP_000788231.1; NC_018939.1. DR PDB; 2UVP; X-ray; 1.70 A; A/B/C/D=1-180. DR PDB; 2WP0; X-ray; 2.67 A; A/B=1-180. DR PDBsum; 2UVP; -. DR PDBsum; 2WP0; -. DR ProteinModelPortal; O25828; -. DR SMR; O25828; 1-180. DR DIP; DIP-3677N; -. DR IntAct; O25828; 2. DR MINT; MINT-168551; -. DR STRING; 85962.HP1230; -. DR PaxDb; O25828; -. DR EnsemblBacteria; AAD08280; AAD08280; HP_1230. DR GeneID; 900229; -. DR KEGG; heo:C694_06350; -. DR KEGG; hpy:HP1230; -. DR PATRIC; 20593831; VBIHelPyl33062_1286. DR eggNOG; ENOG4109060; Bacteria. DR eggNOG; ENOG4111NMV; LUCA. DR OMA; ELTYQNP; -. DR OrthoDB; EOG6N9498; -. DR BioCyc; HPY:HP1230-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR021011; HobA. DR Pfam; PF12163; HobA; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2UVP, ECO:0000213|PDB:2WP0}; KW Calcium {ECO:0000213|PDB:2UVP}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000213|PDB:2UVP}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT METAL 140 140 Calcium. {ECO:0000213|PDB:2UVP}. FT METAL 143 143 Calcium. {ECO:0000213|PDB:2UVP}. SQ SEQUENCE 180 AA; 21003 MW; 91FE4AE113B32E15 CRC64; MKNFYDWIKE FVRDQGEFIA QQSGWLELER SSYAKLIAQT ISHVLNGGSL LVSADSSRHW FLNYILSNLN PKDLKERPLL SVIDFNASSF YPKNDANLSL ATIEMTYQNP MFWHVGKIEN EGLKTILLSK IPSFLWLFEE LKEDCLLLKE HDSLLDYKLL QLFKLFENAL FSVLYNKVTL // ID O25362_HELPY Unreviewed; 560 AA. AC O25362; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Soluble lytic murein transglycosylase (Slt) {ECO:0000313|EMBL:AAD07706.1}; GN OrderedLocusNames=HP_0645 {ECO:0000313|EMBL:AAD07706.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07706.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07706.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07706.1; -; Genomic_DNA. DR PIR; E64600; E64600. DR RefSeq; NP_207439.1; NC_000915.1. DR RefSeq; WP_001210646.1; NC_018939.1. DR ProteinModelPortal; O25362; -. DR DIP; DIP-3509N; -. DR IntAct; O25362; 6. DR MINT; MINT-174744; -. DR STRING; 85962.HP0645; -. DR CAZy; GH23; Glycoside Hydrolase Family 23. DR PaxDb; O25362; -. DR EnsemblBacteria; AAD07706; AAD07706; HP_0645. DR GeneID; 899988; -. DR KEGG; heo:C694_03335; -. DR KEGG; hpy:HP0645; -. DR PATRIC; 20592575; VBIHelPyl33062_0676. DR eggNOG; ENOG4107S2U; Bacteria. DR eggNOG; COG0741; LUCA. DR KO; K08309; -. DR OMA; QIMPFNV; -. DR OrthoDB; EOG6S52QZ; -. DR BioCyc; HPY:HP0645-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR023346; Lysozyme-like_dom. DR InterPro; IPR008258; Transglycosylase_SLT_dom_1. DR Pfam; PF01464; SLT; 1. DR SUPFAM; SSF53955; SSF53955; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 396 507 SLT. {ECO:0000259|Pfam:PF01464}. SQ SEQUENCE 560 AA; 65440 MW; 93D861EAFF22E929 CRC64; MRFFTLFFIG MLGVGFSQTE LNLKDLEKKP AGIVRDYYLW RYISDKKTSL ENAKKAYELT QNKNNALQKA MQEKGSDNAE KNPDVKLPED IYCKQTALES MLETTDTFQA SCIAIALKSK IRDFDKIPIE TLKPLQIKIK EAYPVLYEEL EILQSKHVSA SLFKANAQVF SALFNHLSYE KKLQIFEKHI PIKELNRLLD ENYPAFNRLI YQVILDPKLD HFKDALTKSN ATHSNAQTFF ILGINEILRK KPSKALKYFE RSEAVVKDDD FSKDRAIFWQ YLVSKKKKTL ERLSQSPALN LYSLYASRKL KTTPSYRIIS RIQNLSQEDP PFNTYDPFSW QIFKEKTLSL KDEGAFNAML KSLYYEKSAP ELTYLLSQRN KDKIYYYLSP YEGIIEWQNT DEKAMAYAIA RQESFLLPAV ISRSFALGLM QIMPFNVGPF AKSLGMDNID LNDMFNPNIA LKFGNYYLNH LKKEFNHPLF VAYAYNAGPG FLRRWLESSK RFKEKNHFEP WLSMELMPYS ETRMYGFRVM LNYLIYQEIF GNFIPIDGFL EQTLNSKDKP // ID O25949_HELPY Unreviewed; 322 AA. AC O25949; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 112. DE RecName: Full=Arginase {ECO:0000256|RuleBase:RU361159}; DE EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159}; GN OrderedLocusNames=HP_1399 {ECO:0000313|EMBL:AAD08436.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08436.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08436.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4G3H} RP X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) IN COMPLEX WITH MANGANESE. RA Zhang J., Zhang X., Li D., Hu Y., Zou Q., Wang D.; RT "Structure and function studies on Helicobacter pylori arginase."; RL Submitted (JUL-2012) to the PDB data bank. CC -!- CATALYTIC ACTIVITY: L-arginine + H(2)O = L-ornithine + urea. CC {ECO:0000256|RuleBase:RU361159}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|RuleBase:RU361159}; CC Note=Binds 2 manganese ions per subunit. CC {ECO:0000256|RuleBase:RU361159}; CC -!- SIMILARITY: Belongs to the arginase family. CC {ECO:0000256|RuleBase:RU361159}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08436.1; -; Genomic_DNA. DR PIR; G64694; G64694. DR RefSeq; NP_208190.1; NC_000915.1. DR RefSeq; WP_000604403.1; NC_018939.1. DR PDB; 4G3H; X-ray; 2.20 A; A/B/C/D=1-322. DR PDBsum; 4G3H; -. DR ProteinModelPortal; O25949; -. DR DIP; DIP-3188N; -. DR IntAct; O25949; 3. DR MINT; MINT-178538; -. DR STRING; 85962.HP1399; -. DR PaxDb; O25949; -. DR EnsemblBacteria; AAD08436; AAD08436; HP_1399. DR GeneID; 899897; -. DR KEGG; heo:C694_07230; -. DR KEGG; hpy:HP1399; -. DR PATRIC; 20594187; VBIHelPyl33062_1464. DR eggNOG; ENOG41066UZ; Bacteria. DR eggNOG; COG0010; LUCA. DR KO; K01476; -. DR OMA; SSEHANM; -. DR OrthoDB; EOG6BKJ5H; -. DR BioCyc; HPY:HP1399-MONOMER; -. DR BRENDA; 3.5.3.1; 2604. DR SABIO-RK; O25949; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004053; F:arginase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006525; P:arginine metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.800.10; -; 1. DR InterPro; IPR014033; Arginase. DR InterPro; IPR006035; Ureohydrolase. DR InterPro; IPR023696; Ureohydrolase_domain. DR PANTHER; PTHR11358; PTHR11358; 2. DR Pfam; PF00491; Arginase; 1. DR TIGRFAMs; TIGR01229; rocF_arginase; 1. DR PROSITE; PS51409; ARGINASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4G3H}; KW Arginine metabolism {ECO:0000256|RuleBase:RU361159}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|RuleBase:RU361159}; KW Manganese {ECO:0000213|PDB:4G3H, ECO:0000256|RuleBase:RU361159}; KW Metal-binding {ECO:0000213|PDB:4G3H, ECO:0000256|RuleBase:RU361159}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT METAL 91 91 Manganese 1. {ECO:0000213|PDB:4G3H}. FT METAL 116 116 Manganese 1. {ECO:0000213|PDB:4G3H}. FT METAL 116 116 Manganese 2. {ECO:0000213|PDB:4G3H}. FT METAL 118 118 Manganese 2; via pros nitrogen. FT {ECO:0000213|PDB:4G3H}. FT METAL 120 120 Manganese 1. {ECO:0000213|PDB:4G3H}. FT METAL 234 234 Manganese 1. {ECO:0000213|PDB:4G3H}. FT METAL 234 234 Manganese 2. {ECO:0000213|PDB:4G3H}. FT METAL 236 236 Manganese 2. {ECO:0000213|PDB:4G3H}. SQ SEQUENCE 322 AA; 36925 MW; 25918577C4202113 CRC64; MILVGLEAEL GASKRGTDKG VRRLREALSA THGDVIKGMQ TITQERCVLY KEFRYAKNFE DYYLFCKENL IPCMKEVFEK KEFPLILSSE HANMFGIFQA FRSVHKDKKI GILYLDAHAD IHTAYDSDSK HIHGMPLGMV LNRVRSGFNR MSESEEKAWQ KLCSLGLEKG GLEIDPKCLV YFGVRSTEQS ERDVIRELQI PLFSVDAIRE NMQEVVQKTK ESLKAVDIIY LSLDLDIMDG KLFTSTGVRE NNGLSFDELK QLLGLLLESF KDRLKAVEVT EYNPTVSIKH NNEEEKQVLE ILDLIINSCK IKDKKHSFAR SY // ID O25199_HELPY Unreviewed; 518 AA. AC O25199; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07515.1}; GN OrderedLocusNames=HP_0452 {ECO:0000313|EMBL:AAD07515.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07515.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07515.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07515.1; -; Genomic_DNA. DR PIR; D64576; D64576. DR ProteinModelPortal; O25199; -. DR DIP; DIP-3229N; -. DR IntAct; O25199; 10. DR MINT; MINT-159674; -. DR STRING; 85962.HP0452; -. DR PaxDb; O25199; -. DR PRIDE; O25199; -. DR EnsemblBacteria; AAD07515; AAD07515; HP_0452. DR PATRIC; 20592163; VBIHelPyl33062_0470. DR eggNOG; ENOG4108MV5; Bacteria. DR eggNOG; COG1401; LUCA. DR OMA; YLKVETF; -. DR OrthoDB; EOG62NX3P; -. DR BioCyc; HPY:HP0452-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 27 123 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 518 AA; 60507 MW; CBC2D5006E1D760F CRC64; MADETNALRQ KNRELNKKID WQKDYDREKL ERDNRDLEQC KEDLLAANEN LRNRIQEWEN EKNKLDPRDE RIKELEEEKR ELEGILAQKE NAEQKYNTLS VKNKQLEAEL DMLNEKFEKL KNMYAGVEDF EKRQKNIKEQ IVKTNPKVLG APSNEVEELA FLERIEKGMQ EFNVFYPKRL LYMFHTALKS TSLSPLSVLS GVSGTGKSEL PKLYVHFGGL NFLSIAVQPT WDSPESLMGY FHAIENKFDA TEFLRFFIQT TLSNNEEPYG LKEAMSIVLL DEMNLAHIEL YFAEFLSKLE IKCSQETNIS IKLGTGLTWE LPLGDNLLFV GTMNEDESTK MLSDKVLDRA FCLNFERPKI LKGKQQKPIP SNDGYLKVET FNRWINKKGD QEAKLEGKYK KLTEEINERL DACGRSIGHR VWQSMSTYMH NHPLVLHASD KNKALQFAYE ECLVLKIFPK LRGVQTRNNQ HLTKIQDLLK DFSVSSDFKQ AMENDFKEFV FNSTNYLNNV EYEKLLKK // ID O26048_HELPY Unreviewed; 250 AA. AC O26048; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08564.1}; GN OrderedLocusNames=HP_1519 {ECO:0000313|EMBL:AAD08564.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08564.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08564.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08564.1; -; Genomic_DNA. DR PIR; G64709; G64709. DR ProteinModelPortal; O26048; -. DR STRING; 85962.HP1519; -. DR PaxDb; O26048; -. DR PRIDE; O26048; -. DR EnsemblBacteria; AAD08564; AAD08564; HP_1519. DR PATRIC; 20594455; VBIHelPyl33062_1596. DR eggNOG; ENOG4108K3P; Bacteria. DR eggNOG; ENOG410XW40; LUCA. DR OrthoDB; EOG6PP9HF; -. DR BioCyc; HPY:HP1519-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 172 203 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 250 AA; 30220 MW; CB5A091BACAA7377 CRC64; MQECRQFKLL VMTHNFDFYR TLESRLSIPR KQIKMIRKND AREIIFEKGG YLKSFIKWIR DSEDDKDFFT LIPFVRNLIE YTSFQADKNN NYIKLTSCLH MKKDTKDIQI QDISKIFDSV FGAERKKKKI EEYNSKLYFE TIYNIAEKIY NDKDRNRIEL QNKIIFSIVI RLKSEEWMLN KLNQEFESTN NQTRELYDAT KKELSDDEKR IIQKVLMITP ENIHINSFMF EPILDTSLDH LYTCLEKVKI // ID O25752_HELPY Unreviewed; 193 AA. AC O25752; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08182.1}; GN OrderedLocusNames=HP_1127 {ECO:0000313|EMBL:AAD08182.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08182.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08182.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08182.1; -; Genomic_DNA. DR PIR; G64660; G64660. DR ProteinModelPortal; O25752; -. DR STRING; 85962.HP1127; -. DR PaxDb; O25752; -. DR PRIDE; O25752; -. DR EnsemblBacteria; AAD08182; AAD08182; HP_1127. DR PATRIC; 20593599; VBIHelPyl33062_1179. DR OMA; KAYQEWY; -. DR OrthoDB; EOG65N18S; -. DR BioCyc; HPY:HP1127-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR006260; TonB_C. DR Pfam; PF13103; TonB_2; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 106 187 TonB_C. {ECO:0000259|Pfam:PF13103}. FT COILED 29 89 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 193 AA; 22697 MW; 22028E4971A27E5F CRC64; MPTDKEGDFI DPKEQEESLE NIFSSLNDFQ EKTDANAQKN EQKNEQEEEQ RRLKEQQRLR KNQKNQEMLK GLQQNLNQFA QKLESVKNKT LDLQIPKQDG VDEKAYQEWY AQIYQILYKG WKGVFYHKAS VSALIMIAKD GEFDYTILSY SDFKDYNKSV MTLLNDLKKV DFPPYPGGSM ISIQVNFTTK EEQ // ID O24945_HELPY Unreviewed; 33 AA. AC O24945; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07213.1}; GN OrderedLocusNames=HP_0131 {ECO:0000313|EMBL:AAD07213.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07213.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07213.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07213.1; -; Genomic_DNA. DR PIR; C64536; C64536. DR RefSeq; NP_206931.1; NC_000915.1. DR RefSeq; WP_001146793.1; NC_018939.1. DR ProteinModelPortal; O24945; -. DR PaxDb; O24945; -. DR EnsemblBacteria; AAD07213; AAD07213; HP_0131. DR GeneID; 898854; -. DR KEGG; heo:C694_00645; -. DR KEGG; hpy:HP0131; -. DR BioCyc; HPY:HP0131-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 33 AA; 4272 MW; 4FC427E4DBFB899E CRC64; MPYPFMSFKQ TFYYKMESKT MKERFKTLFF KIF // ID O25128_HELPY Unreviewed; 345 AA. AC O25128; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07430.1}; GN OrderedLocusNames=HP_0362 {ECO:0000313|EMBL:AAD07430.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07430.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07430.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07430.1; -; Genomic_DNA. DR PIR; B64565; B64565. DR RefSeq; NP_207160.1; NC_000915.1. DR RefSeq; WP_000589921.1; NC_018939.1. DR ProteinModelPortal; O25128; -. DR STRING; 85962.HP0362; -. DR PaxDb; O25128; -. DR EnsemblBacteria; AAD07430; AAD07430; HP_0362. DR GeneID; 898875; -. DR KEGG; heo:C694_01835; -. DR KEGG; hpy:HP0362; -. DR PATRIC; 20591959; VBIHelPyl33062_0374. DR eggNOG; ENOG4108UGZ; Bacteria. DR eggNOG; COG0795; LUCA. DR KO; K07091; -. DR OMA; GIVTYRY; -. DR OrthoDB; EOG6PS5T8; -. DR BioCyc; HPY:HP0362-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR005495; LptG/LptF_permease. DR Pfam; PF03739; YjgP_YjgQ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 13 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 267 287 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 307 337 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 345 AA; 39718 MW; C0A92D70F8E773DD CRC64; MIKHYLFMAV SQVFFSFFLV LFFISSIVLL ISIASVTLVI KVSFLDLVQL FLYSLPGTIF FILPITFFAA CALGLSRLSY DHELLVFFSL GVSPKKMTKV FAPLSLLVSA ILLVFSLILI PTSKSTYYGF LRQKKDKIDI NIRAGEFGQK LGDWLVYVDK TKNNSYDNLV LFSNKSLSQE SFILAQKGNI NNQNGVFELN LYNGHAYFTQ GDKMRKVDFE ELHLRNKLKS FNSNDAAYLQ GTDYLGYWKK AFGKNANKNQ KRRFSQAILV SLFPLASVFL IPLFGIANPR FKTNWSYFYV LGAVGVYFLM VHVISTDLFL MTFFFPFIWA FASYLLFRKF ILKRY // ID O25439_HELPY Unreviewed; 493 AA. AC O25439; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 100. DE SubName: Full=UDP-MurNac-pentapeptide presynthetase (MurF) {ECO:0000313|EMBL:AAD07786.1}; GN OrderedLocusNames=HP_0740 {ECO:0000313|EMBL:AAD07786.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07786.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07786.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07786.1; -; Genomic_DNA. DR PIR; D64612; D64612. DR RefSeq; NP_207534.1; NC_000915.1. DR RefSeq; WP_001191311.1; NC_018939.1. DR ProteinModelPortal; O25439; -. DR DIP; DIP-3742N; -. DR IntAct; O25439; 2. DR MINT; MINT-177437; -. DR STRING; 85962.HP0740; -. DR PaxDb; O25439; -. DR EnsemblBacteria; AAD07786; AAD07786; HP_0740. DR GeneID; 899328; -. DR KEGG; heo:C694_03800; -. DR KEGG; hpy:HP0740; -. DR PATRIC; 20592767; VBIHelPyl33062_0772. DR eggNOG; ENOG4107EES; Bacteria. DR eggNOG; COG0770; LUCA. DR KO; K01929; -. DR OMA; FANDAPN; -. DR OrthoDB; EOG6PKFCR; -. DR BioCyc; HPY:HP0740-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0047480; F:UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR GO; GO:0071555; P:cell wall organization; IEA:InterPro. DR Gene3D; 3.40.1190.10; -; 1. DR Gene3D; 3.90.190.20; -; 1. DR InterPro; IPR004101; Mur_ligase_C. DR InterPro; IPR013221; Mur_ligase_cen. DR InterPro; IPR005863; UDP-N-AcMur_synth. DR PANTHER; PTHR23135:SF3; PTHR23135:SF3; 1. DR Pfam; PF08245; Mur_ligase_M; 1. DR SUPFAM; SSF53244; SSF53244; 1. DR SUPFAM; SSF53623; SSF53623; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 102 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 145 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 173 350 Mur_ligase_M. {ECO:0000259|Pfam:PF08245}. SQ SEQUENCE 493 AA; 55822 MW; F2889F786932F423 CRC64; MQSLSWLNLA FRWLFITGLG YYIMTLLQWY HYSVFRILTK HHKMRWHGIY FLLPLGVFIL SYAFTMPFVF DFFCGVIQMP MLIVWAKRND KPLVFTPRVK RFFIFLLLFL ILHEILNIEL VPLDGISLAL GYLCLFIFVL SASLISEKAL SKQYLQTAKD KITSLKNLKV IAITGSFGKT STKNFLLQIL QTTFNAHASP KSVNTLLGLA NDINQNLDDR SEIYIAEAGA RNKGDIKEIT CLIEPHLVVV AEVGEQHLEY FKTLENICET KAELLDSKRL EKAFCYSVEK IKPYAPKDSP LIDYSSLVKN IQSTLKGTSF EMLIGSVWER FETKVLGEFS AYNIASAILI AKHLGLETER IKRLVLELNP IAHRLQLLEV NQKIIIDDSF NGNLKGMLEG IRLASLHKGR KVIVTPGLVE SNTESNEALA QKIDGVFDVA IITGELNSKT IASQLKTPQK ILLKDKAQLE NILQATTIQG DLILFANDAP NYI // ID O25118_HELPY Unreviewed; 567 AA. AC O25118; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 84. DE RecName: Full=Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; GN OrderedLocusNames=HP_0351 {ECO:0000313|EMBL:AAD07419.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07419.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07419.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: The M ring may be actively involved in energy CC transduction. {ECO:0000256|PIRNR:PIRNR004862}. CC -!- SUBCELLULAR LOCATION: Bacterial flagellum basal body CC {ECO:0000256|PIRNR:PIRNR004862}. CC -!- SIMILARITY: Belongs to the FliF family. CC {ECO:0000256|PIRNR:PIRNR004862}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07419.1; -; Genomic_DNA. DR PIR; G64563; G64563. DR RefSeq; NP_207149.1; NC_000915.1. DR RefSeq; WP_000364750.1; NC_000915.1. DR ProteinModelPortal; O25118; -. DR DIP; DIP-3719N; -. DR IntAct; O25118; 7. DR MINT; MINT-168989; -. DR STRING; 85962.HP0351; -. DR PaxDb; O25118; -. DR PRIDE; O25118; -. DR EnsemblBacteria; AAD07419; AAD07419; HP_0351. DR GeneID; 900354; -. DR KEGG; hpy:HP0351; -. DR PATRIC; 20591935; VBIHelPyl33062_0364. DR eggNOG; ENOG4105C1F; Bacteria. DR eggNOG; COG1766; LUCA. DR KO; K02409; -. DR OMA; NFQRGLE; -. DR OrthoDB; EOG6KMB3J; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009431; C:bacterial-type flagellum basal body, MS ring; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0031514; C:motile cilium; IEA:UniProtKB-KW. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR013556; Flag_M-ring_C. DR InterPro; IPR000067; FlgMring_FliF. DR InterPro; IPR006182; YscJ_FliF. DR Pfam; PF01514; YscJ_FliF; 1. DR Pfam; PF08345; YscJ_FliF_C; 1. DR PIRSF; PIRSF004862; FliF; 1. DR PRINTS; PR01009; FLGMRINGFLIF. DR TIGRFAMs; TIGR00206; fliF; 1. PE 3: Inferred from homology; KW Bacterial flagellum {ECO:0000256|PIRNR:PIRNR004862}; KW Cell projection {ECO:0000313|EMBL:AAD07419.1}; KW Cilium {ECO:0000313|EMBL:AAD07419.1}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Flagellum {ECO:0000313|EMBL:AAD07419.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 23 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 446 467 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 30 222 YscJ_FliF. {ECO:0000259|Pfam:PF01514}. FT DOMAIN 257 423 YscJ_FliF_C. {ECO:0000259|Pfam:PF08345}. FT COILED 489 516 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 567 AA; 63478 MW; 3A3CC347FA97620F CRC64; MDLKVLLQRI VDFFIKLNKK QKIALIAAGV LITALLVFLL LYPFKEKDYT QGGYGVLFEG LDSSDNALIL QHLQQNQIPY KVSKDDTILI PKDKVYEERI TLASQGIPKT SKVGFEIFDT KDFGATDFDQ NIKLIRAIEG ELSRTIESLN PILKANVHIA IPKDSVFVAK EVPPSASVML KLKPDMKLSP TQILGIKNLI AAAVPKLTIE NVKIVNENGE SIGEGDILEN SKELALEQLH YKQNFENILE NKIVNILAPI VGGKNKVVAR VNAEFDFSQK KSTKETFDPN NVVRSEQNLE EKKEGASKKQ VGGVPGVVSN IGPVQGLKDN KEPEKYEKSQ NTTNYEVGKT ISEIKGEFGT LVRLNAAVVV DGKYKIALKD GVNTLEYEPL SDESLQKINA LVKQAIGYNQ NRGDDVAVSN FEFNPMAPVI DNATLSEKIM HKTQKILGSF TPLIKYILVF IVLFIFYKKV IVPFSERMLE VVPDEDKEVK SMFEEMDEEE DELNKLGDLR KKVEDQLGLN ASFSEEEVRY EIILEKIRGT LKERPDEIAM LFKLLIKDEI SSDGAKG // ID O25279_HELPY Unreviewed; 227 AA. AC O25279; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 93. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07619.1}; GN OrderedLocusNames=HP_0553 {ECO:0000313|EMBL:AAD07619.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07619.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07619.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the class IV-like SAM-binding CC methyltransferase superfamily. RNA methyltransferase TrmH family. CC {ECO:0000256|SAAS:SAAS00555714}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07619.1; -; Genomic_DNA. DR PIR; A64589; A64589. DR RefSeq; NP_207348.1; NC_000915.1. DR RefSeq; WP_001149319.1; NC_018939.1. DR ProteinModelPortal; O25279; -. DR DIP; DIP-3450N; -. DR MINT; MINT-170026; -. DR STRING; 85962.HP0553; -. DR PaxDb; O25279; -. DR EnsemblBacteria; AAD07619; AAD07619; HP_0553. DR GeneID; 900041; -. DR KEGG; heo:C694_02860; -. DR KEGG; hpy:HP0553; -. DR PATRIC; 20592381; VBIHelPyl33062_0579. DR eggNOG; ENOG4105C2N; Bacteria. DR eggNOG; COG0566; LUCA. DR KO; K03218; -. DR OMA; MHILNSH; -. DR OrthoDB; EOG6GBMDM; -. DR BioCyc; HPY:HP0553-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR Gene3D; 3.30.1330.30; -; 1. DR Gene3D; 3.40.1280.10; -; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR029064; L30e-like. DR InterPro; IPR004441; rRNA_MeTrfase_TrmH. DR InterPro; IPR001537; SpoU_MeTrfase. DR InterPro; IPR013123; SpoU_subst-bd. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR Pfam; PF00588; SpoU_methylase; 1. DR Pfam; PF08032; SpoU_sub_bind; 1. DR SMART; SM00967; SpoU_sub_bind; 1. DR SUPFAM; SSF55315; SSF55315; 1. DR SUPFAM; SSF75217; SSF75217; 1. DR TIGRFAMs; TIGR00186; rRNA_methyl_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000256|SAAS:SAAS00477853}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|SAAS:SAAS00477853}. FT DOMAIN 4 76 SpoU_sub_bind. FT {ECO:0000259|SMART:SM00967}. SQ SEQUENCE 227 AA; 24790 MW; E694B78B9CF90932 CRC64; MQAVIYGKQV IMHLLNSHQE KLQEIYLSKE IDKKLFFALK KACPNIIKVD NKKAQSLAKG GNHQGVLAKV ELPLAVSLKE VKKAQKLLVL CGITDVGNIG GIFRSAYCLG MGGVILDFAK ELAYEGIVRS SLGLMYDLPF SVMPNTLDLI NELKTSGFLC LGASMQGSSQ IENLSLKKCA LFLGSEHEGL SKKILAKMDT ILSVKMRRDF DSLNVSVAAG ILMDKIN // ID O25924_HELPY Unreviewed; 248 AA. AC O25924; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Rod shape-determining protein (MreC) {ECO:0000313|EMBL:AAD08415.1}; GN OrderedLocusNames=HP_1372 {ECO:0000313|EMBL:AAD08415.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08415.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08415.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08415.1; -; Genomic_DNA. DR PIR; D64691; D64691. DR RefSeq; NP_208163.1; NC_000915.1. DR RefSeq; WP_001213296.1; NC_018939.1. DR ProteinModelPortal; O25924; -. DR STRING; 85962.HP1372; -. DR PaxDb; O25924; -. DR EnsemblBacteria; AAD08415; AAD08415; HP_1372. DR GeneID; 900313; -. DR KEGG; heo:C694_07080; -. DR KEGG; hpy:HP1372; -. DR PATRIC; 20594133; VBIHelPyl33062_1437. DR eggNOG; ENOG4105G3B; Bacteria. DR eggNOG; COG1792; LUCA. DR KO; K03570; -. DR OMA; HKRCAYS; -. DR OrthoDB; EOG6N9478; -. DR BioCyc; HPY:HP1372-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008360; P:regulation of cell shape; IEA:InterPro. DR InterPro; IPR007221; MreC. DR Pfam; PF04085; MreC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 248 AA; 28047 MW; 3D487F541A2B9B96 CRC64; MRFYFKFLWL LGIFLIFYFL DFKGSSSYIS DRIKNALMNA KNSLLDNVQA YFFQAQNIKE FQKERLILEA LKLENADLKE RLNSIYPLEN PKMTYTPTFM TSFISLEDTH SVSLNPIVNL EENKIYGLVS HNQAIGIAVL EKGRLNGFLN AHKRCAYSVM IGQNQVLGFI GTNFKQELVV DFIVPSAEIN IGDQVLTSGL DGIFGAGVFV GEVSSIEDHY TYKSAVLKNA FLSGAKLLRH VFLSDVKN // ID O25669_HELPY Unreviewed; 123 AA. AC O25669; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 115. DE SubName: Full=Putative heat shock protein (HspR) {ECO:0000313|EMBL:AAD08067.1}; GN OrderedLocusNames=HP_1025 {ECO:0000313|EMBL:AAD08067.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08067.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08067.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC Self; NbExp=3; IntAct=EBI-6415953, EBI-6415953; CC O25668:HP_1024; NbExp=2; IntAct=EBI-6415953, EBI-6415948; CC -!- SIMILARITY: Contains 1 HTH merR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000703}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08067.1; -; Genomic_DNA. DR PIR; A64648; A64648. DR RefSeq; NP_207815.1; NC_000915.1. DR RefSeq; WP_000332994.1; NC_018939.1. DR ProteinModelPortal; O25669; -. DR DIP; DIP-3600N; -. DR IntAct; O25669; 11. DR MINT; MINT-167336; -. DR STRING; 85962.HP1025; -. DR PaxDb; O25669; -. DR EnsemblBacteria; AAD08067; AAD08067; HP_1025. DR GeneID; 899560; -. DR KEGG; heo:C694_05305; -. DR KEGG; hpy:HP1025; -. DR PATRIC; 20593387; VBIHelPyl33062_1074. DR eggNOG; ENOG4105KNI; Bacteria. DR eggNOG; COG0789; LUCA. DR KO; K13640; -. DR OMA; RIKMILR; -. DR OrthoDB; EOG6W45X4; -. DR BioCyc; HPY:HP1025-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR009061; DNA-bd_dom_put. DR InterPro; IPR000551; MerR-type_HTH_dom. DR Pfam; PF13411; MerR_1; 1. DR SMART; SM00422; HTH_MERR; 1. DR SUPFAM; SSF46955; SSF46955; 1. DR PROSITE; PS00552; HTH_MERR_1; 1. DR PROSITE; PS50937; HTH_MERR_2; 1. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|RuleBase:RU000703}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Stress response {ECO:0000313|EMBL:AAD08067.1}. FT DOMAIN 8 77 HTH merR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50937}. FT COILED 74 101 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 123 AA; 14344 MW; 52F68AAA62A71157 CRC64; MCDYDEPLYL ISVVAKILGV HPQTLRQYEK EGLIEPSRTD GKMRLYSQRD MDKIKTILRL TRDMGVNLAG VDIILRLKEK LDELDNLNKE LQDALHKHSK NTKTPTKNLN TPTNFYELIL FKK // ID O25981_HELPY Unreviewed; 259 AA. AC O25981; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08487.1}; GN OrderedLocusNames=HP_1440 {ECO:0000313|EMBL:AAD08487.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08487.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08487.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08487.1; -; Genomic_DNA. DR PIR; H64699; H64699. DR RefSeq; NP_208231.1; NC_000915.1. DR RefSeq; WP_000896371.1; NC_018939.1. DR ProteinModelPortal; O25981; -. DR IntAct; O25981; 1. DR STRING; 85962.HP1440; -. DR PaxDb; O25981; -. DR EnsemblBacteria; AAD08487; AAD08487; HP_1440. DR GeneID; 899854; -. DR KEGG; heo:C694_07460; -. DR KEGG; hpy:HP1440; -. DR PATRIC; 20594287; VBIHelPyl33062_1512. DR OMA; KELICIA; -. DR OrthoDB; EOG6QP0ZH; -. DR BioCyc; HPY:HP1440-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}. FT CHAIN 24 259 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158063. SQ SEQUENCE 259 AA; 29362 MW; 6105CD5E9D440CB5 CRC64; MAFWHKRLAV GCCIVLFSCM MNANSIQIVR DDPPLDPTLP AWVYSVALLK VYFSDGTYKE GYATLLKNGR YIASSETLYS NGLYPKTILA KMQDSSAKEL ICIASLRLEA MDRNQGLSLL KTADFRDDYC HKREESYYHA RIYTKYAQTF HSNPYTNQKT PNSDLYYPAL NEGNSFSIQI MGISVAELLK SKKFLSLDVS FKKGSVLWGG RPYFSEVGEF MGMASSTLEN QESLVIIPKE KIVQFLNALK NQNIFPNIP // ID O25198_HELPY Unreviewed; 44 AA. AC O25198; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07522.1}; GN OrderedLocusNames=HP_0450 {ECO:0000313|EMBL:AAD07522.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07522.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07522.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07522.1; -; Genomic_DNA. DR PIR; B64576; B64576. DR RefSeq; NP_207248.1; NC_000915.1. DR RefSeq; WP_001862499.1; NC_018939.1. DR ProteinModelPortal; O25198; -. DR STRING; 85962.HP0450; -. DR PaxDb; O25198; -. DR PRIDE; O25198; -. DR EnsemblBacteria; AAD07522; AAD07522; HP_0450. DR GeneID; 898878; -. DR KEGG; hpy:HP0450; -. DR PATRIC; 20592159; VBIHelPyl33062_0468. DR OrthoDB; EOG6D8BMW; -. DR BioCyc; HPY:HP0450-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 4 40 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 44 AA; 5335 MW; 4D2C88A9D9792E82 CRC64; MSGNEELELR ARETELDKRV AELDKREKQL RKDIDAFKQE KKFI // ID O25187_HELPY Unreviewed; 366 AA. AC O25187; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07508.1}; GN OrderedLocusNames=HP_0439 {ECO:0000313|EMBL:AAD07508.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07508.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07508.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07508.1; -; Genomic_DNA. DR PIR; G64574; G64574. DR RefSeq; NP_207237.1; NC_000915.1. DR RefSeq; WP_000044730.1; NC_018939.1. DR ProteinModelPortal; O25187; -. DR DIP; DIP-3078N; -. DR IntAct; O25187; 4. DR MINT; MINT-177639; -. DR STRING; 85962.HP0439; -. DR PaxDb; O25187; -. DR EnsemblBacteria; AAD07508; AAD07508; HP_0439. DR GeneID; 899980; -. DR KEGG; heo:C694_02230; -. DR KEGG; hpy:HP0439; -. DR PATRIC; 20592137; VBIHelPyl33062_0457. DR eggNOG; COG3736; LUCA. DR KO; K03203; -. DR OMA; NFFSRIG; -. DR OrthoDB; EOG6WDSFJ; -. DR BioCyc; HPY:HP0439-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032710; NTF2-like_dom. DR InterPro; IPR007430; VirB8. DR Pfam; PF04335; VirB8; 1. DR SUPFAM; SSF54427; SSF54427; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 188 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 165 348 VirB8. {ECO:0000259|Pfam:PF04335}. FT COILED 35 69 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 366 AA; 42551 MW; 96239E8695E81E24 CRC64; MSKRSEVLEQ FHGGLKNLEL QTKRRMGLWG DPKENEEQTL FLEEIENELK QLENKENLKA DNNTEFKEEN QDTKENQPND LFSLPLPTQT TINGIKEFVE EPVIETEKKE TSQNEPIQEK KERIFKNFFS RIGFDKSIAP TMLFEEVRDA SVIYHLEKKL GDYIFYVACF FFGTTALLII LLTILLPLKQ KEPYLVQFSN NKENFALVQK ADSSITANKA LIRSLVGAYV LNRESITHIE QHEKMRQNTI KEQSSNEVWY EFEKLIAHYD SIYTNPLLTR KVKIANIYLD KDLAYIDIEV SLYHSGELES LKRYKVVMSF EFKKQEINFD SMSLNPTGFM VTSYDVTEIA IVNYPTAKAI GLFLAS // ID O25695_HELPY Unreviewed; 314 AA. AC O25695; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08107.1}; GN OrderedLocusNames=HP_1055 {ECO:0000313|EMBL:AAD08107.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08107.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08107.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08107.1; -; Genomic_DNA. DR PIR; G64651; G64651. DR RefSeq; NP_207846.1; NC_000915.1. DR RefSeq; WP_000911251.1; NC_018939.1. DR ProteinModelPortal; O25695; -. DR STRING; 85962.HP1055; -. DR PaxDb; O25695; -. DR PRIDE; O25695; -. DR EnsemblBacteria; AAD08107; AAD08107; HP_1055. DR GeneID; 899590; -. DR KEGG; hpy:HP1055; -. DR PATRIC; 20593447; VBIHelPyl33062_1104. DR OMA; SANNQFK; -. DR OrthoDB; EOG6DC6GV; -. DR BioCyc; HPY:HP1055-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 15 45 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 314 AA; 35674 MW; 180B46C937FA6EFC CRC64; MLKFKYGLIY IALILGLQAT DYDNLEEENQ QLDEKINHLK QQLTEKGVSP KEMDKDKFEE EYINRSYPKI SSKKKEKLLK SFSIADDKSG VFLGGGYAYG ELNLSYQGEM LDRYGANAPS AFKNNININA PVSMISAKFG YQKYFVSYFG TRFYGDLLLG GGALKEDAIK QPVGSFIYVL GAVNTDLLFD MPLDFKTKKH FLGVYAGFGI GLMLYQDRPN QNGRNLVVGG YSSPNFLWKS LIEVDYTFNV GVSLTLYRKH RLEIGTKLPI SYLRMGVEEG AIYQNKEDDE RLLVSANNQF KRSSFLLVNY AFIF // ID O25522_HELPY Unreviewed; 227 AA. AC O25522; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 87. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07899.1}; GN OrderedLocusNames=HP_0851 {ECO:0000313|EMBL:AAD07899.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07899.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07899.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07899.1; -; Genomic_DNA. DR PIR; C64626; C64626. DR RefSeq; NP_207644.1; NC_000915.1. DR RefSeq; WP_000230797.1; NC_018939.1. DR ProteinModelPortal; O25522; -. DR STRING; 85962.HP0851; -. DR PaxDb; O25522; -. DR EnsemblBacteria; AAD07899; AAD07899; HP_0851. DR GeneID; 899380; -. DR KEGG; heo:C694_04360; -. DR KEGG; hpy:HP0851; -. DR PATRIC; 20592991; VBIHelPyl33062_0883. DR eggNOG; ENOG4107Z2H; Bacteria. DR eggNOG; COG0671; LUCA. DR KO; K19302; -. DR OMA; CCSLALY; -. DR OrthoDB; EOG6RNQKH; -. DR BioCyc; HPY:HP0851-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.20.144.10; -; 1. DR InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase. DR Pfam; PF01569; PAP2; 1. DR SMART; SM00014; acidPPc; 1. DR SUPFAM; SSF48317; SSF48317; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 65 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 115 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 135 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 193 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 199 221 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 100 214 acidPPc. {ECO:0000259|SMART:SM00014}. SQ SEQUENCE 227 AA; 25612 MW; 299242AE12219AAC CRC64; MVFDRTISVR EKKAAKTLGI IGIVFFILFG IVISGVAFQK EWVQQLDLFF IDLIRNPAPI QKSAWLSFVF FSTWFAQSKL TTPIALLIGL WFGFQKRIAL GVWFFFSILL GEFTLKSLKL LVARPRPVTN GELVFAHGFS FPSGHALASA LFYGSLALLL CYSNANNRIK TIIAVVLLFW IFLMAYDRVY LGVHYPSDVL GGFLLGIAWS CCSLALYLGF LKRPYNQ // ID O25166_HELPY Unreviewed; 249 AA. AC O25166; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Putative neuraminyllactose-binding hemagglutinin homolog (HpaA) {ECO:0000313|EMBL:AAD07478.1}; GN OrderedLocusNames=HP_0410 {ECO:0000313|EMBL:AAD07478.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07478.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07478.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3BGH} RP X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) OF 25-249. RA Bonanno J.B., Dickey J., Bain K.T., McKenzie C., Romero R., Smith D., RA Wasserman S., Sauder J.M., Burley S.K., Almo S.C.; RT "Crystal structure of putative neuraminyllactose-binding hemagglutinin RT homolog from Helicobacter pylori."; RL Submitted (NOV-2007) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07478.1; -; Genomic_DNA. DR PIR; B64571; B64571. DR RefSeq; NP_207208.1; NC_000915.1. DR RefSeq; WP_000715711.1; NC_018939.1. DR PDB; 3BGH; X-ray; 2.45 A; A/B=25-249. DR PDBsum; 3BGH; -. DR ProteinModelPortal; O25166; -. DR SMR; O25166; 42-242. DR DIP; DIP-3421N; -. DR IntAct; O25166; 3. DR MINT; MINT-165942; -. DR STRING; 85962.HP0410; -. DR PaxDb; O25166; -. DR EnsemblBacteria; AAD07478; AAD07478; HP_0410. DR GeneID; 899230; -. DR KEGG; heo:C694_02095; -. DR KEGG; hpy:HP0410; -. DR PATRIC; 20592063; VBIHelPyl33062_0425. DR KO; K15846; -. DR OMA; KIMNQAY; -. DR OrthoDB; EOG67DPH8; -. DR BioCyc; HPY:HP0410-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:InterPro. DR InterPro; IPR007876; NeuraminylLac-bd_hemagglutn. DR Pfam; PF05211; NLBH; 1. DR PIRSF; PIRSF019714; Neuraminyllac-bd_haemagglutn; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3BGH}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 249 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157890. FT REGION 233 234 Sulfate 3 binding. FT {ECO:0000213|PDB:3BGH}. FT BINDING 96 96 Sulfate 1. {ECO:0000213|PDB:3BGH}. FT BINDING 144 144 Sulfate 2. {ECO:0000213|PDB:3BGH}. FT BINDING 182 182 Sulfate 2. {ECO:0000213|PDB:3BGH}. FT BINDING 232 232 Sulfate 1; via amide nitrogen. FT {ECO:0000213|PDB:3BGH}. SQ SEQUENCE 249 AA; 28349 MW; 43E6ABB46EABB515 CRC64; MKKGSLAIVL GSLLASGAFY TALADGMPAK QQHNNTGESV ELHFHYPIKG KQEPKNSHLV VLIEPKIEIN KVIPESYQKE FEKSLFLQLS SFLERKGYSV SQFKDASEIP QDIKEKALLV LRMDGNVAIL EDIVEESDAL SEEKVIDMSS GYLNLNFVEP KSEDIIHSFG IDVSKIKAVI ERVELRRTNS GGFVPKTFVH RIKETDHDQA IRKIMNQAYH KVMVHITKEL SKKHMEHYEK VSSEMKKRK // ID O25859_HELPY Unreviewed; 182 AA. AC O25859; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE SubName: Full=NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10) {ECO:0000313|EMBL:AAD08313.1}; GN OrderedLocusNames=HP_1269 {ECO:0000313|EMBL:AAD08313.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08313.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08313.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the complex I subunit 6 family. CC {ECO:0000256|RuleBase:RU004429}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08313.1; -; Genomic_DNA. DR PIR; E64678; E64678. DR RefSeq; NP_208061.1; NC_000915.1. DR RefSeq; WP_000464208.1; NC_018939.1. DR ProteinModelPortal; O25859; -. DR STRING; 85962.HP1269; -. DR PaxDb; O25859; -. DR EnsemblBacteria; AAD08313; AAD08313; HP_1269. DR GeneID; 900333; -. DR KEGG; heo:C694_06560; -. DR KEGG; hpy:HP1269; -. DR PATRIC; 20593915; VBIHelPyl33062_1328. DR eggNOG; ENOG4107XCS; Bacteria. DR eggNOG; COG0839; LUCA. DR KO; K00339; -. DR OMA; DYVFYFQ; -. DR OrthoDB; EOG6VMTRD; -. DR BioCyc; HPY:HP1269-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR InterPro; IPR001457; NADH_UbQ/plastoQ_OxRdtase_su6. DR Pfam; PF00499; Oxidored_q3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000256|RuleBase:RU004429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:AAD08313.1}. FT TRANSMEM 6 22 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 27 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 91 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 166 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 182 AA; 19766 MW; 3C7C455D93259FB4 CRC64; MFETIAFYFF AILTLSMALV VITTTNILYA ITALASSMVF ISAFFFLLDA EFLGVVQITV YVGAVIVMYA FGMMFFNSAA EVVERKQSPK ILCILSFGVA LLLTLILSAP SIGENLSNQV NSNAIDAQIP NIKAIGYVLF TNYLIPFEAA ALMLLVAMVG GIATGIQKIH GKNHTQFIKE SL // ID O25329_HELPY Unreviewed; 160 AA. AC O25329; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07674.1}; GN OrderedLocusNames=HP_0608 {ECO:0000313|EMBL:AAD07674.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07674.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07674.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07674.1; -; Genomic_DNA. DR PIR; H64595; H64595. DR RefSeq; NP_207403.1; NC_000915.1. DR RefSeq; WP_010875503.1; NC_000915.1. DR ProteinModelPortal; O25329; -. DR DIP; DIP-3461N; -. DR IntAct; O25329; 4. DR MINT; MINT-164748; -. DR STRING; 85962.HP0608; -. DR PaxDb; O25329; -. DR PRIDE; O25329; -. DR EnsemblBacteria; AAD07674; AAD07674; HP_0608. DR GeneID; 898964; -. DR KEGG; hpy:HP0608; -. DR PATRIC; 20592495; VBIHelPyl33062_0636. DR OMA; EFSYLMA; -. DR OrthoDB; EOG6DC6GV; -. DR BioCyc; HPY:HP0608-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:InterPro. DR Gene3D; 2.40.160.20; -; 1. DR InterPro; IPR011250; OMP/PagP_b-brl. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 160 AA; 17945 MW; AAE36E328CFBAFFC CRC64; MVGLAPIKIT PKPASDSSYT AFLWGAKGGY QFAFFKALAL RGEFSYLMAI KPTALHTINT SLLSLNIDVL SDFYTYKKYS FGVYGGLGIG YFYQSNHLGM KNSSFMGYNG LFNVGLGSTI DRHHRIELGA KIPFSKTRNS FKNPYFLESV FIHATYSYMF // ID O25483_HELPY Unreviewed; 279 AA. AC O25483; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07858.1}; GN OrderedLocusNames=HP_0803 {ECO:0000313|EMBL:AAD07858.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07858.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07858.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07858.1; -; Genomic_DNA. DR PIR; C64620; C64620. DR RefSeq; NP_207596.1; NC_000915.1. DR RefSeq; WP_001863428.1; NC_018939.1. DR ProteinModelPortal; O25483; -. DR STRING; 85962.HP0803; -. DR PaxDb; O25483; -. DR EnsemblBacteria; AAD07858; AAD07858; HP_0803. DR GeneID; 898912; -. DR KEGG; heo:C694_04115; -. DR KEGG; hpy:HP0803; -. DR PATRIC; 20592893; VBIHelPyl33062_0835. DR eggNOG; ENOG4105EI9; Bacteria. DR eggNOG; ENOG410XR5V; LUCA. DR OMA; FWEYGLE; -. DR OrthoDB; EOG657J8D; -. DR BioCyc; HPY:HP0803-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR025079; DUF3943. DR Pfam; PF13084; DUF3943; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 110 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 165 182 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 194 215 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 227 247 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 134 243 DUF3943. {ECO:0000259|Pfam:PF13084}. SQ SEQUENCE 279 AA; 32196 MW; B2A8187B3B65849F CRC64; MRVIIEFMLI SLKTFLKILL KIFLKTFQKI WVVCVIIWGL GCSFLNANSI QLEETLRRSP KNLIWQHFKK KFKKSNTIPY APNSRWKYLG TSIGILGVSL VIGIVGLYLM PESVTNWDKE KFGIKSWFEN VRMGPKLDND SFIFNEILHP YFGAMYYMQP RMAGFSWMAS AFFSFITSTL FWEYGLEAFV EVPSWQDLVI TPLLGSILGE GFYQLTRYIQ RNEGKLFGSL FLGRLVIALM DPIGFIIRDL GLGEALGIYN KHEIRSSLSP NGLNLTYKF // ID O24971_HELPY Unreviewed; 254 AA. AC O24971; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 108. DE SubName: Full=Signal-transducing protein, histidine kinase {ECO:0000313|EMBL:AAD07233.1}; GN OrderedLocusNames=HP_0164 {ECO:0000313|EMBL:AAD07233.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07233.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07233.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07233.1; -; Genomic_DNA. DR PIR; D64540; D64540. DR ProteinModelPortal; O24971; -. DR IntAct; O24971; 5. DR STRING; 85962.HP0164; -. DR PaxDb; O24971; -. DR EnsemblBacteria; AAD07233; AAD07233; HP_0164. DR KEGG; heo:C694_00815; -. DR PATRIC; 20591549; VBIHelPyl33062_0174. DR eggNOG; COG0642; LUCA. DR KO; K02484; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP0164-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR Pfam; PF02518; HATPase_c; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Kinase {ECO:0000313|EMBL:AAD07233.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07233.1}. FT DOMAIN 38 225 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 254 AA; 29225 MW; E7929C7F91F60638 CRC64; MSCKSKQKDE IGDLANEFDN CILKINAMNE SRVLFLRSIM HELRTPITKG KILSSMLKEE LSCKRFSSIF DHLNMLIEQF ARIEQLASKN YGSNKEKFLM SDLIDKIEKM LLIDEDKESP IHVSSSNYII EADFELFSIA LKNMVDNAIK YSDDKQVFLD FIGNNLVVSN KSKPLKEDFE KYLQPYFKSS NPSQAHGFGL GMYIIKNALE AMGLNLSYHY SNGRICFTIH DCVFNSFYDL EEDNEELPPP PPKI // ID O25231_HELPY Unreviewed; 480 AA. AC O25231; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07555.1}; GN OrderedLocusNames=HP_0487 {ECO:0000313|EMBL:AAD07555.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07555.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07555.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07555.1; -; Genomic_DNA. DR PIR; G64580; G64580. DR RefSeq; NP_207284.1; NC_000915.1. DR RefSeq; WP_001115603.1; NC_000915.1. DR ProteinModelPortal; O25231; -. DR STRING; 85962.HP0487; -. DR PaxDb; O25231; -. DR PRIDE; O25231; -. DR EnsemblBacteria; AAD07555; AAD07555; HP_0487. DR GeneID; 898832; -. DR KEGG; hpy:HP0487; -. DR PATRIC; 20592249; VBIHelPyl33062_0513. DR OMA; KYNIRMD; -. DR OrthoDB; EOG6DNT51; -. DR BioCyc; HPY:HP0487-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 480 AA; 55177 MW; 35DBDB0C72E74CF7 CRC64; MPFCIFILIS LGVRVLEIKK YFSYSLFFLL FSSLFLSKLQ AYKFNMSIVG KVSSYTKFGF NNQRYQPSKD IYPTGSYTSL LGELNLSMGL YKGLRAEVGA MMAALPYDST AYQGNNIPNG QPGSRTDPFG AGIFWQYIGW YAGHSGLQVQ KPRLAMVHNA FLSYNYKKDK FSFGVKGGRY DAEEYDWFTS YTQGVEGFVK YKDTRFRVMY SDARASASSD WFWYFGRYYT SGKALMVADL KYEKDNLKIN PYFYAIFQRM YAPGINITYD TNPNFNNKGF RFVGTFVGFF PIFATPANQN DIILFQQVPL GKSGQTYFFR TRFYYNKWQF GGSVYKNIGN ANGDIGIYGD PLGYNIWTNS IYDAEINNIV GADVINGFLY VGSQYRGFSW KILGRWTDSP RADERSLALF LSYFSNKYNI RMDLKLEYYG NITKKGYCIG YCGMYVPVDP NGPGTQPLTH NVYSDRSHIM FNIAYGFRIY // ID O26086_HELPY Unreviewed; 147 AA. AC O26086; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08610.1}; GN OrderedLocusNames=HP_1566 {ECO:0000313|EMBL:AAD08610.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08610.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08610.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08610.1; -; Genomic_DNA. DR PIR; F64715; F64715. DR RefSeq; NP_208357.1; NC_000915.1. DR RefSeq; WP_000949882.1; NC_018939.1. DR ProteinModelPortal; O26086; -. DR STRING; 85962.HP1566; -. DR PaxDb; O26086; -. DR EnsemblBacteria; AAD08610; AAD08610; HP_1566. DR GeneID; 899725; -. DR KEGG; heo:C694_08115; -. DR KEGG; hpy:HP1566; -. DR PATRIC; 20594559; VBIHelPyl33062_1647. DR OMA; YHQIAYK; -. DR OrthoDB; EOG6VB6W8; -. DR BioCyc; HPY:HP1566-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 22 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 92 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 142 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 147 AA; 17311 MW; 00401B1641A52907 CRC64; MLSLKQDSFF FLCLGILGFY FYSLLRDLMP FLPPMIGFLF LFYAKKYDHF LPSLSVFGCL FWFESMHLKT LGVLALLFLI YHQIAYKNSL KLFNDGFLFK TLHVFLVYYL YLSRFFSMSL SLKILGFLAL FALIESALWG LYEKSSL // ID O25808_HELPY Unreviewed; 222 AA. AC O25808; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 11-MAY-2016, entry version 95. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08256.1}; GN OrderedLocusNames=HP_1207 {ECO:0000313|EMBL:AAD08256.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08256.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08256.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08256.1; -; Genomic_DNA. DR PIR; G64670; G64670. DR RefSeq; NP_207999.1; NC_000915.1. DR RefSeq; WP_001162995.1; NC_018939.1. DR ProteinModelPortal; O25808; -. DR DIP; DIP-3380N; -. DR IntAct; O25808; 10. DR MINT; MINT-161707; -. DR STRING; 85962.HP1207; -. DR PaxDb; O25808; -. DR DNASU; 898955; -. DR EnsemblBacteria; AAD08256; AAD08256; HP_1207. DR GeneID; 898955; -. DR KEGG; heo:C694_06250; -. DR KEGG; hpy:HP1207; -. DR PATRIC; 20593785; VBIHelPyl33062_1265. DR eggNOG; ENOG4105QJI; Bacteria. DR eggNOG; COG0546; LUCA. DR OMA; YIFHIAS; -. DR OrthoDB; EOG62RSH5; -. DR BioCyc; HPY:HP1207-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR023214; HAD-like_dom. DR Pfam; PF13419; HAD_2; 1. DR SUPFAM; SSF56784; SSF56784; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 222 AA; 25560 MW; 50B34DAA83444E94 CRC64; MALEVVLWDF DGVIFDSMHL KNEGFRALFQ KHGNKNQESL KQFEVYHYQS GGISRNEKIQ YFYNEILKTP IAQEEVDALA LEFGTIIEQK LFDREHLNSE VMAFIDKHYK NHVFHIASAA LHSELQVLCE FLGIIKYFKS VEGSPPNKPK IIANIIQKYA YNPGRMLMIG DSVNDYESAQ ANEVAFLGYN SKVLKNLVGQ NGYQGKYLES FKGFDLQNFI KE // ID O25953_HELPY Unreviewed; 817 AA. AC O25953; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE SubName: Full=Type I restriction enzyme M protein (HsdM) {ECO:0000313|EMBL:AAD08446.1}; GN OrderedLocusNames=HP_1403 {ECO:0000313|EMBL:AAD08446.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08446.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08446.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08446.1; -; Genomic_DNA. DR PIR; C64695; C64695. DR RefSeq; NP_208194.1; NC_000915.1. DR RefSeq; WP_000985413.1; NC_018939.1. DR ProteinModelPortal; O25953; -. DR DIP; DIP-3702N; -. DR IntAct; O25953; 2. DR MINT; MINT-4074720; -. DR STRING; 85962.HP1403; -. DR REBASE; 56822; M.Hpy26695ORF7250P. DR PaxDb; O25953; -. DR EnsemblBacteria; AAD08446; AAD08446; HP_1403. DR GeneID; 899893; -. DR KEGG; heo:C694_07250; -. DR KEGG; hpy:HP1403; -. DR PATRIC; 20594195; VBIHelPyl33062_1468. DR eggNOG; ENOG4105CVR; Bacteria. DR eggNOG; COG0286; LUCA. DR KO; K03427; -. DR OMA; IESVCSK; -. DR OrthoDB; EOG64JFNB; -. DR BioCyc; HPY:HP1403-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0009007; F:site-specific DNA-methyltransferase (adenine-specific) activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR022749; D12N6_MeTrfase_N. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR004546; Restrct_endonuc_typeI_HsdM. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF12161; HsdM_N; 1. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00497; hsdM; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 8 122 HsdM_N. {ECO:0000259|Pfam:PF12161}. FT DOMAIN 134 454 N6_Mtase. {ECO:0000259|Pfam:PF02384}. FT COILED 645 675 {ECO:0000256|SAM:Coils}. FT COILED 706 736 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 817 AA; 92604 MW; BFF3697854EEF891 CRC64; MAIKKSELYS SLWAGADSLR GGMDASEYKN YVLNLLFLKY ISDKARNNNF SEIEVPQGCF YEDILALEGD KEIGDKLNKI IAKIADQNEL KGVIDSVDFN DNTKLGEGKA MMDTLSNLVK IFADLSLGAH GALDDDLLGD AYEYLMRHFA SESGKSKGQF YTPSEVSLLS SLLLGIDANT RQDKSIYDPA CGSGSLLLKA SSLAGEKGLT IYGQEKDIST TALCRMNMIL HNSATADIAK GGSSTLSNPL FTTENGMLKT FDYVVANPPF SLKNWTDGLS IDPKSKQVIN DSFNRFEDGT PPEKNGDFAF LLHIIKSLKN TGKGAVILPH GVLFRGNAEG AIRKNLLTKG YIKGVIGLAP NLFYGTSIPA CVIVLDKENA RARKGVFMID ASKDFKKDGN KNRLREQDVQ KMIDTFNAYK EIPYYSKMVS LEEISANDYN LNIPRYIAAK PESEKDLFAL INSHKASYLP KNEIKAYAPY FQVFKELKNT LFKKSDKESY YALKTECENI KELIIQSSEF QTFHASVLNA FDRLDLFETF DHLEPGFNPK TLIESVCSKV LKEFEKIEIL DKYGVYQLFK DYYNEVLQDD WFLLSFNDFL SAKELRELTP LKDKNKKANY LEEPDFVIQK THYKSDLIPK NLIKQRFFEK EAKELEELEN ALNEKEANFE EFIEEHSNEE GLFYELKINE SVLKKELKNA TDSEDKKILK TALELLEAKN KVLKMKNKAY EELELKAFHQ YKNLELGEIK DLIIQDKWLK SLKNALENKI LKRINAFISA LNGIIQTYSN SLLELDKEVK ESESKVLEHL KDLGLMG // ID O25568_HELPY Unreviewed; 379 AA. AC O25568; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Adenine specific DNA methyltransferase (HINDIIM) {ECO:0000313|EMBL:AAD07955.1}; GN OrderedLocusNames=HP_0910 {ECO:0000313|EMBL:AAD07955.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07955.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07955.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07955.1; -; Genomic_DNA. DR PIR; F64633; F64633. DR RefSeq; NP_207702.1; NC_000915.1. DR RefSeq; WP_010875561.1; NC_000915.1. DR ProteinModelPortal; O25568; -. DR STRING; 85962.HP0910; -. DR REBASE; 3595; M.HpyAIXP. DR PaxDb; O25568; -. DR PRIDE; O25568; -. DR DNASU; 899439; -. DR EnsemblBacteria; AAD07955; AAD07955; HP_0910. DR GeneID; 899439; -. DR KEGG; hpy:HP0910; -. DR PATRIC; 20593121; VBIHelPyl33062_0946. DR eggNOG; ENOG4105XEZ; Bacteria. DR eggNOG; COG0827; LUCA. DR KO; K07317; -. DR OMA; RMHHISP; -. DR OrthoDB; EOG644ZKQ; -. DR BioCyc; HPY:HP0910-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR011639; RM_methylase_Eco57I. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF07669; Eco57I; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07955.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07955.1}. FT DOMAIN 76 178 Eco57I. {ECO:0000259|Pfam:PF07669}. SQ SEQUENCE 379 AA; 44081 MW; EB659D8E2EF68038 CRC64; MNNLDIKTLG QVFTPKKIVD FMLTLKHNHG SVLEPSAGDG SFLKRLKKAV RIEIDPKICP KNALCMDFFD YPLENQFDTI IGNPPYVKHK DIAPSTKEKL HYSLFDERSN LYLFFIEKAI KHLKPKGELI FITPRDFLKS TSSVKLNEWI YKEGTITHFF ELGDQKVFPN AMPNCVIFRF CKGNFSRITN DGLQFLCKKG ILYFLNQSYT QKLSEVFKVK VGAVSGCDKI FKNEKYGNLE FVTSITKRTN ALEKMVFVNE PNDYLLQHKD SLMQRKIKKF NENNWFEWGR MHHISPKKRI YVNAKTHQKN PFFIHQCPNY DGSILALFPY NQNLDLQNLC DKLNAINWQE LGFVCGGRFL FSQRSLENAL LPKDFLNLG // ID O25256_HELPY Unreviewed; 276 AA. AC O25256; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07587.1}; GN OrderedLocusNames=HP_0519 {ECO:0000313|EMBL:AAD07587.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07587.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07587.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07587.1; -; Genomic_DNA. DR PIR; G64584; G64584. DR RefSeq; NP_207316.1; NC_000915.1. DR RefSeq; WP_000471692.1; NC_018939.1. DR ProteinModelPortal; O25256; -. DR STRING; 85962.HP0519; -. DR PaxDb; O25256; -. DR EnsemblBacteria; AAD07587; AAD07587; HP_0519. DR GeneID; 898753; -. DR KEGG; heo:C694_02670; -. DR KEGG; hpy:HP0519; -. DR PATRIC; 20592315; VBIHelPyl33062_0546. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; YLAKMYL; -. DR OrthoDB; EOG6PCPVN; -. DR BioCyc; HPY:HP0519-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF08238; Sel1; 3. DR SMART; SM00671; SEL1; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 276 AA; 31528 MW; 7B987D1860EF9743 CRC64; MFKDFYRTTL SFLKPLLLLL VLLLPFSLCI ADEYISISDD WDEIVRNHKT YYFENGLDHF NQGQYQQAFK DFRLAQEYSI GLGSVYLAKM YLEGKGVKVD YKKAQFYAEN AIKGYGSGLL GGALILGRMQ AEGLGMKKDL KQALKTYRHV VRMFSNKSTN FANNFRLPNL AEFTSMLIGS RFIDLSGLSA NPIKFGKKFG ILVKKSTQIK DKTLLWEDIA EISSNITLLK QQMGEILYRI GIAYKEGLGT RKKKDRAKKF LQKSAEFGYE KAMEAL // ID O25696_HELPY Unreviewed; 284 AA. AC O25696; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08108.1}; GN OrderedLocusNames=HP_1056 {ECO:0000313|EMBL:AAD08108.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08108.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08108.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08108.1; -; Genomic_DNA. DR PIR; H64651; H64651. DR RefSeq; NP_207847.1; NC_000915.1. DR RefSeq; WP_000512585.1; NC_000915.1. DR ProteinModelPortal; O25696; -. DR DIP; DIP-3496N; -. DR IntAct; O25696; 1. DR MINT; MINT-168146; -. DR STRING; 85962.HP1056; -. DR PaxDb; O25696; -. DR PRIDE; O25696; -. DR EnsemblBacteria; AAD08108; AAD08108; HP_1056. DR GeneID; 899591; -. DR KEGG; hpy:HP1056; -. DR PATRIC; 20593449; VBIHelPyl33062_1105. DR OMA; TNIYYIS; -. DR OrthoDB; EOG6DC6GV; -. DR BioCyc; HPY:HP1056-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 25 {ECO:0000256|SAM:SignalP}. FT CHAIN 26 284 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157919. SQ SEQUENCE 284 AA; 32341 MW; 9FE566CEF5A26F55 CRC64; MGINMCSKKI RNLILCFGFM LGLHAEENTT EGNMTEENIS KDAPILLEEK RAQTLEFKEE KEAKKNIDEK SLLEEIHKKK RQLYMLKGEL HEKNESLLFQ RMAKNKSGFF IGVILGDIGV SAHSYEKFEL LSNIQASPLL YGLRSGYQKY FANGISALRF YGEYLGGAMK GFKSDSLASY QTASLNIDLL MDKPIDKEKR FALGIFGGVG VGWNGMYQNL KEVKGYSQPN AFGLVLNLGV SMTLNLKHRF ELALKMPPLK ETSQTFLYYF KSTNIYYISY NYLL // ID O25312_HELPY Unreviewed; 273 AA. AC O25312; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Ferredoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:AAD07655.1}; GN OrderedLocusNames=HP_0590 {ECO:0000313|EMBL:AAD07655.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07655.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07655.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07655.1; -; Genomic_DNA. DR PIR; F64593; F64593. DR RefSeq; NP_207385.1; NC_000915.1. DR RefSeq; WP_000885323.1; NC_018939.1. DR ProteinModelPortal; O25312; -. DR STRING; 85962.HP0590; -. DR PaxDb; O25312; -. DR EnsemblBacteria; AAD07655; AAD07655; HP_0590. DR GeneID; 899285; -. DR KEGG; heo:C694_03045; -. DR KEGG; hpy:HP0590; -. DR PATRIC; 20592457; VBIHelPyl33062_0617. DR eggNOG; ENOG4105DQU; Bacteria. DR eggNOG; COG1013; LUCA. DR KO; K00175; -. DR OMA; FNNNIYG; -. DR OrthoDB; EOG647TWJ; -. DR BioCyc; HPY:HP0590-MONOMER; -. DR BioCyc; MetaCyc:HP0590-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR011766; TPP_enzyme-bd_C. DR Pfam; PF02775; TPP_enzyme_C; 1. DR SUPFAM; SSF52518; SSF52518; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 51 198 TPP_enzyme_C. {ECO:0000259|Pfam:PF02775}. SQ SEQUENCE 273 AA; 30415 MW; F3FD18A188AE32A8 CRC64; MAFNYDEYLR VDKIPTLWCW GCGDGVILKS IIRTIDALGW KMDDVCLVSG IGCSGRMSSY VNCNTVHTTH GRAVAYATGI KMANPSKHVI VVSGDGDGFA IGGNHTMHAC RRNIDLNFIL VNNFIYGLTN SQTSPTTPNG MWTVTAQWGN IDNQFDPCAL TTAAGASFVA RESVLDPQKL EKVLKEGFSH KGFSFFDVHS NCHINLGRKN KMGEASQMLK WMESRLVSKR QFEAMSPEER VDKFPTGVLK HDTDRKEYCE AYQEIIEKAQ GKQ // ID O25520_HELPY Unreviewed; 96 AA. AC O25520; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07912.1}; GN OrderedLocusNames=HP_0849 {ECO:0000313|EMBL:AAD07912.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07912.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07912.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07912.1; -; Genomic_DNA. DR PIR; A64626; A64626. DR RefSeq; NP_207642.1; NC_000915.1. DR RefSeq; WP_001863405.1; NC_018939.1. DR ProteinModelPortal; O25520; -. DR DIP; DIP-3537N; -. DR IntAct; O25520; 43. DR MINT; MINT-161909; -. DR STRING; 85962.HP0849; -. DR REBASE; 56840; S.Hpy26695ORF4355P. DR PaxDb; O25520; -. DR EnsemblBacteria; AAD07912; AAD07912; HP_0849. DR GeneID; 899378; -. DR KEGG; heo:C694_04350; -. DR KEGG; hpy:HP0849; -. DR OrthoDB; EOG6X10ZK; -. DR BioCyc; HPY:HP0849-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 96 AA; 11290 MW; 62A249AE8D0AA7D5 CRC64; MHKIEQLLQT LAPKGVEFRK LGDIILSLKT GLNPRKFFKL NTPNANNYYV TVRELEEYTI KFTHQTDRID DNALSLCLKR SNLEKDDIFY SLELEQ // ID O25677_HELPY Unreviewed; 131 AA. AC O25677; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08085.1}; GN OrderedLocusNames=HP_1033 {ECO:0000313|EMBL:AAD08085.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08085.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08085.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08085.1; -; Genomic_DNA. DR PIR; A64649; A64649. DR ProteinModelPortal; O25677; -. DR DIP; DIP-3625N; -. DR IntAct; O25677; 5. DR MINT; MINT-160750; -. DR STRING; 85962.HP1033; -. DR PaxDb; O25677; -. DR EnsemblBacteria; AAD08085; AAD08085; HP_1033. DR KEGG; heo:C694_05345; -. DR OMA; WLKRSKL; -. DR OrthoDB; EOG66B43W; -. DR BioCyc; HPY:HP1033-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 131 AA; 14893 MW; A71DA1AE681F5976 CRC64; MYSKILATSF SLFLNSWLKR SKLSSVPFLS KRQISKSVQA IKIDANNNAI KYPPSVDNTV HNKMLSGSLN FNTENTNPKK NPTTTEKWIK FCTFIQAYPK YFKSLLKKLF KPSFGISKAP VSNLETKRPA I // ID O25665_HELPY Unreviewed; 298 AA. AC O25665; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Response regulator {ECO:0000313|EMBL:AAD08065.1}; GN OrderedLocusNames=HP_1021 {ECO:0000313|EMBL:AAD08065.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08065.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08065.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08065.1; -; Genomic_DNA. DR PIR; E64647; E64647. DR RefSeq; NP_207811.1; NC_000915.1. DR RefSeq; WP_000697557.1; NC_018939.1. DR ProteinModelPortal; O25665; -. DR STRING; 85962.HP1021; -. DR PaxDb; O25665; -. DR DNASU; 899556; -. DR EnsemblBacteria; AAD08065; AAD08065; HP_1021. DR GeneID; 899556; -. DR KEGG; heo:C694_05280; -. DR KEGG; hpy:HP1021; -. DR PATRIC; 20593377; VBIHelPyl33062_1069. DR eggNOG; ENOG4105E83; Bacteria. DR eggNOG; COG0784; LUCA. DR OMA; FNNHTTF; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP1021-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR Gene3D; 1.10.10.60; -; 1. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR009057; Homeodomain-like. DR InterPro; IPR014483; Sig_transdc_resp-reg_prd. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR PIRSF; PIRSF016788; RR_Fis; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 109 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 298 AA; 35161 MW; 856FB59752D84745 CRC64; MKILIIEDDL ALARSISHNL HDLGHFCEII SSISEENKEP YDVILVSSKV CTQGRCEHFV RYNSKQIIIM MASHVNEDGV NKPIQAGARD YILKPFKMDE LLRKIQYHKA YQEMTARLGF YENYLDFIHA ELPLPKDFSY RPPFIIHTPS QELANAYLLQ YAKERQMDFS FFSLKDTTWK ELYKNKDKLE RPFYIMHLEE LKKDEQLKLL ELARSCPIVL SYTHKEPLEF PKIVSIECGN KPLSLFNNHT TFLSIQEYEK EAIRHFSSTC TDTELANKLG ISRKSLWEKR RKYNLPRK // ID O25452_HELPY Unreviewed; 292 AA. AC O25452; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Beta-alanine synthetase homolog {ECO:0000313|EMBL:AAD07805.1}; GN OrderedLocusNames=HP_0757 {ECO:0000313|EMBL:AAD07805.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07805.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07805.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07805.1; -; Genomic_DNA. DR PIR; E64614; E64614. DR RefSeq; NP_207550.1; NC_000915.1. DR RefSeq; WP_000562739.1; NC_018939.1. DR ProteinModelPortal; O25452; -. DR STRING; 85962.HP0757; -. DR PaxDb; O25452; -. DR EnsemblBacteria; AAD07805; AAD07805; HP_0757. DR GeneID; 898914; -. DR KEGG; heo:C694_03895; -. DR KEGG; hpy:HP0757; -. DR PATRIC; 20592803; VBIHelPyl33062_0790. DR eggNOG; ENOG4105CQP; Bacteria. DR eggNOG; COG0388; LUCA. DR KO; K12251; -. DR OMA; PGIQFWG; -. DR OrthoDB; EOG6H1Q2Z; -. DR BioCyc; HPY:HP0757-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 285 CN hydrolase. FT {ECO:0000259|PROSITE:PS50263}. SQ SEQUENCE 292 AA; 33235 MW; 86359BCB62E30175 CRC64; MICASVLQHA YCGSRKKTIE HTANLLEQAL KKHPKTNLVV LQELNPYSYF CQSENPKFFD LGEYFEEDKA FFSALAQKFQ VVLVASLFEK RAKGLYHNSA VVFEKDGSIA GVYRKMHIPD DPGFYEKFYF TPGDLGFEPI VTSVGKLGLM VCWDQWYPEA ARIMALKGAE ILIYPSAIGF LEEDSNEEKK RQQNAWETIQ RGHAIANGLP LIATNRVGVE LDPSGAIKGG ITFFGSSFVV GALGEFLAKA SDKEEILYAE IDLERTEEVR RMWPFLRDRR IDFYNDLLKR YI // ID O26062_HELPY Unreviewed; 18 AA. AC O26062; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08578.1}; GN OrderedLocusNames=HP_1536 {ECO:0000313|EMBL:AAD08578.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08578.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08578.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08578.1; -; Genomic_DNA. DR PIR; H64711; H64711. DR IntAct; O26062; 1. DR STRING; 85962.HP1536; -. DR PaxDb; O26062; -. DR PRIDE; O26062; -. DR EnsemblBacteria; AAD08578; AAD08578; HP_1536. DR BioCyc; HPY:HP1536-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 18 AA; 2296 MW; AC0B5A3DFD9CD482 CRC64; MKKYCRFLNH PSRNPKYL // ID O25538_HELPY Unreviewed; 153 AA. AC O25538; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07919.1}; GN OrderedLocusNames=HP_0868 {ECO:0000313|EMBL:AAD07919.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07919.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07919.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07919.1; -; Genomic_DNA. DR PIR; D64628; D64628. DR RefSeq; NP_207662.1; NC_000915.1. DR RefSeq; WP_001154698.1; NC_018939.1. DR ProteinModelPortal; O25538; -. DR DIP; DIP-3554N; -. DR IntAct; O25538; 9. DR MINT; MINT-160800; -. DR STRING; 85962.HP0868; -. DR PaxDb; O25538; -. DR EnsemblBacteria; AAD07919; AAD07919; HP_0868. DR GeneID; 899397; -. DR KEGG; heo:C694_04445; -. DR KEGG; hpy:HP0868; -. DR PATRIC; 20593025; VBIHelPyl33062_0900. DR eggNOG; ENOG4106EPT; Bacteria. DR eggNOG; ENOG410Y719; LUCA. DR OMA; QVIMAKP; -. DR OrthoDB; EOG6RVFX4; -. DR BioCyc; HPY:HP0868-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 5 69 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 153 AA; 18411 MW; 1546C259CEB7EBDF CRC64; MQEELNAYQQ EIEDTREVLK KIRLELKQVQ EILRKKKSAL KGLKQEIYQK KLEKENSRLN KETQNTQEDV IFPKALEEVE IYTKDNQVIV AKPSKRVFDE GIYLQYRSVL RENRLLKNHL SKKDFENSLL KIELRDLHKE IKLYQAQNLL KDK // ID O25315_HELPY Unreviewed; 598 AA. AC O25315; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Adenine specific DNA methyltransferase (Mod) {ECO:0000313|EMBL:AAD07659.1}; GN OrderedLocusNames=HP_0593 {ECO:0000313|EMBL:AAD07659.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07659.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07659.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07659.1; -; Genomic_DNA. DR PIR; A64594; A64594. DR ProteinModelPortal; O25315; -. DR DIP; DIP-3546N; -. DR IntAct; O25315; 5. DR MINT; MINT-174396; -. DR STRING; 85962.HP0593; -. DR REBASE; 3600; M.HpyAXI. DR PaxDb; O25315; -. DR PRIDE; O25315; -. DR EnsemblBacteria; AAD07659; AAD07659; HP_0593. DR PATRIC; 20592463; VBIHelPyl33062_0620. DR eggNOG; ENOG4107QMH; Bacteria. DR eggNOG; COG2189; LUCA. DR OMA; DSTENLY; -. DR OrthoDB; EOG6W9X8K; -. DR BioCyc; HPY:HP0593-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 3. DR InterPro; IPR002295; D21N6_MeTrfase. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PIRSF; PIRSF015855; TypeIII_Mtase_mKpnI; 1. DR PRINTS; PR00506; D21N6MTFRASE. DR SUPFAM; SSF53335; SSF53335; 3. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07659.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07659.1}. FT DOMAIN 98 440 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 598 AA; 68368 MW; D8617E74FBDD5B62 CRC64; MLLKNFPQTI KDGQVSLSAI KMLLGFNESM NDISGYELTW TGKGFANALY SEPCQKQLKL QESFTPQTSA SKHPNNAIII GDNLDALKLL KSAYSEKIKM IYIDPPYNTG NDEFIYPDNF RQDYQKILRE VGLMEIDENG KEIESESLKF FKNTQGSGTH SGWLSFMLPR LKLARDLLKE DGVIFISIDD NECANLKILC DEIFGEDNFV GDFIRKTKST TNDAKIGLNY QHEFLLCYAK DKNYTNLLGG EKNLENYKNP DNDPNGAWIN DNPSAKSGNM KTGYFGVTNP YTNKVDYPPV GMFWRFSQNT IQKHIDEGRI CFKKEHKDNE RGFIYKRYLK DLKTTQKTFD SLIFSDNCYM NQAATKELLN LGMGEYFTYP KGVEFMKKII LHSTTPNEGD IILDFFAGSG TTVHAVMELN AEDKGNREFI LVQIDEEIKE DESAYDFCKK ELKSAKPVIS DITIERVKRA AQKISQLSKD SGLDLGFKVY TLQDKVQIIN DKEEITLFNR SDLTPFDKAL NLALQCGKTL NQALEIIIKD KLYKCEDAYF CIVCDEEAQE YLAKSKNEMI FLDGYEEIDL EAFLNLNASF KERLSVVY // ID O25117_HELPY Unreviewed; 222 AA. AC O25117; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07425.1}; GN OrderedLocusNames=HP_0350 {ECO:0000313|EMBL:AAD07425.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07425.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07425.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07425.1; -; Genomic_DNA. DR PIR; F64563; F64563. DR RefSeq; NP_207148.1; NC_000915.1. DR RefSeq; WP_000829924.1; NC_018939.1. DR ProteinModelPortal; O25117; -. DR STRING; 85962.HP0350; -. DR PaxDb; O25117; -. DR EnsemblBacteria; AAD07425; AAD07425; HP_0350. DR GeneID; 898835; -. DR KEGG; heo:C694_01775; -. DR KEGG; hpy:HP0350; -. DR PATRIC; 20591933; VBIHelPyl33062_0363. DR eggNOG; COG0671; LUCA. DR OMA; CFSIGIY; -. DR OrthoDB; EOG6RNQKH; -. DR BioCyc; HPY:HP0350-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase. DR SUPFAM; SSF48317; SSF48317; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 96 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 159 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 171 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 219 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 222 AA; 24472 MW; 22EE5844AF6E3F18 CRC64; MAENSFKNVS TQPKVFFLLP AKTLFLLGGV FSAFFILIAG LVFFDYAHLM DNAIFNFARS TPFNSSPILT LILQNIANLG SSQFVLPLSL LVGVFLSLYR RNLVLGVWFV LSVILFEALL ESLKHLFAYS IQWLSRSANF PNATALSLVL FYGLLILLIP HLITHQTLKN VLFYSLFGLI FLIGLALIVL GVSFSSVLGG FCLGALGACF SIGIYLSVFQ KI // ID O24925_HELPY Unreviewed; 675 AA. AC O24925; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Methyl-accepting chemotaxis protein (TlpA) {ECO:0000313|EMBL:AAD07167.1}; GN OrderedLocusNames=HP_0099 {ECO:0000313|EMBL:AAD07167.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07167.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07167.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07167.1; -; Genomic_DNA. DR PIR; C64532; C64532. DR RefSeq; NP_206899.1; NC_000915.1. DR RefSeq; WP_000033553.1; NC_018939.1. DR ProteinModelPortal; O24925; -. DR DIP; DIP-3302N; -. DR IntAct; O24925; 3. DR MINT; MINT-183285; -. DR STRING; 85962.HP0099; -. DR PaxDb; O24925; -. DR EnsemblBacteria; AAD07167; AAD07167; HP_0099. DR GeneID; 899077; -. DR KEGG; heo:C694_00485; -. DR KEGG; hpy:HP0099; -. DR PATRIC; 20591409; VBIHelPyl33062_0104. DR eggNOG; ENOG4105C8Q; Bacteria. DR eggNOG; COG0840; LUCA. DR KO; K03406; -. DR OMA; LRSMQDS; -. DR OrthoDB; EOG693GJ5; -. DR BioCyc; HPY:HP0099-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR InterPro; IPR004089; MCPsignal_dom. DR Pfam; PF00015; MCPsignal; 1. DR SMART; SM00283; MA; 1. DR PROSITE; PS50111; CHEMOTAXIS_TRANSDUC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 302 322 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 475 675 Methyl-accepting transducer. FT {ECO:0000259|PROSITE:PS50111}. SQ SEQUENCE 675 AA; 74466 MW; 9AB7D470034B74A6 CRC64; MSKGLSIGNK IILCVALIVI VCVSILGVSL NSRVKEILKE SALHSMQDSL HFKVNEVQGV LENTYTSMGI VKEMLPKDTK REIKIGLLKN FILANSHVAG VSMFFKGRED LRLTLLRDNN TIKLVENPSL ENSPLAQKAM KNKEISKSLG YYRKMPNGAE VYGVDILLPL LNENAQEVVG ALMIFISIDS FSNEITKNRS DLFLIGTKGK VLLSANKSLQ DKPIAEIYKS VPKATNEVMA ILENGSKATL EYLDPFSHKE NFLAVETFKM LGKTESKDNL NWMIALIIEK DKVYEQVGSV RFVVIIASAI MVLALIIAIT LLMRAIVSSR LEAVSSTLSH FFKLLNNQAN SSGIKLIEAK SNDELGRMQT AINKNILQTQ KIMQEDRQAV QDTIKVVSDV KAGNFAVRIT AEPASPDLKE LRDALNGIMD YLQESVGTHM PSIFKIFESY SGLDFRGRIQ NASGRVELVT NALGQEIQKM LETSSNFAKD LANDSANLKE CVQNLEKASN SQHKSLMETS KTIENITTSI QGVSSQSEAM IEQGQDIKSI VEIIRDIADQ TNLLALNAAI EAARAGEHGR GFAVVADEVR KLAERTQKSL SEIEANINIL VQSISDTSES IKNQVKEVEE INASIEALRS VTEGNLKIAS DSLEISQEID KVSNDILEDV NKKQF // ID O25228_HELPY Unreviewed; 250 AA. AC O25228; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07553.1}; GN OrderedLocusNames=HP_0484 {ECO:0000313|EMBL:AAD07553.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07553.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07553.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07553.1; -; Genomic_DNA. DR PIR; D64580; D64580. DR RefSeq; NP_207281.1; NC_000915.1. DR RefSeq; WP_000482941.1; NC_018939.1. DR ProteinModelPortal; O25228; -. DR IntAct; O25228; 1. DR REBASE; 56849; Hpy26695ORFGP. DR PaxDb; O25228; -. DR EnsemblBacteria; AAD07553; AAD07553; HP_0484. DR GeneID; 898755; -. DR KEGG; heo:C694_02490; -. DR KEGG; hpy:HP0484; -. DR PATRIC; 20592243; VBIHelPyl33062_0510. DR OMA; VDTHIIY; -. DR OrthoDB; EOG618QQV; -. DR BioCyc; HPY:HP0484-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 250 AA; 29379 MW; 82D7B9B8CF27AF38 CRC64; MFNNNDFKDY RKLLGFGSQN AFKEFLGAKD IQPCVDFNDL NALKKRLIEI FSAINSIYCF KYNEYELECF FKNSIERVFS KIVDTHIIYK LNNQGRRPEE VCFSWMRGFL VAEFFKDFIA CLFSAQKETI KFFGGDNFEN IESFKRSPKA DFLLDNHLLL EVQSDFQGIN DIKEHKVLEA KRRLITDKVP TIVVHFDLFN GQVACVEISK IKDNDLNWIT RQQMEGQSVF NISQNFFDYK ITEIPNKPLS // ID O25435_HELPY Unreviewed; 153 AA. AC O25435; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=Xanthine guanine phosphoribosyl transferase (Gpt) {ECO:0000313|EMBL:AAD07781.1}; GN OrderedLocusNames=HP_0735 {ECO:0000313|EMBL:AAD07781.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07781.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07781.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07781.1; -; Genomic_DNA. DR PIR; G64611; G64611. DR RefSeq; NP_207529.1; NC_000915.1. DR RefSeq; WP_000559456.1; NC_018939.1. DR ProteinModelPortal; O25435; -. DR DIP; DIP-3570N; -. DR IntAct; O25435; 1. DR MINT; MINT-167614; -. DR STRING; 85962.HP0735; -. DR PaxDb; O25435; -. DR DNASU; 898938; -. DR EnsemblBacteria; AAD07781; AAD07781; HP_0735. DR GeneID; 898938; -. DR KEGG; heo:C694_03775; -. DR KEGG; hpy:HP0735; -. DR PATRIC; 20592757; VBIHelPyl33062_0767. DR eggNOG; ENOG4105K9M; Bacteria. DR eggNOG; COG2236; LUCA. DR KO; K00769; -. DR OMA; DTTHRQN; -. DR OrthoDB; EOG6H1Q23; -. DR BioCyc; HPY:HP0735-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.2020; -; 1. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF00156; Pribosyltran; 1. DR SUPFAM; SSF53271; SSF53271; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU000395, KW ECO:0000313|EMBL:AAD07781.1}. FT DOMAIN 26 147 Pribosyltran. {ECO:0000259|Pfam:PF00156}. SQ SEQUENCE 153 AA; 17638 MW; 2EE2B23C631330AB CRC64; MHYSYETFLK DSLELVKQVE QICGVPEALV CVMRGGMTLA HFLSLHWNLR EVYGINAISY DTTKQQNALK IENIPTIKER LKTILVVDEI VDSGNSLEAV LKVLEEKHPD KKFYSASLFQ KTSAKYKADA FLKDAPEWID FFWEVDLKNL KSH // ID O25224_HELPY Unreviewed; 282 AA. AC O25224; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07549.1}; GN OrderedLocusNames=HP_0479 {ECO:0000313|EMBL:AAD07549.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07549.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07549.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07549.1; -; Genomic_DNA. DR PIR; G64579; G64579. DR RefSeq; NP_207277.1; NC_000915.1. DR RefSeq; WP_000557801.1; NC_018939.1. DR ProteinModelPortal; O25224; -. DR STRING; 85962.HP0479; -. DR REBASE; 56851; Hpy26695ORF2450P. DR PaxDb; O25224; -. DR EnsemblBacteria; AAD07549; AAD07549; HP_0479. DR GeneID; 900060; -. DR KEGG; heo:C694_02455; -. DR KEGG; hpy:HP0479; -. DR PATRIC; 20592229; VBIHelPyl33062_0503. DR eggNOG; COG0859; LUCA. DR OMA; ENIPAFY; -. DR OrthoDB; EOG62G5KQ; -. DR BioCyc; HPY:HP0479-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR InterPro; IPR002201; Glyco_trans_9. DR Pfam; PF01075; Glyco_transf_9; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 282 AA; 33268 MW; 5EBBE48ADCE5A8E1 CRC64; MHVACLLALG DNLITLSLLK EIAFKQQQPL KILGTRLTLK IAKLLECEKH FEIIPLFENV PAFYDLKKQG VFLAMKDFLW LLKAIKKHQI KRLILEKQDF RSTFLAKFIP ITTPNKEIKN VYQNRQELFS QIYGHVFDNP PYPMNLKNPK KILINPFTRS IDRSIPLEHL QIVLKLLKPF CVTLLDFEER YAFLKDRVAH YRAKTSLEEV KNLILESDLY IGGDSFLIHL AYYLKKNYFI FFYRDNDDFM PPNSKNKNFL KAHKSHSIEQ DLAKKFRHLG LL // ID O25407_HELPY Unreviewed; 158 AA. AC O25407; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07758.1}; GN OrderedLocusNames=HP_0702 {ECO:0000313|EMBL:AAD07758.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07758.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07758.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07758.1; -; Genomic_DNA. DR PIR; F64607; F64607. DR RefSeq; NP_207496.1; NC_000915.1. DR RefSeq; WP_000984425.1; NC_000915.1. DR ProteinModelPortal; O25407; -. DR STRING; 85962.HP0702; -. DR PaxDb; O25407; -. DR PRIDE; O25407; -. DR EnsemblBacteria; AAD07758; AAD07758; HP_0702. DR GeneID; 899316; -. DR KEGG; hpy:HP0702; -. DR PATRIC; 20592691; VBIHelPyl33062_0734. DR OMA; QVAITHY; -. DR OrthoDB; EOG6BCST5; -. DR BioCyc; HPY:HP0702-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 158 AA; 18336 MW; F7934D503C15C1AD CRC64; MMRFFSFFYF LFYFLGVSLQ ALSPLEDQEF LISYRLKIVD SRVMGEEYSV SKPIVSRIKT APYVLDYHCS IITRNLPNLK NPLLPIKLER FLLEIALKKE KERVIDCILK SQVAITHYDH SYKNGTTTTS ILALKALSVR ASLVGDALFL DIFRKEEE // ID O25992_HELPY Unreviewed; 746 AA. AC O25992; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08493.1}; GN OrderedLocusNames=HP_1453 {ECO:0000313|EMBL:AAD08493.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08493.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08493.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08493.1; -; Genomic_DNA. DR PIR; E64701; E64701. DR RefSeq; NP_208244.1; NC_000915.1. DR RefSeq; WP_000915379.1; NC_018939.1. DR ProteinModelPortal; O25992; -. DR DIP; DIP-3425N; -. DR IntAct; O25992; 2. DR MINT; MINT-187388; -. DR STRING; 85962.HP1453; -. DR PaxDb; O25992; -. DR EnsemblBacteria; AAD08493; AAD08493; HP_1453. DR GeneID; 899840; -. DR KEGG; heo:C694_07525; -. DR KEGG; hpy:HP1453; -. DR PATRIC; 20594313; VBIHelPyl33062_1525. DR OMA; AYNQESA; -. DR OrthoDB; EOG64XXH2; -. DR BioCyc; HPY:HP1453-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 746 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157785. SQ SEQUENCE 746 AA; 82360 MW; 19E043245C12FDCB CRC64; MLKLASKTIC LSLIGSFTAV EAFQKHQKDG FFIEAGFETG LLQGTQTKEQ TIATTQEKPK PKPKPKPITP QSTYGKYYIS QSTVLKNATE LFAEDNITNL TFYSLTPVYV TAYNQESAEE AGYGDSSLIM IQNFLPYNLN NIELSYTDNQ GNVVSLGVIE TIPKQSQIIL PASLFNDPQL NADGFQQLQT ATTRFSDAST QNLFDKLSKV TTNLQMTYIN YNQFSSGNGS GSKPPCPPYE NQENCTAKVP PFTSQDAKNL TNLMLNMMAV FDSKSWEDAV KNAPFQFSDN NLSAPCYSNY STCVNPYNDG LVDPKLIAKN KGDEYNIENG QTGSVILTPQ DVIYSYRVTN NLYVNLLPPR GGDLGLGSQY GGPNGPGDDG TNFGALGILS PFLDPEILFG KELNKVAIMQ LRDIIHEYGH TLGYTHNGNM TYQRVRMCEE NNGPEERCKG GKIEQVDGQE VQVFDNGHEV RDTDGSFYDV CSRFGGQNQP AFPSSYPNSI YTDCSQVPAG LIGVTSAVWQ QLIDQNALPV DYTNLSSQTN YLNASLNTQD FATTMLSAIS QSLSSTRSSA TTYRTSKTSR PFGAPLLGVN LKMGYQKYFN DYLGLSSYGI IKYNYAQANN EKIQQLSYGV GMDVLFDFIT NYTNEKNPKN NLTKKVFTSS LGVFGGLRGL YNSYYLLNQY KGSGNLNVTG GLNYRYKHSK YSVGISVPLV QLKSRVVSSD GATTNSITLN EGGSHFKVFF NYGWIF // ID O25564_HELPY Unreviewed; 527 AA. AC O25564; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07958.1}; GN OrderedLocusNames=HP_0906 {ECO:0000313|EMBL:AAD07958.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07958.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07958.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07958.1; -; Genomic_DNA. DR PIR; B64633; B64633. DR RefSeq; NP_207698.1; NC_000915.1. DR RefSeq; WP_001139893.1; NC_018939.1. DR ProteinModelPortal; O25564; -. DR STRING; 85962.HP0906; -. DR PaxDb; O25564; -. DR EnsemblBacteria; AAD07958; AAD07958; HP_0906. DR GeneID; 899435; -. DR KEGG; heo:C694_04665; -. DR KEGG; hpy:HP0906; -. DR PATRIC; 20593113; VBIHelPyl33062_0942. DR eggNOG; ENOG410886E; Bacteria. DR eggNOG; ENOG410ZYW3; LUCA. DR OMA; PITPTNH; -. DR OrthoDB; EOG6MWN70; -. DR BioCyc; HPY:HP0906-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR021136; Flagellar_hook_control-like_C. DR Pfam; PF02120; Flg_hook; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 401 482 Flg_hook. {ECO:0000259|Pfam:PF02120}. SQ SEQUENCE 527 AA; 58161 MW; C36FCB03D7FAAE98 CRC64; MPSPINPIHT NASANANALN SGAKNEDAKN APKSASKDFS KILNQKISKD KTAPKENPNA LKTTPQNSKE GAKEDAKTLE KTPTLPHQHA QNPAKDQQAP TLKDWLNHKK TTTPHETQHE THEANETNPK TPNETLNKNE KKPNGVTSSV HQTNLTNKNP ITPTNHANNA IKNPTAPTDT KKEPKTLKDI QTLSQKHDLN ASNIQAATTP ENKNPLNASD QLALKTTQTP TNHTLAKNDA KNTANLSSVL QSLEKKEPQN KEHANPLNNE KKTPPLKEAL EMNAIKRDKT LSKKKSEKTP IHAKTQTTAP SATPENAPKI PLKTPPLMPL IGANPPPNDN IPTPLEKEEK AKEASDNKEK TKETSNSAQN AQNTQASDKT SDNKSTAPKE TIKHFTQQLK QEIQEYKPPM SRISMDLFPK ELGKVEVIIQ KVGKNLKVSV ISHNNSLQTF LDNQQDLKNS LNALGFEGVD LSFSQDSSKE QQAPKDQPKE PFKEQELTPL KENALKSYQE NTDNENQETS MQITLYA // ID O25106_HELPY Unreviewed; 116 AA. AC O25106; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07411.1}; GN OrderedLocusNames=HP_0339 {ECO:0000313|EMBL:AAD07411.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07411.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07411.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07411.1; -; Genomic_DNA. DR PIR; C64562; C64562. DR RefSeq; NP_207137.1; NC_000915.1. DR RefSeq; WP_010875465.1; NC_018939.1. DR ProteinModelPortal; O25106; -. DR DIP; DIP-3368N; -. DR IntAct; O25106; 24. DR MINT; MINT-160173; -. DR STRING; 85962.HP0339; -. DR PaxDb; O25106; -. DR PRIDE; O25106; -. DR EnsemblBacteria; AAD07411; AAD07411; HP_0339. DR GeneID; 899039; -. DR KEGG; hpy:HP0339; -. DR PATRIC; 20591913; VBIHelPyl33062_0353. DR eggNOG; ENOG4108VH1; Bacteria. DR eggNOG; ENOG4111JK8; LUCA. DR KO; K01185; -. DR OMA; QFIKGYR; -. DR OrthoDB; EOG63Z79J; -. DR BioCyc; HPY:HP0339-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003796; F:lysozyme activity; IEA:InterPro. DR Gene3D; 1.10.530.40; -; 2. DR InterPro; IPR023346; Lysozyme-like_dom. DR InterPro; IPR023347; Lysozyme_dom. DR SUPFAM; SSF53955; SSF53955; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 116 AA; 13527 MW; B491A70DF7F086C5 CRC64; MDSEGFSPSI YTDKTGHPTI GYGYNLSVYS YEGKRITKTY GLLTDILSYG WYKNLDAMRR MVILDLSYNL GLNGLLKFKQ FIKAIEDKNY ALAVERLQKS PYFNQVKKER QGIWKF // ID O25179_HELPY Unreviewed; 12 AA. AC O25179; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07512.1}; GN OrderedLocusNames=HP_0429 {ECO:0000313|EMBL:AAD07512.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07512.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07512.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07512.1; -; Genomic_DNA. DR PIR; E64573; E64573. DR PRIDE; O25179; -. DR EnsemblBacteria; AAD07512; AAD07512; HP_0429. DR BioCyc; HPY:HP0429-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 12 AA; 1375 MW; 20959A84E2133338 CRC64; MNENGKKEAL QL // ID O25139_HELPY Unreviewed; 143 AA. AC O25139; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07449.1}; GN OrderedLocusNames=HP_0375 {ECO:0000313|EMBL:AAD07449.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07449.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07449.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07449.1; -; Genomic_DNA. DR PIR; G64566; G64566. DR RefSeq; NP_207173.1; NC_000915.1. DR RefSeq; WP_000892087.1; NC_018939.1. DR ProteinModelPortal; O25139; -. DR STRING; 85962.HP0375; -. DR PaxDb; O25139; -. DR EnsemblBacteria; AAD07449; AAD07449; HP_0375. DR GeneID; 900089; -. DR KEGG; heo:C694_01905; -. DR KEGG; hpy:HP0375; -. DR PATRIC; 20591987; VBIHelPyl33062_0387. DR OMA; GVFIWAM; -. DR OrthoDB; EOG65QWMZ; -. DR BioCyc; HPY:HP0375-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 76 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 101 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 142 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 143 AA; 16310 MW; B9E6715A18B26218 CRC64; MLEMSLQALN TQDSSVMAQS LLIHAFFAAL LALAFMINLY TLFKEKNFIQ LNKKIYLVMP AIYILLSIAL LSGIFIWAMQ QFAFSFSVVA MLLGLLLMLI AEIKRHKSVK LAITKKERME AYIKKAKILY FLETILIVVL MGL // ID O25219_HELPY Unreviewed; 246 AA. AC O25219; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Molybdenum ABC transporter, periplasmic molybdate-binding protein (ModA) {ECO:0000313|EMBL:AAD07541.1}; GN OrderedLocusNames=HP_0473 {ECO:0000313|EMBL:AAD07541.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07541.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07541.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07541.1; -; Genomic_DNA. DR PIR; A64579; A64579. DR RefSeq; NP_207271.1; NC_000915.1. DR RefSeq; WP_000798928.1; NC_018939.1. DR ProteinModelPortal; O25219; -. DR STRING; 85962.HP0473; -. DR PaxDb; O25219; -. DR EnsemblBacteria; AAD07541; AAD07541; HP_0473. DR GeneID; 899073; -. DR KEGG; heo:C694_02425; -. DR KEGG; hpy:HP0473; -. DR PATRIC; 20592217; VBIHelPyl33062_0497. DR eggNOG; ENOG4107TG6; Bacteria. DR eggNOG; COG0725; LUCA. DR KO; K02020; -. DR OMA; FEKDTGH; -. DR OrthoDB; EOG680X4N; -. DR BioCyc; HPY:HP0473-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030288; C:outer membrane-bounded periplasmic space; IEA:InterPro. DR GO; GO:0015412; F:molybdate transmembrane-transporting ATPase activity; IEA:InterPro. DR InterPro; IPR005950; Mo_ABC_perip-bd. DR PIRSF; PIRSF004846; ModA; 1. DR TIGRFAMs; TIGR01256; modA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 246 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157895. SQ SEQUENCE 246 AA; 27595 MW; E5BFF0D8E9B213BD CRC64; MKNTFKAFAF LIVFFSSALL AQDLKIAAAA NLTRALKALV KEFQKEHPKD TVNISFNSSG KLYAQIIQNA PFDLFISADM IRPKKLYDKK ITPFKEEVYA KGVLVLWSED LKMDSLEILK NPKIKRIAMA NPKLAPYGKA SMEVLENLKL TPSLKSKIVY GASISQAHQF VATKNAQIGF GALSLMDKKD KNLSYFIIDK ALYNPIEQAL IITKNGANNP LAKVFKDFLF SPKARAIFKE YGYIVD // ID O25663_HELPY Unreviewed; 443 AA. AC O25663; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=Serine protease (HtrA) {ECO:0000313|EMBL:AAD08063.1}; GN OrderedLocusNames=HP_1019 {ECO:0000313|EMBL:AAD08063.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08063.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08063.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08063.1; -; Genomic_DNA. DR PIR; C64647; C64647. DR ProteinModelPortal; O25663; -. DR DIP; DIP-3313N; -. DR IntAct; O25663; 5. DR MINT; MINT-177319; -. DR STRING; 85962.HP1019; -. DR MEROPS; S01.500; -. DR PaxDb; O25663; -. DR PRIDE; O25663; -. DR EnsemblBacteria; AAD08063; AAD08063; HP_1019. DR PATRIC; 20593373; VBIHelPyl33062_1067. DR eggNOG; ENOG4105C0H; Bacteria. DR eggNOG; COG0265; LUCA. DR OMA; GIQSFIQ; -. DR OrthoDB; EOG61ZTDN; -. DR BioCyc; HPY:HP1019-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 2. DR InterPro; IPR001478; PDZ. DR InterPro; IPR011782; Pept_S1C_Do. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR001940; Peptidase_S1C. DR Pfam; PF13180; PDZ_2; 2. DR PRINTS; PR00834; PROTEASES2C. DR SMART; SM00228; PDZ; 2. DR SUPFAM; SSF50156; SSF50156; 2. DR SUPFAM; SSF50494; SSF50494; 1. DR TIGRFAMs; TIGR02037; degP_htrA_DO; 1. DR PROSITE; PS50106; PDZ; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD08063.1}; KW Protease {ECO:0000313|EMBL:AAD08063.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 233 322 PDZ (DHR). {ECO:0000259|PROSITE:PS50106}. FT DOMAIN 342 411 PDZ (DHR). {ECO:0000259|PROSITE:PS50106}. SQ SEQUENCE 443 AA; 47984 MW; 03FDDBD72CF31EE2 CRC64; MSPLKTIRIY SYHDSIKDSI KAVVNISTEK KIKNNFIGGG VFNDPFFQQF FGDLGGMIPK ERMERALGSG VIISKDGYIV TNNHVIDGAD KIKVTIPGSN KEYSATLVGT DSESDLAVIR ITKDNLPTIK FSDSNDISVG DLVFAIGNPF GVGESVTQGI VSALNKSGIG INSYENFIQT DASINPGNSG GALIDSRGGL VGINTAIISK TGGNHGIGFA IPSNMVKDTV TQLIKTGKIE RGYLGVGLQD LSGDLQNSYD NKEGAVVISV EKDSPAKKAG ILVWDLITEV NGKKVKNTNE LRNLIGSMLP NQRVTLKVIR DKKERAFTLT LAERKNPNKK ETISAQNGAQ GQLNGLQVED LTQETKRSMR LSDDVQGVLV SQVNENSPAE QAGFRQGNII TKIEEVEVKS VADFNHALEK YKGKPKRFLV LDLNQGYRII LVK // ID O25197_HELPY Unreviewed; 472 AA. AC O25197; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07518.1}; GN OrderedLocusNames=HP_0449 {ECO:0000313|EMBL:AAD07518.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07518.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07518.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07518.1; -; Genomic_DNA. DR PIR; A64576; A64576. DR RefSeq; NP_207247.1; NC_000915.1. DR RefSeq; WP_000394021.1; NC_018939.1. DR ProteinModelPortal; O25197; -. DR DIP; DIP-3254N; -. DR IntAct; O25197; 6. DR MINT; MINT-162714; -. DR STRING; 85962.HP0449; -. DR PaxDb; O25197; -. DR PRIDE; O25197; -. DR EnsemblBacteria; AAD07518; AAD07518; HP_0449. DR GeneID; 900067; -. DR KEGG; hpy:HP0449; -. DR PATRIC; 20592157; VBIHelPyl33062_0467. DR OMA; IRVECKN; -. DR OrthoDB; EOG6FV81G; -. DR BioCyc; HPY:HP0449-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 426 461 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 472 AA; 56240 MW; 0BD18F36849DFE32 CRC64; MEFFADSSFK AESLYYPKEN NKSLNVNEII IRKTIETSIK YHKQDTLRHA KVVSWHVLGE VYYLHAKAFD DSKEIRVECK NHPIEKMAEK LEETNPEWFE KWREKQYTQT GESKPSKRIK VFKNFTAFDD RLYTIECNLK NLDTHQKKFE ICGALYDIYE QIFDETPSLK GRDLETYKAQ DLSKKFMHLG FEQISKDLND SRLNALLCYE EKVMQALAKK YPSFLQDLHD IKKYRNKDKH GEKPQDGSSL TRVELERYRD GIYFLVENLL KNPLIKEREN AQEEKHYKKN AEIDDRSQLS NLNAPKPLFE CFVGVNLAKA KYYSKKEERE KEKMILNFCK IFEIILFEAI QKQPKPDFKN KDELLGDYPN LKNLDSLREV REDFLKRAFK NDEASLGAYV LVLLSCKYFE SVFEKVQEWL DFIARLIALR GHVHKITKEL ERLEEEDLEK LEKQALEYFN KIANKIYLKE KR // ID O25631_HELPY Unreviewed; 121 AA. AC O25631; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Exonuclease VII-like protein (XseA) {ECO:0000313|EMBL:AAD08027.1}; GN OrderedLocusNames=HP_0981 {ECO:0000313|EMBL:AAD08027.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08027.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08027.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08027.1; -; Genomic_DNA. DR PIR; E64642; E64642. DR ProteinModelPortal; O25631; -. DR IntAct; O25631; 2. DR STRING; 85962.HP0981; -. DR PaxDb; O25631; -. DR PRIDE; O25631; -. DR EnsemblBacteria; AAD08027; AAD08027; HP_0981. DR PATRIC; 20593279; VBIHelPyl33062_1021. DR eggNOG; COG1570; LUCA. DR OMA; PVNHSEP; -. DR OrthoDB; EOG64R65J; -. DR BioCyc; HPY:HP0981-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008855; F:exodeoxyribonuclease VII activity; IEA:InterPro. DR InterPro; IPR020579; Exonuc_VII_lsu_C. DR Pfam; PF02601; Exonuc_VII_L; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Exonuclease {ECO:0000313|EMBL:AAD08027.1}; KW Hydrolase {ECO:0000313|EMBL:AAD08027.1}; KW Nuclease {ECO:0000313|EMBL:AAD08027.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 32 105 Exonuc_VII_L. {ECO:0000259|Pfam:PF02601}. SQ SEQUENCE 121 AA; 13939 MW; 8489CC44B4A768F6 CRC64; MKKIKPIKQM IATCKKTLFK SYGYYLARTF SMSAIGHESD FLLSDLVADL RASTPSNAME ILLPNSDEWL QKLDGFNVKL HRSFKILLHQ KKAHLEHLAD FLEKRNYPVN HSEPGSQALH R // ID O26029_HELPY Unreviewed; 272 AA. AC O26029; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08545.1}; GN OrderedLocusNames=HP_1499 {ECO:0000313|EMBL:AAD08545.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08545.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08545.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08545.1; -; Genomic_DNA. DR PIR; C64707; C64707. DR RefSeq; NP_208290.1; NC_000915.1. DR RefSeq; WP_001863157.1; NC_018939.1. DR ProteinModelPortal; O26029; -. DR STRING; 85962.HP1499; -. DR PaxDb; O26029; -. DR EnsemblBacteria; AAD08545; AAD08545; HP_1499. DR GeneID; 899792; -. DR KEGG; heo:C694_07765; -. DR KEGG; hpy:HP1499; -. DR PATRIC; 20594409; VBIHelPyl33062_1573. DR eggNOG; ENOG410829Q; Bacteria. DR eggNOG; COG3886; LUCA. DR OMA; IYMFDNG; -. DR OrthoDB; EOG6M9DSH; -. DR BioCyc; HPY:HP1499-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR InterPro; IPR025202; PLD-like_dom. DR InterPro; IPR001736; PLipase_D/transphosphatidylase. DR Pfam; PF13091; PLDc_2; 1. DR SMART; SM00155; PLDc; 1. DR PROSITE; PS50035; PLD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 97 127 PLD phosphodiesterase. FT {ECO:0000259|PROSITE:PS50035}. SQ SEQUENCE 272 AA; 30885 MW; 68DAFF6865BF49E8 CRC64; MSSVQILSNL NYPKVITEGL RNSLNTHIAV AFLKYSGVEV IQDTLIDSLE KGAEFEIIVG LDFKTTDSKS IRFLLDLNKT YKKLRFYCYG DKENNKTDIV FHPKIYMFDN GKEKTSIIGS TNLTKGGLEN NFEVNTIFTE KKPLYYTQLN AIYNSIKYAD SLFTPNEEYL QNYNEVFSAI IKNEQKVSKD KSIQEKIKEI EKQEKLLPGT IPSIKAMIVE FIFACEKKGV KQVALQDIYQ ALEERIKKKS GDTNTKAILL GTLSGANSTT MC // ID O25519_HELPY Unreviewed; 298 AA. AC O25519; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Type I restriction enzyme S protein (HsdS) {ECO:0000313|EMBL:AAD07897.1}; GN OrderedLocusNames=HP_0848 {ECO:0000313|EMBL:AAD07897.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07897.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07897.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25521:HP_0850; NbExp=3; IntAct=EBI-9265942, EBI-7503998; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07897.1; -; Genomic_DNA. DR PIR; H64625; H64625. DR RefSeq; NP_207641.1; NC_000915.1. DR RefSeq; WP_010875552.1; NC_000915.1. DR ProteinModelPortal; O25519; -. DR IntAct; O25519; 2. DR STRING; 85962.HP0848; -. DR REBASE; 4212; S.HpyAORF848P. DR PaxDb; O25519; -. DR PRIDE; O25519; -. DR EnsemblBacteria; AAD07897; AAD07897; HP_0848. DR GeneID; 899377; -. DR KEGG; hpy:HP0848; -. DR PATRIC; 20592987; VBIHelPyl33062_0881. DR eggNOG; ENOG41082EK; Bacteria. DR eggNOG; COG0732; LUCA. DR KO; K01154; -. DR OMA; YLASKDN; -. DR OrthoDB; EOG6PKF94; -. DR BioCyc; HPY:HP0848-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 8 66 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 109 275 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 298 AA; 34561 MW; 865C3C03C2EBD6D3 CRC64; MFCFENLNIQ NDIKSKSFGG IVKSISMNDL QQITIPIPPL EIQQEIVKIL DAFTELNTEL NTELKARKKQ YEYYQNMLLD FNDINQNHKD AKIKTYPKRL KTLLHTLAPK GVEFRKLGEV CESTNKKTLK ISEVSEVKNK GMYPVINSGR DLYGYYHDFN NDGENITIAS RGEYAGFINY FNEKFFAGGL CYPYKVKDTN ELLTKFLYFY LKTNEIQIME NLVFRGSIPA LNKADIETLT IPIPPLEIQQ EIVKILDQFS ALTTDLLAGI PAEIKARKKQ YEYYREKLLT FKPLQNKE // ID O25034_HELPY Unreviewed; 487 AA. AC O25034; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp7) {ECO:0000313|EMBL:AAD07319.1}; GN OrderedLocusNames=HP_0252 {ECO:0000313|EMBL:AAD07319.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07319.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07319.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07319.1; -; Genomic_DNA. DR PIR; D64551; D64551. DR RefSeq; NP_207050.1; NC_000915.1. DR RefSeq; WP_000788704.1; NC_018939.1. DR ProteinModelPortal; O25034; -. DR DIP; DIP-3370N; -. DR IntAct; O25034; 3. DR MINT; MINT-176225; -. DR STRING; 85962.HP0252; -. DR PaxDb; O25034; -. DR EnsemblBacteria; AAD07319; AAD07319; HP_0252. DR GeneID; 900192; -. DR KEGG; heo:C694_01280; -. DR KEGG; hpy:HP0252; -. DR PATRIC; 20591731; VBIHelPyl33062_0263. DR OMA; SASMNGF; -. DR OrthoDB; EOG6VQPPV; -. DR BioCyc; HPY:HP0252-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}. FT CHAIN 24 487 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157885. SQ SEQUENCE 487 AA; 53380 MW; ADE747A056DC1055 CRC64; MKNHSFKKTI ALSLLASMSL CRAEEDGAFF VIDYQTSLAR QELKNPGFTQ AQELRQLIRD GAVRLQTSAI PLSYYLDILG NKTATLLRES LKNNAQPSQP NAQPPQQNGP SNQALANLEQ SLGILGKLLD LSQQYASQGV IKPLVVDVGK EQIGITDSML LVAQNIVLAL GQVDLSKIQQ NNNEQLYENI MKVMLLGAGG TNGAYNGVSV GDIATGMQNF SSQTGLIGAN STVSELNALI KSGISLDRET LGLGSFIEKN ICSGASSCFS GNQLIYKKGL DRTINIINTV LGQFESSASS LYKISYIPNL FSLKDYQSAS MNGFGAKMGY KQFFTHKKNV GLRYYGFLDY GYANFGDTNL KVGANLVTYG VGTDFLYNVY ERSRRRERTT IGLFFGAQIA GQTWSTNVTN LLSGQRPDVK SSSFQFLFDL GVRTNFAKTN FNKHRLDQGI EFGVKIPVIA HKYFATQGSS ASYMRNFSFY VGYSVGF // ID O25493_HELPY Unreviewed; 205 AA. AC O25493; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07862.1}; GN OrderedLocusNames=HP_0813 {ECO:0000313|EMBL:AAD07862.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07862.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07862.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07862.1; -; Genomic_DNA. DR PIR; E64621; E64621. DR RefSeq; NP_207606.1; NC_000915.1. DR RefSeq; WP_000404680.1; NC_018939.1. DR ProteinModelPortal; O25493; -. DR STRING; 85962.HP0813; -. DR PaxDb; O25493; -. DR DNASU; 898807; -. DR EnsemblBacteria; AAD07862; AAD07862; HP_0813. DR GeneID; 898807; -. DR KEGG; heo:C694_04165; -. DR KEGG; hpy:HP0813; -. DR PATRIC; 20592913; VBIHelPyl33062_0845. DR eggNOG; ENOG4105C5X; Bacteria. DR eggNOG; COG0491; LUCA. DR OMA; PAWIHPE; -. DR OrthoDB; EOG69GZQ4; -. DR BioCyc; HPY:HP0813-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR Pfam; PF00753; Lactamase_B; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 12 184 Lactamase_B. {ECO:0000259|SMART:SM00849}. SQ SEQUENCE 205 AA; 23464 MW; 9FD355E0B19C2DBE CRC64; MEILRRECGA VEENAYIVKL SSGIDFIIDP GFSSSEWVLE NAKNPKAILI THGHYDHVWD GAQLSKLLKN TPIYAPKDDV FMLENDIFHL GMPVFSPNFS VPCNKGCTTL EIANTTIKYW HFPGHTPGCS IIEIEGVIFS GDFIFYRSIG RYDFPYSNEK DMKESLLRFQ NLDFPKDIEI YPGHGDKTSF FAEREHSKIW VSRMA // ID O26037_HELPY Unreviewed; 385 AA. AC O26037; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Conserved hypothetical ATP-binding protein {ECO:0000313|EMBL:AAD08549.1}; GN OrderedLocusNames=HP_1507 {ECO:0000313|EMBL:AAD08549.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08549.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08549.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08549.1; -; Genomic_DNA. DR PIR; C64708; C64708. DR RefSeq; NP_208298.1; NC_000915.1. DR RefSeq; WP_000225600.1; NC_000915.1. DR ProteinModelPortal; O26037; -. DR STRING; 85962.HP1507; -. DR PaxDb; O26037; -. DR PRIDE; O26037; -. DR EnsemblBacteria; AAD08549; AAD08549; HP_1507. DR GeneID; 899784; -. DR KEGG; hpy:HP1507; -. DR PATRIC; 20594429; VBIHelPyl33062_1583. DR eggNOG; COG1748; LUCA. DR KO; K00290; -. DR OMA; PIQFLKT; -. DR OrthoDB; EOG690MF2; -. DR BioCyc; HPY:HP1507-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR032095; Sacchrp_dh_C. DR InterPro; IPR005097; Sacchrp_dh_NADP. DR Pfam; PF16653; Sacchrp_dh_C; 1. DR Pfam; PF03435; Sacchrp_dh_NADP; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD08549.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD08549.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 121 Sacchrp_dh_NADP. FT {ECO:0000259|Pfam:PF03435}. FT DOMAIN 127 378 Sacchrp_dh_C. {ECO:0000259|Pfam:PF16653}. SQ SEQUENCE 385 AA; 43904 MW; 75AD9D400084B0F7 CRC64; MVAHKMGMNR DVFKNIILAS RSLDKCYAIK ESMLKKGLGE IGVEQVDADD TQALVALIQK YKPKVVINVA LPYQDLTIMQ ACLETKTHYI DTANYEHPDL AKFEYKEQWA FDRAYKEVGI LGVLGAGFDP GVTNAYVAHA QKHHFDTIHT LDILDCNAGD HKRPFATNFN PEINLREVSS KGRYYENGKW IETKPLEIKQ VWAYPQIGEM DSYLLYHEEL ESLVKNIKGL RRARFFMTFS QNYLTHMKCL ENVGMLGIKE IEHQGVKIVP IQFLKTLLPD PATLAKDTTG KTNIGCYMTG IKNNQDKTLY IYNVCDHKKC YEEVGSQAIS YTTGVPAMCA AKMICNDTWS ADHFRTGVFN IEELNTDPFM EELIKQGLPY EVIER // ID O25975_HELPY Unreviewed; 293 AA. AC O25975; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 96. DE SubName: Full=Formyltetrahydrofolate hydrolase (PurU) {ECO:0000313|EMBL:AAD08476.1}; GN OrderedLocusNames=HP_1434 {ECO:0000313|EMBL:AAD08476.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08476.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08476.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08476.1; -; Genomic_DNA. DR PIR; B64699; B64699. DR RefSeq; NP_208225.1; NC_000915.1. DR RefSeq; WP_000889170.1; NC_018939.1. DR ProteinModelPortal; O25975; -. DR DIP; DIP-3364N; -. DR IntAct; O25975; 4. DR MINT; MINT-184955; -. DR STRING; 85962.HP1434; -. DR PaxDb; O25975; -. DR EnsemblBacteria; AAD08476; AAD08476; HP_1434. DR GeneID; 899861; -. DR KEGG; heo:C694_07425; -. DR KEGG; hpy:HP1434; -. DR PATRIC; 20594271; VBIHelPyl33062_1505. DR eggNOG; ENOG4105CIY; Bacteria. DR eggNOG; COG0788; LUCA. DR KO; K01433; -. DR OMA; IQDTLPI; -. DR OrthoDB; EOG615VP4; -. DR BioCyc; HPY:HP1434-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0008864; F:formyltetrahydrofolate deformylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016742; F:hydroxymethyl-, formyl- and related transferase activity; IEA:InterPro. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.170; -; 1. DR HAMAP; MF_01927; PurU; 1. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR002376; Formyl_transf_N. DR InterPro; IPR004810; PurU. DR PANTHER; PTHR10520:SF7; PTHR10520:SF7; 1. DR Pfam; PF00551; Formyl_trans_N; 1. DR PRINTS; PR01575; FFH4HYDRLASE. DR SUPFAM; SSF53328; SSF53328; 1. DR TIGRFAMs; TIGR00655; PurU; 1. DR PROSITE; PS51671; ACT; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD08476.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 77 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 293 AA; 33649 MW; 366C56AD796B7F6A CRC64; MLEFILKIQA RDSKGLVSTI STTIANKGYN IVKNDEFVDP LKQRFFMRLK IQKEIKPLNT EIKEQEEQSL KTALFKALEN FNELLIEVIL THKKNIILLA TKESHCLGDL LLRVYGGELN AQILGVISNH EILRPLVEKF DIPYFYAPCD NQVLHEKEVL EIIKNLELKH KVSADLLVLA KYMRILSHDF TKRYENQILN IHHSFLPAFI GANPYQQAFE RGVKVIGATA HFVNESLDAG PIIIQDTLPI NHNYSVEKMR LAGKDIEKLV LARALKLVLE DRVFVHENKT VVF // ID O26044_HELPY Unreviewed; 30 AA. AC O26044; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08560.1}; GN OrderedLocusNames=HP_1515 {ECO:0000313|EMBL:AAD08560.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08560.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08560.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08560.1; -; Genomic_DNA. DR PIR; C64709; C64709. DR PaxDb; O26044; -. DR PRIDE; O26044; -. DR EnsemblBacteria; AAD08560; AAD08560; HP_1515. DR OrthoDB; EOG6BKJKK; -. DR BioCyc; HPY:HP1515-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 30 AA; 3733 MW; 385CAE2C268BF6CB CRC64; MRKNHSKYSW ETLYLKISFL GFCLELKIKR // ID O25025_HELPY Unreviewed; 94 AA. AC O25025; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07312.1}; GN OrderedLocusNames=HP_0242 {ECO:0000313|EMBL:AAD07312.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07312.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07312.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2BO3} RP X-RAY CRYSTALLOGRAPHY (2.27 ANGSTROMS). RX PubMed=16395670; DOI=10.1002/prot.20864; RA Tsai J.Y., Chen B.T., Cheng H.C., Chen H.Y., Hsaio N.W., Lyu P.C., RA Sun Y.J.; RT "Crystal structure of HP0242, a hypothetical protein from Helicobacter RT pylori with a novel fold."; RL Proteins 62:1138-1143(2006). RN [3] {ECO:0000213|PDB:3MLI} RP X-RAY CRYSTALLOGRAPHY (2.90 ANGSTROMS) OF 1-92. RX PubMed=21068371; DOI=10.1073/pnas.1007602107; RA King N.P., Jacobitz A.W., Sawaya M.R., Goldschmidt L., Yeates T.O.; RT "Structure and folding of a designed knotted protein."; RL Proc. Natl. Acad. Sci. U.S.A. 107:20732-20737(2010). RN [4] {ECO:0000213|PDB:4U12} RP X-RAY CRYSTALLOGRAPHY (1.94 ANGSTROMS). RA Grabowski M., Shabalin I.G., Chruszcz M., Skarina T., Onopriyenko O., RA Guthrie J., Savchenko A., Edwards A., Joachimiak A., Minor W.; RT "Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 RT A resolution: a knotted homodimer."; RL Submitted (JUL-2014) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07312.1; -; Genomic_DNA. DR PIR; B64550; B64550. DR RefSeq; NP_207040.1; NC_000915.1. DR RefSeq; WP_001206044.1; NC_018939.1. DR PDB; 2BO3; X-ray; 2.27 A; A=1-94. DR PDB; 3MLI; X-ray; 2.90 A; A/B/C/D=1-92. DR PDB; 4U12; X-ray; 1.94 A; A=1-94. DR PDBsum; 2BO3; -. DR PDBsum; 3MLI; -. DR PDBsum; 4U12; -. DR ProteinModelPortal; O25025; -. DR SMR; O25025; 13-92. DR DIP; DIP-3295N; -. DR MINT; MINT-160244; -. DR STRING; 85962.HP0242; -. DR PaxDb; O25025; -. DR EnsemblBacteria; AAD07312; AAD07312; HP_0242. DR GeneID; 900124; -. DR KEGG; heo:C694_01225; -. DR KEGG; hpy:HP0242; -. DR PATRIC; 20591709; VBIHelPyl33062_0253. DR OMA; IFHASRK; -. DR OrthoDB; EOG65J56M; -. DR BioCyc; HPY:HP0242-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.3350.10; -; 1. DR InterPro; IPR018563; DUF2018. DR InterPro; IPR023126; HP0242-like_domain. DR Pfam; PF09442; DUF2018; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2BO3, ECO:0000213|PDB:2OUF, KW ECO:0000213|PDB:3MLI, ECO:0000213|PDB:4U12}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 94 AA; 11087 MW; F24320C4026D795F CRC64; MRDYSELEIF EGNPLDKWND IIFHASKKLS KKELERLLEL LALLETFIEK EDLEEKFESF AKALRIDEEL QQKIESRKTD IVIQSMANIL SGNE // ID O26002_HELPY Unreviewed; 377 AA. AC O26002; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08507.1}; GN OrderedLocusNames=HP_1466 {ECO:0000313|EMBL:AAD08507.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08507.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08507.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000256|RuleBase:RU362044}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU362044}. CC -!- SIMILARITY: Belongs to the MlaE permease family. CC {ECO:0000256|RuleBase:RU362044}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08507.1; -; Genomic_DNA. DR PIR; B64703; B64703. DR RefSeq; NP_208257.1; NC_000915.1. DR RefSeq; WP_000845765.1; NC_018939.1. DR ProteinModelPortal; O26002; -. DR STRING; 85962.HP1466; -. DR PaxDb; O26002; -. DR EnsemblBacteria; AAD08507; AAD08507; HP_1466. DR GeneID; 899827; -. DR KEGG; heo:C694_07590; -. DR KEGG; hpy:HP1466; -. DR PATRIC; 20594343; VBIHelPyl33062_1540. DR eggNOG; ENOG4105CY3; Bacteria. DR eggNOG; COG0767; LUCA. DR KO; K02066; -. DR OMA; NACALKV; -. DR OrthoDB; EOG6RJV8Q; -. DR BioCyc; HPY:HP1466-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR003453; ABC_MlaE_Proteobac. DR InterPro; IPR030802; Permease_MalE. DR PANTHER; PTHR30188; PTHR30188; 1. DR Pfam; PF02405; MlaE; 1. DR TIGRFAMs; TIGR00056; TIGR00056; 1. PE 3: Inferred from homology; KW Cell inner membrane {ECO:0000256|RuleBase:RU362044}; KW Cell membrane {ECO:0000256|RuleBase:RU362044}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU362044}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU362044}; KW Transmembrane helix {ECO:0000256|RuleBase:RU362044}. FT TRANSMEM 131 150 Helical. {ECO:0000256|RuleBase:RU362044}. FT TRANSMEM 171 195 Helical. {ECO:0000256|RuleBase:RU362044}. FT TRANSMEM 260 290 Helical. {ECO:0000256|RuleBase:RU362044}. FT TRANSMEM 310 337 Helical. {ECO:0000256|RuleBase:RU362044}. FT TRANSMEM 349 372 Helical. {ECO:0000256|RuleBase:RU362044}. SQ SEQUENCE 377 AA; 42452 MW; 24973CD4BDAE1D1F CRC64; MKTEKQKFLE MRKDGANSVL ILRGDWDFKT SVFRLDELKK NLLDHQGPLK MDFSGCQKVD FVFGMFLFDL VKERSLNIEL CNVSENNACA LKVVKDWLEK EEDLESKKAG KHYELLITKL GKSIVETYNT FLNAFNFCGM ILFYFIKSVF NPKRFCITPL LYHINESGFK VLPVSILTVF IVGFAVALQG ALQLQDMGAP LMSVEMTAKL ALREIGPFIL TLVVAGRSAS SFTAQIGVMK ITEELDAMKT MGFNPFEFLV LPRVLALVIV LPLLVFIADA FAILGGMFAI KYQLDLGFPS YIDRFHDTVG WNHFLVGIVK APFWGFAIAM VGCMRGFEVK GDTESIGRLT TISVVNALFW IIFLDAIFSI IFSKLNI // ID O24941_HELPY Unreviewed; 286 AA. AC O24941; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp4) {ECO:0000313|EMBL:AAD07197.1}; GN OrderedLocusNames=HP_0127 {ECO:0000313|EMBL:AAD07197.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07197.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07197.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07197.1; -; Genomic_DNA. DR PIR; G64535; G64535. DR RefSeq; NP_206927.1; NC_000915.1. DR RefSeq; WP_000750174.1; NC_018939.1. DR ProteinModelPortal; O24941; -. DR STRING; 85962.HP0127; -. DR PaxDb; O24941; -. DR EnsemblBacteria; AAD07197; AAD07197; HP_0127. DR GeneID; 899087; -. DR KEGG; heo:C694_00630; -. DR KEGG; hpy:HP0127; -. DR PATRIC; 20591471; VBIHelPyl33062_0135. DR OMA; AQNCSNG; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP0127-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 286 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157797. SQ SEQUENCE 286 AA; 31891 MW; 2FD836C1301CD8A7 CRC64; MKKSVIVGAI SLAMTSLLSA ETPKQEKAIK TSPTKKGERN AAFIGIDYQL GMLSTTAQNC SHGNCNGNQS GAYGSNTPNM PTASNPTGGF THGALGTRGY KGLSNQQYAI NGFGFVVGYK HFFKKSPQFG MRYYGFFDFA SSYYKYYTYN DYGMRDARKG SQSFMFGYGA GTDVLFNPAI FNRENLHFGF FLGVAIGGTS WGPTNYYFKD LADEYRGSFH PSNFQVLVNG GIRLGTKHQG FEIGLKIQTI RNNYYTASAD NVPEGTTYRF TFHRPYAFYW RYIVSF // ID O26040_HELPY Unreviewed; 117 AA. AC O26040; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08552.1}; GN OrderedLocusNames=HP_1510 {ECO:0000313|EMBL:AAD08552.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08552.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08552.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08552.1; -; Genomic_DNA. DR PIR; F64708; F64708. DR RefSeq; NP_208301.1; NC_000915.1. DR RefSeq; WP_000850887.1; NC_018939.1. DR ProteinModelPortal; O26040; -. DR DIP; DIP-3219N; -. DR IntAct; O26040; 6. DR MINT; MINT-175534; -. DR STRING; 85962.HP1510; -. DR PaxDb; O26040; -. DR EnsemblBacteria; AAD08552; AAD08552; HP_1510. DR GeneID; 899781; -. DR KEGG; heo:C694_07820; -. DR KEGG; hpy:HP1510; -. DR PATRIC; 20594435; VBIHelPyl33062_1586. DR eggNOG; ENOG41060Z3; Bacteria. DR eggNOG; COG1539; LUCA. DR KO; K01633; -. DR OMA; LDYMEIQ; -. DR OrthoDB; EOG6G20SM; -. DR BioCyc; HPY:HP1510-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004150; F:dihydroneopterin aldolase activity; IEA:InterPro. DR GO; GO:0006760; P:folic acid-containing compound metabolic process; IEA:InterPro. DR InterPro; IPR006157; FolB_dom. DR Pfam; PF02152; FolB; 1. DR SMART; SM00905; FolB; 1. DR TIGRFAMs; TIGR00526; folB_dom; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 7 113 FolB. {ECO:0000259|SMART:SM00905}. SQ SEQUENCE 117 AA; 13772 MW; 25FD7A21B219D2DA CRC64; MKTKQGVHIH NLVFEAILGI LEFERLKPQK ISVNLDLFYT QLPNKVYLDY MEIQELIQKM MQENQYLLIE DALKDLSHAL KTRYKEITEL YLKISKLEIS PNSQVGASVK IRYESNL // ID O25274_HELPY Unreviewed; 370 AA. AC O25274; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Cag pathogenicity island protein (Cag20) {ECO:0000313|EMBL:AAD07607.1}; GN OrderedLocusNames=HP_0541 {ECO:0000313|EMBL:AAD07607.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07607.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07607.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07607.1; -; Genomic_DNA. DR PIR; E64587; E64587. DR RefSeq; NP_207337.1; NC_000915.1. DR RefSeq; WP_010875497.1; NC_000915.1. DR ProteinModelPortal; O25274; -. DR IntAct; O25274; 1. DR STRING; 85962.HP0541; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25274; -. DR EnsemblBacteria; AAD07607; AAD07607; HP_0541. DR GeneID; 899272; -. DR KEGG; heo:C694_02790; -. DR KEGG; hpy:HP0541; -. DR PATRIC; 20592353; VBIHelPyl33062_0565. DR KO; K12105; -. DR OMA; NASQMIL; -. DR OrthoDB; EOG6TTVK4; -. DR BioCyc; HPY:HP0541-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 53 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 370 AA; 39437 MW; FD1F3E6F4D574608 CRC64; MAGTQAIYES SSAGFLSEIS SIISSTSGVA GPFAGIVAGA MSAAIIPIVV GFTNPQMTAI MTQYNQSIAE AVSMPMKAAN QQYNQLYQGF NDQSMAVGNN ILNISKLTGE FNVQGNTQGA QISAVNSQIA SILASNTTPK NPSAIEAYAT NQIAVPSVPT TVEMMSGILG NITSAAPKYA LALQEQLRSQ ASNSSMNDTA DSLDSCTALG ALVGSSKVFF SCMQISMTPM SVSMPTVYAK YQALXTNALT SGTNPMTTPA CPIGDKVLAV YCYAEKVAEI LREYYIEFVK NNTNLLQNAS QMILNQSGLA TSTYDTQAIS NISSLYNYNI VANKSFLKSH LTYLDYIKNK LKGQKDSYLT ERVQTKIIVK // ID O25090_HELPY Unreviewed; 180 AA. AC O25090; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Membrane bound endonuclease (Nuc) {ECO:0000313|EMBL:AAD07391.1}; GN OrderedLocusNames=HP_0323 {ECO:0000313|EMBL:AAD07391.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07391.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07391.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07391.1; -; Genomic_DNA. DR PIR; C64560; C64560. DR RefSeq; NP_207121.1; NC_000915.1. DR RefSeq; WP_000932524.1; NC_018939.1. DR ProteinModelPortal; O25090; -. DR STRING; 85962.HP0323; -. DR PaxDb; O25090; -. DR EnsemblBacteria; AAD07391; AAD07391; HP_0323. DR GeneID; 900100; -. DR KEGG; heo:C694_01635; -. DR KEGG; hpy:HP0323; -. DR PATRIC; 20591879; VBIHelPyl33062_0337. DR eggNOG; ENOG4105K6D; Bacteria. DR eggNOG; COG1502; LUCA. DR OMA; YLAKYNN; -. DR OrthoDB; EOG6PW23S; -. DR BioCyc; HPY:HP0323-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW. DR InterPro; IPR025202; PLD-like_dom. DR InterPro; IPR001736; PLipase_D/transphosphatidylase. DR Pfam; PF13091; PLDc_2; 1. DR SMART; SM00155; PLDc; 1. DR PROSITE; PS50035; PLD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Endonuclease {ECO:0000313|EMBL:AAD07391.1}; KW Hydrolase {ECO:0000313|EMBL:AAD07391.1}; KW Nuclease {ECO:0000313|EMBL:AAD07391.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 119 146 PLD phosphodiesterase. FT {ECO:0000259|PROSITE:PS50035}. SQ SEQUENCE 180 AA; 20150 MW; 6D8E5A576A37841D CRC64; MLNKFKKIVG VSVLVGCLGV LQAKNSLFVL PYEQKDALNS LVSGISNARE SVKIAIYSFT HRDIARAIKS VASRGIKVQI IYDYESNHHN KQSTIGYLDK YPNTKVCLLK GLKAKNGNYY GIMHQKVAII DDKIVFLGSA NWSKNAFENN YEVLLKTDDT ETILKAKSYY QKMLGSCVGF // ID O25017_HELPY Unreviewed; 265 AA. AC O25017; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07309.1}; GN OrderedLocusNames=HP_0231 {ECO:0000313|EMBL:AAD07309.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07309.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07309.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3TDG} RP X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS). RX PubMed=22062156; DOI=10.1016/j.febslet.2011.10.042; RA Yoon J.Y., Kim J., Lee S.J., Kim H.S., Im H.N., Yoon H.J., Kim K.H., RA Kim S.J., Han B.W., Suh S.W.; RT "Structural and functional characterization of Helicobacter pylori RT DsbG."; RL FEBS Lett. 585:3862-3867(2011). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07309.1; -; Genomic_DNA. DR PIR; G64548; G64548. DR RefSeq; NP_207029.1; NC_000915.1. DR RefSeq; WP_000603200.1; NC_018939.1. DR PDB; 3TDG; X-ray; 2.10 A; A=1-265. DR PDBsum; 3TDG; -. DR ProteinModelPortal; O25017; -. DR DIP; DIP-3269N; -. DR IntAct; O25017; 8. DR MINT; MINT-159311; -. DR STRING; 85962.HP0231; -. DR PaxDb; O25017; -. DR EnsemblBacteria; AAD07309; AAD07309; HP_0231. DR GeneID; 899084; -. DR KEGG; heo:C694_01165; -. DR KEGG; hpy:HP0231; -. DR PATRIC; 20591687; VBIHelPyl33062_0242. DR eggNOG; ENOG4105N9J; Bacteria. DR eggNOG; COG1651; LUCA. DR KO; K03981; -. DR OMA; FESGMIK; -. DR OrthoDB; EOG6GXTTK; -. DR BioCyc; HPY:HP0231-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR SUPFAM; SSF52833; SSF52833; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3TDG}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 265 AA; 29459 MW; 19CCBFC8A7D11514 CRC64; MILRASVLSA LLLVGLGAAP KHSVSANDKR MQDNLVSVIE KQTNKKVRIL EIKPLKSSQD LKMVVIEDPD TKYNIPLVVS KDGNLIIGLS NIFFSNKSDD VQLVAETNQK VQALNATQQN SAKLNAIFNE IPADYAIELP STNAANKDKI LYIVSDPMCP HCQKELTKLR DHLKENTVRM VVVGWLGVNS AKKAALIQEE MAKARARGAS VEDKISILEK IYSTQYDINA QKEPEDLRTK VENTTKKIFE SGVIKGVPFL YHYKA // ID O26023_HELPY Unreviewed; 449 AA. AC O26023; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08525.1}; GN OrderedLocusNames=HP_1490 {ECO:0000313|EMBL:AAD08525.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08525.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08525.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08525.1; -; Genomic_DNA. DR PIR; B64706; B64706. DR RefSeq; NP_208281.1; NC_000915.1. DR RefSeq; WP_000533332.1; NC_000915.1. DR ProteinModelPortal; O26023; -. DR DIP; DIP-3088N; -. DR IntAct; O26023; 5. DR MINT; MINT-159596; -. DR STRING; 85962.HP1490; -. DR PaxDb; O26023; -. DR PRIDE; O26023; -. DR EnsemblBacteria; AAD08525; AAD08525; HP_1490. DR GeneID; 899802; -. DR KEGG; hpy:HP1490; -. DR PATRIC; 20594391; VBIHelPyl33062_1564. DR eggNOG; ENOG4105C37; Bacteria. DR eggNOG; COG1253; LUCA. DR OMA; FTRYPYC; -. DR OrthoDB; EOG6JMMQF; -. DR BioCyc; HPY:HP1490-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0016614; F:oxidoreductase activity, acting on CH-OH group of donors; IEA:InterPro. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR002550; DUF21. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR005170; Transptr-assoc_dom. DR Pfam; PF00571; CBS; 2. DR Pfam; PF03471; CorC_HlyC; 1. DR Pfam; PF01595; DUF21; 1. DR SMART; SM00116; CBS; 2. DR SMART; SM01091; CorC_HlyC; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAAS:SAAS00460213, ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAAS:SAAS00460213, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00460213, KW ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 67 88 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 111 136 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 157 178 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 233 295 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 298 355 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 449 AA; 50435 MW; 544E5B0852F8896A CRC64; MGRNQGAYLD PSESILMLMV AFLLVLLNAF FVLSEFALVK VRKTRLEELV KIGNSNAKLA LKMSQRLDTY LSATQLGITL SSLALGWVGE PAIAKLLAAL FESMDLRENP IFIHSMSVVI AFLSITFLHV VLGEIVPKSL AIAKSEKATL FAARPLHVFW VVFYPVVRLF DVIAHFFLKK MGINPKEHDG THSEEELKII VGESLREGII DSVEGEIIKN AXDFSDTSAK EIMTPRKDMV CLDEENSYEE NIDIVLKGHF TRYPYCKGSK DNIIGMVHIR DLLSRSIFTP KMHDFNQIVR KMIIVPESAS ISQILIKMKK EQIHTALVID EYGGTAGLLT MEDIIEEIMG EISDEYDLKQ EGINKLEEGV FELEGMLDLE SVEEALHIEF DKECEQVTLG GYVFSLLERM PMEGDTIVSH GYSFEVLSVD GARIKRLKAV KQDQGENEA // ID O25995_HELPY Unreviewed; 210 AA. AC O25995; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08499.1}; GN OrderedLocusNames=HP_1457 {ECO:0000313|EMBL:AAD08499.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08499.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08499.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08499.1; -; Genomic_DNA. DR PIR; A64702; A64702. DR RefSeq; NP_208248.1; NC_000915.1. DR RefSeq; WP_000925186.1; NC_018939.1. DR ProteinModelPortal; O25995; -. DR STRING; 85962.HP1457; -. DR PaxDb; O25995; -. DR EnsemblBacteria; AAD08499; AAD08499; HP_1457. DR GeneID; 899836; -. DR KEGG; heo:C694_07545; -. DR KEGG; hpy:HP1457; -. DR PATRIC; 20594323; VBIHelPyl33062_1530. DR eggNOG; COG3417; LUCA. DR KO; K07337; -. DR OMA; VINDTMQ; -. DR OrthoDB; EOG66MQP0; -. DR BioCyc; HPY:HP1457-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR014094; LpoB. DR Pfam; PF13036; LpoB; 1. DR TIGRFAMs; TIGR02722; lp_; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 28 {ECO:0000256|SAM:SignalP}. FT CHAIN 29 210 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157827. SQ SEQUENCE 210 AA; 23231 MW; 36904AB1628E8E65 CRC64; MLLKTKLKII SSVILSALLW VGCSSEMATY QNVNDATKNT TASINSTDLL LTANAMLDSM FSDPNFEQLK GKHLIEVSDV INDTTQPNLD MNLLTTEIAR QLRLRSNGRF NITRASGGSG IAADSRMVKQ REKERESEEY NQDTTVEKGT LKAADLSLSG KVSSIAASIS SSRQRLDYDF TLSLTNRKTG EEVWSDVKPI VKNASNKRMF // ID O25732_HELPY Unreviewed; 348 AA. AC O25732; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 108. DE SubName: Full=Cinnamyl-alcohol dehydrogenase ELI3-2 (Cad) {ECO:0000313|EMBL:AAD08150.1}; GN OrderedLocusNames=HP_1104 {ECO:0000313|EMBL:AAD08150.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08150.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08150.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08150.1; -; Genomic_DNA. DR PIR; H64657; H64657. DR RefSeq; NP_207895.1; NC_000915.1. DR RefSeq; WP_001265981.1; NC_018939.1. DR ProteinModelPortal; O25732; -. DR STRING; 85962.HP1104; -. DR PaxDb; O25732; -. DR EnsemblBacteria; AAD08150; AAD08150; HP_1104. DR GeneID; 899640; -. DR KEGG; heo:C694_05695; -. DR KEGG; hpy:HP1104; -. DR PATRIC; 20593547; VBIHelPyl33062_1153. DR eggNOG; ENOG4105DQ4; Bacteria. DR eggNOG; COG1064; LUCA. DR KO; K13979; -. DR OMA; FARNEHK; -. DR OrthoDB; EOG66XBFN; -. DR BioCyc; HPY:HP1104-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 29 145 ADH_N. {ECO:0000259|Pfam:PF08240}. FT DOMAIN 187 305 ADH_zinc_N. {ECO:0000259|Pfam:PF00107}. SQ SEQUENCE 348 AA; 38646 MW; 07D7E1A63048EF48 CRC64; MRVQSKGFAI FSKDGHFKPH DFSRHAVGPK DVLIDILYAG ICHSDIHSAY SEWKEGIYPM VPGHEIAGAI KEVGKEVKKF KVGDVVGVGC FVNSCKACKP CKEHQEQFCA KVVFTYDCLD YFHDNEPHMG GYSNNIVVDE NYVISVDKNA PLEKVAPLLC AGITTYSPLK FSKVTKGTKV GVAGFGGLGS MAVKYAVAMG AEVSVFARNE HKKQDALSMG VKHFYTDPKQ CKEELDFIIS TIPTHYDLKD YLKLLTYNGD LALVGLPPVE IAPALSVFDF IHLGNRKVYG SLIGGIKETQ EMMDFSIKHN IYPEIDLILG KDIDTAYHNL THGKAKFRYV IDMKKSFD // ID O25401_HELPY Unreviewed; 257 AA. AC O25401; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07748.1}; GN OrderedLocusNames=HP_0694 {ECO:0000313|EMBL:AAD07748.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07748.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07748.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07748.1; -; Genomic_DNA. DR PIR; F64606; F64606. DR ProteinModelPortal; O25401; -. DR STRING; 85962.HP0694; -. DR PaxDb; O25401; -. DR PRIDE; O25401; -. DR EnsemblBacteria; AAD07748; AAD07748; HP_0694. DR PATRIC; 20592675; VBIHelPyl33062_0726. DR eggNOG; COG3528; LUCA. DR OrthoDB; EOG6GBM7N; -. DR BioCyc; HPY:HP0694-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR018707; DUF2219. DR Pfam; PF09982; DUF2219; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}. FT CHAIN 18 257 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158023. SQ SEQUENCE 257 AA; 29958 MW; 4A06774E5B1EACF4 CRC64; MFFKFILCLL LGVFAWAKED IPTPLTPSKR YSINLMTEND GYINPYIDEY YTAGNQIGFS TKEFDFSKNK AMKWTSYLGF FNKSPRVTRF GISLAQDMYT PSLKNRKLVH LHDNHPYGGY LRVNLNVYNR HKTFMELFTL SLGTTGQDSL AAQTQRLIHK WGHDPQFYGW NTQLKNEFIF ELHYQLLKKV PLLKTRFFSM ELMPGFNVEL GNARDYFQLG SLFRAGYNLD ADYGVNKVNT AFDGGMPYSD KFSIYFL // ID O25431_HELPY Unreviewed; 573 AA. AC O25431; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07790.1}; GN OrderedLocusNames=HP_0731 {ECO:0000313|EMBL:AAD07790.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07790.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07790.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07790.1; -; Genomic_DNA. DR PIR; C64611; C64611. DR RefSeq; NP_207525.1; NC_000915.1. DR RefSeq; WP_000787447.1; NC_018939.1. DR ProteinModelPortal; O25431; -. DR IntAct; O25431; 3. DR STRING; 85962.HP0731; -. DR PaxDb; O25431; -. DR EnsemblBacteria; AAD07790; AAD07790; HP_0731. DR GeneID; 899325; -. DR KEGG; heo:C694_03760; -. DR KEGG; hpy:HP0731; -. DR PATRIC; 20592749; VBIHelPyl33062_0763. DR OMA; FNADRSF; -. DR OrthoDB; EOG6TTVJC; -. DR BioCyc; HPY:HP0731-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01926; MMR_HSR1; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 58 163 G (guanine nucleotide-binding). FT {ECO:0000259|Pfam:PF01926}. FT COILED 186 213 {ECO:0000256|SAM:Coils}. FT COILED 292 336 {ECO:0000256|SAM:Coils}. FT COILED 484 511 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 573 AA; 66056 MW; 85A763DFFC6CEEB7 CRC64; MKNETLEQFK RNQKRNQEIL KKLLDFVHAG EKYGIQIEES LKDKIRNAIK NVADQKLKVA LVGGFSEGKT SIAAAWIDRL DEGMKIDHQE SSDAVKIYDI DNEMELVDTP GLFGFKEKIT DSGKIERYKD ITKKYISEAH LILYALNPSN PIKDSHKDDL NWLFRTLNLL SRTIFVISRF DEEADIEDEE DYNKRFEIKK ENVQNRLNDL ISLSEKEKEG LSIVAVAANP YDLGVEHWLK HKEEFQKLSH IKTLQDATQK KIKENGGKLT IIEEAKKSVI QDVVYRQMPP AKQALQDINR EMEYLNKTLE KRRKEIQNLN SEISQARINL REFITRYFSD LIRQVLGTSL ETFNDFVIRE IGDKGTNIDT RVQNEFERQT QGIVNEISKI ETGFNADRSF FEKHAGTLGK IGINFLNKSG FINATNIKLA RDTIAAAGKF VGVDLAFKFK PWGAVNLAGN LNKGLPLIGL AFEVWDSWKE SQKIEKLEKA KREMESDFNN QKQEILDLIN NETRFKQTCF PMALELEKCI QECEESVKKT QECTQGLEKW IQTGEDLIKG EDFIEVEPER GMN // ID O25979_HELPY Unreviewed; 338 AA. AC O25979; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Conserved hypothetical lipoprotein {ECO:0000313|EMBL:AAD08478.1}; GN OrderedLocusNames=HP_1438 {ECO:0000313|EMBL:AAD08478.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08478.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08478.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08478.1; -; Genomic_DNA. DR PIR; F64699; F64699. DR RefSeq; NP_208229.1; NC_000915.1. DR RefSeq; WP_000465600.1; NC_018939.1. DR ProteinModelPortal; O25979; -. DR DIP; DIP-3601N; -. DR IntAct; O25979; 12. DR MINT; MINT-185606; -. DR STRING; 85962.HP1438; -. DR PaxDb; O25979; -. DR EnsemblBacteria; AAD08478; AAD08478; HP_1438. DR GeneID; 899857; -. DR KEGG; heo:C694_07445; -. DR KEGG; hpy:HP1438; -. DR PATRIC; 20594279; VBIHelPyl33062_1509. DR OMA; DYPYINL; -. DR OrthoDB; EOG6QZMPD; -. DR BioCyc; HPY:HP1438-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Lipoprotein {ECO:0000313|EMBL:AAD08478.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 84 118 {ECO:0000256|SAM:Coils}. FT COILED 270 297 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 338 AA; 38761 MW; 603186E619FFB538 CRC64; MFFKTYQKLL GASCLTLYLA GCGSDSSEPL VGIEKNSFNS TVKIISKTDN IEIQDLKLNR GNCEHDQNFL VKLIQETANT YLFASEKEKA IKNHQAKIAR LQKDLEELTQ HVQQSNNLDK LLENGGLFVS GHDYKYTKDD NPIYVVKRML DNLDSYKYES DDVLDVPYEK LLEISIAIED TKNPKDYPYI NLKELKKLID SIIDDHGYMA DGFLNEYSNR VSKKGLQILA KLKSMWPSVG KFYFASLKEA IPRHAKEVTD KMISSEEKSI KANQVKLTEA KQDIDKMEKI IKDLESKKNT LSVYLKFGES FTAHYKCQNL IEVGVKTDKG SWTFNFNR // ID O25682_HELPY Unreviewed; 429 AA. AC O25682; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08086.1}; GN OrderedLocusNames=HP_1039 {ECO:0000313|EMBL:AAD08086.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08086.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08086.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08086.1; -; Genomic_DNA. DR PIR; G64649; G64649. DR RefSeq; NP_207829.1; NC_000915.1. DR RefSeq; WP_000910790.1; NC_018939.1. DR ProteinModelPortal; O25682; -. DR STRING; 85962.HP1039; -. DR PaxDb; O25682; -. DR EnsemblBacteria; AAD08086; AAD08086; HP_1039. DR GeneID; 899574; -. DR KEGG; heo:C694_05375; -. DR KEGG; hpy:HP1039; -. DR PATRIC; 20593415; VBIHelPyl33062_1088. DR eggNOG; ENOG41087XM; Bacteria. DR eggNOG; COG3307; LUCA. DR KO; K02847; -. DR OMA; VKIFWSG; -. DR OrthoDB; EOG683S5P; -. DR BioCyc; HPY:HP1039-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR007016; O-antigen_ligase-related. DR Pfam; PF04932; Wzy_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 50 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 99 117 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 129 146 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 183 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 190 208 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 214 230 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 237 257 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 346 369 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 381 399 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 405 422 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 429 AA; 49404 MW; 34921792532903E4 CRC64; MLKERLKAFF SADSVFTLIF ALFFLTSFKK PLTQVLLIVL MVFLFFRCYF QASLKETFAI NHLKTMSFKW LTLAFLGVFL SIFPNMFNMH DSQTFRYNLF ALNMSLTYAC GALCLLFASC LRIKLNQKIL FYSMAVANFI NGLLSLVQKI YFNMPRAQGF STVKEYVVLV SVSILGCYIY ALYSHNQKEK LFFTLSVFVG FLVVILSATR SATIAFVITF LILSCFILYA KKSLKPLGYM VVVSLILSAL YVGSNALEKK GAIEQSRVQN QSFEEDLKRY AKKDADSSIG WRLERWKEAL TVLRLRPFFG MAASEKCQRL EEILSLSKSY RAKDLILCYE RYDNQIIHIL ATRGIIGFLI WLFFLLVIVK IFWSGIKQNS LISFFILMTL AFYLIFGIGF DPFDFFITGS FFVGMIMMAV FLKKDKSAF // ID O25809_HELPY Unreviewed; 329 AA. AC O25809; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Ulcer associated adenine specific DNA methyltransferase {ECO:0000313|EMBL:AAD08252.1}; GN OrderedLocusNames=HP_1208 {ECO:0000313|EMBL:AAD08252.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08252.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08252.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08252.1; -; Genomic_DNA. DR PIR; H64670; H64670. DR RefSeq; NP_208000.1; NC_000915.1. DR RefSeq; WP_001106543.1; NC_018939.1. DR ProteinModelPortal; O25809; -. DR STRING; 85962.HP1208; -. DR REBASE; 56834; M.Hpy26695ORF6255P. DR PaxDb; O25809; -. DR EnsemblBacteria; AAD08252; AAD08252; HP_1208. DR GeneID; 899991; -. DR KEGG; heo:C694_06255; -. DR KEGG; hpy:HP1208; -. DR PATRIC; 20593787; VBIHelPyl33062_1266. DR eggNOG; ENOG4105DVP; Bacteria. DR eggNOG; COG3392; LUCA. DR KO; K07318; -. DR OMA; YNARQYG; -. DR OrthoDB; EOG696BSM; -. DR BioCyc; HPY:HP1208-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0009007; F:site-specific DNA-methyltransferase (adenine-specific) activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR012327; MeTrfase_D12. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02086; MethyltransfD12; 1. DR PRINTS; PR00505; D12N6MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD08252.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08252.1}. SQ SEQUENCE 329 AA; 37228 MW; 0C9BB4AF6E64312E CRC64; MNYIGSKYKL IPFIKENIHA VVGDNLSGTI FCDLFAGTGI VGRAFKKAVN KVISNDLEYY SFVLNQNYIG NIQEIPNQEE LINEINSVAL KKGFIYSYYS LGGSSRQYFS ETNAQKIDAM RLKIEELKLS QNIDNCTYYF LLASLLESAD KVANTASVYG AFLKRLKKSA QKELILKGAD FDLSLNANEV YQQDASELIG KISGDILYLD PPYNARQYGA NYHLLNTIAI YTPFAPKGKT GLPSYQKSSF CSRAKILNAF ENLIKTARFK YIFLSYNNEG LMSETEIGNI LKKYGTYSLM TKTYMRFKAD NKRTHKAAHT KECLHILIK // ID O24896_HELPY Unreviewed; 496 AA. AC O24896; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 108. DE SubName: Full=Proline permease (PutP) {ECO:0000313|EMBL:AAD07125.1}; GN OrderedLocusNames=HP_0055 {ECO:0000313|EMBL:AAD07125.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07125.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07125.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the sodium:solute symporter (SSF) CC (TC 2.A.21) family. {ECO:0000256|RuleBase:RU362091}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07125.1; -; Genomic_DNA. DR PIR; G64526; G64526. DR RefSeq; NP_206856.1; NC_000915.1. DR RefSeq; WP_000510269.1; NC_018939.1. DR ProteinModelPortal; O24896; -. DR STRING; 85962.HP0055; -. DR TCDB; 2.A.21.2.6; the solute:sodium symporter (sss) family. DR PaxDb; O24896; -. DR EnsemblBacteria; AAD07125; AAD07125; HP_0055. DR GeneID; 899191; -. DR KEGG; heo:C694_00260; -. DR KEGG; hpy:HP0055; -. DR PATRIC; 20591311; VBIHelPyl33062_0057. DR eggNOG; ENOG4108EUC; Bacteria. DR eggNOG; COG0591; LUCA. DR KO; K11928; -. DR OMA; VHKFDLS; -. DR OrthoDB; EOG6HB9QC; -. DR BioCyc; HPY:HP0055-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005298; F:proline:sodium symporter activity; IEA:InterPro. DR GO; GO:0031402; F:sodium ion binding; IEA:InterPro. DR InterPro; IPR011851; Na/Pro_symporter. DR InterPro; IPR001734; Na/solute_symporter. DR PANTHER; PTHR11819; PTHR11819; 1. DR Pfam; PF00474; SSF; 1. DR TIGRFAMs; TIGR02121; Na_Pro_sym; 1. DR TIGRFAMs; TIGR00813; sss; 1. DR PROSITE; PS50283; NA_SOLUT_SYMP_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 95 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 145 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 165 183 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 232 252 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 273 300 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 312 337 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 369 388 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 394 420 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 427 444 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 456 476 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 496 AA; 54081 MW; 2D3D117EFEAC46E3 CRC64; MGHVVLSTPI VTMFIVYSLL MLYIGFYFYK QNETTEDYFL GDRSMGPVIS ALSAGASDMS GWLLMGLPGA LYVGGLINSH IAIGLSLGAL INWVFVAKRL RIYTSVIANS ITISDYFETR FSDDKHILRL ISAFVILIFF IFYISSGLVS GAKLFEATFG IQYTYALSIG TLIIVSYTFL GGYKAVCWTD LIQGLLMMSA LIVVPIVMII HLGGIGEGIK IIREIKPENL SFLQGSSVVA IISSLAWGLG YFGQPHILVR FMSIRSIRDV PKATTIGISW MVISLIGACV MGLLGVAYVH KFDLSLEDPE KIFIVMSQLL FNPWITGILL SAILAAVMST ASSQLLVSSS TIAEDFYATI FNKDAPQKLV MAISRLSVLG VACIAFFIST DRNASILSIV SYAWAGFGAS FGSVILFSLF WSRMTRIGAI AGMLSGASTV ILYDKFGKSF LDIYEIVPGF IVASVAIVVF SLFSSVRTGT KEAFETMLKE IESLKH // ID O25734_HELPY Unreviewed; 435 AA. AC O25734; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08159.1}; GN OrderedLocusNames=HP_1106 {ECO:0000313|EMBL:AAD08159.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08159.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08159.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08159.1; -; Genomic_DNA. DR PIR; B64658; B64658. DR RefSeq; NP_207897.1; NC_000915.1. DR RefSeq; WP_000576584.1; NC_018939.1. DR ProteinModelPortal; O25734; -. DR PaxDb; O25734; -. DR EnsemblBacteria; AAD08159; AAD08159; HP_1106. DR GeneID; 899642; -. DR KEGG; heo:C694_05705; -. DR KEGG; hpy:HP1106; -. DR PATRIC; 20593551; VBIHelPyl33062_1155. DR OMA; HTHYSYF; -. DR OrthoDB; EOG654P09; -. DR BioCyc; HPY:HP1106-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 435 AA; 51103 MW; 7BF6C7725DDD9B3C CRC64; MIFLKKSLYA LLFSGFLTPP LMKAASFVYD LKFMSFNFNL VAPANNPYWN SLTKMQGRLM PQIGVQLDKR QALMFGAWFI QNLHTHYSYF PYSWGVTMYY QYIGKNLRFF LGIVPRSYQI GHYPLSAFKK LFWFIDPTFR GGAFQFKPAY DPNRWWNGWF EGVVDWYGGR NWNNQPKKKN YDFDQFLYFV SSEFQFLKGY LGLGGQLVVF HNASHHSMGD NYPYGGNSYL KPGDVTPQWP NGYPYFSQKN NPQGGEIGKY SNPTILDRVY YHAYLKADFK NLMPYMDNIF MTFGTQSSQT HYCVRYASEC KNARFYNSFG GEFYAQAQYK GFGIFNRYYF SNKPQMHFYA TYGQSLYTGL PWYRAPNFDM IGLYYVYKNK WVSVRADAFF NFLGGGDGYH LYGKGGKWIT TYQQFLTLTI DTRELIDFVK SKTSK // ID O25471_HELPY Unreviewed; 455 AA. AC O25471; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07835.1}; GN OrderedLocusNames=HP_0782 {ECO:0000313|EMBL:AAD07835.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07835.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07835.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07835.1; -; Genomic_DNA. DR PIR; F64617; F64617. DR RefSeq; NP_207575.1; NC_000915.1. DR RefSeq; WP_000911476.1; NC_018939.1. DR ProteinModelPortal; O25471; -. DR PaxDb; O25471; -. DR EnsemblBacteria; AAD07835; AAD07835; HP_0782. DR GeneID; 899344; -. DR KEGG; heo:C694_04015; -. DR KEGG; hpy:HP0782; -. DR PATRIC; 20592853; VBIHelPyl33062_0815. DR OMA; KIHIDSN; -. DR OrthoDB; EOG6DC6F7; -. DR BioCyc; HPY:HP0782-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 455 AA; 51983 MW; E7398E5C5C0248C1 CRC64; MLKFQKLPLL FVSILYNQSP LLAFDYKFSG VAESFSKVGF NHSKLNSKEG IFPTATFVTA TIKLQVDSNL LPKNIEKHSL KIGVGGILGA LAYDSTKTLI DQATHQVYGS ELFFFIGRWW GYLGDAPWKD SRIESDAHTR NYVLYNSYLF YSYGDKFHLK LGRYLSNMDF MSGYTQGFEL DYKINSKIAL KWFSSFGRAL AAGQWIRDWY APIVTEDGRK DVDYGIHAVQ LYFSNKHVQA TPFFYFSPKT YEAPGIKIHI DSNPKFRGLG LRSQTLINVI FPVYAKDLYD VVWRNSKIGE WGASLLIHQR FDCNEFNFGF GYYQNFGNAN ARIGWYGNPI PFDIRSNSIY GLVFSNAVTA DSVSGYVFGG GVYRGFLWGI LGRYTYATRA SERSINLHLG YRWGSFASVD VNLQYYEVSM HTGYKVNDLT SPFNKAFKAN TQDRSNLMVS VKFFF // ID O26003_HELPY Unreviewed; 231 AA. AC O26003; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08526.1}; GN OrderedLocusNames=HP_1467 {ECO:0000313|EMBL:AAD08526.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08526.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08526.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08526.1; -; Genomic_DNA. DR PIR; C64703; C64703. DR RefSeq; NP_208258.1; NC_000915.1. DR RefSeq; WP_000473425.1; NC_018939.1. DR ProteinModelPortal; O26003; -. DR STRING; 85962.HP1467; -. DR PaxDb; O26003; -. DR EnsemblBacteria; AAD08526; AAD08526; HP_1467. DR GeneID; 899826; -. DR KEGG; heo:C694_07595; -. DR KEGG; hpy:HP1467; -. DR PATRIC; 20594345; VBIHelPyl33062_1541. DR OMA; KVNYQSH; -. DR OrthoDB; EOG6DC6GV; -. DR BioCyc; HPY:HP1467-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 231 AA; 26222 MW; FDBD0E3E22A2719E CRC64; MFKKIIFFGV FLMGGFVIPP LDAMPILHNK TPKKNYQEAH EKLYRSIINR QKLTRKKSGW YFLGGFGAVE ATKDYQGQEM KDWIATLNLK TGVQSFFKKY IGIRGVFAWD LGSGKVNYQS HKDPTNSFFT MLAVGLDVIM EFPLGSYKHY LGAFGGARGA LVVYTDKQNF KFFKHSVVSG GLAINGGVML TLFLRHRIEL GFKILPTARL LSSSKRFETS PLFYAAYSYK F // ID O24894_HELPY Unreviewed; 419 AA. AC O24894; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07128.1}; GN OrderedLocusNames=HP_0053 {ECO:0000313|EMBL:AAD07128.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07128.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07128.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07128.1; -; Genomic_DNA. DR PIR; E64526; E64526. DR RefSeq; WP_000664224.1; NC_018939.1. DR RefSeq; YP_009112933.1; NC_000915.1. DR ProteinModelPortal; O24894; -. DR STRING; 85962.HP0053; -. DR REBASE; 56867; Hpy26695ORF255P. DR PaxDb; O24894; -. DR EnsemblBacteria; AAD07128; AAD07128; HP_0053. DR GeneID; 899184; -. DR KEGG; heo:C694_00250; -. DR KEGG; hpy:HP0053; -. DR PATRIC; 20591307; VBIHelPyl33062_0055. DR eggNOG; ENOG4105F19; Bacteria. DR eggNOG; ENOG410XRT5; LUCA. DR OMA; RWIDQKC; -. DR OrthoDB; EOG6KHFW0; -. DR BioCyc; HPY:HP0053-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 267 291 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 419 AA; 49557 MW; 51550D8944F92EF1 CRC64; MKEQSMIDFL KLRDYDIRKT QNARWIDQKC TPDVLSLVAD CILEFTQCNI GKSFSIRDIW DSPYTNENVK MIFSKPDLNS DFSMHEYDKF FSQPIKLLAY SGILFETKTG NRNIYTIQNI ELLEYLMQRE TNALKFLILY IQKVLMDSGI YPLFDNFLQK QDTESFKQLK DGFTHFTINN TAINNATECF RIFTKIINPL AFYYGKKGTR KGYLSNTIIT KDELNYNRIN WRDIGKDKNT TRQEYDLINS KRIANSNYLI SKAKKVVKRY NDRFNNSLSE VKQEKEESQA TQIHHIFPIQ DFPIIANYIE NLIALTPNQH FIYAHPNNQT RLIDKDFQYI CLLAKTTTIL NDTQGVYDWN DYIVVLNMGL KTTIFSQVKN EWELLKVIDA FYFDFNKSKD PSWSYLLDKN DLRAFKLKF // ID O25051_HELPY Unreviewed; 179 AA. AC O25051; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07348.1}; GN OrderedLocusNames=HP_0273 {ECO:0000313|EMBL:AAD07348.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07348.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07348.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07348.1; -; Genomic_DNA. DR PIR; A64554; A64554. DR RefSeq; NP_207071.1; NC_000915.1. DR RefSeq; WP_001863038.1; NC_018939.1. DR ProteinModelPortal; O25051; -. DR STRING; 85962.HP0273; -. DR PaxDb; O25051; -. DR EnsemblBacteria; AAD07348; AAD07348; HP_0273. DR GeneID; 898771; -. DR KEGG; heo:C694_01380; -. DR KEGG; hpy:HP0273; -. DR PATRIC; 20591773; VBIHelPyl33062_0284. DR OMA; TNYRNQK; -. DR OrthoDB; EOG6B628Z; -. DR BioCyc; HPY:HP0273-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 43 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 179 AA; 21002 MW; 3B8E759C0DE0399F CRC64; MKPLHFSHLD REQSGDVGFI IKNLVFLGVF SLLGWLNTEY FLWPSMLELK KILLEENRKK SVLEYAQRHF ETALTNYRNQ KETSESLLKI FNDEESKRIL EKILKKCFDA YKIKPLLSQN SLQKTQFFIM ARASELEKTY LFFTLINKYL PSAQSQLPLK ISKDDEGLLV QFGVSIDLQ // ID O25409_HELPY Unreviewed; 36 AA. AC O25409; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07760.1}; GN OrderedLocusNames=HP_0704 {ECO:0000313|EMBL:AAD07760.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07760.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07760.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07760.1; -; Genomic_DNA. DR PIR; H64607; H64607. DR ProteinModelPortal; O25409; -. DR PaxDb; O25409; -. DR PRIDE; O25409; -. DR EnsemblBacteria; AAD07760; AAD07760; HP_0704. DR BioCyc; HPY:HP0704-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 36 AA; 4045 MW; E65283E3301F6B6C CRC64; MVSNSLNFFS NSHAIDFKGM ASLLTLIYII NGYCCR // ID O25509_HELPY Unreviewed; 205 AA. AC O25509; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07895.1}; GN OrderedLocusNames=HP_0838 {ECO:0000313|EMBL:AAD07895.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07895.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07895.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07895.1; -; Genomic_DNA. DR PIR; F64624; F64624. DR RefSeq; NP_207631.1; NC_000915.1. DR RefSeq; WP_001268701.1; NC_018939.1. DR ProteinModelPortal; O25509; -. DR DIP; DIP-3536N; -. DR IntAct; O25509; 1. DR MINT; MINT-174256; -. DR STRING; 85962.HP0838; -. DR PaxDb; O25509; -. DR EnsemblBacteria; AAD07895; AAD07895; HP_0838. DR GeneID; 900322; -. DR KEGG; heo:C694_04295; -. DR KEGG; hpy:HP0838; -. DR PATRIC; 20592969; VBIHelPyl33062_0872. DR eggNOG; ENOG4106B5A; Bacteria. DR eggNOG; ENOG410XXN6; LUCA. DR OMA; NIEITLY; -. DR OrthoDB; EOG6K400B; -. DR BioCyc; HPY:HP0838-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 205 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157808. SQ SEQUENCE 205 AA; 24340 MW; B0898F908BA9DA08 CRC64; MRYFRSAFLL FFMTLFFASC SKHPFSKQTP KTREQIRQEE ARKKREETLN ALRQFRLIYI NTPVFRFYDY GTIKTDKDHN IEVTLYKLSQ RVGDIYMTKR NICFSQKCSA KWIAARDLFG KVSYGDLFDD IVLGRDIFKG LGKRHLTPEY VIQRFQKSGE IILYERKNGL ISFQNLTQKI AIRIEPYEPS LQDLEDNENA DSELQ // ID O25945_HELPY Unreviewed; 242 AA. AC O25945; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Outer membrane protein (Omp30) {ECO:0000313|EMBL:AAD08440.1}; GN OrderedLocusNames=HP_1395 {ECO:0000313|EMBL:AAD08440.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08440.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08440.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08440.1; -; Genomic_DNA. DR PIR; C64694; C64694. DR RefSeq; NP_208186.1; NC_000915.1. DR RefSeq; WP_000719289.1; NC_018939.1. DR ProteinModelPortal; O25945; -. DR STRING; 85962.HP1395; -. DR PaxDb; O25945; -. DR EnsemblBacteria; AAD08440; AAD08440; HP_1395. DR GeneID; 899901; -. DR KEGG; heo:C694_07210; -. DR KEGG; hpy:HP1395; -. DR PATRIC; 20594179; VBIHelPyl33062_1460. DR OMA; YSWYVNY; -. DR OrthoDB; EOG6384HF; -. DR BioCyc; HPY:HP1395-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 242 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157825. SQ SEQUENCE 242 AA; 26762 MW; 6625F2D02B793B32 CRC64; MKKIFSQSLL ALVVSVNALL AMDGNGVFIG AGYLQGQAQM HADINSQKQA TSATIKGFDA LLGYQFFFGK YFGLRLYGFF DYAHANSIRL KNPNYNNEVV QLAGQVLGKQ EINRLTSLAD PKTFEPNMLT YGGAMDVMVN VINNGIMSLG AFGGVQLAGN SWLMATPSFE GILVEQALVS KKATSFQFLF NVGARLRILK HSSIEAGVKF PMLKKNPYIT AKNLDIGFRR VYSWYVNYVF TF // ID O25881_HELPY Unreviewed; 201 AA. AC O25881; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08374.1}; GN OrderedLocusNames=HP_1322 {ECO:0000313|EMBL:AAD08374.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08374.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08374.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08374.1; -; Genomic_DNA. DR PIR; B64685; B64685. DR RefSeq; NP_208114.1; NC_000915.1. DR RefSeq; WP_010875611.1; NC_000915.1. DR ProteinModelPortal; O25881; -. DR DIP; DIP-3707N; -. DR IntAct; O25881; 3. DR MINT; MINT-166027; -. DR STRING; 85962.HP1322; -. DR PaxDb; O25881; -. DR PRIDE; O25881; -. DR EnsemblBacteria; AAD08374; AAD08374; HP_1322. DR GeneID; 898881; -. DR KEGG; hpy:HP1322; -. DR PATRIC; 20594025; VBIHelPyl33062_1383. DR OMA; MVQFPFI; -. DR OrthoDB; EOG6NGVRG; -. DR BioCyc; HPY:HP1322-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 33 {ECO:0000256|SAM:SignalP}. FT CHAIN 34 201 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157820. SQ SEQUENCE 201 AA; 22968 MW; BC40A771F9BE33E9 CRC64; MIFYRKEATM NALKKLSFCA LLSLGLFAQT AHAKHLKGTI NYPDWLEINF FDEKNPPNQY VGSASISGKR NDFYANYIPY DDQLPPEQNA EKIALLRARI NAYSTLESIL LTKMHNRIVK VLQVKNNVIS HLFGLVDFLT SKSILAKRFV DTTNHRVYVM VQFPFIQPED LIAYFKAKRI DLSSASATHL SALLNKALFH L // ID O25230_HELPY Unreviewed; 528 AA. AC O25230; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07554.1}; GN OrderedLocusNames=HP_0486 {ECO:0000313|EMBL:AAD07554.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07554.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07554.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07554.1; -; Genomic_DNA. DR PIR; F64580; F64580. DR RefSeq; NP_207283.1; NC_000915.1. DR RefSeq; WP_000768579.1; NC_018939.1. DR ProteinModelPortal; O25230; -. DR DIP; DIP-3318N; -. DR IntAct; O25230; 2. DR MINT; MINT-181327; -. DR STRING; 85962.HP0486; -. DR PaxDb; O25230; -. DR EnsemblBacteria; AAD07554; AAD07554; HP_0486. DR GeneID; 900059; -. DR KEGG; heo:C694_02500; -. DR KEGG; hpy:HP0486; -. DR PATRIC; 20592247; VBIHelPyl33062_0512. DR OMA; GWTVNLG; -. DR OrthoDB; EOG6K6V4P; -. DR BioCyc; HPY:HP0486-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 29 {ECO:0000256|SAM:SignalP}. FT CHAIN 30 528 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157800. SQ SEQUENCE 528 AA; 59417 MW; ED37A2D668123430 CRC64; MKLKKRKVAA ALLKRFTLPL LFTTGSLGAV TYEVHGDFIN FAKVGFNHSP INPVKGIYPT ETFVNLTGKL EGSVHLGRGW TVNLGGVLGG QAYDGTKYDR WAKDFTPPSY WDKTSCGTDS MSLCMNATKM WQQSGPGGVI NPRGIGWEYM GEWNGLFPNY YPANAYLPGG SRRYQVYKAN LTYDSDRVHM VMGRFDITEQ EQMDWIYQLF QGFYGTFKLT KNMKFLLFSG WGRGIADGQW LFPIYREKPW GVHKAGIIYR PTKNLMIHPY VYLIPMVGTL PGAKIEYDTN PEFSGRGIRN RTTFYALYDY RWNNAEYGRY APARYNTWDP FLDNGKWRGL QGPGGATLLL RHHIDINNYF VVGGAYLNIG NPNMNLGTWG NPVAVDGIEQ WVGSIYSLGF AGIDNITDAD AFTEYVKGGG KHGKFSWSVY QRFTTAPRAL EYGIGMYLDY QFSKHVKAGL KLVWLEFQIR AGYNPGTGFL GPNGQPLNLN TGLFESSAFA QGPQNMGGIA KSITQDRSHL MTHISYSF // ID O25061_HELPY Unreviewed; 172 AA. AC O25061; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07359.1}; GN OrderedLocusNames=HP_0287 {ECO:0000313|EMBL:AAD07359.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07359.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07359.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07359.1; -; Genomic_DNA. DR PIR; G64555; G64555. DR RefSeq; NP_207085.1; NC_000915.1. DR RefSeq; WP_001210594.1; NC_018939.1. DR ProteinModelPortal; O25061; -. DR IntAct; O25061; 22. DR MINT; MINT-4063914; -. DR STRING; 85962.HP0287; -. DR PaxDb; O25061; -. DR EnsemblBacteria; AAD07359; AAD07359; HP_0287. DR GeneID; 899196; -. DR KEGG; heo:C694_01450; -. DR KEGG; hpy:HP0287; -. DR PATRIC; 20591801; VBIHelPyl33062_0298. DR eggNOG; ENOG4105I9H; Bacteria. DR eggNOG; ENOG4111RDW; LUCA. DR OMA; EVFIGLK; -. DR OrthoDB; EOG69D3GT; -. DR BioCyc; HPY:HP0287-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR SUPFAM; SSF53474; SSF53474; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 172 AA; 20110 MW; B0C8F44AA739566C CRC64; MRFFSGFGFV NESVLFEEWL LKGAYDVSGF SMGAIKAIEY AYNEILQQRR INSLLLFSPC MLAHKSLAFK RLQLSSFQKD PQSYMDNFYQ EVGLSAQLER FKKEGSLEEL EFLLNYKYSD SIIRLLLEKG VKIEVFIGLK DKITDIQALL EFFMPLVQVW QFKDCNHLLQ KS // ID O25904_HELPY Unreviewed; 387 AA. AC O25904; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08406.1}; GN OrderedLocusNames=HP_1349 {ECO:0000313|EMBL:AAD08406.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08406.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08406.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08406.1; -; Genomic_DNA. DR PIR; E64688; E64688. DR RefSeq; NP_208141.1; NC_000915.1. DR RefSeq; WP_000506091.1; NC_018939.1. DR ProteinModelPortal; O25904; -. DR DIP; DIP-3519N; -. DR IntAct; O25904; 2. DR MINT; MINT-174374; -. DR STRING; 85962.HP1349; -. DR PaxDb; O25904; -. DR EnsemblBacteria; AAD08406; AAD08406; HP_1349. DR GeneID; 900353; -. DR KEGG; heo:C694_06960; -. DR KEGG; hpy:HP1349; -. DR PATRIC; 20594083; VBIHelPyl33062_1412. DR OMA; TQNSTIL; -. DR OrthoDB; EOG6GR361; -. DR BioCyc; HPY:HP1349-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 36 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 281 302 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 308 327 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 387 AA; 44395 MW; BC22B1099BD1A1C2 CRC64; MGFLFEKSLM SFFAHPIKIL KIISLILSFL VSFLVAENAH EPEEIKAKVA YVKIPQLEDL ENNPVYIGQI IGVTYDLLLF DAEFLEAKIK DGLDKTQIEL LNKMPKWKKV EKELFRATYY YKIKGIKAII PSLEVSAFSN KDKYIDHSIA PKVTLQVTDL SKNPRYANVM AKDLQVLQYK TKDYDDKNNI LVMEIAFKEA TWEDFHIKEA IKQGFDNASL NQIKAKEGSV FYYCVLPKTI QNLSFDYFSL SNKQFKTLSF STIPTQDTTG IQSDLIPKNN FLVFSNVALL ALCVFFLVLF FIFGRKLIFL GLGILCLGFV LYHLLFTQKS ALLLAHKKIR ILPTQNSTIL GLSKNEMPIK ILGSHDDYYK ILTPHEQIGW VKKDEVK // ID O26094_HELPY Unreviewed; 206 AA. AC O26094; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Riboflavin synthase alpha subunit (RibC) {ECO:0000313|EMBL:AAD08614.1}; GN OrderedLocusNames=HP_1574 {ECO:0000313|EMBL:AAD08614.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08614.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08614.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08614.1; -; Genomic_DNA. DR PIR; F64716; F64716. DR RefSeq; NP_208365.1; NC_000915.1. DR RefSeq; WP_000491029.1; NC_018939.1. DR ProteinModelPortal; O26094; -. DR STRING; 85962.HP1574; -. DR PaxDb; O26094; -. DR EnsemblBacteria; AAD08614; AAD08614; HP_1574. DR GeneID; 899717; -. DR KEGG; heo:C694_08155; -. DR KEGG; hpy:HP1574; -. DR PATRIC; 20594575; VBIHelPyl33062_1655. DR eggNOG; ENOG4108R6K; Bacteria. DR eggNOG; COG0307; LUCA. DR KO; K00793; -. DR OMA; DLVHIEP; -. DR OrthoDB; EOG6VMTQH; -. DR BioCyc; HPY:HP1574-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0004746; F:riboflavin synthase activity; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 2.40.30.20; -; 2. DR InterPro; IPR023366; ATPase_asu-like. DR InterPro; IPR001783; Lumazine-bd. DR InterPro; IPR026017; Lumazine-bd_dom. DR InterPro; IPR017938; Riboflavin_synthase-like_b-brl. DR PANTHER; PTHR21098; PTHR21098; 1. DR Pfam; PF00677; Lum_binding; 2. DR PIRSF; PIRSF000498; Riboflavin_syn_A; 1. DR SUPFAM; SSF63380; SSF63380; 2. DR TIGRFAMs; TIGR00187; ribE; 1. DR PROSITE; PS51177; LUMAZINE_BIND; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 87 Lumazine-binding. FT {ECO:0000259|PROSITE:PS51177}. FT DOMAIN 88 184 Lumazine-binding. FT {ECO:0000259|PROSITE:PS51177}. SQ SEQUENCE 206 AA; 22807 MW; F05133545018391C CRC64; MFSGLIHQIA KVKSFHNNIL NIESDLNPKL GDSIAINGAC LTAIESSKTH FSVELSQKTQ NSVALENYKD LVHIEPALKA DASLDGHFVQ GHIDAIGVIE KIIHNANQVD FFISASEETL LLCVEQGSIA VDGVSLTLSK VEEKGFWLTI IPYTLENTLF KAYKLKRRVN IETDMLVRSV ASILKKTKGF EKNFSWNEAD ALTLGY // ID O25612_HELPY Unreviewed; 254 AA. AC O25612; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08008.1}; GN OrderedLocusNames=HP_0958 {ECO:0000313|EMBL:AAD08008.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08008.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08008.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25998:HP_1462; NbExp=3; IntAct=EBI-7600058, EBI-7601350; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08008.1; -; Genomic_DNA. DR PIR; F64639; F64639. DR RefSeq; NP_207750.1; NC_000915.1. DR RefSeq; WP_001091835.1; NC_018939.1. DR ProteinModelPortal; O25612; -. DR DIP; DIP-3603N; -. DR IntAct; O25612; 10. DR MINT; MINT-162426; -. DR STRING; 85962.HP0958; -. DR PaxDb; O25612; -. DR EnsemblBacteria; AAD08008; AAD08008; HP_0958. DR GeneID; 899491; -. DR KEGG; heo:C694_04935; -. DR KEGG; hpy:HP0958; -. DR PATRIC; 20593229; VBIHelPyl33062_0996. DR eggNOG; ENOG4107XHT; Bacteria. DR eggNOG; COG1579; LUCA. DR KO; K07164; -. DR OMA; SFFTIPP; -. DR OrthoDB; EOG6P8TT4; -. DR BioCyc; HPY:HP0958-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003743; Zf-RING_7. DR Pfam; PF02591; zf-RING_7; 1. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 198 230 zf-RING_7. {ECO:0000259|Pfam:PF02591}. FT COILED 25 87 {ECO:0000256|SAM:Coils}. FT COILED 90 159 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 254 AA; 29692 MW; C640CEED79C37397 CRC64; MNTHLKQLIE ISHLDKEIDS LEPLIREKRK DLDKALNDKE AKNKAILNLE EEKLALKLQV SKNEQTLQDT NTKIASIQKK MSEIKSEREL RSLNIEEDIA KERSNQANRE IENLQNEIKH KSEKQEDLKK EMLELEKLVQ QLESLVENEV KNIKETQQII FKKKEELVEK TEPKIYSFYE RIRRWAKNTS IVTIKKQACG GCFIRLNDKI YTEVLTSGDM ITCPYCGRIL YAEGAYENSA QPPKESQEES QELV // ID O25347_HELPY Unreviewed; 194 AA. AC O25347; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Modulator of drug activity (Mda66) {ECO:0000313|EMBL:AAD07690.1}; GN OrderedLocusNames=HP_0630 {ECO:0000313|EMBL:AAD07690.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07690.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07690.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07690.1; -; Genomic_DNA. DR PIR; F64598; F64598. DR RefSeq; NP_207424.1; NC_000915.1. DR RefSeq; WP_000756697.1; NC_018939.1. DR ProteinModelPortal; O25347; -. DR SMR; O25347; 4-193. DR IntAct; O25347; 1. DR STRING; 85962.HP0630; -. DR PaxDb; O25347; -. DR EnsemblBacteria; AAD07690; AAD07690; HP_0630. DR GeneID; 898924; -. DR KEGG; heo:C694_03260; -. DR KEGG; hpy:HP0630; -. DR PATRIC; 20592543; VBIHelPyl33062_0660. DR eggNOG; ENOG4105NF4; Bacteria. DR eggNOG; COG2249; LUCA. DR KO; K03923; -. DR OMA; PTFICND; -. DR OrthoDB; EOG6ZWJFM; -. DR BioCyc; HPY:HP0630-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR003680; Flavodoxin_fold. DR InterPro; IPR029039; Flavoprotein-like_dom. DR Pfam; PF02525; Flavodoxin_2; 1. DR SUPFAM; SSF52218; SSF52218; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 187 Flavodoxin_2. {ECO:0000259|Pfam:PF02525}. SQ SEQUENCE 194 AA; 21605 MW; 7241795996E8EFBC CRC64; MKKVLIINGA KAFGSSGGKL NETLTDHAKK TLESLGLEVD TTIVDKGYEH AQEVEKVFSA DATIWQMPGW WMGEPWIVKK YIDEVFSVGH GKLYASDGRS SQNPTKNYGK GGLMQGKKYM LSLTWNAPIE AFNDPSEFFE GVGVDVVYLH LHKAFQFLGL SALPTFICND VVKNPQVEQY LNSLTTHLRQ AFGK // ID O25574_HELPY Unreviewed; 249 AA. AC O25574; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Iron-regulated outer membrane protein (FrpB) {ECO:0000313|EMBL:AAD07962.1}; GN OrderedLocusNames=HP_0916 {ECO:0000313|EMBL:AAD07962.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07962.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07962.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07962.1; -; Genomic_DNA. DR PIR; D64634; D64634. DR RefSeq; NP_207708.1; NC_000915.1. DR RefSeq; WP_001863226.1; NC_018939.1. DR ProteinModelPortal; O25574; -. DR STRING; 85962.HP0916; -. DR PaxDb; O25574; -. DR EnsemblBacteria; AAD07962; AAD07962; HP_0916. DR GeneID; 899445; -. DR KEGG; heo:C694_04715; -. DR KEGG; hpy:HP0916; -. DR PATRIC; 20593135; VBIHelPyl33062_0953. DR eggNOG; COG1629; LUCA. DR KO; K02014; -. DR OMA; KKENAQH; -. DR OrthoDB; EOG6JQGXW; -. DR BioCyc; HPY:HP0916-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR InterPro; IPR012910; Plug_dom. DR Pfam; PF07715; Plug; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 65 161 Plug. {ECO:0000259|Pfam:PF07715}. FT COILED 24 46 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 249 AA; 27827 MW; 17670E97DE2FE6F5 CRC64; MNDKRFRKYC SFSIFLSLLG TFELEAKEEE EKEERKTERK KEKNAQHTLG KVTTQAAKIF NYNNQTTISS KELERRQANQ ISDMFRRNPN INVGGGAVIA QKIYVRGIED RLARVTVDGA AQMGASYGHQ GNTIIDPGML KSVVVTKGAA QASAGPMALI GAIKMETKSA SDFIPKGKDY AISGAATFLT NFGDRETVMG AYRHNHFDAL LYYTHQNIFY YRDGDNATKD LFRPKAENKV TEVLASKTM // ID O25191_HELPY Unreviewed; 100 AA. AC O25191; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07510.1}; GN OrderedLocusNames=HP_0443 {ECO:0000313|EMBL:AAD07510.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07510.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07510.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07510.1; -; Genomic_DNA. DR PIR; C64575; C64575. DR RefSeq; NP_207241.1; NC_000915.1. DR RefSeq; WP_000850076.1; NC_000915.1. DR ProteinModelPortal; O25191; -. DR STRING; 85962.HP0443; -. DR PaxDb; O25191; -. DR EnsemblBacteria; AAD07510; AAD07510; HP_0443. DR GeneID; 900283; -. DR KEGG; heo:C694_02250; -. DR KEGG; hpy:HP0443; -. DR PATRIC; 20592145; VBIHelPyl33062_0461. DR OMA; EIGWKCV; -. DR OrthoDB; EOG6R2H2G; -. DR BioCyc; HPY:HP0443-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT SIGNAL 1 30 {ECO:0000256|SAM:SignalP}. FT CHAIN 31 100 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157799. FT TRANSMEM 45 66 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 75 92 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 100 AA; 11430 MW; 47F46BD4BCDBD055 CRC64; MKTKHKGIRM FKQIRRMMSL AILMPSFLLA APDYKQKFTQ ILDFISNDFI KAIGGLIIVG TCIYAYKNWD RLGEIGWKCV GIIIITAAIS NAKTLSQWLF // ID O24920_HELPY Unreviewed; 155 AA. AC O24920; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07164.1}; GN OrderedLocusNames=HP_0094 {ECO:0000313|EMBL:AAD07164.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07164.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07164.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07164.1; -; Genomic_DNA. DR PIR; F64531; F64531. DR RefSeq; WP_000874844.1; NC_018939.1. DR ProteinModelPortal; O24920; -. DR STRING; 85962.HP0094; -. DR CAZy; GT11; Glycosyltransferase Family 11. DR PaxDb; O24920; -. DR EnsemblBacteria; AAD07164; AAD07164; HP_0094. DR KEGG; heo:C694_00460; -. DR PATRIC; 20591399; VBIHelPyl33062_0099. DR OMA; GISSHIK; -. DR OrthoDB; EOG6PCPZX; -. DR BioCyc; HPY:HP0094-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 155 AA; 17935 MW; B53A63F499C6556B CRC64; MAFKVVQICG GLGNQMFQYA FAKSLQKHSN TPVLLDITSF DWSDRKMQLE LFPIDLPYAS AKEIAIAKMQ HLPKLVRDAL KCMGFDRVSQ EIVFEYEPKL LKPSRLTYFF GYFQDPRYFD AISPLIKQTF TLPPPPPKII RIIIKKRKNI SASFL // ID O25557_HELPY Unreviewed; 208 AA. AC O25557; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07950.1}; GN OrderedLocusNames=HP_0897 {ECO:0000313|EMBL:AAD07950.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07950.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07950.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07950.1; -; Genomic_DNA. DR PIR; A64632; A64632. DR RefSeq; NP_207690.1; NC_000915.1. DR RefSeq; WP_010875559.1; NC_000915.1. DR ProteinModelPortal; O25557; -. DR DIP; DIP-3395N; -. DR IntAct; O25557; 3. DR MINT; MINT-161421; -. DR STRING; 85962.HP0897; -. DR PaxDb; O25557; -. DR PRIDE; O25557; -. DR EnsemblBacteria; AAD07950; AAD07950; HP_0897. DR GeneID; 899427; -. DR KEGG; hpy:HP0897; -. DR OMA; KIYFTHP; -. DR OrthoDB; EOG6XM7BT; -. DR BioCyc; HPY:HP0897-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 208 AA; 24373 MW; 8F627E94F3FFC779 CRC64; MPGPKPGALP LGDTPKTKES IIQKLFKKVK LKRYNFIMEN GFDPIIYKRY LKKKETFLLF KKIAQASAFK NLKLQLKRRE IINRYVSQAL GDLKKGFRYA KVEHQILKIY FTHPSYLKAF KIEEAYYTNH LKAHLKETQK TLKALDYPFD FKTIQASVKK RAYQKPVVKK EKPPKSVNVN CEGLSDFTKK QFLKLKRACN DNTLRTPP // ID O25125_HELPY Unreviewed; 511 AA. AC O25125; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07427.1}; GN OrderedLocusNames=HP_0358 {ECO:0000313|EMBL:AAD07427.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07427.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07427.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07427.1; -; Genomic_DNA. DR PIR; F64564; F64564. DR RefSeq; NP_207156.1; NC_000915.1. DR RefSeq; WP_000735668.1; NC_018939.1. DR ProteinModelPortal; O25125; -. DR PaxDb; O25125; -. DR EnsemblBacteria; AAD07427; AAD07427; HP_0358. DR GeneID; 899048; -. DR KEGG; heo:C694_01815; -. DR KEGG; hpy:HP0358; -. DR PATRIC; 20591949; VBIHelPyl33062_0371. DR OMA; ILFTEWG; -. DR OrthoDB; EOG6B35XB; -. DR BioCyc; HPY:HP0358-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 511 AA; 57847 MW; 822B1FC61657958E CRC64; MKKLLYTILA LLLIGLLTIY LILFTEWGNK IIASYIEKKI NPNEHYLSVK TFKLRFNSLD FKAQANDDST LILKGDFSLL KQSVNLNYHI DIKDLRSFKE WIPYPLRGAV ITSGNIKGHR KALMIQGVSN VAQSHTAYNA LLDDFKLSRL NLNAQDANLE DLLYLINRPA YANAKVSLQA DFNSLKPLEG HLILTANNAL INNALINQIF HLNLKDTLVF SLSHSSDFKG NKAISDTTLT SPLANFKALK SEYLFSILKL NAPYTLEIPN LAKLYNITNH PLKGSLTLKG AIEQSPKLLK VSGHSNLLDG ALDFTLLNKD LKGRFSNIST LKALDLFHYP KFFQSVADAN LDYDLIAKQG VLKARLKNAR FLKNAFSDFL YSISKFDITK EIYNDANLVS QINQQRLLSD LSLKSPKTQL KIHNGLLDLN TKQMNMLMDA EILKFIFKMK LQGNMHQPKF SLILNEKAIQ QNLQQGLKEI LKNDTLKKGL DHLLKDDKLK EKLEKGLKGL F // ID O25123_HELPY Unreviewed; 252 AA. AC O25123; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07426.1}; GN OrderedLocusNames=HP_0356 {ECO:0000313|EMBL:AAD07426.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07426.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07426.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07426.1; -; Genomic_DNA. DR PIR; D64564; D64564. DR RefSeq; NP_207154.1; NC_000915.1. DR RefSeq; WP_001052085.1; NC_018939.1. DR ProteinModelPortal; O25123; -. DR DIP; DIP-3277N; -. DR IntAct; O25123; 1. DR MINT; MINT-174466; -. DR STRING; 85962.HP0356; -. DR PaxDb; O25123; -. DR DNASU; 899215; -. DR EnsemblBacteria; AAD07426; AAD07426; HP_0356. DR GeneID; 899215; -. DR KEGG; heo:C694_01805; -. DR KEGG; hpy:HP0356; -. DR PATRIC; 20591945; VBIHelPyl33062_0369. DR OMA; FGDGYDF; -. DR OrthoDB; EOG6SJJHD; -. DR BioCyc; HPY:HP0356-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR024975; DUF3883. DR Pfam; PF13020; DUF3883; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 136 220 DUF3883. {ECO:0000259|Pfam:PF13020}. SQ SEQUENCE 252 AA; 29760 MW; F9622DF20FFFA847 CRC64; MAKHKNYEIL NLIGYALAKF DNDFIKEFGF STKNAFFEYC VQIGLADTTG VIKNRMDLFD YFFPNKRKGW WQKGDAYIHR KLWIDSLFKD EDAKGFSHIV KWFLQEQYGV KDLGITPNAY LKTRYKSMQE TGLEAELYFL NHYKNIKIFS CGHLKDMRLF GDGYDFYIQT NKQAFLVEVK GIREKQGTLR LTQKEYEQAQ TYSHDYVLVV VLNLSEKPHL LSIANPLKHL EFKACERKQK SILEYHLIGQ IK // ID O25232_HELPY Unreviewed; 295 AA. AC O25232; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07557.1}; GN OrderedLocusNames=HP_0489 {ECO:0000313|EMBL:AAD07557.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07557.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07557.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07557.1; -; Genomic_DNA. DR PIR; A64581; A64581. DR RefSeq; NP_207286.1; NC_000915.1. DR RefSeq; WP_010875492.1; NC_018939.1. DR ProteinModelPortal; O25232; -. DR DIP; DIP-3741N; -. DR IntAct; O25232; 2. DR MINT; MINT-177815; -. DR STRING; 85962.HP0489; -. DR PaxDb; O25232; -. DR EnsemblBacteria; AAD07557; AAD07557; HP_0489. DR GeneID; 899255; -. DR KEGG; heo:C694_02515; -. DR KEGG; hpy:HP0489; -. DR PATRIC; 20592253; VBIHelPyl33062_0515. DR OMA; RESATNQ; -. DR OrthoDB; EOG6CVV9F; -. DR BioCyc; HPY:HP0489-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 115 142 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 295 AA; 33226 MW; 0ECE9E1BB767A796 CRC64; MINYPNLPNS ALEITEQPEV KEITNELLKQ LQNALNSNSL FSEQVELSLK GIVRILEVLL SLDFFKNANE IDSSLRNSIE WLNNAGESLK TKMKEYEGFF SDFNTSMRTN EQEVSATLNA NTENIKSEIK KLENQLIETT TRLLTSYQIF LNNARDSANN QITANKTESL EALNQAKTSA NNEITANQTQ ALTNINEAKE NANNQITENK TQAITNINEA RESATTQITT NKQEVLNSIT QEKNQATSEI TEAKKSAFNE LLETLKPKFS GLFAGAYYIR NVIIFKADGR RKSRI // ID G5EB02_HELPY Unreviewed; 330 AA. AC G5EB02; DT 14-DEC-2011, integrated into UniProtKB/TrEMBL. DT 14-DEC-2011, sequence version 1. DT 13-APR-2016, entry version 37. DE SubName: Full=VirB11 homolog {ECO:0000313|EMBL:AAD07592.1}; GN OrderedLocusNames=HP_0525 {ECO:0000313|EMBL:AAD07592.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07592.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07592.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07592.1; -; Genomic_DNA. DR PIR; E64585; E64585. DR RefSeq; NP_207321.1; NC_000915.1. DR RefSeq; WP_000133885.1; NC_018939.1. DR ProteinModelPortal; G5EB02; -. DR SMR; G5EB02; 6-328. DR STRING; 85962.HP0525; -. DR PaxDb; G5EB02; -. DR EnsemblBacteria; AAD07592; AAD07592; HP_0525. DR GeneID; 900047; -. DR KEGG; heo:C694_02705; -. DR KEGG; hpy:HP0525; -. DR eggNOG; ENOG4108EUY; Bacteria. DR eggNOG; COG0630; LUCA. DR KO; K03196; -. DR OMA; PELTFEK; -. DR OrthoDB; EOG6X3W2S; -. DR BioCyc; HPY:HP0525-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001482; T2SS_protein-E. DR InterPro; IPR014155; VirB11. DR Pfam; PF00437; T2SSE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR02788; VirB11; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 36 317 T2SP_E. {ECO:0000259|Pfam:PF00437}. SQ SEQUENCE 330 AA; 37580 MW; 8B7B2DD8870DA121 CRC64; MTEDRLSAED KKFLEVERAL KEAALNPLRH ATEELFGDFL KMENITEICY NGNKVVWVLK NNGEWQPFDV RDRKAFSLSR LMHFARCCAS FKKKTIDNYE NPILSSNLAN GERVQIVLSP VTVNDETISI SIRIPSKTTY PHSFFEEQGF YNLLDNKEQA ISAIKDGIAI GKNVIVCGGT GSGKTTYIKS IMEFIPKEER IISIEDTEEI VFKHHKNYTQ LFFGGNITSA DCLKSCLRMR PDRIILGELR SSEAYDFYNV LCSGHKGTLT TLHAGSSEEA FIRLANMSSS NSAARNIKFE SLIEGFKDLI DMIVHINHHK QCDEFYIKHR // ID O25041_HELPY Unreviewed; 132 AA. AC O25041; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07335.1}; GN OrderedLocusNames=HP_0261 {ECO:0000313|EMBL:AAD07335.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07335.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07335.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25270:HP_0537; NbExp=2; IntAct=EBI-527892, EBI-527906; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07335.1; -; Genomic_DNA. DR PIR; E64552; E64552. DR RefSeq; NP_207059.1; NC_000915.1. DR RefSeq; WP_001160132.1; NC_018939.1. DR ProteinModelPortal; O25041; -. DR DIP; DIP-3310N; -. DR IntAct; O25041; 17. DR MINT; MINT-163431; -. DR STRING; 85962.HP0261; -. DR PaxDb; O25041; -. DR EnsemblBacteria; AAD07335; AAD07335; HP_0261. DR GeneID; 900120; -. DR KEGG; heo:C694_01320; -. DR KEGG; hpy:HP0261; -. DR PATRIC; 20591749; VBIHelPyl33062_0272. DR OrthoDB; EOG64XXMB; -. DR BioCyc; HPY:HP0261-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 132 AA; 15746 MW; DBBB9E4556DD2B9F CRC64; MQFLNQSLGF FNKGCFEPID RNFITESYQA LKPIEEIQNK YNKHDNDSFL NELRDSMVAL YLDYELINIQ KHGLDAKRSS SDEFLEIKQV SFQSQLIKEF EFKMKPIDSK EQELINLFNL KFGHFSWENY LA // ID O24927_HELPY Unreviewed; 253 AA. AC O24927; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07180.1}; GN OrderedLocusNames=HP_0101 {ECO:0000313|EMBL:AAD07180.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07180.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07180.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07180.1; -; Genomic_DNA. DR PIR; E64532; E64532. DR RefSeq; NP_206901.1; NC_000915.1. DR RefSeq; WP_000853678.1; NC_018939.1. DR ProteinModelPortal; O24927; -. DR DIP; DIP-3191N; -. DR IntAct; O24927; 1. DR MINT; MINT-174636; -. DR STRING; 85962.HP0101; -. DR PaxDb; O24927; -. DR EnsemblBacteria; AAD07180; AAD07180; HP_0101. DR GeneID; 900157; -. DR KEGG; heo:C694_00495; -. DR KEGG; hpy:HP0101; -. DR PATRIC; 20591413; VBIHelPyl33062_0106. DR OMA; YRFRSYL; -. DR OrthoDB; EOG6QCD7P; -. DR BioCyc; HPY:HP0101-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 253 AA; 29463 MW; C9A6BBE2C5A90003 CRC64; MKTLFSIYLF LSLNPLFLEA NEITWSKFLE NFKNKNDDDK PKPLTIDKNN EKQQILDKNQ QILKRALEKS LKFFFIFGYN YSQATFSTSN QTLTFVANSI GFNTATGLEH FLRNHPKVGF RIFSVYNYFH SVSLSQPQTL MVQNYGGALD FSWIFVDKNI YRFRSYLGIA LEQGVLLVDT IKPGAITTII PRTKKTFFQA PLRFGFIVDF IGYLSLQLGI EMPLVRNVFY TYNNHQERFK PRFNANLSLI VSF // ID O25014_HELPY Unreviewed; 390 AA. AC O25014; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07294.1}; GN OrderedLocusNames=HP_0228 {ECO:0000313|EMBL:AAD07294.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07294.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07294.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07294.1; -; Genomic_DNA. DR PIR; D64548; D64548. DR RefSeq; NP_207026.1; NC_000915.1. DR RefSeq; WP_001227442.1; NC_000915.1. DR ProteinModelPortal; O25014; -. DR DIP; DIP-3077N; -. DR IntAct; O25014; 2. DR MINT; MINT-185842; -. DR STRING; 85962.HP0228; -. DR PaxDb; O25014; -. DR PRIDE; O25014; -. DR EnsemblBacteria; AAD07294; AAD07294; HP_0228. DR GeneID; 900128; -. DR KEGG; hpy:HP0228; -. DR PATRIC; 20591679; VBIHelPyl33062_0239. DR eggNOG; ENOG4105CHH; Bacteria. DR eggNOG; COG0659; LUCA. DR KO; K03321; -. DR OMA; IPETAGF; -. DR OrthoDB; EOG66XB9R; -. DR BioCyc; HPY:HP0228-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008271; F:secondary active sulfate transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR011547; SLC26A/SulP_dom. DR InterPro; IPR001902; SLC26A/SulP_fam. DR PANTHER; PTHR11814; PTHR11814; 1. DR Pfam; PF00916; Sulfate_transp; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 113 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 119 137 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 149 166 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 223 242 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 262 283 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 295 314 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 320 345 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 357 384 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 19 144 Sulfate_transp. FT {ECO:0000259|Pfam:PF00916}. FT DOMAIN 166 357 Sulfate_transp. FT {ECO:0000259|Pfam:PF00916}. SQ SEQUENCE 390 AA; 42124 MW; 73D6F49651FC33AD CRC64; MRKKGMFEKI QKEWLSNIQK DLLSGFVVGL SVIPETAGFA IMVGLDVGVA FYTTFYMAFV LSLFGARKAM ISAAAGSVAL ILVGVVKNYG LEYAGVATLM AGVLQILLGY LKIGNLLRFI PQSVMYGFVN ALGILLLMEQ FKFLQNQNLG VFVLLAIGIL IIYLFPLITK KIPSNLICIL IVSAIALIFD MHAPNLGSIE QGVSGFHFII IPKNLDFKIM IELLPYALSL ALVGTIESLL TAKTLDVILK DGVSDKNKET KAQGLGNIIS GLLGGMTGCA LVGQSIINAK SGAKTRLSTF FAGFSLMVLI LVFNEYVVKI PIVAVVAVMV MISFTTFNFQ SIINIKKIKL YDTLNMLLVV AVVLYTHNLA IGVVVGVLVN ALWIKSKGIA // ID O25912_HELPY Unreviewed; 168 AA. AC O25912; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08408.1}; GN OrderedLocusNames=HP_1358 {ECO:0000313|EMBL:AAD08408.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08408.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08408.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08408.1; -; Genomic_DNA. DR PIR; F64689; F64689. DR RefSeq; NP_208150.1; NC_000915.1. DR RefSeq; WP_000953192.1; NC_018939.1. DR ProteinModelPortal; O25912; -. DR IntAct; O25912; 4. DR STRING; 85962.HP1358; -. DR PaxDb; O25912; -. DR DNASU; 900345; -. DR EnsemblBacteria; AAD08408; AAD08408; HP_1358. DR GeneID; 900345; -. DR KEGG; heo:C694_07010; -. DR KEGG; hpy:HP1358; -. DR PATRIC; 20594103; VBIHelPyl33062_1422. DR eggNOG; ENOG41061KU; Bacteria. DR eggNOG; ENOG41122XM; LUCA. DR OMA; EGWSVDS; -. DR OrthoDB; EOG6ZKXRF; -. DR BioCyc; HPY:HP1358-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.60; -; 1. DR InterPro; IPR009057; Homeodomain-like. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 168 AA; 19720 MW; C3C107159F3D558D CRC64; MLSSSDLFMV VLGAILLVLV CLVGYLYLKE KEFYHKMRRL EKTLDESYQE NYIYSKRLKE LEGRLEGLSL EKSAKEDSSL KTTLSHLYNQ LQEIQKSMDK ERDYLEEKII TLENKFKDMG HYAASDEINE KQVLKMYQEG YSVDSISKEF KVSKGEVEFI LNMAGLKW // ID O25252_HELPY Unreviewed; 658 AA. AC O25252; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07579.1}; GN OrderedLocusNames=HP_0513 {ECO:0000313|EMBL:AAD07579.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07579.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07579.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07579.1; -; Genomic_DNA. DR PIR; A64584; A64584. DR RefSeq; NP_207310.1; NC_000915.1. DR RefSeq; WP_001013140.1; NC_018939.1. DR ProteinModelPortal; O25252; -. DR DIP; DIP-3445N; -. DR IntAct; O25252; 1. DR MINT; MINT-183389; -. DR STRING; 85962.HP0513; -. DR PaxDb; O25252; -. DR EnsemblBacteria; AAD07579; AAD07579; HP_0513. DR GeneID; 898743; -. DR KEGG; heo:C694_02640; -. DR KEGG; hpy:HP0513; -. DR PATRIC; 20592303; VBIHelPyl33062_0540. DR eggNOG; ENOG4105DPE; Bacteria. DR eggNOG; COG1479; LUCA. DR eggNOG; COG3586; LUCA. DR OMA; HHRINEN; -. DR OrthoDB; EOG6SV575; -. DR BioCyc; HPY:HP0513-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011089; DUF1524. DR InterPro; IPR004919; DUF262. DR Pfam; PF07510; DUF1524; 1. DR Pfam; PF03235; DUF262; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 172 DUF262. {ECO:0000259|Pfam:PF03235}. FT DOMAIN 359 493 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 658 AA; 78182 MW; 72CF7028E68912D9 CRC64; MNGHFIGSIL YVLDSNTHSN NTLLIIDGQQ RLTTITLLLI ALRNHLSEEV EILEKFSRKE IESYLINSNK DGDKKFRLIL SESDKDTLLS LIDKNKRKPS EPSVKIVENF ELFEKWISEN TDKLETIFKG LKKLMIVWIS LDKGKDDPQL IFESMNSKDI ELTQTDLIRN YIVMETEVEK QEDFYNQYWR AMEERFEQNE TLFNRFVRHY LTIKIGKIPN EKRVYEAFKD YRQKKGIEIE DLLKDLQKYC GYFCQIAFKK EDDKDLNKAL SFLVNLEMDV IYPLLLELYS DYKDGVLSKQ DFIPIIYLIE SYICRRAVCG LGTNSLNKVF PSFTKHIQKD EYFKSLKAHF VCLTEKQRFP NNDEFKKLFI TIDFYKFKKN KYFLERLENF DTKEPVDTQK CNIEHIMPQT LTPEWQRDLG ENFQAIHEKY LHTIGNLTLT GYNSKYSNNS FQEKRDMEKG FKQSSLKLNQ SLKDLESFGE KEIEKRASDL ADWALKIWTY PILEAETLEE YKPKKEKKEK KEKEEYKLKK EKKVYDLSSY KFSSDSRELF DILREKIKAL DERITEKFNQ KYIAYKFCKI SFVDIVVQEK GLKLYLKMNL NELQDEIKEK LKIRDVSNIG RPCVGNMEVE LETKENIPYC LGLIKQALEK QMGGRNRQ // ID O25787_HELPY Unreviewed; 183 AA. AC O25787; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08225.1}; GN OrderedLocusNames=HP_1173 {ECO:0000313|EMBL:AAD08225.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08225.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08225.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08225.1; -; Genomic_DNA. DR PIR; E64666; E64666. DR RefSeq; NP_207964.1; NC_000915.1. DR RefSeq; WP_000120132.1; NC_018939.1. DR ProteinModelPortal; O25787; -. DR DIP; DIP-3661N; -. DR IntAct; O25787; 5. DR MINT; MINT-162088; -. DR STRING; 85962.HP1173; -. DR PaxDb; O25787; -. DR EnsemblBacteria; AAD08225; AAD08225; HP_1173. DR GeneID; 899933; -. DR KEGG; heo:C694_06060; -. DR KEGG; hpy:HP1173; -. DR PATRIC; 20593699; VBIHelPyl33062_1228. DR OMA; CYAFRML; -. DR OrthoDB; EOG6GBMBJ; -. DR BioCyc; HPY:HP1173-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 26 {ECO:0000256|SAM:SignalP}. FT CHAIN 27 183 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157813. SQ SEQUENCE 183 AA; 20586 MW; 45C5797D37A6E655 CRC64; MSYFYKHCLK FSLVGLLGLL SVQLDARSFV DGDLDIQKFS YEDSLLKKGD PNGVHKVQVR DYKGKMQEAE IHSEIRIALK PGVKKEVKKG KIYSAQINDG MCYAFRMLQT GDNTTGLDSK EFPKQSREKK GRVITLIGKG EVPYLILETD CQVGDIAKIS LVGNFDGTGF LTEYKFKDAK PIY // ID O25844_HELPY Unreviewed; 348 AA. AC O25844; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE SubName: Full=Oligopeptide ABC transporter, permease protein (OppB) {ECO:0000313|EMBL:AAD08295.1}; GN OrderedLocusNames=HP_1251 {ECO:0000313|EMBL:AAD08295.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08295.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08295.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08295.1; -; Genomic_DNA. DR PIR; C64676; C64676. DR RefSeq; NP_208043.1; NC_000915.1. DR RefSeq; WP_000562619.1; NC_018939.1. DR ProteinModelPortal; O25844; -. DR STRING; 85962.HP1251; -. DR PaxDb; O25844; -. DR EnsemblBacteria; AAD08295; AAD08295; HP_1251. DR GeneID; 898794; -. DR KEGG; heo:C694_06465; -. DR KEGG; hpy:HP1251; -. DR PATRIC; 20593879; VBIHelPyl33062_1310. DR eggNOG; ENOG4108EKB; Bacteria. DR eggNOG; COG4174; LUCA. DR KO; K13894; -. DR OMA; LWTFFIS; -. DR OrthoDB; EOG66F098; -. DR BioCyc; HPY:HP1251-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 9 30 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 121 141 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 153 178 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 208 231 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 266 293 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 313 339 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 117 332 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 348 AA; 38893 MW; 291E953BDAEBB7E2 CRC64; MIAYILKRLL LIIPTLLAIM TINFFLIQSA PGGPIEQMMA KINNTQSKEI QGVVKERSYR ASQGLESDLL ENLKKLYGFD KPIGERYLLM LKKYLQFDFG ESFYRQIKVI DLIKEKLPVS ISLGLFSTLL IYLISIPLGI FKAKRNNEPL DVLSSVVIIV ANAIPAFLFA VVLIVFFAGG NYWHWFPLKG LVSDNFESLS ALGKIKDYLW HITLPVLCIS LGGFASLTLL VKNSFLDEMG KLYVLSAKAK GCSVGRIFYA HVFRNAILLV VAGFPQAFLG MFFSSSLLIE IVFSLDGLGL LGYESIVSRD YPVVFGSLYI FTLLGLVASL ISDLLCVVID PRIDFEKR // ID O26071_HELPY Unreviewed; 170 AA. AC O26071; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08590.1}; GN OrderedLocusNames=HP_1546 {ECO:0000313|EMBL:AAD08590.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08590.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08590.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08590.1; -; Genomic_DNA. DR PIR; B64713; B64713. DR RefSeq; NP_208337.1; NC_000915.1. DR RefSeq; WP_001202125.1; NC_018939.1. DR ProteinModelPortal; O26071; -. DR IntAct; O26071; 4. DR STRING; 85962.HP1546; -. DR PaxDb; O26071; -. DR EnsemblBacteria; AAD08590; AAD08590; HP_1546. DR GeneID; 899745; -. DR KEGG; heo:C694_08010; -. DR KEGG; hpy:HP1546; -. DR PATRIC; 20594515; VBIHelPyl33062_1625. DR eggNOG; ENOG4105MU7; Bacteria. DR eggNOG; ENOG4111VKM; LUCA. DR OMA; VYVKLIV; -. DR OrthoDB; EOG6NGVRQ; -. DR BioCyc; HPY:HP1546-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0019867; C:outer membrane; IEA:InterPro. DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:InterPro. DR InterPro; IPR007485; LPS_assembly_LptE. DR Pfam; PF04390; LptE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 170 AA; 19596 MW; 445831505EBA9308 CRC64; MRALLFFILL LWFKGCGYKP IAAYAQNALG DSVYVKLIVN LPNPENSVEF KDLMNRLVVQ RFQSRLASEK DADSIIIIEI TNVTDTSITQ NKEGFTTFYR ATVSVNYTYD NKRGTQKTFQ DSGYYNYAVN LQDPLNTYQN RYYAINQAVE QTLTKFVAQI AYEGKFNNEK // ID O25762_HELPY Unreviewed; 433 AA. AC O25762; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08189.1}; GN OrderedLocusNames=HP_1143 {ECO:0000313|EMBL:AAD08189.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08189.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08189.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08189.1; -; Genomic_DNA. DR PIR; G64662; G64662. DR RefSeq; NP_207934.1; NC_000915.1. DR RefSeq; WP_001157499.1; NC_018939.1. DR ProteinModelPortal; O25762; -. DR DIP; DIP-3239N; -. DR IntAct; O25762; 2. DR MINT; MINT-176823; -. DR STRING; 85962.HP1143; -. DR PaxDb; O25762; -. DR EnsemblBacteria; AAD08189; AAD08189; HP_1143. DR GeneID; 899680; -. DR KEGG; heo:C694_05895; -. DR KEGG; hpy:HP1143; -. DR PATRIC; 20593631; VBIHelPyl33062_1195. DR eggNOG; ENOG4105D4I; Bacteria. DR eggNOG; COG4487; LUCA. DR OMA; RGGDCIQ; -. DR OrthoDB; EOG6CGC9K; -. DR BioCyc; HPY:HP1143-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR019219; DUF2130. DR Pfam; PF09903; DUF2130; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 58 81 {ECO:0000256|SAM:Coils}. FT COILED 114 210 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 433 AA; 50644 MW; 585DE58DFA2067F6 CRC64; MQENQTRPFI CPKCQEPIDV NEALYKQIEQ ENQNKFLAQQ KEFEKEVNEK RAQYLSYFKN LEQKEETLKE REKEQQAKFD EAVKQASALA LQDERAKIIE EARKNAFLEQ QKGLELLQKE LDEKSKQVQE LHQKEAEIER LKRENNEAES RLKAENEKKL NEKLDLEREK IEKALHEKNE LKFKQQEEQL EMLRNELKNA QRKAELSSQQ FQGEVQELAI EEFLRQKFPL DCIEEIKKGQ RGGDCIQVVH TREFQNCGKI YYESKRTKEF QKAWVEKLKS DMREIGADVG VIVSEALPKE MERMGLFEGV WVCSFEEFKG LSAVLREGVI QVSLAKKSQE NKGDKVNLLY HYLTSSEFSM QVNVIIEGFE QLRADLESEK RAMARIWKSR EKQIDKVFEG TINMYGSIKG IAGNAIGQVK ALELGYDGED LED // ID O25498_HELPY Unreviewed; 153 AA. AC O25498; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07873.1}; GN OrderedLocusNames=HP_0820 {ECO:0000313|EMBL:AAD07873.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07873.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07873.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07873.1; -; Genomic_DNA. DR PIR; D64622; D64622. DR RefSeq; NP_207613.1; NC_000915.1. DR RefSeq; WP_000437145.1; NC_018939.1. DR ProteinModelPortal; O25498; -. DR IntAct; O25498; 5. DR STRING; 85962.HP0820; -. DR PaxDb; O25498; -. DR EnsemblBacteria; AAD07873; AAD07873; HP_0820. DR GeneID; 898799; -. DR KEGG; heo:C694_04200; -. DR KEGG; hpy:HP0820; -. DR PATRIC; 20592929; VBIHelPyl33062_0853. DR OMA; DARLHEC; -. DR OrthoDB; EOG6FJNFX; -. DR BioCyc; HPY:HP0820-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 153 AA; 18051 MW; 9B4CC6E8346FA27E CRC64; MEQNIFSLLI QKKSYKKLET LLKLKKLKVF MPLSLQENLL FIFIKDSKLL FAFKDIWASK EFNQRFAKEI SHFLNTQGHA YGFDGLNGLE ILGYVPKDAL KKSNFYAPIK KQARFFRPSA LGLFHNPIKD ARLHECFEKA RALIHYQRSF FEE // ID O25414_HELPY Unreviewed; 660 AA. AC O25414; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07763.1}; GN OrderedLocusNames=HP_0710 {ECO:0000313|EMBL:AAD07763.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07763.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07763.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07763.1; -; Genomic_DNA. DR PIR; F64608; F64608. DR RefSeq; NP_207504.1; NC_000915.1. DR RefSeq; WP_001228436.1; NC_018939.1. DR ProteinModelPortal; O25414; -. DR DIP; DIP-3176N; -. DR IntAct; O25414; 2. DR MINT; MINT-176675; -. DR STRING; 85962.HP0710; -. DR PaxDb; O25414; -. DR EnsemblBacteria; AAD07763; AAD07763; HP_0710. DR GeneID; 900247; -. DR KEGG; heo:C694_03655; -. DR KEGG; hpy:HP0710; -. DR PATRIC; 20592707; VBIHelPyl33062_0742. DR OMA; KHYGQLG; -. DR OrthoDB; EOG6HJ29R; -. DR BioCyc; HPY:HP0710-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 660 AA; 73343 MW; AF7D47C2FFABAE5A CRC64; MRKLFIPLLL FSALEANEKN GFFIEAGFET GLLEGTQTQE KRHTTTKNTY ATYNYLPTDT ILKRAANLFT NAEAISKLKF SSLSPVRVLY MYNGQLTIEN FLPYNLSNVK LSFTDAQGNV IDLGVIETIP KHSKIVLPGE AFDSLKIDPY TLFLPKIEAT STSVSDANTQ RVFETLNKIK TDLVVNYRNE NKFKDHENHW EAFTPQTAEE FTNLMLNMIA VLDSQSWGDA ILNAPFEFTN KDGGEECDTS KENECVNPGT NGRVNSKVDQ QYVLNKQDIV NKFRNKADLD VVILKDSGVV GLGSDITPSN NDDGKHYGQL GVVASALDPK KLFGDNLKTI NLEDLRTILH EFSHTKGYTH NGNMTYQRVP VMKDGQVEKD SNGKPKDSDG LPYNVCSLYG GQGQSAFPSN YPNSIYHNCA DVPAGFLGVT AAVWQQLINQ NALPINYANL STQTNYNLNA SLNTQDLANS MLSTIQKTFV TSSVTNHYSS SASQSFRSPI LGVNAKIGYQ NYFNDFIGLA YYGIIKYNYA KAINQKVQQL SYGGGIDLLL DFITTYSNKN SPTGIQTKRN FSSSFGIFGG LRGLYNSYYV LNKVKGSGNL DVATGLNYRY KHSKYSVGIS IPLIQRKASV VSNGGDYTNS FVFNEGASHF KVFFNYGWVF // ID O24943_HELPY Unreviewed; 141 AA. AC O24943; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07198.1}; GN OrderedLocusNames=HP_0129 {ECO:0000313|EMBL:AAD07198.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07198.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07198.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07198.1; -; Genomic_DNA. DR PIR; A64536; A64536. DR RefSeq; NP_206929.1; NC_000915.1. DR RefSeq; WP_000731991.1; NC_018939.1. DR ProteinModelPortal; O24943; -. DR IntAct; O24943; 3. DR STRING; 85962.HP0129; -. DR PaxDb; O24943; -. DR EnsemblBacteria; AAD07198; AAD07198; HP_0129. DR GeneID; 899128; -. DR KEGG; heo:C694_00635; -. DR KEGG; hpy:HP0129; -. DR PATRIC; 20591477; VBIHelPyl33062_0138. DR OMA; EYREEGL; -. DR OrthoDB; EOG6N3CTX; -. DR BioCyc; HPY:HP0129-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR009488; DUF1104. DR Pfam; PF06518; DUF1104; 1. DR PIRSF; PIRSF016128; DUF1104; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 141 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157994. SQ SEQUENCE 141 AA; 16292 MW; F2612816F10F2CF7 CRC64; MKKLAVSLLF TGTFLGLFLN ASDFKSMDDK QLLEQAGKVA PSEVPEFRAE VNKRLAVMKE EDRKNYKADF KKAMDKNLAS LSQEDRNKRK KEILEAIANK KKTMTMKEYR EEGLDLHDCA CEGPFHDHER KKGKKPSHHK H // ID O25786_HELPY Unreviewed; 277 AA. AC O25786; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Glutamine ABC transporter, periplasmic glutamine-binding protein (GlnH) {ECO:0000313|EMBL:AAD08218.1}; GN OrderedLocusNames=HP_1172 {ECO:0000313|EMBL:AAD08218.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08218.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08218.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08218.1; -; Genomic_DNA. DR PIR; D64666; D64666. DR RefSeq; NP_207963.1; NC_000915.1. DR RefSeq; WP_000855958.1; NC_018939.1. DR ProteinModelPortal; O25786; -. DR SMR; O25786; 33-277. DR STRING; 85962.HP1172; -. DR PaxDb; O25786; -. DR EnsemblBacteria; AAD08218; AAD08218; HP_1172. DR GeneID; 899932; -. DR KEGG; heo:C694_06055; -. DR KEGG; hpy:HP1172; -. DR PATRIC; 20593697; VBIHelPyl33062_1227. DR eggNOG; ENOG4108M22; Bacteria. DR eggNOG; ENOG410ZHS8; LUCA. DR KO; K02030; -. DR OMA; CSDSHKE; -. DR OrthoDB; EOG6JQH58; -. DR BioCyc; HPY:HP1172-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR001638; Solute-binding_3/MltF_N. DR Pfam; PF00497; SBP_bac_3; 1. DR SMART; SM00062; PBPb; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 43 264 PBPb. {ECO:0000259|SMART:SM00062}. SQ SEQUENCE 277 AA; 31221 MW; 4B31CC7663A7869B CRC64; MKTNGLFKMW GLFLVLIALV FNACSDSHKE KKDALEVIKQ RGVLKVGVFS DKPPFGSVDS KGKYQGYDVV IAKRMALDLL GDENKIEFIP VEASARVEFL KANKVDIIMA NFTRTKEREK VVDFAKPYMK VALGVVSKDG VIKNIEELKD KELIVNKGTT ADFYFTKNYP NIKLLKFEQN TETFLALLNN KATALAHDNT LLLAWTKQHP EFKLGITSLG DKDVIAPAIK KGNPKLLEWL NNEIDSLISS DFLKEAYQET LAPVYGDEIK PEEIIFE // ID O25262_HELPY Unreviewed; 1927 AA. AC O25262; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Cag pathogenicity island protein (Cag7) {ECO:0000313|EMBL:AAD07594.1}; GN OrderedLocusNames=HP_0527 {ECO:0000313|EMBL:AAD07594.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07594.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07594.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07594.1; -; Genomic_DNA. DR PIR; G64585; G64585. DR RefSeq; NP_207323.1; NC_000915.1. DR RefSeq; WP_001001434.1; NC_018939.1. DR ProteinModelPortal; O25262; -. DR DIP; DIP-3092N; -. DR IntAct; O25262; 9. DR MINT; MINT-184404; -. DR STRING; 85962.HP0527; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25262; -. DR EnsemblBacteria; AAD07594; AAD07594; HP_0527. DR GeneID; 899268; -. DR KEGG; heo:C694_02720; -. DR KEGG; hpy:HP0527; -. DR PATRIC; 20592329; VBIHelPyl33062_0553. DR eggNOG; ENOG4108XQC; Bacteria. DR eggNOG; COG2948; LUCA. DR KO; K12092; -. DR OMA; EANHFEN; -. DR OrthoDB; EOG654NZP; -. DR BioCyc; HPY:HP0527-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR029285; CagY_I. DR InterPro; IPR010853; CagY_M. DR InterPro; IPR005498; T4SS_VirB10/TraB/TrbI. DR Pfam; PF14585; CagY_I; 3. DR Pfam; PF07337; CagY_M; 27. DR Pfam; PF03743; TrbI; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 343 368 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 106 133 {ECO:0000256|SAM:Coils}. FT COILED 236 263 {ECO:0000256|SAM:Coils}. FT COILED 1088 1115 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1927 AA; 219401 MW; 408BE74C3FD7B952 CRC64; MNEENDKLET SKKAQQDSPQ DLSNEEATEA NHFENLLKES KESSDHHLDN PTETQTHFDG DKSEETQTQM DSEGNETSES SNGSLADKLF KKARKLVDNK KPFTQQKNLD EETQELNEED DQENNEYQEE TQTDLIDDET SKKTQQHSPQ DLSNEEATEA NHFENLLKES KESSDHHLDN PTETQTNFDG DKSEETQTQM DSEGNETSES SNGSLADKLF KKARKLVDNK KPFTQQKNLD EETQELNEED DQENNEYQEE TQTDLIDDET SKKTQQHSPQ DLSNEEATEA NHFENLLKES KESSDHHLDN PTETQTNFDG DKSEEITDDS NDQEIIKGSK KKYIIGGIVV AVLIVIILFS RSIFHYFMPL EDKSSRFSKD RNLYVNDEIQ IRQEYNRLLK ERNEKGNMID KNLFFNDDPN RTLYNYLNIA EIEDKNPLRA FYECISNGGN YEECLKLIKD KKLQDQMKKT LEAYNDCIKN AKTEEERIKC LDLIKDENLK KSLLNQQKVQ VALDCLKNAK TDEERNECLK LINDPEIREK FRKELELQKE LQEYKDCIKN AKTEAEKNKC LKGLSKEAIE RLKQQALDCL KNAKTDEERN ECLKNIPQDL QKELLADMSV KAYKDCVSKA RNEKEKQECE KLLTPEARKK LEQQVLDCLK NAKTDEERKK CLKDLPKDLQ SDILAKESLK AYKDCVSQAK TEAEKKECEK LLTPEAKKLL EEEAKESVKA YLDCVSQAKT EAEKKECEKL LTPEAKKKLE EAKKSVKAYL DCVSRARNEK EKKECEKLLT PEAKKLLEQQ ALDCLKNAKT DKERKKCLKD LPKDLQKKVL AKESVKAYLD CVSQAKTEAE KKECEKLLTP EARKLLEEAK KSVKAYLDCV SQAKTEAEKK ECEKLLTPEA RKLLEEXAKE SVKAYLDCVS QAKNEAEKKE CEKLLTLESK KKLEEAKKSV KAYLDCVSQA KTEAEKKECE KLLTPEAKKL LEQQALDCLK NAKTEADKKR CVKDLPKDLQ KKVLAKESLK AYKDCVSKAR NEKEKKECEK LLTPEAKKLL EEAKKSVKAY LDCVSQAKTE AEKKECEKLL TPEARKLLEE AKESVKAYKD CVSKARNEKE KKECEKLLTP EAKKLLEQQV LDCLKNAKTE ADKKRCVKDL PKDLQKKVLA KESVKAYLDC VSRARNEKEK KECEKLLTPE AKKLLEEAKE SLKAYKDCLS QARNEEERRA CEKLLTPEAR KLLEQEVKKS IKAYLDCVSR ARNEKEKKEC EKLLTPEARK FLAKQVLNCL EKAGNEEERK ACLKNLPKDL QENILAKESL KAYKDCLSQA RNEEERRACE KLLTPEARKL LEQEVKKSVK AYLDCVSRAR NEKEKKECEK LLTPEARKFL AKELQQKDKA IKDCLKNADP NDRAAIMKCL DGLSDEEKLK YLQEAREKAV ADCLAMAKTD EEKRKCQNLY SDLIQEIQNK RTQNKQNQLS KTERLHQASE CLDNLDDPTD QEAIEQCLEG LSDSERALIL GIKRQADEVD LIYSDLRNRK TFDNMAAKGY PLLPMDFKNG GDIATINATN VDADKIASDN PIYASIEPDI AKQYETEKTI KDKNLEAKLA KALGGNKKDD DKEKSKKSTA EAKAENNKID KDVAETAKNI SEIALKNKKE KSGEFVDENG NPIDDKKKAE KQDETSPVKQ AFIGKSDPTF VLAQYTPIEI TLTSKVDATL TGIVSGVVAK DVWNMNGTMI LLDKGTKVYG NYQSVKGGTP IMTRLMIVFT KAITPDGVII PLANAQAAGM LGEAGVDGYV NNHFMKRIGF AVIASVVNSF LQTAPIIALD KLIGLGKGRS ERTPEFNYAL GQAINGSMQS SAQMSNQILG QLMNIPPSFY KNEGDSIKIL TMDDIDFSGV YDVKITNKSV VDEIIKQSTK TLSREHEEIT TSPKGGN // ID O25132_HELPY Unreviewed; 133 AA. AC O25132; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07437.1}; GN OrderedLocusNames=HP_0368 {ECO:0000313|EMBL:AAD07437.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07437.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07437.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07437.1; -; Genomic_DNA. DR PIR; H64565; H64565. DR ProteinModelPortal; O25132; -. DR DIP; DIP-3392N; -. DR IntAct; O25132; 6. DR MINT; MINT-166682; -. DR STRING; 85962.HP0368; -. DR REBASE; 4617; HpyAORF369P. DR PaxDb; O25132; -. DR PRIDE; O25132; -. DR EnsemblBacteria; AAD07437; AAD07437; HP_0368. DR PATRIC; 20591971; VBIHelPyl33062_0379. DR OMA; QANYKLT; -. DR OrthoDB; EOG644ZQ0; -. DR BioCyc; HPY:HP0368-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 133 AA; 15764 MW; 265AC5097591CD7E CRC64; MLNAIDGVIN DGIIHDEYDI MTKSGVSFEV KTARKGRTNN TFQFNGINPR YNYDFLICLG VCEDQLLYRI FKKDKIHYIH KERKYFMKQN EFKKQLVPMN PDNQVNYKLT LNLKELKEIT NLIKELERVL GLD // ID O25606_HELPY Unreviewed; 218 AA. AC O25606; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07996.1}; GN OrderedLocusNames=HP_0952 {ECO:0000313|EMBL:AAD07996.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07996.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07996.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25152:HP_0391; NbExp=3; IntAct=EBI-9260819, EBI-7496390; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07996.1; -; Genomic_DNA. DR PIR; H64638; H64638. DR RefSeq; NP_207744.1; NC_000915.1. DR RefSeq; WP_000669256.1; NC_018939.1. DR ProteinModelPortal; O25606; -. DR IntAct; O25606; 2. DR STRING; 85962.HP0952; -. DR PaxDb; O25606; -. DR EnsemblBacteria; AAD07996; AAD07996; HP_0952. DR GeneID; 899485; -. DR KEGG; heo:C694_04905; -. DR KEGG; hpy:HP0952; -. DR PATRIC; 20593217; VBIHelPyl33062_0990. DR eggNOG; ENOG4107TH8; Bacteria. DR eggNOG; COG1546; LUCA. DR KO; K03743; -. DR OMA; TIYIGTQ; -. DR OrthoDB; EOG61S359; -. DR BioCyc; HPY:HP0952-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.90.950.20; -; 1. DR InterPro; IPR008136; CinA_C. DR Pfam; PF02464; CinA; 1. DR SUPFAM; SSF142433; SSF142433; 1. DR TIGRFAMs; TIGR00199; PncC_domain; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 65 218 CinA. {ECO:0000259|Pfam:PF02464}. SQ SEQUENCE 218 AA; 23985 MW; C31A1C60109E16F1 CRC64; MKFKFLNMDN ESGFILIEKE LKRLNILAQV KEDCIELKGE NTEQARIYLK TLFNSNIVEL DDHQKSANAL IERLKSLDLK IAVAESCSGG LLSHAFTSIS GASAVFMGGI VCYNEEVKRE LLKVNATTLK VFGVYSEECV KEMLLGVFLN FKVDLALAMS GVAGPNGGNK ANPVGTIYIG AQKLGSQALI DRCFFEGNRE SIQNKSVEHA LNMLARML // ID O25550_HELPY Unreviewed; 614 AA. AC O25550; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07939.1}; GN OrderedLocusNames=HP_0884 {ECO:0000313|EMBL:AAD07939.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07939.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07939.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07939.1; -; Genomic_DNA. DR PIR; D64630; D64630. DR RefSeq; NP_207677.1; NC_000915.1. DR RefSeq; WP_000051272.1; NC_018939.1. DR ProteinModelPortal; O25550; -. DR DIP; DIP-3599N; -. DR IntAct; O25550; 2. DR MINT; MINT-179595; -. DR STRING; 85962.HP0884; -. DR PaxDb; O25550; -. DR EnsemblBacteria; AAD07939; AAD07939; HP_0884. DR GeneID; 899412; -. DR KEGG; heo:C694_04530; -. DR KEGG; hpy:HP0884; -. DR PATRIC; 20593057; VBIHelPyl33062_0916. DR eggNOG; ENOG4108N0T; Bacteria. DR eggNOG; ENOG410ZQH2; LUCA. DR OMA; PGRNCRG; -. DR OrthoDB; EOG6VTJXN; -. DR BioCyc; HPY:HP0884-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005646; DUF342. DR Pfam; PF03961; DUF342; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 141 168 {ECO:0000256|SAM:Coils}. FT COILED 480 514 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 614 AA; 70803 MW; CD0485DC2DD4589A CRC64; MSLERFAPIK VERCKDIQKE LKKAAAENKL QTEDLWFEIL KTSIFIKNSA KDDFSEAFGG ELQQLEEEEY YEKKELTLYQ THDIKIKSNA YKRFFEVKVD ENLSAIEIIL DECFIVLDTE EHYQEMFAYI KECLAFQGVV FRHFSQMYEN LKTELRKYQK EAQNKRFILY TSSTFIPNIE EQSHFLLEEE YLPTHTIFLS DQEESFVKEN YYIAKENQKV ACVNCPKQGR DGRNLKGLYI ELPKVAHSPT PIGHDKNAFE EREENNALVY YSKALQGVKM EKGRLVSKQN FIFKNGIKSI ETPNLLGGLE SGLALEIQAR DELSDAIDSN LILEASVINI KGNVGKNVIL VAKEITIEGQ IHPESYVYAN KARITNHKGV CYAKELECKY LERAKVYANS VKVEASAGSV VYAKEIALEK LKSDNKLYFS KQCWIDEVDG NGNRFIFYAF GGRENQEELK AAKQKLNALG LKSKKIIAQH QSLNHLVKNH QAIMEKLKNA TEEIKRSLMQ QESVKDAYSE FMFALKRLKI LKAQMLELQK INNECYAKLI SIENSFQHAS ITTKNPFKQE NIVIYHRNYP KVSNSTAMLS HNESVNVIYE DHKIKKVPKS AIKG // ID O26032_HELPY Unreviewed; 145 AA. AC O26032; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08547.1}; GN OrderedLocusNames=HP_1502 {ECO:0000313|EMBL:AAD08547.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08547.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08547.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08547.1; -; Genomic_DNA. DR PIR; F64707; F64707. DR RefSeq; NP_208293.1; NC_000915.1. DR RefSeq; WP_000338876.1; NC_018939.1. DR ProteinModelPortal; O26032; -. DR STRING; 85962.HP1502; -. DR PaxDb; O26032; -. DR EnsemblBacteria; AAD08547; AAD08547; HP_1502. DR GeneID; 899789; -. DR KEGG; heo:C694_07780; -. DR KEGG; hpy:HP1502; -. DR PATRIC; 20594419; VBIHelPyl33062_1578. DR eggNOG; ENOG41060B0; Bacteria. DR eggNOG; COG3399; LUCA. DR KO; K09943; -. DR OMA; FDMVIFP; -. DR OrthoDB; EOG6B62C4; -. DR BioCyc; HPY:HP1502-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR007418; DUF474. DR PIRSF; PIRSF015875; UCP015875; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 78 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 90 111 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 123 143 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 145 AA; 16221 MW; E09183155E00F4C1 CRC64; MDAIYPYVLV VHLLCAIIFI GYLFFDGVIF PNVKKMFGEE FANKANTGIT QRAIKIMPLC VLGLVLTGGM MLSQYMGGDK GWCETPFQKI LMLKVILALS IFLLVLFSLS CKFLGKKNPI GKYIHPIALT FGFLIAILAK TMWFV // ID O25913_HELPY Unreviewed; 183 AA. AC O25913; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08409.1}; GN OrderedLocusNames=HP_1359 {ECO:0000313|EMBL:AAD08409.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08409.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08409.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08409.1; -; Genomic_DNA. DR PIR; G64689; G64689. DR RefSeq; NP_208151.1; NC_000915.1. DR RefSeq; WP_001029192.1; NC_000915.1. DR ProteinModelPortal; O25913; -. DR STRING; 85962.HP1359; -. DR PaxDb; O25913; -. DR PRIDE; O25913; -. DR EnsemblBacteria; AAD08409; AAD08409; HP_1359. DR GeneID; 900342; -. DR KEGG; hpy:HP1359; -. DR PATRIC; 20594105; VBIHelPyl33062_1423. DR OMA; ETRLVQC; -. DR OrthoDB; EOG6MWNBD; -. DR BioCyc; HPY:HP1359-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 183 AA; 21311 MW; 82821048186FFAAB CRC64; MAIWGWCFLF LSSLMWGLSM HELVLRSQAL GFETRLVQCD LSFSYERFIS KSKRSLAVLE EFDWLNSGFD FSRLNVENDT LELLKALYFK LEKLESLLLK ENLLELEQKD RITALGHGLI CLKKSSLIAP QTYYGRCVLE GKILAFFGVA RDKDFLEITR MHALDIKRYD SFIVHSERKG LKL // ID O25960_HELPY Unreviewed; 113 AA. AC O25960; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE RecName: Full=Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; GN Name=rsfS {ECO:0000256|HAMAP-Rule:MF_01477}; GN OrderedLocusNames=HP_1414 {ECO:0000313|EMBL:AAD08457.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08457.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08457.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Functions as a ribosomal silencing factor. Interacts CC with ribosomal protein L14 (rplN), blocking formation of CC intersubunit bridge B8. Prevents association of the 30S and 50S CC ribosomal subunits and the formation of functional ribosomes, thus CC repressing translation. {ECO:0000256|HAMAP-Rule:MF_01477}. CC -!- SUBUNIT: Interacts with ribosomal protein L14 (rplN). CC {ECO:0000256|HAMAP-Rule:MF_01477}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01477}. CC -!- SIMILARITY: Belongs to the Iojap/RsfS family. {ECO:0000256|HAMAP- CC Rule:MF_01477}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08457.1; -; Genomic_DNA. DR PIR; F64696; F64696. DR RefSeq; NP_208205.1; NC_000915.1. DR RefSeq; WP_001076151.1; NC_018939.1. DR ProteinModelPortal; O25960; -. DR DIP; DIP-3272N; -. DR IntAct; O25960; 13. DR MINT; MINT-161613; -. DR STRING; 85962.HP1414; -. DR PaxDb; O25960; -. DR EnsemblBacteria; AAD08457; AAD08457; HP_1414. DR GeneID; 899880; -. DR KEGG; heo:C694_07310; -. DR KEGG; hpy:HP1414; -. DR PATRIC; 20594225; VBIHelPyl33062_1482. DR eggNOG; ENOG41083CZ; Bacteria. DR eggNOG; COG0799; LUCA. DR KO; K09710; -. DR OMA; NWIVIDY; -. DR OrthoDB; EOG6J48TR; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0042256; P:mature ribosome assembly; IEA:UniProtKB-HAMAP. DR GO; GO:0090071; P:negative regulation of ribosome biogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0017148; P:negative regulation of translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01477; Iojap_RsfS; 1. DR InterPro; IPR004394; Iojap/RsfS/C7orf30. DR PANTHER; PTHR21043; PTHR21043; 1. DR TIGRFAMs; TIGR00090; rsfS_iojap_ybeB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01477}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Repressor {ECO:0000256|HAMAP-Rule:MF_01477}; KW Translation regulation {ECO:0000256|HAMAP-Rule:MF_01477}. SQ SEQUENCE 113 AA; 13012 MW; 7941DA518E940F1B CRC64; MNQRIETITA LLDEKKAFDI THIDLSKTPY LVEDVIIATT LANKHALSLL DALKNTLKPL GEVFYQIDES NEEWIILDLG DLMIHLFTEE CRKKFDLEGF LNAYKRGLPY QNA // ID O25800_HELPY Unreviewed; 269 AA. AC O25800; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08234.1}; GN OrderedLocusNames=HP_1188 {ECO:0000313|EMBL:AAD08234.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08234.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08234.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08234.1; -; Genomic_DNA. DR PIR; D64668; D64668. DR ProteinModelPortal; O25800; -. DR DIP; DIP-3609N; -. DR IntAct; O25800; 3. DR MINT; MINT-182371; -. DR STRING; 85962.HP1188; -. DR PaxDb; O25800; -. DR PRIDE; O25800; -. DR EnsemblBacteria; AAD08234; AAD08234; HP_1188. DR PATRIC; 20593735; VBIHelPyl33062_1245. DR OMA; AACSVDT; -. DR OrthoDB; EOG6SJJMS; -. DR BioCyc; HPY:HP1188-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008592; DUF874. DR Pfam; PF05917; DUF874; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 27 50 {ECO:0000256|SAM:Coils}. FT COILED 77 122 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 269 AA; 30632 MW; 592871F34BCF3CE1 CRC64; MKRVRELVKK HPEKSSVALV VLTHAACKKA KELDDKVQDK SKQAEKENQI NWWKYSGLTI ATSLLLAACS VGDIDKQIEL EQEKKEAENA RDRANKSGIE LEQEKQKTIK EQKDLVKKAE QNCQENHGQF FMKKLGIKGG IAIEVEAECK TPKPAKTNQT PIQPKHLPNS KQPHSQRGSK AQELIAYLQK ELESLPYSQK AIAKQVNFYR PSSVAYLELD PRDFKVTEEW QKENLKIRSK AQAKMLGNEK PTSPPFNLSK PFVRSKNIC // ID O25710_HELPY Unreviewed; 228 AA. AC O25710; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08124.1}; GN OrderedLocusNames=HP_1078 {ECO:0000313|EMBL:AAD08124.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08124.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08124.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08124.1; -; Genomic_DNA. DR PIR; F64654; F64654. DR RefSeq; NP_207869.1; NC_000915.1. DR RefSeq; WP_000763834.1; NC_018939.1. DR ProteinModelPortal; O25710; -. DR STRING; 85962.HP1078; -. DR PaxDb; O25710; -. DR EnsemblBacteria; AAD08124; AAD08124; HP_1078. DR GeneID; 899614; -. DR KEGG; heo:C694_05570; -. DR KEGG; hpy:HP1078; -. DR PATRIC; 20593495; VBIHelPyl33062_1127. DR eggNOG; ENOG4106FCG; Bacteria. DR eggNOG; ENOG410Y5CT; LUCA. DR OMA; LIIFDAD; -. DR OrthoDB; EOG6W45SD; -. DR BioCyc; HPY:HP1078-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR006171; Toprim_domain. DR PROSITE; PS50880; TOPRIM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 94 Toprim. {ECO:0000259|PROSITE:PS50880}. SQ SEQUENCE 228 AA; 27122 MW; 8F467DD2A9F489EC CRC64; MADKEILIFV EGPSDKVFLE VYLYFLERFP IKNFKVQNVD GKDNLSKRLL EIEKYDKTLI IFDADKDYES NKKEILKIVS ESKQTISEEQ IFLFPNNQDD GDLETLLLKI ANHKEFINCF ESYLDCIKKK EHYKPIKNIR KSKWYAYLEA LGLEKFFQYT WDTKKKNNKK KLIIDDKDGD EIEIKDQYKG DYEELKKVLD LNSKSLIPLK NFLGQFAENN QKTNPKIF // ID O25244_HELPY Unreviewed; 246 AA. AC O25244; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07576.1}; GN OrderedLocusNames=HP_0503 {ECO:0000313|EMBL:AAD07576.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07576.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07576.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07576.1; -; Genomic_DNA. DR PIR; G64582; G64582. DR ProteinModelPortal; O25244; -. DR STRING; 85962.HP0503; -. DR REBASE; 17367; M.HpyAORF503P. DR PaxDb; O25244; -. DR PRIDE; O25244; -. DR EnsemblBacteria; AAD07576; AAD07576; HP_0503. DR PATRIC; 20592281; VBIHelPyl33062_0529. DR OMA; PYNDRTS; -. DR OrthoDB; EOG61KBDH; -. DR BioCyc; HPY:HP0503-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 246 AA; 29043 MW; 46D7F57F3F8F27C9 CRC64; MGNPPYNDRT SFIKQDIKNK DFIFEIDHHL KSRDLGISFL KSFAILKPAF ICVLHPLSYL IKEANFKQLK LFKDHYRLLD ALVVSSKSFT KSNEFPIVIA LYERGRMDYA EIRRFVFPTD CDTTLCLNDF DYIANYVDKY PNAKKVGACV GYFFPMRDIN ALKRNKTFLN APSTNVVRIS QDKLIYYQYI HYFKEIAPKI PYYFGNLDII IDCFAFLEIK DAFLKDKRAR LEYFKKLFQG HPCEFD // ID O25333_HELPY Unreviewed; 79 AA. AC O25333; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07679.1}; GN OrderedLocusNames=HP_0612 {ECO:0000313|EMBL:AAD07679.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07679.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07679.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07679.1; -; Genomic_DNA. DR PIR; D64596; D64596. DR RefSeq; WP_001853099.1; NC_018939.1. DR ProteinModelPortal; O25333; -. DR STRING; 85962.HP0612; -. DR PaxDb; O25333; -. DR EnsemblBacteria; AAD07679; AAD07679; HP_0612. DR KEGG; heo:C694_03165; -. DR PATRIC; 20592503; VBIHelPyl33062_0640. DR eggNOG; COG0842; LUCA. DR KO; K01992; -. DR OMA; TLFWTFI; -. DR OrthoDB; EOG69PQ1C; -. DR BioCyc; HPY:HP0612-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 69 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 79 AA; 8880 MW; D00F42744884956E CRC64; MGAILSILKL EIKSYLTNTS ALFWTFIYPI LMLLLLIFVF SKNTTEIFYF NNIIGLMGLL IISSAIFGLT QAITSLRIA // ID O25785_HELPY Unreviewed; 248 AA. AC O25785; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 114. DE SubName: Full=Glutamine ABC transporter, ATP-binding protein (GlnQ) {ECO:0000313|EMBL:AAD08217.1}; GN OrderedLocusNames=HP_1171 {ECO:0000313|EMBL:AAD08217.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08217.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08217.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08217.1; -; Genomic_DNA. DR PIR; C64666; C64666. DR RefSeq; NP_207962.1; NC_000915.1. DR RefSeq; WP_000111351.1; NC_018939.1. DR ProteinModelPortal; O25785; -. DR SMR; O25785; 1-240. DR STRING; 85962.HP1171; -. DR PaxDb; O25785; -. DR EnsemblBacteria; AAD08217; AAD08217; HP_1171. DR GeneID; 899931; -. DR KEGG; heo:C694_06050; -. DR KEGG; hpy:HP1171; -. DR PATRIC; 20593695; VBIHelPyl33062_1226. DR eggNOG; ENOG4105CDA; Bacteria. DR eggNOG; COG1126; LUCA. DR KO; K02028; -. DR OMA; IDERGIW; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP1171-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0015424; F:amino acid-transporting ATPase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR030679; ABC_ATPase_HisP-typ. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR PIRSF; PIRSF039085; ABC_ATPase_HisP; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD08217.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD08217.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 239 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 248 AA; 28124 MW; 62AD11C44453F464 CRC64; MSVILETKGL KKTYQNHLVL DGINFTLNKG EVAVILGPSG CGKSTFLKCL NGLEKINEGE ILFENTNLNN KATNWNQMRQ KIGMVFQNYE LFPHLNVLDN ILLAPMKVQK RSKDEVISQA IELLKRVGLE HKQQAYPKEL SGGQKQRVAI VRSLCMRPKI MLFDEVTASL DPEMVKEVLE VILELATTGM SMVIVTHEMK FAQKIAHKIV FFDSGKIAEE NNAKEFFNHP KSQRAQKFLE TFHFLGSC // ID O25497_HELPY Unreviewed; 216 AA. AC O25497; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 120. DE SubName: Full=Osmoprotection protein (ProV) {ECO:0000313|EMBL:AAD07867.1}; GN OrderedLocusNames=HP_0819 {ECO:0000313|EMBL:AAD07867.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07867.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07867.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07867.1; -; Genomic_DNA. DR PIR; C64622; C64622. DR RefSeq; NP_207612.1; NC_000915.1. DR RefSeq; WP_000659451.1; NC_018939.1. DR ProteinModelPortal; O25497; -. DR DIP; DIP-3528N; -. DR IntAct; O25497; 3. DR MINT; MINT-165291; -. DR STRING; 85962.HP0819; -. DR PaxDb; O25497; -. DR EnsemblBacteria; AAD07867; AAD07867; HP_0819. DR GeneID; 899360; -. DR KEGG; heo:C694_04195; -. DR KEGG; hpy:HP0819; -. DR PATRIC; 20592925; VBIHelPyl33062_0851. DR eggNOG; COG1125; LUCA. DR KO; K05847; -. DR OMA; NNITRSI; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0819-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 215 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 216 AA; 24045 MW; 401E8CF9F975987E CRC64; MKEIVTIENV SFNYHNRAVF KDFNLSIQEG DFLCVLGESG SGKSTLLGLI LGLLKPSLGS VKIFNETLSN NAFLRQKIGY IAQGNSLFSH LNAMQNMTFC LNLQGINKQA AQKEAKALAL KMGLDESLMD KFPNELSGGQ AQRVGIIRGI IHRPELILLD EPFSALDSFN RKNLQDLIKE IHQNSHATFI MVTHDESEAQ KLATKTLEIK ALKQEQ // ID O26054_HELPY Unreviewed; 250 AA. AC O26054; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 87. DE SubName: Full=Exodeoxyribonuclease (LexA) {ECO:0000313|EMBL:AAD08563.1}; GN OrderedLocusNames=HP_1526 {ECO:0000313|EMBL:AAD08563.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08563.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08563.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08563.1; -; Genomic_DNA. DR PIR; F64710; F64710. DR RefSeq; NP_208316.1; NC_000915.1. DR RefSeq; WP_000767556.1; NC_018939.1. DR ProteinModelPortal; O26054; -. DR STRING; 85962.HP1526; -. DR PaxDb; O26054; -. DR EnsemblBacteria; AAD08563; AAD08563; HP_1526. DR GeneID; 899765; -. DR KEGG; heo:C694_07905; -. DR KEGG; hpy:HP1526; -. DR PATRIC; 20594471; VBIHelPyl33062_1604. DR eggNOG; ENOG4105CGK; Bacteria. DR eggNOG; COG0708; LUCA. DR KO; K01142; -. DR OMA; YTPNSQQ; -. DR OrthoDB; EOG6TBHJS; -. DR BioCyc; HPY:HP1526-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004519; F:endonuclease activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 3.60.10.10; -; 1. DR InterPro; IPR004808; AP_endonuc_1. DR InterPro; IPR020847; AP_endonuclease_F1_BS. DR InterPro; IPR020848; AP_endonuclease_F1_CS. DR InterPro; IPR005135; Endo/exonuclease/phosphatase. DR PANTHER; PTHR22748; PTHR22748; 1. DR Pfam; PF03372; Exo_endo_phos; 1. DR SUPFAM; SSF56219; SSF56219; 1. DR TIGRFAMs; TIGR00633; xth; 1. DR PROSITE; PS00726; AP_NUCLEASE_F1_1; 1. DR PROSITE; PS00728; AP_NUCLEASE_F1_3; 1. DR PROSITE; PS51435; AP_NUCLEASE_F1_4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 242 Endo/exonuclease/phosphatase. FT {ECO:0000259|Pfam:PF03372}. SQ SEQUENCE 250 AA; 29325 MW; 4892333C14542E2A CRC64; MKLISWNVNG LRACMTKGFM DFFNSVDADV FCIQESKMQQ EQNTFEFKGY FDFWNCAIKK GYSGVVTFTK KEPLSVSYGI NMEEHDKEGR VITCEFESFY LVNVYTPNSQ QALSRLSYRM SWEVEFKKFL KALELKKPVI VCGDLNVAHN EIDLENPKTN RKNAGFSDEE REKFSELLNA GFIDTFRYFY PNKEKAYTWW SYMQQARDKN IGWRIDYFLC SNPLKTRLKD ALIYKDILGS DHCPVGLELV // ID O24910_HELPY Unreviewed; 40 AA. AC O24910; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07160.1}; GN OrderedLocusNames=HP_0081 {ECO:0000313|EMBL:AAD07160.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07160.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07160.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07160.1; -; Genomic_DNA. DR PIR; A64530; A64530. DR RefSeq; NP_206881.1; NC_000915.1. DR RefSeq; WP_001132176.1; NC_018939.1. DR STRING; 85962.HP0081; -. DR PaxDb; O24910; -. DR EnsemblBacteria; AAD07160; AAD07160; HP_0081. DR GeneID; 899982; -. DR KEGG; heo:C694_00395; -. DR KEGG; hpy:HP0081; -. DR PATRIC; 20591371; VBIHelPyl33062_0086. DR OrthoDB; EOG6R5CF6; -. DR BioCyc; HPY:HP0081-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 40 AA; 4631 MW; 6B84F93EB8FA21EE CRC64; MPMQALKSKA FRVSIQWNAL VRKLLALERG GFNTKMILLR // ID O25171_HELPY Unreviewed; 389 AA. AC O25171; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 96. DE SubName: Full=Cyclopropane fatty acid synthase (Cfa) {ECO:0000313|EMBL:AAD07482.1}; GN OrderedLocusNames=HP_0416 {ECO:0000313|EMBL:AAD07482.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07482.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07482.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07482.1; -; Genomic_DNA. DR PIR; H64571; H64571. DR RefSeq; NP_207214.1; NC_000915.1. DR RefSeq; WP_000623798.1; NC_018939.1. DR ProteinModelPortal; O25171; -. DR DIP; DIP-3430N; -. DR IntAct; O25171; 3. DR MINT; MINT-167571; -. DR STRING; 85962.HP0416; -. DR PaxDb; O25171; -. DR EnsemblBacteria; AAD07482; AAD07482; HP_0416. DR GeneID; 900180; -. DR KEGG; heo:C694_02120; -. DR KEGG; hpy:HP0416; -. DR PATRIC; 20592083; VBIHelPyl33062_0431. DR eggNOG; ENOG4105CV9; Bacteria. DR eggNOG; COG2230; LUCA. DR KO; K00574; -. DR OMA; WGYLSIK; -. DR OrthoDB; EOG6BGNZP; -. DR BioCyc; HPY:HP0416-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008610; P:lipid biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003333; Mycolic_cyclopropane_synthase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02353; CMAS; 1. DR PIRSF; PIRSF003085; CMAS; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 101 370 SAM-dependent_MTases. FT {ECO:0000259|Pfam:PF02353}. FT ACT_SITE 356 356 {ECO:0000256|PIRSR:PIRSR003085-1}. SQ SEQUENCE 389 AA; 45448 MW; 0A8A97EF8988DF74 CRC64; MISKFLLKSM FKQWKNGDYQ VVFWDNSVYR NGEHSPKFTL KIHRPLKFSD IKKDMSLTIA EAYMDGVIDI EGSMDEVMHS LYLQTNYEHL HKHDNAKAIQ KPIKESSNIS KHYDLGNDFY SIWLDETLSY SCAYFKKDDD TLHAAQLQKL DHTLKKLHLK PGEKLLDIGC GWGYLSVKAA QEYGAEVMGI TISSEQYKQA NKRVQELGLE DKVTIKLLNY QDLDGRLYRF DKVVSVGMFE HVGKDNLPFY FKKVKEVLKR GGMFLLHSIL CCFEGKTNAW VDKYIFPGGY LPSLREVMSV MSECDFHLLM AESLRIHYAK TLDIWRNNFN HNLDQVKRLS YDERFIRMWD LYLRTCASAF RVGSADLFQL LLTNSVDNTF PLTKEYIYQ // ID O25203_HELPY Unreviewed; 150 AA. AC O25203; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07534.1}; GN OrderedLocusNames=HP_0456 {ECO:0000313|EMBL:AAD07534.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07534.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07534.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07534.1; -; Genomic_DNA. DR PIR; H64576; H64576. DR RefSeq; NP_207254.1; NC_000915.1. DR RefSeq; WP_010875490.1; NC_018939.1. DR ProteinModelPortal; O25203; -. DR STRING; 85962.HP0456; -. DR PaxDb; O25203; -. DR EnsemblBacteria; AAD07534; AAD07534; HP_0456. DR GeneID; 899246; -. DR KEGG; heo:C694_02325; -. DR KEGG; hpy:HP0456; -. DR PATRIC; 20592177; VBIHelPyl33062_0477. DR OMA; QVVNEEN; -. DR OrthoDB; EOG6RZBCK; -. DR BioCyc; HPY:HP0456-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 150 AA; 17739 MW; FBA4B3F4721F3662 CRC64; MIKLILHKKS IQIDETLLNV KEHLEKFYSN KEQETIAQTL ENETEISCSY FWDKDFLLLE QLLENNLGHF TFESEFALLK DKETLNLSQI KQIGVLKVLT YEMIQTLKNQ IIHLAQVVNE ENLEKDEELV VYHLNFTSRN NLTKYYPSSV // ID O25057_HELPY Unreviewed; 328 AA. AC O25057; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Heat shock protein B (IbpB) {ECO:0000313|EMBL:AAD07343.1}; GN OrderedLocusNames=HP_0280 {ECO:0000313|EMBL:AAD07343.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07343.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07343.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07343.1; -; Genomic_DNA. DR PIR; H64554; H64554. DR RefSeq; NP_207078.1; NC_000915.1. DR RefSeq; WP_000221211.1; NC_018939.1. DR ProteinModelPortal; O25057; -. DR DIP; DIP-3692N; -. DR IntAct; O25057; 3. DR MINT; MINT-185164; -. DR STRING; 85962.HP0280; -. DR PaxDb; O25057; -. DR EnsemblBacteria; AAD07343; AAD07343; HP_0280. DR GeneID; 899193; -. DR KEGG; heo:C694_01415; -. DR KEGG; hpy:HP0280; -. DR PATRIC; 20591787; VBIHelPyl33062_0291. DR eggNOG; ENOG4105D1S; Bacteria. DR eggNOG; COG1560; LUCA. DR KO; K02517; -. DR OMA; KTFDKRR; -. DR OrthoDB; EOG65XMZ0; -. DR BioCyc; HPY:HP0280-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:InterPro. DR InterPro; IPR004960; LipA_acyltrans. DR Pfam; PF03279; Lip_A_acyltrans; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Stress response {ECO:0000313|EMBL:AAD07343.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 44 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 328 AA; 38510 MW; 36816825181FAA09 CRC64; MTYKERLIHE KILKQDDKGF KTELRILSIF IVESLVNILG FILAKMPHSW FLRCIKAVAW LMKTFDKCRY FDAKANLDFV FGDSKSEEEK KRIIKKGYEN FAFIILETIR VIFIPKDEYD ARFTLINEEN VWKSLNKEGQ AITLCMHFGY WEAVGTTLAQ YYENYGRGCL GRLTKFAPIN HMIMSRREAF GVRFVNKIGA MKELIKMYNQ GNGLVGILVD QNVVPKDGVV VKFFDRDATH TTIASILSRR YNIDIQPVFI DFNDDYSHYT ATYYPSIRSQ ITDNAQNDIL ECTQAQASLC EEVIRNHPES YFWFHRRFKS THPEIYQR // ID O25934_HELPY Unreviewed; 160 AA. AC O25934; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Restriction modification system S subunit {ECO:0000313|EMBL:AAD08423.1}; GN OrderedLocusNames=HP_1383 {ECO:0000313|EMBL:AAD08423.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08423.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08423.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08423.1; -; Genomic_DNA. DR PIR; G64692; G64692. DR RefSeq; NP_208174.1; NC_000915.1. DR RefSeq; WP_010875618.1; NC_000915.1. DR ProteinModelPortal; O25934; -. DR STRING; 85962.HP1383; -. DR REBASE; 3796; S.HpyAORF1383P. DR PaxDb; O25934; -. DR PRIDE; O25934; -. DR EnsemblBacteria; AAD08423; AAD08423; HP_1383. DR GeneID; 900297; -. DR KEGG; hpy:HP1383; -. DR PATRIC; 20594155; VBIHelPyl33062_1448. DR eggNOG; COG0732; LUCA. DR KO; K01154; -. DR OrthoDB; EOG6VXF9N; -. DR BioCyc; HPY:HP1383-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 12 91 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 160 AA; 18194 MW; 80C943EE07099C80 CRC64; MFLASGVILV ILKEIATTNQ GFQSLIPLEK INNEFLYYLI LTLKNKLLKL ASGSTFLEVS PNKIKNLLIP LPPLNEQIAI ANILSDLDRY LYNLDALILK KESVKKALSF ELLSQRKRLK GFNQAWQRVR LGDIANYLMN PSKIARFLGG CKKRLNSFAR // ID O25412_HELPY Unreviewed; 114 AA. AC O25412; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07768.1}; GN OrderedLocusNames=HP_0708 {ECO:0000313|EMBL:AAD07768.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07768.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07768.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07768.1; -; Genomic_DNA. DR PIR; D64608; D64608. DR RefSeq; NP_207502.1; NC_000915.1. DR RefSeq; WP_001022706.1; NC_018939.1. DR ProteinModelPortal; O25412; -. DR IntAct; O25412; 2. DR STRING; 85962.HP0708; -. DR PaxDb; O25412; -. DR EnsemblBacteria; AAD07768; AAD07768; HP_0708. DR GeneID; 899318; -. DR KEGG; heo:C694_03645; -. DR KEGG; hpy:HP0708; -. DR PATRIC; 20592703; VBIHelPyl33062_0740. DR OMA; THSSNEK; -. DR OrthoDB; EOG6FBX1B; -. DR BioCyc; HPY:HP0708-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 62 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 73 97 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 114 AA; 13141 MW; D2F840A3CC2BBE1F CRC64; MNIKTHSSNE KERFVRIEED EKKGLFAGTA NENSHGLSLM ALIGVLVFGG AFLALLAPKI YLSNNIYYIS RKINTLEDQK RLLLEEQQIL KNELEKERFK YYIENSENIG DIAF // ID O25863_HELPY Unreviewed; 490 AA. AC O25863; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 110. DE RecName: Full=NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; DE EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445}; DE AltName: Full=NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; DE AltName: Full=NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; GN Name=nuoN {ECO:0000256|HAMAP-Rule:MF_00445}; GN OrderedLocusNames=HP_1273 {ECO:0000313|EMBL:AAD08317.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08317.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08317.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. The CC immediate electron acceptor for the enzyme in this species is CC believed to be ubiquinone. Couples the redox reaction to proton CC translocation (for every two electrons transferred, four hydrogen CC ions are translocated across the cytoplasmic membrane), and thus CC conserves the redox energy in a proton gradient. CC {ECO:0000256|HAMAP-Rule:MF_00445}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000256|HAMAP-Rule:MF_00445}. CC -!- SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits CC NuoA, H, J, K, L, M, N constitute the membrane sector of the CC complex. {ECO:0000256|HAMAP-Rule:MF_00445}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000256|HAMAP- CC Rule:MF_00445}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00445}. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU000320}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU000320}. CC -!- SIMILARITY: Belongs to the complex I subunit 2 family. CC {ECO:0000256|HAMAP-Rule:MF_00445}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08317.1; -; Genomic_DNA. DR PIR; A64679; A64679. DR RefSeq; NP_208065.1; NC_000915.1. DR RefSeq; WP_000904307.1; NC_018939.1. DR ProteinModelPortal; O25863; -. DR DIP; DIP-3755N; -. DR IntAct; O25863; 1. DR MINT; MINT-4073418; -. DR STRING; 85962.HP1273; -. DR PaxDb; O25863; -. DR EnsemblBacteria; AAD08317; AAD08317; HP_1273. DR GeneID; 899041; -. DR KEGG; heo:C694_06580; -. DR KEGG; hpy:HP1273; -. DR PATRIC; 20593923; VBIHelPyl33062_1332. DR eggNOG; ENOG4105CNR; Bacteria. DR eggNOG; COG1007; LUCA. DR KO; K00343; -. DR OMA; MLAIAWK; -. DR OrthoDB; EOG64JFNZ; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR HAMAP; MF_00445; NDH1_NuoN_1; 1. DR InterPro; IPR010096; NADH-Q_OxRdtase_suN/2. DR InterPro; IPR001750; ND/Mrp_mem. DR Pfam; PF00361; Proton_antipo_M; 1. DR TIGRFAMs; TIGR01770; NDH_I_N; 1. PE 3: Inferred from homology; KW Cell inner membrane {ECO:0000256|HAMAP-Rule:MF_00445}; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00445}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00445}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00445}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00445}; KW Quinone {ECO:0000256|HAMAP-Rule:MF_00445}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00445}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00445}; KW Transport {ECO:0000256|HAMAP-Rule:MF_00445}; KW Ubiquinone {ECO:0000256|HAMAP-Rule:MF_00445, KW ECO:0000313|EMBL:AAD08317.1}. FT TRANSMEM 18 38 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 45 65 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 80 100 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 108 128 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 133 153 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 167 187 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 209 229 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 250 270 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 277 297 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 305 325 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 333 353 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 381 401 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 415 435 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT TRANSMEM 462 482 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00445}. FT DOMAIN 130 427 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 490 AA; 55164 MW; F2C90C2CE4A677FF CRC64; MLIDSLHVSF DSFNFESILP MLVLVCGGIF TLLINAFTSR FSRNLNVFLC MLFLVLDFLV VLGLEEQENA FFGFLSLDTL SLISQSIVLI SAFLLIFLAL SKERFNEFQT AEFYSLYLFI VAGFQFMVSS NHLLLILIGL ETASLPLCVL MALSDKRYGL EAGIKYFTMG AMASAFFAMG AMAFYLLTGS LNLEVITLYL HTEGITNPML FAMGAIFLIG AIGFKVSLVP FHTWMPDVYE GNNPVFASYI SIVPKIAGFV VATRLFGAFI DTRTAWVEDI FYVLILMTIT IPNFIALWQE DVKRMLAYSS ISHSGFALAC VFIHTEDSQQ AMFVYWFMFA FTYIGAFGLL WLLKSREKTW DERYDHPYSK FNGLIKTHPL VAILGAIFVF GLAGIPPFSV FWGKFLAVES ALESNHILLA VVMLVNSAVA AFYYFRWLVA MFFNKPLQSY AQNDIYTQNA TMPIYAVIIA MALACLFSVF MMRGLLEFVA // ID O26053_HELPY Unreviewed; 211 AA. AC O26053; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08567.1}; GN OrderedLocusNames=HP_1525 {ECO:0000313|EMBL:AAD08567.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08567.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08567.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08567.1; -; Genomic_DNA. DR PIR; E64710; E64710. DR RefSeq; NP_208315.1; NC_000915.1. DR RefSeq; WP_000765634.1; NC_018939.1. DR ProteinModelPortal; O26053; -. DR STRING; 85962.HP1525; -. DR PaxDb; O26053; -. DR EnsemblBacteria; AAD08567; AAD08567; HP_1525. DR GeneID; 899766; -. DR KEGG; heo:C694_07900; -. DR KEGG; hpy:HP1525; -. DR PATRIC; 20594469; VBIHelPyl33062_1603. DR OMA; IKWPFAF; -. DR OrthoDB; EOG62VNK6; -. DR BioCyc; HPY:HP1525-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 211 AA; 24866 MW; FE28502E5004560D CRC64; MKLFSKDLFK KVTPLFLSVY FLNPTIMQAK SRFYVASQYQ VGKMIMKKYN DLKRTIEGAS FSLGWEINPT NYWFYSRYYF FMDYGNVILN KRTGAQANMF TYGFGGDLIV EYNKNPLYVF SLFYGMQVAE NTWTISKHSA NFIIDDWRSI QGFSLKTSNF RMLGLVGFKF QTVLFHHDAS IEVGIKWPFA FEYDSAFVRL FSVFISHTFY L // ID O25541_HELPY Unreviewed; 71 AA. AC O25541; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07929.1}; GN OrderedLocusNames=HP_0873 {ECO:0000313|EMBL:AAD07929.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07929.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07929.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07929.1; -; Genomic_DNA. DR PIR; A64629; A64629. DR RefSeq; NP_207667.1; NC_000915.1. DR RefSeq; WP_001206520.1; NC_018939.1. DR ProteinModelPortal; O25541; -. DR STRING; 85962.HP0873; -. DR PaxDb; O25541; -. DR EnsemblBacteria; AAD07929; AAD07929; HP_0873. DR GeneID; 899402; -. DR KEGG; heo:C694_04470; -. DR KEGG; hpy:HP0873; -. DR PATRIC; 20593035; VBIHelPyl33062_0905. DR OMA; MREIFEQ; -. DR OrthoDB; EOG64BQB7; -. DR BioCyc; HPY:HP0873-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 63 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 71 AA; 8705 MW; B335D5A27C451F97 CRC64; MREFFKKLGT EYASKLFLVY WLRWMLSALV MLPFMEIFYY FNFPLWLNLF LGQTIGAVIF FKLDKLIFSK K // ID O25462_HELPY Unreviewed; 24 AA. AC O25462; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07827.1}; GN OrderedLocusNames=HP_0767 {ECO:0000313|EMBL:AAD07827.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07827.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07827.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07827.1; -; Genomic_DNA. DR PIR; G64615; G64615. DR RefSeq; WP_010875543.1; NC_018939.1. DR IntAct; O25462; 8. DR STRING; 85962.HP0767; -. DR PaxDb; O25462; -. DR EnsemblBacteria; AAD07827; AAD07827; HP_0767. DR KEGG; heo:C694_03940; -. DR BioCyc; HPY:HP0767-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 24 AA; 2576 MW; 1ADA8D5B856AC5EB CRC64; MEKVLAFFSP SFFISSFSGG GGYL // ID O25545_HELPY Unreviewed; 57 AA. AC O25545; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07931.1}; GN OrderedLocusNames=HP_0878 {ECO:0000313|EMBL:AAD07931.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07931.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07931.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07931.1; -; Genomic_DNA. DR PIR; F64629; F64629. DR RefSeq; NP_207672.1; NC_000915.1. DR RefSeq; WP_010875555.1; NC_018939.1. DR ProteinModelPortal; O25545; -. DR STRING; 85962.HP0878; -. DR PaxDb; O25545; -. DR EnsemblBacteria; AAD07931; AAD07931; HP_0878. DR GeneID; 899407; -. DR KEGG; heo:C694_04495; -. DR KEGG; hpy:HP0878; -. DR PATRIC; 20593045; VBIHelPyl33062_0910. DR eggNOG; COG1432; LUCA. DR BioCyc; HPY:HP0878-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 57 AA; 6843 MW; 6FD0D7530F5A736B CRC64; MKANTIILVD WENFRRDIKQ TKCVNYNIAL DVIVTIRAFL LDDEWDQSYL LLYHPTL // ID O25400_HELPY Unreviewed; 454 AA. AC O25400; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07745.1}; GN OrderedLocusNames=HP_0693 {ECO:0000313|EMBL:AAD07745.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07745.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07745.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07745.1; -; Genomic_DNA. DR PIR; E64606; E64606. DR RefSeq; NP_207487.1; NC_000915.1. DR RefSeq; WP_000479410.1; NC_018939.1. DR ProteinModelPortal; O25400; -. DR DIP; DIP-3248N; -. DR IntAct; O25400; 1. DR MINT; MINT-167805; -. DR STRING; 85962.HP0693; -. DR PaxDb; O25400; -. DR EnsemblBacteria; AAD07745; AAD07745; HP_0693. DR GeneID; 898941; -. DR KEGG; heo:C694_03570; -. DR KEGG; hpy:HP0693; -. DR PATRIC; 20592671; VBIHelPyl33062_0724. DR eggNOG; ENOG4105CRW; Bacteria. DR eggNOG; COG2031; LUCA. DR KO; K02106; -. DR OMA; YSGFVIW; -. DR OrthoDB; EOG6DVJMZ; -. DR BioCyc; HPY:HP0693-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR006161; CHP00366. DR InterPro; IPR006160; SCFA_transpt_AtoE. DR Pfam; PF02667; SCFA_trans; 1. DR TIGRFAMs; TIGR00366; TIGR00366; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 22 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 76 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 96 126 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 193 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 253 271 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 277 293 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 314 334 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 354 379 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 431 453 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 454 AA; 49216 MW; 0517E3C42C6111D8 CRC64; MFLLRHLTSA CVFLASKCLP DSFVLVALLS FVVFVLVYCL TGQDAFSVIS SWGNGAWTLL GFSMQMALIL VLGQALANAK LVQKLLKYLA SLPKGYYTAL WLVTFLSLIA NWINWGFGLV ISAIFAKEIA KNVKGVDYRL LIASAYSGFV IWHGGLSGSI PLSVATQNEN LSKISAGVIE KAIPISQTIF SSYNLIIIGI ILVGLPFLMA MIHPKKEEIV EIDSKLLKDE YKEIELISHQ QDKTIAHFLE NSALLSYLLV FLGFGYLGVY FFKGGGISLN IVNTIFLFLG ILLHKTPLAY VKAIDRSARS VAGILLQFPF YAGIMGMMAS HSVGGHSLAQ MLSLAFTHIA NEKTFVLMTF LSAGIVNIFI PSGGGQWAIQ APIMLPAGQS LGVDPGVVSM AIAWGDAWTN MIQPFWALPA LAIAGLGAKD IMGYCVLTLI FVGLVVCGVF YFLV // ID O25789_HELPY Unreviewed; 435 AA. AC O25789; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08220.1}; GN OrderedLocusNames=HP_1175 {ECO:0000313|EMBL:AAD08220.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08220.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08220.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08220.1; -; Genomic_DNA. DR PIR; G64666; G64666. DR RefSeq; NP_207966.1; NC_000915.1. DR RefSeq; WP_000505472.1; NC_018939.1. DR ProteinModelPortal; O25789; -. DR STRING; 85962.HP1175; -. DR PaxDb; O25789; -. DR DNASU; 899935; -. DR EnsemblBacteria; AAD08220; AAD08220; HP_1175. DR GeneID; 899935; -. DR KEGG; heo:C694_06070; -. DR KEGG; hpy:HP1175; -. DR PATRIC; 20593703; VBIHelPyl33062_1230. DR eggNOG; ENOG4105C7N; Bacteria. DR eggNOG; COG2252; LUCA. DR KO; K06901; -. DR OMA; MVDFFDT; -. DR OrthoDB; EOG6DNT97; -. DR BioCyc; HPY:HP1175-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005345; F:purine nucleobase transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR029940; AzgA. DR InterPro; IPR006043; Xant/urac/vitC. DR PANTHER; PTHR11119; PTHR11119; 1. DR PANTHER; PTHR11119:SF9; PTHR11119:SF9; 1. DR Pfam; PF00860; Xan_ur_permease; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 66 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 97 117 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 129 146 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 213 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 233 255 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 310 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 322 343 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 350 369 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 381 404 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 416 434 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 435 AA; 46736 MW; 72FD6B96794AFFCE CRC64; MGFFKLKEHN TNIATEFRAG LTTFITMIYI VPLNALILSQ ANMPYEALLS ATAIITILSS VFNGLWANTP IAMSVGLGLS AYFSFGLVQG LKLPWQSALG IVALSGAIFV ILSFTKFRSW VMRSIPSDLR RAVSAGIGAF IAFIGLKEMH IVVTHKATLV TLGDFGDPHV LLGVVGIILT FALYTLKIRG SFIIAVLITS ILAWVLKLAP YPSEFFSMPA SIGPIAFQLD FKGIFFDASG AFTLALVPVI ITFFVTDLFD SLGTLAGIGH KTDFFNDEEK NKELEKTLEA DAVASLGSAV VGVSTTTAFI ESASGVEEGG RTGLTAVFTG LFFVLTLFCL PLLKAIPSNA IYPVLVVVGV LMFSVLEGVN FKDMAISVST FLTVVMMPLT FSIADGLAFG FLSYSIIKLV QKDFKALNSG IIILCIISVS VFIFR // ID O25504_HELPY Unreviewed; 292 AA. AC O25504; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07884.1}; GN OrderedLocusNames=HP_0833 {ECO:0000313|EMBL:AAD07884.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07884.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07884.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07884.1; -; Genomic_DNA. DR PIR; A64624; A64624. DR RefSeq; NP_207626.1; NC_000915.1. DR RefSeq; WP_000480363.1; NC_018939.1. DR ProteinModelPortal; O25504; -. DR DIP; DIP-3697N; -. DR IntAct; O25504; 1. DR MINT; MINT-181234; -. DR STRING; 85962.HP0833; -. DR PaxDb; O25504; -. DR EnsemblBacteria; AAD07884; AAD07884; HP_0833. DR GeneID; 899071; -. DR KEGG; heo:C694_04270; -. DR KEGG; hpy:HP0833; -. DR PATRIC; 20592957; VBIHelPyl33062_0867. DR OMA; QEQENDG; -. DR OrthoDB; EOG6FJNC2; -. DR BioCyc; HPY:HP0833-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 292 AA; 33932 MW; 61DB22353A323493 CRC64; MFLVKKIGVV IVVLIGFLAC SQERFIQLQK KAQEQENDGS KRPSYVDSDY EVFSETIFLQ NMVYQPTEER DSFAQLTKDE NDSFNPETSV ILLNEPSDSD TKNPPLNQNE SNTNTANNDT KNPFLYKPKR KTKDPKLIEY SQQNFYPLKD GDIMMSKEGD QWLIEIKSKA LKRFLKDQND KDRQIQTFTF NDTKTQIAQF KGKISSYVYT TNNSDLSLRP FYESFLLEKK SDDFYTIGDK ALDAIEISKC QMVLKKHSTD KLDSQHKAIS IDLDFKKERF KSNTELFLEC QS // ID O24939_HELPY Unreviewed; 398 AA. AC O24939; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07196.1}; GN OrderedLocusNames=HP_0120 {ECO:0000313|EMBL:AAD07196.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07196.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07196.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07196.1; -; Genomic_DNA. DR PIR; H64534; H64534. DR RefSeq; NP_206920.1; NC_000915.1. DR RefSeq; WP_000446639.1; NC_018939.1. DR ProteinModelPortal; O24939; -. DR DIP; DIP-3718N; -. DR IntAct; O24939; 3. DR MINT; MINT-187548; -. DR STRING; 85962.HP0120; -. DR PaxDb; O24939; -. DR EnsemblBacteria; AAD07196; AAD07196; HP_0120. DR GeneID; 898840; -. DR KEGG; heo:C694_00595; -. DR KEGG; hpy:HP0120; -. DR PATRIC; 20591457; VBIHelPyl33062_0128. DR OrthoDB; EOG67MF0S; -. DR BioCyc; HPY:HP0120-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008592; DUF874. DR Pfam; PF05917; DUF874; 1. DR PIRSF; PIRSF015868; DUF874_HELPY; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 76 99 {ECO:0000256|SAM:Coils}. FT COILED 122 156 {ECO:0000256|SAM:Coils}. FT COILED 162 202 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 398 AA; 45264 MW; C6F92CA56AD41C0D CRC64; MESVKTGKTN KVGKNTEMAN TKANKETHFK QVSAITNIIR SVGGFFTKIA KRVRGLVKKH PKKSSAALVV LTHIACKKAK ELDDKVQDKS KQAEKENQIN WWKYSGLTIA ASLLLAACSA GDTDKQIELE QEKKEAENAR DRANKSGIEL EQERQKTNKS GIELANSQIK AEQERQKTEQ EKQKANKSAI ELEQQKQKTI NTQRDLIKEQ KDFIKETEQN CQENHNQFFI KKLGIKGGIA IEVEAECKTP KPAKTNQTPI QPKHLPNSKQ PHSQRGSKAQ EFIAYLQKEL EFLPYSQKAI AKQVNFYKPS SIAYLELDPR DFKVTEEWQK ENLKIRSKAQ AKMLEMRDLK PDPQAHLPTS QSLLFVQKIF ADVNKEIEAV ANTEKKAEKA GYGYSKRM // ID O26052_HELPY Unreviewed; 115 AA. AC O26052; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08566.1}; GN OrderedLocusNames=HP_1524 {ECO:0000313|EMBL:AAD08566.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08566.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08566.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08566.1; -; Genomic_DNA. DR PIR; D64710; D64710. DR RefSeq; NP_208314.1; NC_000915.1. DR RefSeq; WP_000837022.1; NC_018939.1. DR ProteinModelPortal; O26052; -. DR IntAct; O26052; 2. DR STRING; 85962.HP1524; -. DR PaxDb; O26052; -. DR EnsemblBacteria; AAD08566; AAD08566; HP_1524. DR GeneID; 899767; -. DR KEGG; heo:C694_07895; -. DR KEGG; hpy:HP1524; -. DR PATRIC; 20594467; VBIHelPyl33062_1602. DR OMA; SPLNRNY; -. DR OrthoDB; EOG6QCDFH; -. DR BioCyc; HPY:HP1524-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 44 73 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 115 AA; 13287 MW; 1B56AA20E27EBE9D CRC64; MKSKITHFIA ISFVLSLFSA CKDEPKKSSQ SHQNNTKITK NNPINQANND IRKIEHEEED EKATKEVNDL INNENKIDEI NNEENADPSQ KRTNNVLQRA TNHQDNLNSP LNRKY // ID O25790_HELPY Unreviewed; 34 AA. AC O25790; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08226.1}; GN OrderedLocusNames=HP_1176 {ECO:0000313|EMBL:AAD08226.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08226.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08226.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08226.1; -; Genomic_DNA. DR PIR; H64666; H64666. DR ProteinModelPortal; O25790; -. DR IntAct; O25790; 6. DR STRING; 85962.HP1176; -. DR PaxDb; O25790; -. DR PRIDE; O25790; -. DR EnsemblBacteria; AAD08226; AAD08226; HP_1176. DR BioCyc; HPY:HP1176-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 34 AA; 4070 MW; A3FE32ECC89999BA CRC64; MLSPFLIFHG KLLFRIYPHN RSYGAFVLQQ SFQI // ID O24926_HELPY Unreviewed; 368 AA. AC O24926; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07168.1}; GN OrderedLocusNames=HP_0100 {ECO:0000313|EMBL:AAD07168.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07168.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07168.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O34461:HP_0424; NbExp=3; IntAct=EBI-7494854, EBI-7506839; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07168.1; -; Genomic_DNA. DR PIR; D64532; D64532. DR RefSeq; NP_206900.1; NC_000915.1. DR RefSeq; WP_000905219.1; NC_018939.1. DR ProteinModelPortal; O24926; -. DR DIP; DIP-3170N; -. DR IntAct; O24926; 24. DR MINT; MINT-159805; -. DR STRING; 85962.HP0100; -. DR PaxDb; O24926; -. DR DNASU; 899118; -. DR EnsemblBacteria; AAD07168; AAD07168; HP_0100. DR GeneID; 899118; -. DR KEGG; heo:C694_00490; -. DR KEGG; hpy:HP0100; -. DR PATRIC; 20591411; VBIHelPyl33062_0105. DR eggNOG; ENOG4105WPN; Bacteria. DR eggNOG; COG1636; LUCA. DR KO; K09765; -. DR OMA; ARENELY; -. DR OrthoDB; EOG6S26FS; -. DR BioCyc; HPY:HP0100-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003828; DUF208. DR Pfam; PF02677; DUF208; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 368 AA; 42665 MW; A66F5FC730C883E6 CRC64; MLIHICCSVD NLYFLKKAKE AFAGEKIVGF FYNPNIHPYS EYLLRLEDVK RTCEMLGIEL LEGDYELEKF LDKAKGKELL GEKSERCFEC FDLRLEASAL KAFELGEEKF TTTLLTSPKK DPNQLIAKGQ SIAQRHNLEF VVFRNDNFEH FKSELDLNLQ ALARENELYR QNYCGCQFAL KIQKESQNRS PFELYSPLKR QILPASIEER TQVFRTLDMA KKDANKPFLA QKTIATYRLL NGGVWLSKNS NPLNCCILAR SKSKAKVRIN DLRWVFSQRL SVLVGYSQRD ETLFLTLEGL NTLMAKNYDN LKELNLNPLN YEEELSLRAL VSGSESINPI IVLEERTEKT LFVEIKSVFQ EEKVFYLL // ID O24984_HELPY Unreviewed; 180 AA. AC O24984; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07254.1}; GN OrderedLocusNames=HP_0184 {ECO:0000313|EMBL:AAD07254.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07254.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07254.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2ATZ} RP X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS), AND DISULFIDE BONDS. RA Chang C., Xu X., Savchenko A., Edwards A., Joachimiak A.; RT "Crystal structure of protein HP0184 from Helicobacter pylori."; RL Submitted (AUG-2005) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07254.1; -; Genomic_DNA. DR PIR; H64542; H64542. DR RefSeq; NP_206983.1; NC_000915.1. DR RefSeq; WP_000138087.1; NC_018939.1. DR PDB; 2ATZ; X-ray; 2.00 A; A=1-180. DR PDBsum; 2ATZ; -. DR ProteinModelPortal; O24984; -. DR SMR; O24984; 3-178. DR DIP; DIP-3264N; -. DR IntAct; O24984; 8. DR MINT; MINT-163122; -. DR STRING; 85962.HP0184; -. DR PaxDb; O24984; -. DR EnsemblBacteria; AAD07254; AAD07254; HP_0184. DR GeneID; 900139; -. DR KEGG; heo:C694_00915; -. DR KEGG; hpy:HP0184; -. DR PATRIC; 20591591; VBIHelPyl33062_0195. DR eggNOG; ENOG4108S9E; Bacteria. DR eggNOG; ENOG4111FMR; LUCA. DR OMA; ASWSKHM; -. DR OrthoDB; EOG6ZPSZV; -. DR BioCyc; HPY:HP0184-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR015061; DUF1882. DR Pfam; PF08966; DUF1882; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2ATZ}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 73 DUF1882. {ECO:0000259|Pfam:PF08966}. FT DISULFID 33 33 {ECO:0000213|PDB:2ATZ}. SQ SEQUENCE 180 AA; 21208 MW; 66AE579E0795BC36 CRC64; MTEMELKLIK IDTSHYFEKK PGLGERVDYA GRCFYNKFQR VNAMLTSSLI QKHLKREIEI AHNLILRNDK VENIVFDYNG RNPERFYHKA QLLLREEGFM NFTAYNTKTP GHLHLYVHKG HTELGEGERL VKTLSMKLAQ GLPKEWKVFP SNEWPKEFNI LALPYEVFAK ERGSSWAKHL // ID O25083_HELPY Unreviewed; 381 AA. AC O25083; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Nitrite extrusion protein (NarK) {ECO:0000313|EMBL:AAD07378.1}; GN OrderedLocusNames=HP_0313 {ECO:0000313|EMBL:AAD07378.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07378.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07378.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07378.1; -; Genomic_DNA. DR PIR; A64559; A64559. DR RefSeq; NP_207111.1; NC_000915.1. DR RefSeq; WP_001263616.1; NC_018939.1. DR ProteinModelPortal; O25083; -. DR IntAct; O25083; 1. DR STRING; 85962.HP0313; -. DR PaxDb; O25083; -. DR EnsemblBacteria; AAD07378; AAD07378; HP_0313. DR GeneID; 898783; -. DR KEGG; heo:C694_01580; -. DR KEGG; hpy:HP0313; -. DR PATRIC; 20591853; VBIHelPyl33062_0324. DR eggNOG; ENOG4108G2I; Bacteria. DR eggNOG; COG0477; LUCA. DR OMA; LPYVKEH; -. DR OrthoDB; EOG6MWN75; -. DR BioCyc; HPY:HP0313-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR010645; MFS_4. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF06779; MFS_4; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 41 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 72 93 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 99 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 157 177 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 222 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 234 254 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 284 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 313 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 325 346 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 352 373 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 378 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 381 AA; 41987 MW; D4323F053758C2F9 CRC64; MRVFVCFLGV FVSNGLARFG YVVLIPLLIL SGSLTPHQSF QLGIAVLMGY VFGSFLIQFL SPLMSLESIA KISFGLIALS FLVCYFDSIP FFWLWIWRFI AGVASSALMI LVAPLSLPYV KEHKKALVGG LIFSAVGIGS VFSGFVLPWI SSYNIKWAWI FLGGSCLIAF ILSLVGLKTR SLRKKSVKKE ESAFKIPFHL WLLLISCALN AIGFLPHTLF WVDYLIRHLN ISPTIAGTSW AFFGFGATLG SLISGPMAQK LGAKNANIFI LILKSIACFL PIFFHQISLL NLSIFIMGAA TTANINLFSM MALKIAGAKH FAQASSWVVF SFGIFQALFS YLFTIFLGDL GYVLIFVICG VCLVLSFIVL FPIKMQTAIH K // ID O25295_HELPY Unreviewed; 192 AA. AC O25295; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07639.1}; GN OrderedLocusNames=HP_0571 {ECO:0000313|EMBL:AAD07639.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07639.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07639.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07639.1; -; Genomic_DNA. DR PIR; C64591; C64591. DR RefSeq; NP_207366.1; NC_000915.1. DR RefSeq; WP_000393406.1; NC_018939.1. DR ProteinModelPortal; O25295; -. DR STRING; 85962.HP0571; -. DR PaxDb; O25295; -. DR EnsemblBacteria; AAD07639; AAD07639; HP_0571. DR GeneID; 900219; -. DR KEGG; heo:C694_02945; -. DR KEGG; hpy:HP0571; -. DR PATRIC; 20592415; VBIHelPyl33062_0596. DR eggNOG; ENOG4105KHU; Bacteria. DR eggNOG; COG0586; LUCA. DR OMA; MEEYIIN; -. DR OrthoDB; EOG6358BJ; -. DR BioCyc; HPY:HP0571-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032818; DedA. DR InterPro; IPR032816; SNARE_assoc. DR PANTHER; PTHR30353; PTHR30353; 1. DR Pfam; PF09335; SNARE_assoc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 16 35 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 68 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 184 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 192 AA; 22198 MW; D26FFCF9B35745C6 CRC64; MEEYIIDLWN QHAATWGYLI LFGWSILEGE IGLILAGIAS YTGHMHLGLA ILVAGIGGFV GDQIYFYIGR TNKAYIQKKL EKQRRKLALA HLLLQKHGWF IIFIQRYMYG MRTIIPISIG LTRYSALKFA IINLISAMVW ASITIILAWY LGEELLHALG WLKKHPYALI LLLVSFLALV LWYFQYYSKK NR // ID O25638_HELPY Unreviewed; 222 AA. AC O25638; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08035.1}; GN OrderedLocusNames=HP_0990 {ECO:0000313|EMBL:AAD08035.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08035.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08035.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08035.1; -; Genomic_DNA. DR PIR; F64643; F64643. DR RefSeq; WP_000882303.1; NC_018939.1. DR ProteinModelPortal; O25638; -. DR DIP; DIP-3613N; -. DR IntAct; O25638; 13. DR MINT; MINT-166704; -. DR STRING; 85962.HP0990; -. DR PaxDb; O25638; -. DR PRIDE; O25638; -. DR EnsemblBacteria; AAD08035; AAD08035; HP_0990. DR PATRIC; 20593305; VBIHelPyl33062_1034. DR OrthoDB; EOG6ZD67R; -. DR BioCyc; HPY:HP0990-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 222 AA; 26183 MW; 00DDB0DFD035B229 CRC64; MLCKMVNDSN YESEQALLAT GNSSEEQKRR FLLRVKKKVN DNRQLKKKLD PFLKRLDVLQ TEFGVTDPTA NHNKQGIHYC TENKKTGKCD PIDNVFRTTR LDNELEQEIQ TLTLDLTKAP NKDAQSQAYA NFNQRIKLLT LKYLKEITNQ MLFLNQTMAM QSEIMADDYF RQNNDGFGKE ENHIDKQLTQ KRINERERAR IYFQNPNVKF DQFGFPIFSI WD // ID O25063_HELPY Unreviewed; 2893 AA. AC O25063; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Toxin-like outer membrane protein {ECO:0000313|EMBL:AAD07355.1}; GN OrderedLocusNames=HP_0289 {ECO:0000313|EMBL:AAD07355.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07355.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07355.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC Self; NbExp=4; IntAct=EBI-7493139, EBI-7493139; CC O26067:HP_1542; NbExp=4; IntAct=EBI-7493139, EBI-7644202; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07355.1; -; Genomic_DNA. DR PIR; A64556; A64556. DR RefSeq; NP_207087.1; NC_000915.1. DR RefSeq; WP_000713712.1; NC_018939.1. DR ProteinModelPortal; O25063; -. DR DIP; DIP-3227N; -. DR IntAct; O25063; 14. DR MINT; MINT-162201; -. DR STRING; 85962.HP0289; -. DR PaxDb; O25063; -. DR EnsemblBacteria; AAD07355; AAD07355; HP_0289. DR GeneID; 899197; -. DR KEGG; heo:C694_01460; -. DR KEGG; hpy:HP0289; -. DR PATRIC; 20591805; VBIHelPyl33062_0300. DR eggNOG; COG5651; LUCA. DR OMA; FNNANFN; -. DR OrthoDB; EOG6RVFRD; -. DR BioCyc; HPY:HP0289-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR InterPro; IPR005546; Autotransporte_beta. DR InterPro; IPR004311; Vacuolating_cytotoxin_put. DR Pfam; PF03077; VacA2; 3. DR SMART; SM00869; Autotransporter; 1. DR SUPFAM; SSF103515; SSF103515; 1. DR PROSITE; PS51208; AUTOTRANSPORTER; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2620 2893 Autotransporter (TC 1.B.12). FT {ECO:0000259|PROSITE:PS51208}. SQ SEQUENCE 2893 AA; 311288 MW; A319D9CFC73BB27D CRC64; MKKFKKKPKS IKRSHQNQKT ILKRPLWLMP LLISGFASGV YANNLWDLLN PKVGGEYVHW VKGSQYCAWW EFAGCLKNVW GANHKGYDAG NAANYLSSQN YQAISVGSGN ETGTYSLSGF TNYVGGNLTI NLGNSVVLDL SGSNSFTSYQ GYNQGKDDVT FTVGAINLNG TLEVGNRVGS GAGTHTGTAT LNLNANKVNI NSNINAYKTS QVNIGNANSV ITIGSVSLSG DVCSSLASVG IGANCSTSGP SYSFKGTTNA TNTAFSNASG SFTFEENATF SGAKWNGGTY TFNKEFSATN NTAFSSGSFN FKGVSSFNGT SFSNASYTFD NQATFQNSSF NGGTFTFNNQ TNPTNNAQHP QIQNSSFSGN ATTLKGFVNF QQAFNNSNHQ LTIQNASFNN ATFNNTGKIT IEKDASFNNT TFNTSVDTNN MSVTGGVTLS GKNDLKNGST LDFGSSKITL AQGTTFNLTS LGSEKSVTIL NSSGGITYSN LLNHAINGLT SALKTNESLS NPQSFAQGLW DIITYNGVTG QLLNENAATS KPTDSSPSKS STNSTQVYQV GYKIGDTIYK LQETFSHNSI IIQALESGTY TPPPVINGSK FDLSASNYIN ADMPWYDHKY YIPKSQNFTE SGTYYLPSVQ IWGSYTNSFK QTFSANGSNL VIGYNSTWTD HNVSSSGTVS FGDTSGSALN GHCGPWPYYQ CTGTTNGTYS AYHVYITANL RSGNRIGTGG AANLIFNGVD SINIANATIT QHNAGIYSSS MTFSTQSMDN SQNLNGLNSN GKLSVYGTTF TNEAKDGKFI FNAGQAVFEN TNFNGGSYQF SGDSLNFSNN NQFNSGSFEI SAKNASFNNA NFNNSASFNF NNSNATTSFV GDFTNANSNL QIAGNAVFGN STNGSQNTAN FNNTGSVNIS GNATFDNVVF NGPTNTSVKG QVTLNNITLK NLNAPLSFGD GTITFNAHSV INIAESITNG NPITLVSSSK EIEYNNAFSK NLWQLINYQG HGASSEKLVS SAGNGVYDVV YSFNNQTYNF QEVFSQNSIS IRRLGVNMVF DYVDMEKSDH LYYQNALGFM TYMPNSYNNN LGNANNTIYY YDKSIDFYAS GKTLFTKAEF SQTFTGQNSA IVFGAKSIWT SLSDAPQSNT IIRFGDNKGA GSNDASGHCW NLQCIGFITG HYEAQKIYIT GSIESGNRIS SGGGASLNFN GLQGILLTNA TLYNRAAGTQ SSSMNFISNS ANIQAQNSYF IDDTAQNGGN PNFSFNALNL DFSNSSFRGY VGKTQSVFKF NAKNAISFTN STNLSSGLYQ MQAKSVLFDN SNLSVSVGTS SIKANAINLS QNASINASNH STLELQGDLN VNDTSSLNLN QSTINVSNNA TINDYASLIA SNGSHLNFNG AVNFNSANIT TSLNNSSIVF KGAVSLGGQF NLSNNSSLDF QGSSAITSNT AFNFYDNAFS QSPITFHQAL DIKAPLSLGG NLLNPNNSSV LDLKNSQLVF GDQGSLNIAN IDLLSDLNDN KNRVYNIIQA DMNSNWYERI SFFGMHINDG IYDAKNQTYS FTNPLNNALK ITESFKDNQL SVTLSQIPGI KNTLYNIGSE IFNYQKVYNN ANGVYSYSDD AQGVFYLTSN VKGYYNPNQS YQASGSNNTT KNNNLTSESS IISQTYNAQG NPISALHIYN KGYNFNNIKA LGQMALKLYP EIKKVLGNDF SPSSLNALNS NALNQLTKLI TPNDWKNINE LIDNANNSVV QNFNNGTLIV GATQIGQTDT NSAVVFGGLG YQTPCDYTDI VCQKFRGTYL GQLLESSSAD LGYIDTTFNA KEIYLTGTLG SGNAWGTGGS ASVTFNSQTS LILNQANIVS SQTDGIFSML GQEGINKVFN QAGLANILGE VAVQSINKAG GLGNLIVNTL GSNSVIGGYL TPEQKNQTLS QLLGQNNFDN LMNDSGLNTA IKDLIRQKLG FWTGLVGGLA GLGGIDLQNP EKLIGSMSIN DLLSKKGLFN QITGFISAND IGQVISVMLQ DIVKPSNALK NDVAALGKQM IGEFLGQDTL NSLESLLQNQ QIKSVLDKVL AAKGLGPIYE QGLGDLIPNL GKKGLFAPYG LSQVWQKGDF SFNAQGNVFV QNSTFSNANG GTLSFNAGNS LIFAGNNHIA FTNHAGTLQL LSDQVSNINI TTLNASNGLK INAANNNVSV SQGNLFVSAS CAQQSDPTTA NIANPCALSA QSTNGASSNN ASNNAPIALS NNDESLMVAA NDFNFSGNIY ANGVVDFSKI KGSANIKNLY LYNNAQFQAN NLTISNQAVL EKNASFVTNN LNIQGAFNNN ATQKIEVLQN LVIASNASLS TGIYGLEVGG ALNNSGAIHF NLENTQTPTP LIQAEGIINL NTTQTPFMNV NNSMANNTTY TLLKSSRYID YNINPNSLQS YLNLYTLINI NGNHIEEKNG ALTYLGQRVL LQDKGLLLSV ALPNSNNASQ NNILSLSVLY NQVKMSCGDK AMDFTPPTLQ DYIVGIQGQS ALNQIEAVGG NAIKWLSTLM METKENPFFA PIYLKNHSLN EILGVTKDLQ NTASLISNPN FRDNATNLLE LASYTQQTSR LTKLSDFRSR EGESDFSLLE LKNKRFSDPN PEVFVKYSQL SKHPNNLWVQ GVGGASFISG GNGTLYGLNA GYDRLVKNVI LGGYVAYGYS DFNGNIMHSL GNNVDVGMYA RAFLKRNEFT LSANETYGGN ATSINSSNSL LSVLNQRYNY NTWTTSVNGN YGYDFMFKQK SVVLKPQVGL SYHFIGLSGM KGNDAAYKQF LMHSNPSNES VLTLNMGLES RKYFGKNSYY FVTARLGRDL LIKSKGSNTV RFVGENTLLY RKGEVFNTFA SVITGGEMHL WRLVYVNAGV GLKMGLQYQD INITGNVGMR VAF // ID O24967_HELPY Unreviewed; 372 AA. AC O24967; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase (RfaJ) {ECO:0000313|EMBL:AAD07221.1}; GN OrderedLocusNames=HP_0159 {ECO:0000313|EMBL:AAD07221.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07221.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07221.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07221.1; -; Genomic_DNA. DR PIR; G64539; G64539. DR RefSeq; NP_206958.1; NC_000915.1. DR RefSeq; WP_000022419.1; NC_018939.1. DR ProteinModelPortal; O24967; -. DR STRING; 85962.HP0159; -. DR CAZy; GT8; Glycosyltransferase Family 8. DR PaxDb; O24967; -. DR EnsemblBacteria; AAD07221; AAD07221; HP_0159. DR GeneID; 899141; -. DR KEGG; heo:C694_00795; -. DR KEGG; hpy:HP0159; -. DR PATRIC; 20591539; VBIHelPyl33062_0169. DR eggNOG; COG1442; LUCA. DR KO; K03279; -. DR OMA; YSKEWHE; -. DR OrthoDB; EOG6TJ7V7; -. DR BioCyc; HPY:HP0159-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR002495; Glyco_trans_8. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01501; Glyco_transf_8; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07221.1}. SQ SEQUENCE 372 AA; 43715 MW; A0EA687DAE6BC125 CRC64; MSIIIPIVIA FDNHYAMPAG VSLYSMLACA KTEHPQSQND SEKLFYKIHC LVDNLSLENQ SKLKETLAPF SAFSSLEFLD ISTPNLHATP IEPSAIDKIN EAFLQLNIYA KTRFSKMVMC RLFLASLFPQ YDKIIMFDAD TLFLNDVSES FFIPLDGYYF GAAKDFASDK SPKHFQIVRE KDPRQAFSLY EHYLNESDMQ IIYESNYNAG FLVVNLKLWR ADHLEERLLN LTHQKGQCVF YPEQDLLTLA CYQKVLILPY IYNTHPFMAN QKRFIPDKKE IVMLHFYFVG KPWVLPTFSY SKEWHETLLK TPFYAEYSVK FLKQMTECLS LKDKQKTFEF LAPLLNKKTL LEYVFFRLNR IFKRLKEKFF NS // ID O25223_HELPY Unreviewed; 545 AA. AC O25223; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Adenine specific DNA methyltransferase (VSPIM) {ECO:0000313|EMBL:AAD07545.1}; GN OrderedLocusNames=HP_0478 {ECO:0000313|EMBL:AAD07545.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07545.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07545.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07545.1; -; Genomic_DNA. DR PIR; F64579; F64579. DR RefSeq; NP_207276.1; NC_000915.1. DR RefSeq; WP_001139725.1; NC_018939.1. DR ProteinModelPortal; O25223; -. DR STRING; 85962.HP0478; -. DR REBASE; 56852; M.Hpy26695ORF2450P. DR PaxDb; O25223; -. DR EnsemblBacteria; AAD07545; AAD07545; HP_0478. DR GeneID; 899252; -. DR KEGG; heo:C694_02450; -. DR KEGG; hpy:HP0478; -. DR PATRIC; 20592227; VBIHelPyl33062_0502. DR eggNOG; ENOG4107T9T; Bacteria. DR eggNOG; COG0827; LUCA. DR KO; K00571; -. DR OMA; IVYKFIS; -. DR OrthoDB; EOG69SK6S; -. DR BioCyc; HPY:HP0478-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR025931; TaqI_C. DR Pfam; PF02384; N6_Mtase; 1. DR Pfam; PF12950; TaqI_C; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07545.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07545.1}. FT DOMAIN 93 312 N6_Mtase. {ECO:0000259|Pfam:PF02384}. FT DOMAIN 388 501 TaqI_C. {ECO:0000259|Pfam:PF12950}. SQ SEQUENCE 545 AA; 63177 MW; 7752822ABB9C671E CRC64; MPSNALLIEE ITHLINVSHS SVHNWIKTNL LEKLEIDHKI YVKTSSFLDF CRNHLGKNKL NKYANKSLKG VHNHQELILK YLEILENSSD LEKLGSYYEE ELSNATRNLE GIYYTPNRIV EQLFTLPKDF DVSQAIFCDP AVGSGNFIMH ALKLGFKVEN IYGYDTDAFA VALTKKRIKE RYHLDCLNIV QKDFLNLKHT PQFDCIFTNP PWGKKYNQNQ KENFKQQFNL SQSLDSASLF FIASLNCLKE NAHLGLLLPE SCLNIDAFKK MREMALKFHI RSLIDFDKPF KNLMTKAVGL ALKKTPNKDQ KISCFYQNSK FKRSPSSFFN NPKKIFNIHC SSKENKILDH LFSLPHMTLK NNAHFALGIV TGNNKEKLHP KQEKNTIPIF RGSDILKDGL KAPSQFINAG LKDCQQVAPL SLYQAREKIV YKFISSKLVF FYDNKQRLFL NSANMFVLKE NFPINAHALK ELLNSDLMQF IFESLFKTHK ILRKDLECLP LFVQFINDNF DEKFYLKNLG IEKKDPKHFT IRKNHACCLS FGFRG // ID O25445_HELPY Unreviewed; 268 AA. AC O25445; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Cell division membrane protein (FtsX) {ECO:0000313|EMBL:AAD07798.1}; GN OrderedLocusNames=HP_0749 {ECO:0000313|EMBL:AAD07798.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07798.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07798.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07798.1; -; Genomic_DNA. DR PIR; E64613; E64613. DR RefSeq; NP_207542.1; NC_000915.1. DR RefSeq; WP_001094195.1; NC_018939.1. DR ProteinModelPortal; O25445; -. DR STRING; 85962.HP0749; -. DR PaxDb; O25445; -. DR EnsemblBacteria; AAD07798; AAD07798; HP_0749. DR GeneID; 900019; -. DR KEGG; heo:C694_03855; -. DR KEGG; hpy:HP0749; -. DR PATRIC; 20592787; VBIHelPyl33062_0782. DR eggNOG; ENOG4105GP0; Bacteria. DR eggNOG; ENOG4111PW8; LUCA. DR KO; K09811; -. DR OMA; LMFKQVR; -. DR OrthoDB; EOG6PS5T6; -. DR BioCyc; HPY:HP0749-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. PE 4: Predicted; KW Cell cycle {ECO:0000313|EMBL:AAD07798.1}; KW Cell division {ECO:0000313|EMBL:AAD07798.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 147 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 217 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 237 263 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 268 AA; 30875 MW; 133EE20DF0A764FD CRC64; MNTLKKHLAF IIPLVALLFS LECVLFINQA IEQKEKKLIE DYSVVLASTQ KLNLELLRQN FSEIIALKEI DPNYSLEPLQ KTLGIDGLKE LRKNLPFFYS LQLSTFPTQE RLENIKEKLL KIPGVQKVEV FAKTYMQVYD LLSFIKTAVY IFALVVFVLS VLLMFKQVRI WIYQYHERLE IMDLLGASVS FKNGFLYKIA LMDSVIASFL APMLMLYTTS QKGFEKTMDT LGIIGGAFVL NHFLWGLLFS LVVSFVSVLL VAWRTRHV // ID O25829_HELPY Unreviewed; 218 AA. AC O25829; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=DNA polymerase III delta prime subunit (HolB) {ECO:0000313|EMBL:AAD08275.1}; GN OrderedLocusNames=HP_1231 {ECO:0000313|EMBL:AAD08275.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08275.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08275.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25842:HP_1247; NbExp=3; IntAct=EBI-527926, EBI-527915; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08275.1; -; Genomic_DNA. DR PIR; G64673; G64673. DR RefSeq; NP_208023.1; NC_000915.1. DR RefSeq; WP_000798416.1; NC_018939.1. DR ProteinModelPortal; O25829; -. DR DIP; DIP-3678N; -. DR IntAct; O25829; 2. DR MINT; MINT-176280; -. DR STRING; 85962.HP1231; -. DR PaxDb; O25829; -. DR EnsemblBacteria; AAD08275; AAD08275; HP_1231. DR GeneID; 899083; -. DR KEGG; heo:C694_06355; -. DR KEGG; hpy:HP1231; -. DR PATRIC; 20593833; VBIHelPyl33062_1287. DR eggNOG; ENOG4105WE9; Bacteria. DR eggNOG; COG0470; LUCA. DR KO; K02341; -. DR OMA; FDSRENQ; -. DR OrthoDB; EOG6423GH; -. DR BioCyc; HPY:HP1231-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 218 AA; 25394 MW; C02AF2F605A44796 CRC64; MKNSNRLIYT DNLEESLEET ASLFEHHIKF YTEIIEKDKK VIKTFNKDFK IEHAKEVISK AHLKHSELNA FLIAAPSYGI EAQNALLKIL EEPPNNVCFI MFAKSQNHVL ATIKSRLIKE DKRQKIPLKP LDLDLSKLDL KDIYAFLKNL DKENFDSREN QRERIESLLE SVNRHKIPLN EQELQAFDLA IKANSSYYKL SYNLLPLLLS LLSKKKTP // ID O26005_HELPY Unreviewed; 248 AA. AC O26005; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Outer membrane protein (Omp31) {ECO:0000313|EMBL:AAD08527.1}; GN OrderedLocusNames=HP_1469 {ECO:0000313|EMBL:AAD08527.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08527.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08527.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08527.1; -; Genomic_DNA. DR PIR; E64703; E64703. DR RefSeq; NP_208260.1; NC_000915.1. DR RefSeq; WP_000919897.1; NC_018939.1. DR ProteinModelPortal; O26005; -. DR STRING; 85962.HP1469; -. DR PaxDb; O26005; -. DR EnsemblBacteria; AAD08527; AAD08527; HP_1469. DR GeneID; 899824; -. DR KEGG; heo:C694_07605; -. DR KEGG; hpy:HP1469; -. DR PATRIC; 20594349; VBIHelPyl33062_1543. DR OMA; PTITHRL; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP1469-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 248 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157787. SQ SEQUENCE 248 AA; 28152 MW; 6EA84F6BEEC01DE2 CRC64; MLKRMILLGA LGVLASAEES AAFVGVNYQV SMIQNQTKMV NDNGLQKPLI KFPPYAGAGF EVGYKQFFGK KKWFGMRYYG FFDYAHNRFG VMKKGIPVGD SGFIYNSFSF GGNTLTERDS YQGQYYVNLF TYGVGLDTLW NFVNKENMVF GFVVGIQLAG DSWATSISKE IAHYAKHHSN SSYSPANFQF LWKFGVRTHI AKHNSLELGI KVPTITHQLF SLTNEKGYTL QADVRRVYAF QISYLRDF // ID O25470_HELPY Unreviewed; 429 AA. AC O25470; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07834.1}; GN OrderedLocusNames=HP_0781 {ECO:0000313|EMBL:AAD07834.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07834.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07834.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07834.1; -; Genomic_DNA. DR PIR; E64617; E64617. DR RefSeq; NP_207574.1; NC_000915.1. DR RefSeq; WP_001145994.1; NC_018939.1. DR ProteinModelPortal; O25470; -. DR DIP; DIP-3675N; -. DR IntAct; O25470; 1. DR MINT; MINT-160222; -. DR STRING; 85962.HP0781; -. DR PaxDb; O25470; -. DR EnsemblBacteria; AAD07834; AAD07834; HP_0781. DR GeneID; 900362; -. DR KEGG; heo:C694_04010; -. DR KEGG; hpy:HP0781; -. DR PATRIC; 20592851; VBIHelPyl33062_0814. DR eggNOG; ENOG4108QGE; Bacteria. DR eggNOG; ENOG4111JKM; LUCA. DR OMA; ECLKDLM; -. DR OrthoDB; EOG6TXQT5; -. DR BioCyc; HPY:HP0781-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 29 {ECO:0000256|SAM:SignalP}. FT CHAIN 30 429 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158557. SQ SEQUENCE 429 AA; 49445 MW; 9A14B1B7250B7D50 CRC64; MPYALRKRFF KRFALIVSTF CAISLNAKSY LFSPLPPAHQ QIIKTEPCSL ECLKDLMLQN QIFSFVSQYD NNNQDESLKT YYHDILNKLN PVFIASQTPA KESYEPKIEL AVLLPKKVVG RYAISVMNTL LAYLNTRNND FNIQVFDSDE ESPEKLEQTY KEIEKEKFPF VIALLTKEGV ENLLQNTTIS TPTYVPTVNR AQLENQTERS LSERLYFGGI DYKEQLSMLT AFINPNSPVI EYDDDGLIGE RLRQITESLS IEVKHQENIS YKQATSFSKN FRKNDAFFKN SILILNTPTT KSGLILSQIG LLEYKPLKIL STQINFNPSL LLLTQPKDRK DLFIVNALQN SDETLIEYAS LLESDLRHDW VNYSSAIGLE VFLNTLDPHF KKSFQENLED NQVRYHNQIY QALGYSFEPI KNESGTKKE // ID O25345_HELPY Unreviewed; 225 AA. AC O25345; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07699.1}; GN OrderedLocusNames=HP_0628 {ECO:0000313|EMBL:AAD07699.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07699.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07699.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07699.1; -; Genomic_DNA. DR PIR; D64598; D64598. DR ProteinModelPortal; O25345; -. DR IntAct; O25345; 1. DR STRING; 85962.HP0628; -. DR PaxDb; O25345; -. DR PRIDE; O25345; -. DR EnsemblBacteria; AAD07699; AAD07699; HP_0628. DR PATRIC; 20592539; VBIHelPyl33062_0658. DR eggNOG; COG0790; LUCA. DR OMA; NYESADM; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP0628-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF08238; Sel1; 4. DR SMART; SM00671; SEL1; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 225 AA; 24562 MW; AB1034A614740A3E CRC64; MGCSGGDATA CANLAQMYEN KKNADSNDKE NALQLYAVAC QGGDMLACNN LGWMFANGSG VPKDYYKAIS YYKFSCENGN DMGCYNLGLM SNVNNIYGID KAQLSQVDLN YLACNAGDMM GCANLGWIYA NGDLGAPLNN HYAAKYFQMA CDGGILGSCN NLGVLYQKGL GVPQDDQRAL DLFSYACDNG FESSCRNYGN FKEHLLRVNP NYGRLFMPYN SYDIP // ID O25337_HELPY Unreviewed; 313 AA. AC O25337; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 103. DE SubName: Full=Chemotaxis protein (CheV) {ECO:0000313|EMBL:AAD07681.1}; GN OrderedLocusNames=HP_0616 {ECO:0000313|EMBL:AAD07681.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07681.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07681.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07681.1; -; Genomic_DNA. DR PIR; H64596; H64596. DR RefSeq; NP_207411.1; NC_000915.1. DR RefSeq; WP_000251148.1; NC_018939.1. DR ProteinModelPortal; O25337; -. DR IntAct; O25337; 1. DR STRING; 85962.HP0616; -. DR PaxDb; O25337; -. DR DNASU; 898950; -. DR EnsemblBacteria; AAD07681; AAD07681; HP_0616. DR GeneID; 898950; -. DR KEGG; heo:C694_03185; -. DR KEGG; hpy:HP0616; -. DR PATRIC; 20592511; VBIHelPyl33062_0644. DR eggNOG; ENOG4105D4E; Bacteria. DR eggNOG; COG0784; LUCA. DR eggNOG; COG0835; LUCA. DR KO; K03415; -. DR OMA; RIIHKNW; -. DR OrthoDB; EOG6716JW; -. DR BioCyc; HPY:HP0616-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR024181; Chemotax_regulator_CheV. DR InterPro; IPR002545; CheW. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF01584; CheW; 1. DR Pfam; PF00072; Response_reg; 1. DR PIRSF; PIRSF002867; CheV; 1. DR SMART; SM00260; CheW; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF50341; SSF50341; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50851; CHEW; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 16 172 CheW-like. {ECO:0000259|PROSITE:PS50851}. FT DOMAIN 193 313 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 313 AA; 35661 MW; 59007E3967980E16 CRC64; MVRDIDKTTS LHLNNEAQFL CFRLDAEKDA QLYGMNIFKI REIIHYDGEV TEILGGSDGV MLGFLSVRGE SIPLVDVKRW LHYNANDPSR DLKECSVKDD HNLVIVCHFS NHSIALKVLK IERIIHKNWT EISAGDKQGI NEEGKLSAIT RFDEERVVQI LDVEKMISDV FPSLKDLDDL TLRCIEAIQS QKLILIAEDS LSALKTLEKI VQTLELRYLA FPNGRELLDY LYEKEHYQQV GVVITDLEMP NISGFEVLKT IKADHRTEHL PVIINSSMSS DSNRQLAQSL EADGFVVKSN ILEIHEMLKK TLS // ID O25980_HELPY Unreviewed; 81 AA. AC O25980; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08486.1}; GN OrderedLocusNames=HP_1439 {ECO:0000313|EMBL:AAD08486.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08486.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08486.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08486.1; -; Genomic_DNA. DR PIR; G64699; G64699. DR RefSeq; WP_001863130.1; NC_018939.1. DR ProteinModelPortal; O25980; -. DR STRING; 85962.HP1439; -. DR PaxDb; O25980; -. DR EnsemblBacteria; AAD08486; AAD08486; HP_1439. DR KEGG; heo:C694_07450; -. DR PATRIC; 20594281; VBIHelPyl33062_1510. DR OMA; GATSMFL; -. DR OrthoDB; EOG62K21Z; -. DR BioCyc; HPY:HP1439-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 70 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 81 AA; 9127 MW; B7C5ADDD525545B7 CRC64; MDNSTDRAKI LIEELKILQG VINRMAQNSL ECKKWTLALA VGVLSLKIEA ISHLYGLCVL GVFVSMLLFF RRLLSHARKV V // ID O25576_HELPY Unreviewed; 143 AA. AC O25576; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07967.1}; GN OrderedLocusNames=HP_0918 {ECO:0000313|EMBL:AAD07967.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07967.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07967.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07967.1; -; Genomic_DNA. DR PIR; F64634; F64634. DR RefSeq; NP_207710.1; NC_000915.1. DR RefSeq; WP_001229996.1; NC_018939.1. DR ProteinModelPortal; O25576; -. DR DIP; DIP-3637N; -. DR IntAct; O25576; 1. DR MINT; MINT-164106; -. DR STRING; 85962.HP0918; -. DR PaxDb; O25576; -. DR EnsemblBacteria; AAD07967; AAD07967; HP_0918. DR GeneID; 899447; -. DR KEGG; heo:C694_04725; -. DR KEGG; hpy:HP0918; -. DR PATRIC; 20593137; VBIHelPyl33062_0954. DR eggNOG; ENOG4105NNI; Bacteria. DR eggNOG; ENOG4111UBF; LUCA. DR OMA; HGDFLKR; -. DR OrthoDB; EOG64FKJK; -. DR BioCyc; HPY:HP0918-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.90.870.10; -; 1. DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom. DR SUPFAM; SSF55821; SSF55821; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 143 AA; 16137 MW; 5DB239C9CF28386C CRC64; MALVYLVQSD TTIGLLSKDS EKLNALKGRP KNQSVLIESA DFSTLKSLVR APNAFKNLIR RSAKTTFIYP NSKAVRVIRG RHGDFLNRFK TLYSTSANLT QCAYDKEIAS NLADVIVSDE RGLFESSSSK IFRLYKDKKV RIR // ID O25735_HELPY Unreviewed; 230 AA. AC O25735; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Outer membrane protein (Omp23) {ECO:0000313|EMBL:AAD08160.1}; GN OrderedLocusNames=HP_1107 {ECO:0000313|EMBL:AAD08160.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08160.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08160.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08160.1; -; Genomic_DNA. DR PIR; C64658; C64658. DR RefSeq; NP_207898.1; NC_000915.1. DR RefSeq; WP_000529465.1; NC_000915.1. DR ProteinModelPortal; O25735; -. DR STRING; 85962.HP1107; -. DR PaxDb; O25735; -. DR PRIDE; O25735; -. DR EnsemblBacteria; AAD08160; AAD08160; HP_1107. DR GeneID; 899643; -. DR KEGG; hpy:HP1107; -. DR PATRIC; 20593553; VBIHelPyl33062_1156. DR OMA; HGIIAQN; -. DR OrthoDB; EOG60PH9S; -. DR BioCyc; HPY:HP1107-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 230 AA; 25698 MW; 888ED21BE7FE7BD3 CRC64; MGQDNIRNWV MNKTTVKILM GMALLSSLQA AEAELDEKSK KPKFADRNTF YLGVGYQLSA INTSFSTESV DKSYFMTGNG FGVVLGGKFV AKTQAVEHVG FRYGLFYDQT FSSHKSYIST YGLEFSGLWD AFNSPKMFLG LEFGLGIAGA TYMPGGAMHG IIAQNLGKEN SLFQLLVKVG FRFGFLHNEI TFGLKFPVIP NKRTEIIDGL STTTLWHRLP VAYFNYIYNF // ID O25399_HELPY Unreviewed; 391 AA. AC O25399; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=Acetyl coenzyme A acetyltransferase (Thiolase) (FadA) {ECO:0000313|EMBL:AAD07742.1}; GN OrderedLocusNames=HP_0690 {ECO:0000313|EMBL:AAD07742.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07742.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07742.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the thiolase family. CC {ECO:0000256|RuleBase:RU003557}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07742.1; -; Genomic_DNA. DR PIR; B64606; B64606. DR RefSeq; NP_207484.1; NC_000915.1. DR RefSeq; WP_001006979.1; NC_018939.1. DR ProteinModelPortal; O25399; -. DR DIP; DIP-3656N; -. DR IntAct; O25399; 1. DR MINT; MINT-181883; -. DR STRING; 85962.HP0690; -. DR PaxDb; O25399; -. DR EnsemblBacteria; AAD07742; AAD07742; HP_0690. DR GeneID; 899312; -. DR KEGG; heo:C694_03555; -. DR KEGG; hpy:HP0690; -. DR PATRIC; 20592665; VBIHelPyl33062_0721. DR eggNOG; ENOG4105CHU; Bacteria. DR eggNOG; COG0183; LUCA. DR KO; K00626; -. DR OMA; ESTEKHN; -. DR OrthoDB; EOG68M4GV; -. DR BioCyc; HPY:HP0690-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016747; F:transferase activity, transferring acyl groups other than amino-acyl groups; IEA:InterPro. DR Gene3D; 3.40.47.10; -; 4. DR InterPro; IPR002155; Thiolase. DR InterPro; IPR016039; Thiolase-like. DR InterPro; IPR020615; Thiolase_acyl_enz_int_AS. DR InterPro; IPR020617; Thiolase_C. DR InterPro; IPR020613; Thiolase_CS. DR InterPro; IPR020616; Thiolase_N. DR Pfam; PF02803; Thiolase_C; 1. DR Pfam; PF00108; Thiolase_N; 1. DR PIRSF; PIRSF000429; Ac-CoA_Ac_transf; 1. DR SUPFAM; SSF53901; SSF53901; 2. DR TIGRFAMs; TIGR01930; AcCoA-C-Actrans; 1. DR PROSITE; PS00098; THIOLASE_1; 1. DR PROSITE; PS00737; THIOLASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07742.1}. FT DOMAIN 4 260 Thiolase_N. {ECO:0000259|Pfam:PF00108}. FT DOMAIN 269 389 Thiolase_C. {ECO:0000259|Pfam:PF02803}. SQ SEQUENCE 391 AA; 41121 MW; 9E11D79FC7415888 CRC64; MNEVVVVAAK RSAVGSFLGS LKSVGAREMG VSVLKDALNA SGLKPSDVDS VILGNVLGAG LGQNIARQIQ LDAGIPNDKN AFSVNMVCGS SMKAIQLAHD SIMLGRDEMV VCGGVENMSA APYLSFDMRD GKRMGNANMI DSMIHDGLWD AFNNYHMGIT ADNVAQAYHI SREDQDNFAL QSQLKARAAI NAGKFQEEIT PIEIANKKGV VVFKEDEYPR ETTLESLAKL KPAFKKDGSV TAGNSSGIND GASIIILCST KKAQTLGLKA MATIKGFGLG GCSPDIMGIC PSIAIKNNLK NVKMNLNDIH LFELNEAFAA QSLAVLKELE LNPNIVNVNG GAIAIGHPIG ASGARILVTL LHEMKRSGHG VGCASLCVGG GQGLSVVVEQ K // ID O24919_HELPY Unreviewed; 146 AA. AC O24919; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-NOV-1999, sequence version 2. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07169.2}; GN OrderedLocusNames=HP_0093 {ECO:0000313|EMBL:AAD07169.2}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07169.2, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07169.2, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07169.2; -; Genomic_DNA. DR PIR; E64531; E64531. DR RefSeq; WP_010875440.1; NC_018939.1. DR ProteinModelPortal; O24919; -. DR STRING; 85962.HP0093; -. DR CAZy; GT11; Glycosyltransferase Family 11. DR PaxDb; O24919; -. DR DNASU; 900162; -. DR EnsemblBacteria; AAD07169; AAD07169; HP_0093. DR KEGG; heo:C694_00455; -. DR PATRIC; 20591397; VBIHelPyl33062_0098. DR OMA; IICENWI; -. DR OrthoDB; EOG6PCPZX; -. DR BioCyc; HPY:HP0093-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0008107; F:galactoside 2-alpha-L-fucosyltransferase activity; IEA:InterPro. DR InterPro; IPR002516; Glyco_trans_11. DR PANTHER; PTHR11927; PTHR11927; 1. DR Pfam; PF01531; Glyco_transf_11; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 146 AA; 17209 MW; 34B49433E7CC9A6D CRC64; MILAAKNSVF VHIRRGDYVG IGCQLGIDYQ KKALEYMAKR VPNMELFVFC EDLEFTQNLD LGYPFMDMTT RDKEEEAYWD MLLMQSCQHG IIANSTYSWW AAYLIENPEK IIIGPKHWLF GHENILCKEW VKIESHFEVK SQKYNA // ID O25280_HELPY Unreviewed; 321 AA. AC O25280; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07620.1}; GN OrderedLocusNames=HP_0554 {ECO:0000313|EMBL:AAD07620.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07620.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07620.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07620.1; -; Genomic_DNA. DR PIR; B64589; B64589. DR RefSeq; NP_207349.1; NC_000915.1. DR RefSeq; WP_000437280.1; NC_018939.1. DR ProteinModelPortal; O25280; -. DR STRING; 85962.HP0554; -. DR PaxDb; O25280; -. DR EnsemblBacteria; AAD07620; AAD07620; HP_0554. DR GeneID; 899027; -. DR KEGG; heo:C694_02865; -. DR KEGG; hpy:HP0554; -. DR PATRIC; 20592383; VBIHelPyl33062_0580. DR eggNOG; ENOG4107MTB; Bacteria. DR eggNOG; ENOG410ZS4I; LUCA. DR OMA; DYSINQA; -. DR OrthoDB; EOG6BS8RQ; -. DR BioCyc; HPY:HP0554-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 169 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 321 AA; 37110 MW; DC5B86945E52E211 CRC64; MEQNKKSLEN LDLSDVQNIS KDISGATLEE LSLKNLDKNL QILKEVGVAE ICKATKIASK NIHSILEKRY ESLSRVHARG FIQILEREYK IDLSAWMKEF DKACTFKEGV SEEQNQETDP EEKTKNPLKV EIDYSINQAN IKLSKGLSKW KPFVLVLGVV VIVLAVVIIQ NSSSLKEERG QESAIKSGTK KSFFNKANPI EENKPEPTPK LEEKPKEQDK QEKEAIKEDP NTIYIIPKKD IWVEVIDLDE KKNSFQKVFK KNYSLETKNH RLLLRFGHGH LSLKNNHQEQ DYNDSKTRRF LYEPNKGLTL INEAQYKELQ R // ID O25623_HELPY Unreviewed; 359 AA. AC O25623; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Nickel-cobalt-cadmium resistance protein (NccB) {ECO:0000313|EMBL:AAD08013.1}; GN OrderedLocusNames=HP_0970 {ECO:0000313|EMBL:AAD08013.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08013.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08013.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08013.1; -; Genomic_DNA. DR PIR; B64641; B64641. DR RefSeq; NP_207761.1; NC_000915.1. DR RefSeq; WP_000816822.1; NC_018939.1. DR ProteinModelPortal; O25623; -. DR STRING; 85962.HP0970; -. DR TCDB; 2.A.6.1.14; the resistance-nodulation-cell division (rnd) superfamily. DR PaxDb; O25623; -. DR EnsemblBacteria; AAD08013; AAD08013; HP_0970. DR GeneID; 899502; -. DR KEGG; heo:C694_04995; -. DR KEGG; hpy:HP0970; -. DR PATRIC; 20593253; VBIHelPyl33062_1008. DR eggNOG; ENOG410817S; Bacteria. DR eggNOG; COG0845; LUCA. DR OMA; YFELQNN; -. DR OrthoDB; EOG6CK7JZ; -. DR BioCyc; HPY:HP0970-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 359 AA; 39637 MW; B3D089B0A0775B5C CRC64; MKRALLWLML MGVFSMGVSL KAKEYSEIIL EEKNLQPMGL KVVKLDKEIF SKGLPFNAYI DFDSKSSVVQ SLSFDASVVA VYKREGEQVK AGDAICEVSS IDLSNLYFEL QNNQNKLKIA KDITKKDLEL YKAGVIPKRE YQTSFLASQE MGLKVEQLES AFKSFGVDPK NPKGQYGFRI VASDSGLLAL APKNVGEKIL AFTSYVRISK SDDLIAQIKL PVGVSKSIKR DSPVYNEEGE KIGKIQSVSV VLDKGSNTIL ATALLDEGNY HVGEMVEMYI QGSQPKDSVL IPSNALIRNG KDYLVFVRTP KGFRPVVVQV LEERSKIFIV NAQNLHPNDS VAVGSLIGLK GMINNLGEE // ID O25834_HELPY Unreviewed; 183 AA. AC O25834; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08287.1}; GN OrderedLocusNames=HP_1236 {ECO:0000313|EMBL:AAD08287.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08287.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08287.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08287.1; -; Genomic_DNA. DR PIR; D64674; D64674. DR RefSeq; NP_208028.1; NC_000915.1. DR RefSeq; WP_001237418.1; NC_018939.1. DR ProteinModelPortal; O25834; -. DR DIP; DIP-3362N; -. DR IntAct; O25834; 7. DR MINT; MINT-164014; -. DR STRING; 85962.HP1236; -. DR PaxDb; O25834; -. DR EnsemblBacteria; AAD08287; AAD08287; HP_1236. DR GeneID; 898960; -. DR KEGG; heo:C694_06380; -. DR KEGG; hpy:HP1236; -. DR PATRIC; 20593843; VBIHelPyl33062_1292. DR eggNOG; ENOG4108W9V; Bacteria. DR eggNOG; COG2952; LUCA. DR KO; K09804; -. DR OMA; PYIANKI; -. DR OrthoDB; EOG689HTM; -. DR BioCyc; HPY:HP1236-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007463; DUF507. DR Pfam; PF04368; DUF507; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 183 AA; 22149 MW; 63411AC49B34F7E1 CRC64; MRLKLTHINH ISHKIANDFI HSKLLELKAP RELLCELIEG ILEKSVKKEN AIDEQARELL EENTDEIEFM RMDERQLFWM IKRQIAQKEG FHLFWEERCN DLSHQILNKI LDEDLIMFSV SENLIRNLIY KSIDTYSKAY ESIENEVHEK IKHYKRKLPV GSDEYELVFE RLYEEELRRK GFL // ID O25184_HELPY Unreviewed; 389 AA. AC O25184; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07505.1}; GN OrderedLocusNames=HP_0434 {ECO:0000313|EMBL:AAD07505.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07505.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07505.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07505.1; -; Genomic_DNA. DR PIR; B64574; B64574. DR ProteinModelPortal; O25184; -. DR STRING; 85962.HP0434; -. DR PaxDb; O25184; -. DR PRIDE; O25184; -. DR EnsemblBacteria; AAD07505; AAD07505; HP_0434. DR PATRIC; 20592127; VBIHelPyl33062_0452. DR OrthoDB; EOG60SCFR; -. DR BioCyc; HPY:HP0434-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 389 AA; 45149 MW; 4FBA1900CD7FD120 CRC64; MLSFIKEDSI IKAYNLNTAK LEPKDREKLG LLKIEKNKIY FHLDEKRYLK LEIIGKTKEK EIKNAFCSNA FLAAQVLNLN QERQVLELKC HFFKHPIKIL PEPLNINFKD TIIKKLLKDM GKDKKIEDFK ETCILKIAGF TYFVCVLPYE YENKEDKENS EEILKEDFRL LNTKGGLSVK RALINNRHSY EAIKLRPIKQ ELVPGLCLFF QGSLEFNDKT TKTMRTSLLD QIQQDDKSYL KIWEKYLIKS AQKSFNEAKE VGVLEIESVS KEGGNLRIRF KPALGKNKME ILKKSQFKKG SDLGVLEDLD PQNEENLINL ISEQKKQISK NNSQSIMIED ISGDDFIIDY DLSIKEGDAF HLNYMGDLNT LKKQYSALDK TKKGLKRQS // ID O25205_HELPY Unreviewed; 78 AA. AC O25205; Q7B7P2; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07536.1}; GN OrderedLocusNames=HP_0458 {ECO:0000313|EMBL:AAD07536.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07536.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07536.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07536.1; -; Genomic_DNA. DR PIR; B64577; B64577. DR RefSeq; NP_207256.1; NC_000915.1. DR RefSeq; WP_001168532.1; NC_018939.1. DR ProteinModelPortal; O25205; -. DR STRING; 85962.HP0458; -. DR PaxDb; O25205; -. DR EnsemblBacteria; AAD07536; AAD07536; HP_0458. DR GeneID; 898884; -. DR KEGG; heo:C694_02340; -. DR KEGG; hpy:HP0458; -. DR PATRIC; 20592183; VBIHelPyl33062_0480. DR OMA; QYNDAYA; -. DR OrthoDB; EOG66XBJG; -. DR BioCyc; HPY:HP0458-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 78 AA; 8858 MW; 40C063648B0E036C CRC64; MQKEVLVEKP NPLTISYNLE QAISSLKSSV NALMKKEAHL DAYILVTNIR NIVDELHKEV VLANQSNKNT PKRKRKSS // ID O25768_HELPY Unreviewed; 115 AA. AC O25768; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08202.1}; GN OrderedLocusNames=HP_1150 {ECO:0000313|EMBL:AAD08202.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08202.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08202.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25990:HP_1451; NbExp=3; IntAct=EBI-7507498, EBI-528082; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08202.1; -; Genomic_DNA. DR PIR; F64663; F64663. DR RefSeq; NP_207941.1; NC_000915.1. DR RefSeq; WP_000545179.1; NC_018939.1. DR ProteinModelPortal; O25768; -. DR DIP; DIP-3658N; -. DR IntAct; O25768; 7. DR MINT; MINT-176083; -. DR STRING; 85962.HP1150; -. DR PaxDb; O25768; -. DR DNASU; 899845; -. DR EnsemblBacteria; AAD08202; AAD08202; HP_1150. DR GeneID; 899845; -. DR KEGG; heo:C694_05940; -. DR KEGG; hpy:HP1150; -. DR PATRIC; 20593651; VBIHelPyl33062_1204. DR eggNOG; ENOG4105QDU; Bacteria. DR eggNOG; COG1837; LUCA. DR KO; K06960; -. DR OMA; QADCKDY; -. DR OrthoDB; EOG6XDH3R; -. DR BioCyc; HPY:HP1150-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR InterPro; IPR009019; KH_prok-type. DR SUPFAM; SSF54814; SSF54814; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 115 AA; 12711 MW; D55823BE9B447596 CRC64; MHESDPLNTP FSQADCKDYS HCVATFLEKY LKKVVSFPQA LSVEHTLLED KVKQITIYTH PSDMGHVIGK EGKMVSAIKA FISGVKAKDG FSYKIVVFAS KNGDKNPHVL GDQTP // ID O25044_HELPY Unreviewed; 240 AA. AC O25044; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Cytochrome c biogenesis protein (CcdA) {ECO:0000313|EMBL:AAD07331.1}; GN OrderedLocusNames=HP_0265 {ECO:0000313|EMBL:AAD07331.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07331.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07331.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07331.1; -; Genomic_DNA. DR PIR; A64553; A64553. DR RefSeq; NP_207063.1; NC_000915.1. DR RefSeq; WP_000970997.1; NC_000915.1. DR ProteinModelPortal; O25044; -. DR STRING; 85962.HP0265; -. DR PaxDb; O25044; -. DR PRIDE; O25044; -. DR EnsemblBacteria; AAD07331; AAD07331; HP_0265. DR GeneID; 900118; -. DR KEGG; hpy:HP0265; -. DR PATRIC; 20591757; VBIHelPyl33062_0276. DR eggNOG; ENOG4107SK0; Bacteria. DR eggNOG; COG0785; LUCA. DR KO; K06196; -. DR OMA; FRFSFLY; -. DR OrthoDB; EOG64BQ62; -. DR BioCyc; HPY:HP0265-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro. DR GO; GO:0055114; P:oxidation-reduction process; IEA:InterPro. DR InterPro; IPR003834; Cyt_c_assmbl_TM_dom. DR Pfam; PF02683; DsbD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 170 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 213 231 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 20 228 DsbD. {ECO:0000259|Pfam:PF02683}. SQ SEQUENCE 240 AA; 26522 MW; 13C28C8413FCD422 CRC64; MMFDNTLVNL FDTAPLLTSL LAGILTFLSP CVLPLIPAYM SYISQISLED IKDGKAKRVS VFLKSLMFVV GFSLVFLGVG MSMAKLIHSF SFSWVNYIAG GIVILFGLHF LGVFRFAFLY KTQSVGLASK SNSMQRFYPF LLGMSFALGW TPCIGPIFTS IVIMSASKDA YGLILMVVFV MGLAIPFLLV ALMLERALLF LKSLKKYNRA IEIVSGLVLI LMGILIMTNS LESLTNFLQK // ID O25604_HELPY Unreviewed; 289 AA. AC O25604; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Acetyl-CoA carboxylase beta subunit (AccD) {ECO:0000313|EMBL:AAD07995.1}; GN OrderedLocusNames=HP_0950 {ECO:0000313|EMBL:AAD07995.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07995.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07995.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBUNIT: Acetyl-CoA carboxylase is a heterohexamer composed of CC biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) CC and two subunits each of ACCase subunit alpha (AccA) and ACCase CC subunit beta (AccD). {ECO:0000256|SAAS:SAAS00521812}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00505673}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07995.1; -; Genomic_DNA. DR PIR; F64638; F64638. DR RefSeq; NP_207742.1; NC_000915.1. DR RefSeq; WP_000505053.1; NC_018939.1. DR ProteinModelPortal; O25604; -. DR DIP; DIP-3163N; -. DR IntAct; O25604; 12. DR MINT; MINT-163318; -. DR STRING; 85962.HP0950; -. DR PaxDb; O25604; -. DR EnsemblBacteria; AAD07995; AAD07995; HP_0950. DR GeneID; 899483; -. DR KEGG; heo:C694_04895; -. DR KEGG; hpy:HP0950; -. DR PATRIC; 20593213; VBIHelPyl33062_0988. DR eggNOG; ENOG4107QTG; Bacteria. DR eggNOG; COG0777; LUCA. DR KO; K01963; -. DR OMA; PEGLWIK; -. DR OrthoDB; EOG6HQSSF; -. DR BioCyc; HPY:HP0950-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009317; C:acetyl-CoA carboxylase complex; IEA:InterPro. DR GO; GO:0003989; F:acetyl-CoA carboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.226.10; -; 1. DR HAMAP; MF_01395; AcetylCoA_CT_beta; 1. DR InterPro; IPR000438; Acetyl_CoA_COase_Trfase_b_su. DR InterPro; IPR000022; Carboxyl_trans. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR011762; COA_CT_N. DR Pfam; PF01039; Carboxyl_trans; 1. DR PRINTS; PR01070; ACCCTRFRASEB. DR SUPFAM; SSF52096; SSF52096; 1. DR TIGRFAMs; TIGR00515; accD; 1. DR PROSITE; PS50980; COA_CT_NTER; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Cytoplasm {ECO:0000256|SAAS:SAAS00505665}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 48 262 Carboxyltransferase. FT {ECO:0000259|PROSITE:PS50980}. SQ SEQUENCE 289 AA; 32553 MW; A57ADDAF34B0AF1C CRC64; MGFADFFKNF KINKLRTAPS KEEQPSHWVK CPKCYALMYH KEVFSKYSVC LKCHYHFRMK AAERIEFLCD VGSFEEFDKH LRPNDPLNFV DKESYKQRIK KYEKRTNRPS SVISGEAKIN RMPLQIVVFD FSFMGGSLGS VEGEKIVRAI NRAVAKREAL LIVSASGGAR MQESTYSLMQ MAKTSAALNR LSEAKLPFIS LLSDPTYGGV SASFAFLGDL IIAEPGAMIG FAGPRVIKQT IGADLPEGFQ TAEFLLEHGL IDMIVHRKDL KKTLSDLIAM MTHKTSKIF // ID O25651_HELPY Unreviewed; 104 AA. AC O25651; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08060.1}; GN OrderedLocusNames=HP_1005 {ECO:0000313|EMBL:AAD08060.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08060.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08060.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08060.1; -; Genomic_DNA. DR PIR; E64645; E64645. DR RefSeq; NP_207796.1; NC_000915.1. DR RefSeq; WP_000065304.1; NC_018939.1. DR ProteinModelPortal; O25651; -. DR PaxDb; O25651; -. DR EnsemblBacteria; AAD08060; AAD08060; HP_1005. DR GeneID; 899539; -. DR KEGG; heo:C694_05185; -. DR KEGG; hpy:HP1005; -. DR PATRIC; 20593335; VBIHelPyl33062_1049. DR OMA; QECELQE; -. DR OrthoDB; EOG6K6VBS; -. DR BioCyc; HPY:HP1005-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 20 47 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 104 AA; 12294 MW; 442BD50E1CD9E3CA CRC64; MSNIITDYSQ YNEKQLHNFL NSIEKQLLKA ERDKNKAIKK IQECELQERM IRQVLAQKHS QEKEPTPSLL NTIASKDDPE YDVSFGDFND FLQIAKQERE RHNA // ID O26031_HELPY Unreviewed; 388 AA. AC O26031; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Outer membrane protein (Omp32) {ECO:0000313|EMBL:AAD08546.1}; GN OrderedLocusNames=HP_1501 {ECO:0000313|EMBL:AAD08546.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08546.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08546.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08546.1; -; Genomic_DNA. DR PIR; E64707; E64707. DR RefSeq; NP_208292.1; NC_000915.1. DR RefSeq; WP_000979400.1; NC_000915.1. DR ProteinModelPortal; O26031; -. DR STRING; 85962.HP1501; -. DR PaxDb; O26031; -. DR EnsemblBacteria; AAD08546; AAD08546; HP_1501. DR GeneID; 899790; -. DR KEGG; heo:C694_07775; -. DR KEGG; hpy:HP1501; -. DR PATRIC; 20594415; VBIHelPyl33062_1576. DR OMA; FAGNTWT; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP1501-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 388 AA; 42976 MW; B4E0D6B188CE36CD CRC64; MMLNFMTKKK NRMQDCKMVC KNFNRKESVL IAQSLDISKK GSVILGALLS SLWLTNPLNA HEKNGAFVGI SLEVGRADQK TNAYKNGELF QVPFGDVSAN DDGKVPDGQT GGCQPASGTP GTPGYTKANC VVNWTSRTML STNKNIPGRN QPMYGLGVMT GYKHFIGKKR WFGLRYYGFF DYGHTNFSNS RAANAISPFY LSDQKADMYT YGFGTDMLFN IIDKPKATAG FFLGVNFAGN TWTNNRVGYF KDGYVYGVNT DADAYMTNAD GTITCGDTTP ASCNVGINPN SVYTTGKLNA KVNHTIFQFL VNVGIRTNIF EHHGIEFGIK IPTLPNYFFK GSTTIRAKKQ GPLENGQPTT ITGAETNFSL TQTLRRQYSM YLRYVYTF // ID O24903_HELPY Unreviewed; 496 AA. AC O24903; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07140.1}; GN OrderedLocusNames=HP_0063 {ECO:0000313|EMBL:AAD07140.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07140.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07140.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07140.1; -; Genomic_DNA. DR PIR; G64527; G64527. DR RefSeq; NP_206863.1; NC_000915.1. DR RefSeq; WP_000852747.1; NC_018939.1. DR ProteinModelPortal; O24903; -. DR DIP; DIP-3130N; -. DR IntAct; O24903; 5. DR MINT; MINT-171938; -. DR STRING; 85962.HP0063; -. DR PaxDb; O24903; -. DR EnsemblBacteria; AAD07140; AAD07140; HP_0063. DR GeneID; 900241; -. DR KEGG; heo:C694_00300; -. DR KEGG; hpy:HP0063; -. DR PATRIC; 20591327; VBIHelPyl33062_0065. DR OMA; RNENYTQ; -. DR OrthoDB; EOG6QVRCV; -. DR BioCyc; HPY:HP0063-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032869; WHH_dom_containing. DR Pfam; PF14414; WHH; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 105 132 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 496 AA; 57408 MW; 693781CF682A0112 CRC64; MAEWKTDTEE VKEVVKKCRE FKRSLQEEKC SPFIKDLDSY ALKIIVERRK IEHQLQEAIE KLRRAKKKRS SFWGSFVEGA RDLLDMVREI IPPAKLGAEA CDKVLNLMED NIEKWEHNVR LLERMLEIYA TQAKASAELV EGAWKSVKKS LDFYTDKHQE FIKRLNYASE AIDNEYNIAP PEILNESDFE SPTIVYNPKK SVYDEHLKDL REDFSFSLYA DLKNRINASS KLDRTTTSKE QEFEKNLEDL MPGFRGGTDT LSGDELEHMA SFRGQEFEKN LEDLMPSSLG VHSYDESLNL AKKNCVKNCK KALGDFTEKI KESPNDLNAI NEAFNHLETE LERATENLSQ KIAPILERYE NDKRQKLGYG EFLEKEKEGF MVDEQNPYPE EVRFNELRLA EFESVFSAIV PLEDLDKPAC AHHALKALEA TLKNRDLGFD ATELEQIAKG FIPKGYLWHF DANVLGNVAL VREELLLGVK HTKGYLLWKQ FLQTQN // ID O25378_HELPY Unreviewed; 85 AA. AC O25378; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07735.1}; GN OrderedLocusNames=HP_0667 {ECO:0000313|EMBL:AAD07735.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07735.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07735.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07735.1; -; Genomic_DNA. DR PIR; C64603; C64603. DR ProteinModelPortal; O25378; -. DR DIP; DIP-3471N; -. DR IntAct; O25378; 7. DR MINT; MINT-159859; -. DR STRING; 85962.HP0667; -. DR REBASE; 6149; HpyAXVIII. DR PaxDb; O25378; -. DR PRIDE; O25378; -. DR EnsemblBacteria; AAD07735; AAD07735; HP_0667. DR PATRIC; 20592619; VBIHelPyl33062_0698. DR OMA; WELRENE; -. DR BioCyc; HPY:HP0667-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 85 AA; 10148 MW; 949519AF96471189 CRC64; MQEISAYTLI KEKLQAIPNL RHKGILFEKI SKQFLQEHDS ANEYESIDLW YDWKLRGNER DKGIDIVITT FKQRIHRCAM QIPSK // ID O25513_HELPY Unreviewed; 245 AA. AC O25513; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07896.1}; GN OrderedLocusNames=HP_0842 {ECO:0000313|EMBL:AAD07896.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07896.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07896.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07896.1; -; Genomic_DNA. DR PIR; B64625; B64625. DR RefSeq; NP_207635.1; NC_000915.1. DR RefSeq; WP_000888450.1; NC_018939.1. DR ProteinModelPortal; O25513; -. DR IntAct; O25513; 2. DR STRING; 85962.HP0842; -. DR PaxDb; O25513; -. DR EnsemblBacteria; AAD07896; AAD07896; HP_0842. DR GeneID; 899371; -. DR KEGG; heo:C694_04315; -. DR KEGG; hpy:HP0842; -. DR PATRIC; 20592977; VBIHelPyl33062_0876. DR eggNOG; ENOG410621X; Bacteria. DR eggNOG; ENOG41129XU; LUCA. DR OMA; INQPYFA; -. DR OrthoDB; EOG64R644; -. DR BioCyc; HPY:HP0842-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 245 AA; 27891 MW; 2C06B18D9F9CCE09 CRC64; MLEALNALNQ LNALHSKNAT HHFNAALPIL LKVLEKQDKD LFLLQVGNRI IPTKSEQELK INQPYFATMQ RNQLGDIVLK NLVPAPKILD ALDDLPVLEM KQIKEILSGK DNTPLKEYKE LLSEKLIHAK SSQEFLNTAN MLLSLQSQVL SFVVENERKK TFLQVKAKKQ SVDFYALYPN LGEIGGVIYL KEKEKQLFLK TTLQRTKEVL KEAQNTLLGF SSVEIVCEKT PMLFAFEERL LDTIG // ID O25204_HELPY Unreviewed; 87 AA. AC O25204; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07535.1}; GN OrderedLocusNames=HP_0457 {ECO:0000313|EMBL:AAD07535.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07535.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07535.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07535.1; -; Genomic_DNA. DR PIR; A64577; A64577. DR RefSeq; NP_207255.1; NC_000915.1. DR RefSeq; WP_001177716.1; NC_018939.1. DR ProteinModelPortal; O25204; -. DR STRING; 85962.HP0457; -. DR PaxDb; O25204; -. DR EnsemblBacteria; AAD07535; AAD07535; HP_0457. DR GeneID; 900066; -. DR KEGG; heo:C694_02335; -. DR KEGG; hpy:HP0457; -. DR PATRIC; 20592181; VBIHelPyl33062_0479. DR OMA; NAKSWIL; -. DR OrthoDB; EOG64XXR4; -. DR BioCyc; HPY:HP0457-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 64 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 87 AA; 9971 MW; D86C25DFD3929214 CRC64; MQLVGISVSN LKEISSKEKF LWLNAKSFLL SGFVPFIMIP WLDILNSFVL YVCFLLIFSI AEFFDEDISD ILIAHSKIKT KANSFYA // ID O25932_HELPY Unreviewed; 77 AA. AC O25932; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08428.1}; GN OrderedLocusNames=HP_1381 {ECO:0000313|EMBL:AAD08428.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08428.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08428.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08428.1; -; Genomic_DNA. DR PIR; E64692; E64692. DR RefSeq; NP_208172.1; NC_000915.1. DR RefSeq; WP_001862613.1; NC_000915.1. DR ProteinModelPortal; O25932; -. DR STRING; 85962.HP1381; -. DR PaxDb; O25932; -. DR PRIDE; O25932; -. DR EnsemblBacteria; AAD08428; AAD08428; HP_1381. DR GeneID; 900300; -. DR KEGG; hpy:HP1381; -. DR PATRIC; 20594151; VBIHelPyl33062_1446. DR OMA; GIWIVFM; -. DR OrthoDB; EOG6N0HV2; -. DR BioCyc; HPY:HP1381-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 60 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 77 AA; 8868 MW; 5F5C1E485DDB92C7 CRC64; MRGAKWGIWI VFMDYRLFHM DSMDLPSNQQ TTIRDYLKPG SIVVFAIIVI IISSHFSNAY KTLIASNKKP VLSHLEI // ID O25250_HELPY Unreviewed; 459 AA. AC O25250; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Glycolate oxidase subunit (GlcD) {ECO:0000313|EMBL:AAD07573.1}; GN OrderedLocusNames=HP_0509 {ECO:0000313|EMBL:AAD07573.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07573.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07573.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07573.1; -; Genomic_DNA. DR PIR; E64583; E64583. DR RefSeq; NP_207306.1; NC_000915.1. DR RefSeq; WP_000886845.1; NC_018939.1. DR ProteinModelPortal; O25250; -. DR DIP; DIP-3631N; -. DR IntAct; O25250; 3. DR MINT; MINT-169945; -. DR STRING; 85962.HP0509; -. DR PaxDb; O25250; -. DR DNASU; 898838; -. DR EnsemblBacteria; AAD07573; AAD07573; HP_0509. DR GeneID; 898838; -. DR KEGG; heo:C694_02615; -. DR KEGG; hpy:HP0509; -. DR PATRIC; 20592293; VBIHelPyl33062_0535. DR eggNOG; ENOG4105CQB; Bacteria. DR eggNOG; COG0277; LUCA. DR KO; K00104; -. DR OMA; TPRTCGE; -. DR OrthoDB; EOG6RZB40; -. DR BioCyc; HPY:HP0509-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009339; C:glycolate oxidase complex; IEA:InterPro. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0008891; F:glycolate oxidase activity; IEA:InterPro. DR Gene3D; 1.10.45.10; -; 1. DR Gene3D; 3.30.43.10; -; 1. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR016167; FAD-bd_2_sub1. DR InterPro; IPR016164; FAD-linked_Oxase-like_C. DR InterPro; IPR004113; FAD-linked_oxidase_C. DR InterPro; IPR004490; GlcD. DR InterPro; IPR006094; Oxid_FAD_bind_N. DR InterPro; IPR016171; Vanillyl_alc_oxidase_C-sub2. DR Pfam; PF02913; FAD-oxidase_C; 1. DR Pfam; PF01565; FAD_binding_4; 1. DR SUPFAM; SSF55103; SSF55103; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR TIGRFAMs; TIGR00387; glcD; 1. DR PROSITE; PS51387; FAD_PCMH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 36 216 FAD-binding PCMH-type. FT {ECO:0000259|PROSITE:PS51387}. SQ SEQUENCE 459 AA; 50570 MW; F61B3AD95DAB8946 CRC64; MLDQQHIQYF KNLVGGEDFF TDLAHLNAYC YDATKERHLP SGVIFPKNEQ EISQILKYCN EHRIIVVPRG AGSGFTGGAL SVSGGLVLSV EKHLDKILEI DTKNLIARVE PGVINKHFQN EVEKLNLFYP PDPASENQST LGGNVAENAG GMRAAKYGIT KDYVMALRVV LANGEIIRAG KKTIKDVAGF NVAGLMIASE GCLGVISEIT LKLLAKPPLK QSAMGVFNHI EDAMNAVYKT MSSGVTPVAM EFLDNLSIKA VEERFSKGLP KDAGAILITQ VDGVVKEQIA WQLNEIEKHF KANCCVDFKI AQNEQEEQDL WFSRRNASQS ISVYGKKKLN EDVTVPRASL PSLLQEVAKI SQKYGFKIPC FGHTGDGNVH VNIMLEDPKR DLEKGHEAME EIFQAAISLE GTLSGEHGIG LSKAKFMPLA FNHSEMELFR NIKKALDPNN ILNPFKMGL // ID O25704_HELPY Unreviewed; 93 AA. AC O25704; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08111.1}; GN OrderedLocusNames=HP_1064 {ECO:0000313|EMBL:AAD08111.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08111.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08111.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08111.1; -; Genomic_DNA. DR PIR; H64652; H64652. DR RefSeq; NP_207855.1; NC_000915.1. DR RefSeq; WP_010875589.1; NC_000915.1. DR ProteinModelPortal; O25704; -. DR STRING; 85962.HP1064; -. DR PaxDb; O25704; -. DR PRIDE; O25704; -. DR EnsemblBacteria; AAD08111; AAD08111; HP_1064. DR GeneID; 899599; -. DR KEGG; hpy:HP1064; -. DR PATRIC; 20593465; VBIHelPyl33062_1113. DR KO; K06950; -. DR OMA; LWRLFLK; -. DR OrthoDB; EOG6R87M6; -. DR BioCyc; HPY:HP1064-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 17 37 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 10872 MW; 43F54329317267A3 CRC64; MLYASKTSLF LQIKGKFMLR ILIPLLIIVW VLWRLFLRQK PPKDNHSYTQ QTPKELEDHM IVCSKCQTYV SSKDAIYSGA VAYCSETCLK DKR // ID O25276_HELPY Unreviewed; 268 AA. AC O25276; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Cag pathogenicity island protein (Cag22) {ECO:0000313|EMBL:AAD07609.1}; GN OrderedLocusNames=HP_0543 {ECO:0000313|EMBL:AAD07609.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07609.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07609.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07609.1; -; Genomic_DNA. DR PIR; G64587; G64587. DR RefSeq; NP_207339.1; NC_000915.1. DR RefSeq; WP_000814259.1; NC_018939.1. DR ProteinModelPortal; O25276; -. DR IntAct; O25276; 3. DR STRING; 85962.HP0543; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25276; -. DR EnsemblBacteria; AAD07609; AAD07609; HP_0543. DR GeneID; 899001; -. DR KEGG; heo:C694_02800; -. DR KEGG; hpy:HP0543; -. DR PATRIC; 20592357; VBIHelPyl33062_0567. DR KO; K12107; -. DR OMA; TEQNLTT; -. DR OrthoDB; EOG6ZH2FW; -. DR BioCyc; HPY:HP0543-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 22 49 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 268 AA; 31787 MW; 35F0E995639E19A5 CRC64; MKQSLREQKL LKILENDVLT ILDSFSNYLF ELREELDFIE EEMEGEITEQ NLTALYDFSN FLEDHVNVFY ENVLNIDDVK TEHLYSGLID SLNANLHFVK SFLSNQDLDF RFFKEINDGQ DPQKTLSRLI PLQSGKNDAS SFKANNSFVS LVYVYVYFML ETIMQSYRIL RLLEKPINNN ISEDMQNDIE NFFVQANFLE YYVQNKIYPT NHAYDFTHLI MDSIIPNWIQ TDMSVEAKKK ELFEKYFQNI DEVTNKMLDQ KNQNXSND // ID O25352_HELPY Unreviewed; 512 AA. AC O25352; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07697.1}; GN OrderedLocusNames=HP_0635 {ECO:0000313|EMBL:AAD07697.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07697.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07697.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07697.1; -; Genomic_DNA. DR PIR; C64599; C64599. DR RefSeq; NP_207429.1; NC_000915.1. DR RefSeq; WP_000232258.1; NC_018939.1. DR ProteinModelPortal; O25352; -. DR DIP; DIP-3233N; -. DR IntAct; O25352; 2. DR MINT; MINT-166373; -. DR STRING; 85962.HP0635; -. DR PaxDb; O25352; -. DR EnsemblBacteria; AAD07697; AAD07697; HP_0635. DR GeneID; 899297; -. DR KEGG; heo:C694_03285; -. DR KEGG; hpy:HP0635; -. DR PATRIC; 20592553; VBIHelPyl33062_0665. DR eggNOG; ENOG4108P97; Bacteria. DR eggNOG; ENOG4111696; LUCA. DR OMA; FVRYFPK; -. DR OrthoDB; EOG6XQ3GF; -. DR BioCyc; HPY:HP0635-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 512 AA; 58388 MW; 83E7C2F144720E10 CRC64; MVFVFLFKCV NEETSLNFTP LLERMACNLQ ARFYSVYKDN TTSFYLQASA ETTLEFAQKL SEILPFSLDF SFLSLKEITE PLDENLFQTA SLSKPLFMNA KEHQDFLDKN SSLYADTLGL IKNTAFKGDI IHSPKELIDC LTQLKGMLKT QDFIPIFTSR EALSLSLKNP SPSVIFSDLS SVLSCTKLPL EDAKYLASLE KPSIKAPLKS VFKDTFKNDE IIAQLPYDPI LNLLCHILQD EGIEFVFMHE SRSCEALLYY EALFKTPKRL ITPTKKFVLE NNFSTFPFKD ELEFLSATPN SIVLYLSFKR PTRLLLHANG SLKTLLSVSF DFNKMFNALK QDEKASRMLQ NYATKFPDFY ARIVELSKYD LGGANLLDFF CILGFVLGYS EDFCTQSVIP LAKECLRPKG PRIDYKILKD NSLKMALNFS KIMHSAMSFR LAGVENEILS LGILDSLAEF LGNFIWDNAQ NFSVQEVTIA GDFFGEKVFL DLFVRYFPKT LALKTHAFLD YE // ID O26025_HELPY Unreviewed; 89 AA. AC O26025; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Conserved hypothetical nifU-like protein {ECO:0000313|EMBL:AAD08534.1}; GN OrderedLocusNames=HP_1492 {ECO:0000313|EMBL:AAD08534.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08534.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08534.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08534.1; -; Genomic_DNA. DR PIR; D64706; D64706. DR RefSeq; NP_208283.1; NC_000915.1. DR RefSeq; WP_000569296.1; NC_018939.1. DR ProteinModelPortal; O26025; -. DR DIP; DIP-3746N; -. DR IntAct; O26025; 7. DR MINT; MINT-4072482; -. DR STRING; 85962.HP1492; -. DR PaxDb; O26025; -. DR EnsemblBacteria; AAD08534; AAD08534; HP_1492. DR GeneID; 899800; -. DR KEGG; heo:C694_07730; -. DR KEGG; hpy:HP1492; -. DR PATRIC; 20594395; VBIHelPyl33062_1566. DR eggNOG; ENOG410839Z; Bacteria. DR eggNOG; COG0694; LUCA. DR OMA; QLRIDIH; -. DR OrthoDB; EOG6CS079; -. DR BioCyc; HPY:HP1492-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR InterPro; IPR001075; NIF_FeS_clus_asmbl_NifU_C. DR Pfam; PF01106; NifU; 1. DR ProDom; PD002830; NIF_FeS_clus_asmbl_NifU_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 14 78 NifU. {ECO:0000259|Pfam:PF01106}. SQ SEQUENCE 89 AA; 10121 MW; A8CDED6C96CA0763 CRC64; MIEFSDEDLQ KPVRIVIEKI RPYLLKDGGN IEVLGVKSMK IYVALEGACK TCSSSKITLK NVIERQLKMD IHPNLEVVCL ENAKEFDKL // ID O25713_HELPY Unreviewed; 207 AA. AC O25713; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08133.1}; GN OrderedLocusNames=HP_1081 {ECO:0000313|EMBL:AAD08133.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08133.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08133.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08133.1; -; Genomic_DNA. DR PIR; A64655; A64655. DR RefSeq; NP_207872.1; NC_000915.1. DR RefSeq; WP_000946689.1; NC_018939.1. DR ProteinModelPortal; O25713; -. DR DIP; DIP-3583N; -. DR IntAct; O25713; 2. DR MINT; MINT-167001; -. DR STRING; 85962.HP1081; -. DR PaxDb; O25713; -. DR EnsemblBacteria; AAD08133; AAD08133; HP_1081. DR GeneID; 899617; -. DR KEGG; heo:C694_05585; -. DR KEGG; hpy:HP1081; -. DR PATRIC; 20593501; VBIHelPyl33062_1130. DR OMA; KKTIEPN; -. DR OrthoDB; EOG66B3XZ; -. DR BioCyc; HPY:HP1081-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 207 AA; 23737 MW; 9BF3A0E76590AB37 CRC64; MLRVLSVGVA FILLGCQFFN KTTLHLKYKD YPKNSALKTA FTLTPPKIFF NARFVPPFYQ KEFKKAITQQ IAYFLKDKSA FILNVSGNVF FSFEENPKDL KAIKERLKKT IEPNADPKAV MRFLNLQASL ILECVPQTTC PFDTLLIPTA FSVPVYYANR LGDNPSLFSQ EDKTYHNALI KALNKAYYSL MEGLEKRLNA IKNAEWL // ID O24981_HELPY Unreviewed; 213 AA. AC O24981; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 113. DE SubName: Full=ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAD07249.1}; GN OrderedLocusNames=HP_0179 {ECO:0000313|EMBL:AAD07249.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07249.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07249.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07249.1; -; Genomic_DNA. DR PIR; C64542; C64542. DR RefSeq; NP_206978.1; NC_000915.1. DR RefSeq; WP_000588225.1; NC_018939.1. DR ProteinModelPortal; O24981; -. DR STRING; 85962.HP0179; -. DR PaxDb; O24981; -. DR EnsemblBacteria; AAD07249; AAD07249; HP_0179. DR GeneID; 899150; -. DR KEGG; heo:C694_00890; -. DR KEGG; hpy:HP0179; -. DR PATRIC; 20591581; VBIHelPyl33062_0190. DR eggNOG; ENOG4108REA; Bacteria. DR eggNOG; COG1136; LUCA. DR KO; K02003; -. DR OMA; ATMLKPN; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0179-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07249.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07249.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 213 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 213 AA; 23484 MW; 6998E90C13A8A84D CRC64; MIKAINISHA FEKPLYNGVN LHIKPKESLA ILGVSGSGKS TLLSHLATML KPNSGTISLL EHQDIYALNS KKLLELRRLK VGIIFQSHYL FKGFSALENL QVASILAKQE INHSLLEQLG IAHTLKQGVG ELSGGQQQRL SIARVLSKKP KIIIADEPTG NLDTTSANQV ISMLQNYITE KEGALVLATH DEHLAFTCSQ VYRLEKEVLI KEK // ID O25464_HELPY Unreviewed; 440 AA. AC O25464; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=N-acetylmuramoyl-L-alanine amidase (AmiA) {ECO:0000313|EMBL:AAD07820.1}; GN OrderedLocusNames=HP_0772 {ECO:0000313|EMBL:AAD07820.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07820.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07820.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07820.1; -; Genomic_DNA. DR PIR; D64616; D64616. DR RefSeq; NP_207565.1; NC_000915.1. DR RefSeq; WP_000961130.1; NC_018939.1. DR ProteinModelPortal; O25464; -. DR IntAct; O25464; 1. DR STRING; 85962.HP0772; -. DR PaxDb; O25464; -. DR EnsemblBacteria; AAD07820; AAD07820; HP_0772. DR GeneID; 898764; -. DR KEGG; heo:C694_03965; -. DR KEGG; hpy:HP0772; -. DR PATRIC; 20592833; VBIHelPyl33062_0805. DR eggNOG; ENOG4105C5C; Bacteria. DR eggNOG; COG0860; LUCA. DR KO; K01448; -. DR OMA; SHAIESK; -. DR OrthoDB; EOG6CP3X3; -. DR BioCyc; HPY:HP0772-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008745; F:N-acetylmuramoyl-L-alanine amidase activity; IEA:InterPro. DR GO; GO:0009253; P:peptidoglycan catabolic process; IEA:InterPro. DR Gene3D; 3.40.630.40; -; 2. DR InterPro; IPR002508; CW_Hdrlase/autolysin_cat. DR Pfam; PF01520; Amidase_3; 1. DR SMART; SM00646; Ami_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 278 433 Ami_3. {ECO:0000259|SMART:SM00646}. SQ SEQUENCE 440 AA; 50075 MW; A57D857ABB82514D CRC64; MLVRLGVVAC LFWLHYAYAT TLKITNVVPF GSSSVKMVFN QEVKKFKEVS LKNFKSYLEL EAILTIPKKH YQFSKQSFIT IAQFSPKLVR VVIGYAPKMT YEVKILKDKL YVSIVEKKPL IRHQMALKPP KHHALKHTTP KPAHKPIKKE AKKVKEKTPT KHAHSKHTHS PLNERSTKKE IPKKEIPKKE AENESKNQVF IAEKNDTFIK TKRKKHKKIV LDAGHGGKDC GAMSANLVCE KDIVLEVVKF LHKELKKRDY SVLLTRDKDI YIDLVARTEL ANKKSADLFI SVHANSIPKH STSNAHGIET YFLSTARSER ARKVAEQENK DDVNLMDYFS KSLFLNSLNT QRLIVSNKLA IDVQYGMLQS VRKNYPDVVD GGVREGPFWV LAGALMPSIL IEIGYNSHAI ESKRIQSKPY QKILAKGIAD GIDSFFSKND // ID O25341_HELPY Unreviewed; 375 AA. AC O25341; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 105. DE SubName: Full=Solute-binding signature and mitochondrial signature protein (AspB) {ECO:0000313|EMBL:AAD07687.1}; GN OrderedLocusNames=HP_0624 {ECO:0000313|EMBL:AAD07687.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07687.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07687.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3EZS} RP X-RAY CRYSTALLOGRAPHY (2.19 ANGSTROMS). RG Joint Center for Structural Genomics (JCSG); RT "Crystal structure of aminotransferase AspB (NP_207418.1) from RT HELICOBACTER PYLORI 26695 at 2.19 A resolution."; RL Submitted (OCT-2008) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07687.1; -; Genomic_DNA. DR PIR; H64597; H64597. DR RefSeq; NP_207418.1; NC_000915.1. DR RefSeq; WP_000142409.1; NC_018939.1. DR PDB; 3EZS; X-ray; 2.19 A; A/B=1-375. DR PDBsum; 3EZS; -. DR ProteinModelPortal; O25341; -. DR STRING; 85962.HP0624; -. DR PaxDb; O25341; -. DR DNASU; 899030; -. DR EnsemblBacteria; AAD07687; AAD07687; HP_0624. DR GeneID; 899030; -. DR KEGG; heo:C694_03230; -. DR KEGG; hpy:HP0624; -. DR PATRIC; 20592531; VBIHelPyl33062_0654. DR eggNOG; ENOG4105CHM; Bacteria. DR eggNOG; COG0436; LUCA. DR OMA; ILINDEC; -. DR OrthoDB; EOG6CP3SM; -. DR BioCyc; HPY:HP0624-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3EZS}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 24 338 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. FT REGION 90 91 Phosphate binding. FT {ECO:0000213|PDB:3EZS}. FT REGION 227 229 Phosphate binding. FT {ECO:0000213|PDB:3EZS}. FT BINDING 54 54 Phosphate. {ECO:0000213|PDB:3EZS}. FT BINDING 238 238 Phosphate. {ECO:0000213|PDB:3EZS}. SQ SEQUENCE 375 AA; 43125 MW; 262EE78985E66683 CRC64; MTFEPYPFER LRALLKEITP KKRGLDLGIG EPQFETPKFI QDALKNHTHS LNIYPKSAFE ESLRAAQRGF FKRRFKIELK ENELISTLGS REVLFNFPSF VLFDYQNPTI AYPNPFYQIY EGAAKFIKAK SLLMPLTKEN DFTPSLNEKE LQEVDLVILN SPNNPTGRTL SLEELISWVK LALKHDFILI NDECYSEIYE NTPPPSLLEA CMLAGNEAFK NVLVIHSLSK RSSAPGLRSG FIAGDSRLLE KYKAFRAYLG YTSANAIQKA SEAAWLDDRH AEFFRNIYAN NLKLARKIFK NTLIYPYSFY VYLPVQNGEN FAKTLYQNEG IITLPALYLG RNRIGADYVR LALVYDTPLL EKPLEIIETY RENHA // ID O25370_HELPY Unreviewed; 383 AA. AC O25370; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 97. DE RecName: Full=Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; DE Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992}; DE EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992}; DE AltName: Full=Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; DE AltName: Full=Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; GN Name=mqnC {ECO:0000256|HAMAP-Rule:MF_00992}; GN OrderedLocusNames=HP_0656 {ECO:0000313|EMBL:AAD07721.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07721.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07721.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Radical SAM enzyme that catalyzes the cyclization of CC dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine CC futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, CC vitamin K2). {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- CATALYTIC ACTIVITY: Dehypoxanthine futalosine + S-adenosyl-L- CC methionine = cyclic dehypoxanthinyl futalosine + 5'-deoxyadenosine CC + L-methionine. {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00992, CC ECO:0000256|PIRSR:PIRSR004762-1}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|HAMAP-Rule:MF_00992, ECO:0000256|PIRSR:PIRSR004762- CC 1}; CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. MqnC family. CC {ECO:0000256|HAMAP-Rule:MF_00992}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07721.1; -; Genomic_DNA. DR PIR; H64601; H64601. DR RefSeq; NP_207450.1; NC_000915.1. DR RefSeq; WP_000113573.1; NC_000915.1. DR ProteinModelPortal; O25370; -. DR STRING; 85962.HP0656; -. DR PaxDb; O25370; -. DR PRIDE; O25370; -. DR EnsemblBacteria; AAD07721; AAD07721; HP_0656. DR GeneID; 900224; -. DR KEGG; hpy:HP0656; -. DR PATRIC; 20592597; VBIHelPyl33062_0687. DR eggNOG; ENOG4105DKF; Bacteria. DR eggNOG; COG1060; LUCA. DR KO; K11784; -. DR OMA; MNEAEMI; -. DR OrthoDB; EOG6SV55P; -. DR BioCyc; HPY:HP0656-MONOMER; -. DR UniPathway; UPA00079; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046992; F:oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond; IEA:UniProtKB-HAMAP. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00992; MqnC; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR022431; Cyclic_DHFL_synthase_mqnC. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR020050; FO_synthase_su2. DR InterPro; IPR005244; FO_synthase_su2-like. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004762; CHP00423; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR03699; menaquin_MqnC; 1. DR TIGRFAMs; TIGR00423; TIGR00423; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00992, ECO:0000256|PIRSR:PIRSR004762- KW 1}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_00992}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00992}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}. FT DOMAIN 71 291 Elp3. {ECO:0000259|SMART:SM00729}. FT METAL 81 81 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 85 85 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 88 88 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. SQ SEQUENCE 383 AA; 43423 MW; 4E50170A27D72A9C CRC64; MARNVKGYAS TLTWTITRNT LNFLWEQGFK MRINREEILD LMKNAPLKEL GQRALRVKQR LHPENLTTFI VDRNINYTNI CFVDCKFCAF KRTLKEKDAY VLSYEEIDQK IEELLAIGGT QILFQGGVHP QLKIDYYENL VSHIAQKFPT ITIHGFSAVE IDYISKISKL SLKEVLERLK NAGLSSIPGA GAEVLSDRVR DVIAPKKLSS DRWIEVHRMA HLCGIKSTAT MMFGSVDNEE DVVEHLQRVR DLQDETGGFR AFILWSFQPN NTPLKEEIPS IKKASSNRYL RYLACSRIFL DNIQNIQSSW VTQGSMIGQL ALLFGANDLG SVMMEENVVK AAGTSFCMNE AGMIELIEDI GSVAAKRNTA YEILKRYPAK AKV // ID O25263_HELPY Unreviewed; 522 AA. AC O25263; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Cag pathogenicity island protein (Cag8) {ECO:0000313|EMBL:AAD07595.1}; GN OrderedLocusNames=HP_0528 {ECO:0000313|EMBL:AAD07595.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07595.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07595.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07595.1; -; Genomic_DNA. DR PIR; H64585; H64585. DR RefSeq; NP_207324.1; NC_000915.1. DR RefSeq; WP_000529349.1; NC_018939.1. DR ProteinModelPortal; O25263; -. DR DIP; DIP-3400N; -. DR IntAct; O25263; 10. DR MINT; MINT-168354; -. DR STRING; 85962.HP0528; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25263; -. DR EnsemblBacteria; AAD07595; AAD07595; HP_0528. DR GeneID; 900045; -. DR KEGG; heo:C694_02725; -. DR KEGG; hpy:HP0528; -. DR PATRIC; 20592331; VBIHelPyl33062_0554. DR eggNOG; ENOG4108PCE; Bacteria. DR eggNOG; COG3504; LUCA. DR KO; K12093; -. DR OMA; FILRIAQ; -. DR OrthoDB; EOG6JHRH9; -. DR BioCyc; HPY:HP0528-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR010258; Conjugal_tfr_TrbG/VirB9/CagX. DR InterPro; IPR004357; IVSec_CagX. DR Pfam; PF03524; CagX; 2. DR PRINTS; PR01556; TYPE4SSCAGX. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 26 {ECO:0000256|SAM:SignalP}. FT CHAIN 27 522 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157725. FT COILED 138 186 {ECO:0000256|SAM:Coils}. FT COILED 200 241 {ECO:0000256|SAM:Coils}. FT COILED 316 343 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 522 AA; 60625 MW; 119BAC8F53949F9A CRC64; MGQAFFKKIV GCFCLGYLFL SSAIEAAALD IKNFNRGRVK VVNKKIAYLG DEKPITIWTS LDNVTVIQLE KDETISYITT GFNKGWSIVP NSNHIFIQPK SVKSNLMFEK EAVNFALMTR DYQEFLKTKK LIVDAPDPKE LEEQKKALEK EKEAKEQAQK AQKDKREKRK EERAKNRANL ENLTNAMSNP QNLSNNKNLS EFIKQQRENE LDQMERLEDM QEQAQANALK QIEELNKKQA EETIKQRAKD KINIKTDKPQ KSPEDNSIEL SPSDSAWRTN LVVRTNKALY QFILRIAQKD NFASAYLTVK LEYPQRHEVS SVIEEELKKR EEAKRQKELI KQENLNTTAY INRVMMASNE QIINKEKIRE EKQKIILDQA KALETQYVHN ALKRNPVPRN YNYYQAPEKR SKHIMPSEIF DDGTFTYFGF KNITLQPAIF VVQPDGKLSM TDAAIDPNMT NSGLRWYRVN EIAEKFKLIK DKALVTVINK GYGKNPLTKN YNIKNYGELE RVIKKLPLVR DK // ID O25085_HELPY Unreviewed; 130 AA. AC O25085; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07385.1}; GN OrderedLocusNames=HP_0316 {ECO:0000313|EMBL:AAD07385.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07385.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07385.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07385.1; -; Genomic_DNA. DR PIR; D64559; D64559. DR RefSeq; NP_207114.1; NC_000915.1. DR RefSeq; WP_001134066.1; NC_018939.1. DR ProteinModelPortal; O25085; -. DR DIP; DIP-3335N; -. DR IntAct; O25085; 3. DR MINT; MINT-176006; -. DR STRING; 85962.HP0316; -. DR PaxDb; O25085; -. DR EnsemblBacteria; AAD07385; AAD07385; HP_0316. DR GeneID; 898815; -. DR KEGG; heo:C694_01595; -. DR KEGG; hpy:HP0316; -. DR PATRIC; 20591859; VBIHelPyl33062_0327. DR OMA; KIPNIQT; -. DR OrthoDB; EOG6PP9QD; -. DR BioCyc; HPY:HP0316-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 15 64 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 130 AA; 15304 MW; B2FF991677300C81 CRC64; MPNTTAKKDY TKYSEKQLFN LIHQLERKIK KMQNDRISFK EKMAKELEKR DQNFKDKIDA LNELLQKISQ AFDDKRDCCL GHEIPNIETQ QAMRDALNGI NLTQIDSLDD FTNELKRENS KGFENVCFSV // ID O25635_HELPY Unreviewed; 107 AA. AC O25635; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08033.1}; GN OrderedLocusNames=HP_0985 {ECO:0000313|EMBL:AAD08033.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08033.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08033.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08033.1; -; Genomic_DNA. DR PIR; A64643; A64643. DR RefSeq; NP_207776.1; NC_000915.1. DR RefSeq; WP_010875574.1; NC_000915.1. DR ProteinModelPortal; O25635; -. DR PaxDb; O25635; -. DR PRIDE; O25635; -. DR EnsemblBacteria; AAD08033; AAD08033; HP_0985. DR GeneID; 899518; -. DR KEGG; hpy:HP0985; -. DR BioCyc; HPY:HP0985-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 91 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 107 AA; 12441 MW; C7C2921F49A0D50C CRC64; MGRWFLGAIV IKIILGFCGK ILPCRLCLEN LSLLPESFDS FSHVYKGKRL QKRLVLRCFH HYYSNDSLIF HSQSLFLVSF FPCCFLFFFC FTAKRMALMP CVSLALV // ID O25229_HELPY Unreviewed; 314 AA. AC O25229; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE RecName: Full=Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; DE EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296}; GN OrderedLocusNames=HP_0485 {ECO:0000313|EMBL:AAD07551.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07551.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07551.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Has an organic peroxide-dependent peroxidase activity. CC {ECO:0000256|PIRNR:PIRNR000296}. CC -!- COFACTOR: CC Name=heme; Xref=ChEBI:CHEBI:30413; CC Evidence={ECO:0000256|PIRNR:PIRNR000296}; CC -!- SIMILARITY: Belongs to the catalase family. CC {ECO:0000256|PIRNR:PIRNR000296}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07551.1; -; Genomic_DNA. DR PIR; E64580; E64580. DR RefSeq; NP_207282.1; NC_000915.1. DR RefSeq; WP_000719571.1; NC_018939.1. DR ProteinModelPortal; O25229; -. DR STRING; 85962.HP0485; -. DR PaxDb; O25229; -. DR EnsemblBacteria; AAD07551; AAD07551; HP_0485. DR GeneID; 899254; -. DR KEGG; heo:C694_02495; -. DR KEGG; hpy:HP0485; -. DR PATRIC; 20592245; VBIHelPyl33062_0511. DR eggNOG; ENOG4105CH6; Bacteria. DR eggNOG; COG0753; LUCA. DR KO; K03781; -. DR OMA; ANTPYYS; -. DR OrthoDB; EOG6742T3; -. DR BioCyc; HPY:HP0485-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004096; F:catalase activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006979; P:response to oxidative stress; IEA:InterPro. DR Gene3D; 2.40.180.10; -; 1. DR InterPro; IPR018028; Catalase. DR InterPro; IPR020835; Catalase-like_dom. DR InterPro; IPR011614; Catalase_core. DR InterPro; IPR024168; Catalase_SrpA-type_pred. DR PANTHER; PTHR11465; PTHR11465; 1. DR Pfam; PF00199; Catalase; 1. DR PIRSF; PIRSF000296; SrpA; 1. DR SMART; SM01060; Catalase; 1. DR SUPFAM; SSF56634; SSF56634; 1. DR PROSITE; PS51402; CATALASE_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Heme {ECO:0000256|PIRNR:PIRNR000296}; KW Iron {ECO:0000256|PIRNR:PIRNR000296}; KW Metal-binding {ECO:0000256|PIRNR:PIRNR000296}; KW Oxidoreductase {ECO:0000256|PIRNR:PIRNR000296}; KW Peroxidase {ECO:0000256|PIRNR:PIRNR000296}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 314 Catalase-related peroxidase. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158552. FT DOMAIN 20 314 Catalase. {ECO:0000259|SMART:SM01060}. SQ SEQUENCE 314 AA; 35783 MW; 80AD26D95B89E1AE CRC64; MKKIGLSLCL VLSLGFLKAH EVSAEEIADI FYKLNAKEPK MKINHTKGFC AKGVFLPNAQ AKKDLDVPLL NEKEIPASVR YSLGGVAMDD KSKVRGMALK LENQNASWTM VMLNTEINFA KNPNEFAQFF EMRIPKNGKV DEARIKKLYE EVPSYRNFAA YTKTIGISSS VANTPYYSVH AFRFKDKKGK LLPARWKFVP KEGIKYLNPQ ELKQKDSNYL LSAFQQHLKT KPIEYQMYLV FANKNDATND TTALWKGKHK ELLVGTLKVE KYEGMGCNKD VYFPADLPKG VEAPTDPLFQ IRNEVYGITF SRRQ // ID O25831_HELPY Unreviewed; 153 AA. AC O25831; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08281.1}; GN OrderedLocusNames=HP_1233 {ECO:0000313|EMBL:AAD08281.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08281.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08281.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08281.1; -; Genomic_DNA. DR PIR; A64674; A64674. DR RefSeq; NP_208025.1; NC_000915.1. DR RefSeq; WP_000301306.1; NC_018939.1. DR ProteinModelPortal; O25831; -. DR IntAct; O25831; 1. DR STRING; 85962.HP1233; -. DR PaxDb; O25831; -. DR EnsemblBacteria; AAD08281; AAD08281; HP_1233. DR GeneID; 898790; -. DR KEGG; heo:C694_06365; -. DR KEGG; hpy:HP1233; -. DR PATRIC; 20593837; VBIHelPyl33062_1289. DR OMA; PVNGLHK; -. DR OrthoDB; EOG6NPM7Z; -. DR BioCyc; HPY:HP1233-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 153 AA; 17360 MW; EBDE1C32FA904129 CRC64; MAVSSINQFD SNLYGLLNAK SAPKEDLAPI ESTEKVEREK KDAPTENLPF DPDKRETYGF LVLELMSDRE YEAFLRATAG MDESQKRLAA QSLYSLTDFY NGKFSKEVEN APKQPINGLH KKALQTFNAT NHNAFLQRYQ NAYNNPSTMD VIL // ID O25326_HELPY Unreviewed; 477 AA. AC O25326; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07673.1}; GN OrderedLocusNames=HP_0605 {ECO:0000313|EMBL:AAD07673.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07673.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07673.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07673.1; -; Genomic_DNA. DR PIR; E64595; E64595. DR RefSeq; NP_207400.1; NC_000915.1. DR RefSeq; WP_001092132.1; NC_018939.1. DR ProteinModelPortal; O25326; -. DR DIP; DIP-3070N; -. DR IntAct; O25326; 7. DR MINT; MINT-172763; -. DR STRING; 85962.HP0605; -. DR PaxDb; O25326; -. DR EnsemblBacteria; AAD07673; AAD07673; HP_0605. DR GeneID; 899981; -. DR KEGG; heo:C694_03130; -. DR KEGG; hpy:HP0605; -. DR PATRIC; 20592489; VBIHelPyl33062_0633. DR eggNOG; ENOG4108X5B; Bacteria. DR eggNOG; COG1538; LUCA. DR OMA; VDFTTYL; -. DR OrthoDB; EOG6GFGFR; -. DR BioCyc; HPY:HP0605-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR InterPro; IPR003423; OMP_efflux. DR Pfam; PF02321; OEP; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 477 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157729. SQ SEQUENCE 477 AA; 54587 MW; AE3F9735FE9371F9 CRC64; MNTIIRYASL WGLCAALTLA QTPSKTPDEI KQILNNYSHK NLKLIDPPTS SLEATPSFLS SPKETATTIN QEIAKYHEKS DKAALGLYEL LKGATTNLSL QAQELSVKQA MKNHTIAKAM FLPTLNASYN FKNEARDTPE YKHYNTQQLQ AQVTLNVFNG FSDVNNVKEK SATYRSNVAN LEYSRQSVYL QVVQQYYEYF NNLARMIALQ KKLEQIKTDI KRVTKLYDKG LTTIDDLQSL KAQGNLSEYD ILDMQFALEQ NRLTLEYLTN LSVKNLKKTT IDAPNLQLRE RQDLVSLREQ ISAIRYQNKQ LNYYPKIDVF DSWLFWIQKP AYATGRFGNF YPGQQNTAGV TATLNIFDDI GLSLQKQSIM LGQLANEKNL AYKKLEQEKD EQLYRKSLDI ARAKIESSKA SLDAANLSFA NIKRKYDANL VDFTTYLRGL TTRFDAEVAY NLALNNYEVQ KANYIFNSGH KIDDYVH // ID O25314_HELPY Unreviewed; 1001 AA. AC O25314; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Type III restriction enzyme R protein (Res) {ECO:0000313|EMBL:AAD07657.1}; GN OrderedLocusNames=HP_0592 {ECO:0000313|EMBL:AAD07657.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07657.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07657.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07657.1; -; Genomic_DNA. DR PIR; H64593; H64593. DR RefSeq; NP_207387.1; NC_000915.1. DR RefSeq; WP_010875499.1; NC_000915.1. DR ProteinModelPortal; O25314; -. DR DIP; DIP-3230N; -. DR IntAct; O25314; 4. DR MINT; MINT-179538; -. DR STRING; 85962.HP0592; -. DR REBASE; 4911; HpyAXIP. DR PaxDb; O25314; -. DR PRIDE; O25314; -. DR EnsemblBacteria; AAD07657; AAD07657; HP_0592. DR GeneID; 898972; -. DR KEGG; hpy:HP0592; -. DR PATRIC; 20592461; VBIHelPyl33062_0619. DR eggNOG; ENOG4105D8D; Bacteria. DR eggNOG; COG3587; LUCA. DR KO; K01156; -. DR OMA; ANDIKMI; -. DR OrthoDB; EOG6MPWQ7; -. DR BioCyc; HPY:HP0592-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF04851; ResIII; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 69 255 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. SQ SEQUENCE 1001 AA; 114810 MW; 1817F729A96F48B1 CRC64; MGCVFTNFRL RRSQTPKAKT PMIFEKQDYQ QECIYNIITL LDGFDFKRHD ALNLKDCLNQ FHAACEIPVK NVSGKLNVDV LMETGTGKTF TYLNLIFALH KAYGQNKFII FVPRKAILES VKQNIRLTKD YFYLEFKRHL KTYTYEGVKS PSNIINHYIK NQDELSVLLL TNSAIDKEGN ILNKNSENLF NTKSIFENIA DLKPISIIDE PHLLKGEAFG KYFGKIGALY FRFGATFAKE KEHALSNVAF CLDSISAFRN YLVKQIRIHS VMQDAQSPFL LNADSKSAKI AFYKAGILKQ ITLSKGEDLG KINASFNGVS LVKTAKDKAY LSNGATLEKA SYKLAQDEIS ALLEKAIDLH FEKEAFLFDQ NIKALSLFFI PKIEDFRQID NKGTPFIKTE FERLYKLKRA SILARENLSP SYKEYLKRDF DESGNLRVHQ GYFSGDSVAL NKGKKESKKE DIEANDIKMI LSEKEKLLSF QTPLRFIFSV WALQEGWDNP NIFTLIKLAN STSETSRHQQ VGRGLRIAIN QEGKRVTHGF LKGNDNAFYK INYLDMLVSG EEVGFIEGLQ KEIEASSFIG GGNALDREDL AKLGLNEREI NKLFVELENS NALEFDETNN AYKIIAPICE TMQNNEERIK DFLSDEEYHA VLSAFKMAEN PTNKRDQIIN ANQPQEKVKI RQNLAKEFKE LWQTINAQSQ LSYQNIQKTK LIESIAKAFN ESHVSAEVIK FESKRYDPQT NRIITEQSST LKIRDYANAL QKEINALLLD FAKDERLPLK FTLELYNALN KEHFTNSPKK AFKLLKGIIK DKLHENLLSC VSYGFCQNAF SNTAFDKTDP LYCEDGSPKN EIEKHKIGKY KSAQTPSPNY LYETIIYDSK IEEEVSEEGV QTLEGKSIEV FAKLPKFKIP TPYKNYEPDF AYLLKDEKGA KIFFVCETKG YEKESDIPPD EKRKIEYAKK FFETLSQNLK NAKKEIRVVF ATRINKQDLF NTLKNALKET P // ID O24898_HELPY Unreviewed; 69 AA. AC O24898; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07135.1}; GN OrderedLocusNames=HP_0057 {ECO:0000313|EMBL:AAD07135.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07135.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07135.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07135.1; -; Genomic_DNA. DR PIR; A64527; A64527. DR RefSeq; NP_206858.1; NC_000915.1. DR RefSeq; WP_000849034.1; NC_018939.1. DR ProteinModelPortal; O24898; -. DR IntAct; O24898; 3. DR PaxDb; O24898; -. DR EnsemblBacteria; AAD07135; AAD07135; HP_0057. DR GeneID; 898738; -. DR KEGG; heo:C694_00270; -. DR KEGG; hpy:HP0057; -. DR PATRIC; 20591315; VBIHelPyl33062_0059. DR OMA; KKEVQYT; -. DR OrthoDB; EOG6M6JSR; -. DR BioCyc; HPY:HP0057-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 69 AA; 7678 MW; A9BA98487213A7F0 CRC64; MKTIKNGMMI GTLGALLLSG CSSFDAQRFA CIPKDHSLKD ASTKKEVQYT PKGFFDPYSS NLNHWDSTF // ID O25920_HELPY Unreviewed; 260 AA. AC O25920; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_1367 {ECO:0000313|EMBL:AAD08411.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08411.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08411.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08411.1; -; Genomic_DNA. DR PIR; G64690; G64690. DR RefSeq; NP_208159.1; NC_000915.1. DR RefSeq; WP_000602620.1; NC_018939.1. DR ProteinModelPortal; O25920; -. DR SMR; O25920; 1-250. DR STRING; 85962.HP1367; -. DR REBASE; 56828; M1.Hpy26695ORF7055P. DR PaxDb; O25920; -. DR EnsemblBacteria; AAD08411; AAD08411; HP_1367. DR GeneID; 900316; -. DR KEGG; heo:C694_07055; -. DR KEGG; hpy:HP1367; -. DR PATRIC; 20594123; VBIHelPyl33062_1432. DR eggNOG; ENOG4108M6F; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00571; -. DR OMA; VHESLEM; -. DR OrthoDB; EOG6FV84T; -. DR BioCyc; HPY:HP1367-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 23 248 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 260 AA; 30471 MW; D99A3A232DA6D0A2 CRC64; MILNKIYIED VFTFLDKLED KSVDLAIIDP PYNLKIASWD SFKNDEEFLT FSYAWIDKML PKLKDTGSFY IFNTPFNCAL FLAYLHHKKV HFLNFITWVK KDGFANAKKR YNHAQESILF YSMHKKNYTF NADEIRIAYE SAERIKHAQS KGILKNNKRW FPNPKGKLCL DVWEITSQRH VEKEKGKILK PKHPSIKPKA LIERMIKASS HKNDLILDLF SGSGMTSLVA KSLERNFIGC ESHAEYVHGS LEMFRYNECE // ID O25416_HELPY Unreviewed; 124 AA. AC O25416; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07770.1}; GN OrderedLocusNames=HP_0712 {ECO:0000313|EMBL:AAD07770.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07770.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07770.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07770.1; -; Genomic_DNA. DR PIR; H64608; H64608. DR RefSeq; WP_010875530.1; NC_018939.1. DR ProteinModelPortal; O25416; -. DR DIP; DIP-3489N; -. DR IntAct; O25416; 14. DR MINT; MINT-161857; -. DR STRING; 85962.HP0712; -. DR PaxDb; O25416; -. DR PRIDE; O25416; -. DR DNASU; 898995; -. DR EnsemblBacteria; AAD07770; AAD07770; HP_0712. DR PATRIC; 20592711; VBIHelPyl33062_0744. DR eggNOG; COG3177; LUCA. DR OMA; TTPIFKC; -. DR OrthoDB; EOG6S52MX; -. DR BioCyc; HPY:HP0712-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.3290.10; -; 1. DR InterPro; IPR003812; Fido. DR SUPFAM; SSF140931; SSF140931; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 124 AA; 14448 MW; 68DEF8F878E9740C CRC64; MNYKELLEFN DYAMDLTIRM AHHSTAIENN PLSLAETISI LTTEYIPREM PQRAFFEVKN YQNMLFFLLE NLNKGQSVDS FFIRELHGIL MNFLLPNKGA FKTTDNTILG ASFETTPIFK CLWL // ID O25426_HELPY Unreviewed; 305 AA. AC O25426; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07776.1}; GN OrderedLocusNames=HP_0726 {ECO:0000313|EMBL:AAD07776.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07776.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07776.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07776.1; -; Genomic_DNA. DR PIR; F64610; F64610. DR RefSeq; NP_207520.1; NC_000915.1. DR RefSeq; WP_000532530.1; NC_018939.1. DR ProteinModelPortal; O25426; -. DR DIP; DIP-3177N; -. DR IntAct; O25426; 1. DR MINT; MINT-179477; -. DR STRING; 85962.HP0726; -. DR PaxDb; O25426; -. DR EnsemblBacteria; AAD07776; AAD07776; HP_0726. DR GeneID; 898917; -. DR KEGG; heo:C694_03735; -. DR KEGG; hpy:HP0726; -. DR PATRIC; 20592739; VBIHelPyl33062_0758. DR OMA; HIYLGFR; -. DR OrthoDB; EOG60KN1T; -. DR BioCyc; HPY:HP0726-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}. FT CHAIN 24 305 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157737. FT TRANSMEM 232 250 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 305 AA; 34075 MW; A043710AA0027507 CRC64; MGRIESKKRL KALVFLASLG VLWGNSAEKT PFFKTKNHIY LGFRLGTGAN VHTSMWQQAY KDNPTCPGSV CYGEKLEAHY QGGKNLSYTG QIGDEIAFDK HHILGLRVWG DVEYAKAQLG QKVGGNTLLS QANYDPNAIK TYDSASNTQG PLVLQKTPSP QNFLFNNGHF MAFGLNVNVF VNLPIDTLLK LALKTEKMLF FKIGVFGGGG VEYAILWSPN YQNQNTKQGD KFFAAGGGFF VNFGGSLYIG KRNRFNVGLK IPYYSLSAQS WKNFGSSNVW QQQTIRQNFS VFRNKEVFVS YAFLF // ID O25243_HELPY Unreviewed; 54 AA. AC O25243; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07570.1}; GN OrderedLocusNames=HP_0502 {ECO:0000313|EMBL:AAD07570.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07570.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07570.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07570.1; -; Genomic_DNA. DR PIR; F64582; F64582. DR ProteinModelPortal; O25243; -. DR STRING; 85962.HP0502; -. DR REBASE; 17367; M.HpyAORF503P. DR PaxDb; O25243; -. DR PRIDE; O25243; -. DR EnsemblBacteria; AAD07570; AAD07570; HP_0502. DR PATRIC; 20592279; VBIHelPyl33062_0528. DR OMA; TAYGNKE; -. DR BioCyc; HPY:HP0502-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 54 AA; 6264 MW; 5304EB39411A1196 CRC64; MNLGVYYTPP YLVDCAYKLL KKHVGIEKYT LLDTACGNKE FLKLQHPKKN RSGY // ID O25977_HELPY Unreviewed; 82 AA. AC O25977; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08488.1}; GN OrderedLocusNames=HP_1436 {ECO:0000313|EMBL:AAD08488.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08488.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08488.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08488.1; -; Genomic_DNA. DR PIR; D64699; D64699. DR RefSeq; NP_208227.1; NC_000915.1. DR RefSeq; WP_000752241.1; NC_018939.1. DR ProteinModelPortal; O25977; -. DR IntAct; O25977; 1. DR STRING; 85962.HP1436; -. DR PaxDb; O25977; -. DR EnsemblBacteria; AAD08488; AAD08488; HP_1436. DR GeneID; 899859; -. DR KEGG; heo:C694_07435; -. DR KEGG; hpy:HP1436; -. DR PATRIC; 20594275; VBIHelPyl33062_1507. DR OMA; TDWIFIL; -. DR OrthoDB; EOG6PW26Z; -. DR BioCyc; HPY:HP1436-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 82 AA; 9599 MW; 7AF6FEBAFE6B6B15 CRC64; MACKFCPKIR KTDWIFILIA ALGFYAVNKL GYVPQFNTPT SKISRSIEKP DNMTEEERKK RFIELQKACL LHKDKKACEE VF // ID O24998_HELPY Unreviewed; 108 AA. AC O24998; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07277.1}; GN OrderedLocusNames=HP_0206 {ECO:0000313|EMBL:AAD07277.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07277.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07277.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07277.1; -; Genomic_DNA. DR PIR; F64545; F64545. DR ProteinModelPortal; O24998; -. DR STRING; 85962.HP0206; -. DR PaxDb; O24998; -. DR EnsemblBacteria; AAD07277; AAD07277; HP_0206. DR KEGG; heo:C694_01030; -. DR PATRIC; 20591633; VBIHelPyl33062_0216. DR OMA; ADIKLCN; -. DR OrthoDB; EOG676Z6W; -. DR BioCyc; HPY:HP0206-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 108 AA; 12395 MW; B4866ABB6BB3F888 CRC64; MEFYKRVLKL HHFRNLGRKS PVELPLNSSF EKHGGLVILV GENNVGKSNV LKALTIFNDA DIKLCNEEDY FKPHEKDSLL SLEEETILDH KITGFSCVDL RIQSKEII // ID G5EB01_HELPY Unreviewed; 217 AA. AC G5EB01; DT 14-DEC-2011, integrated into UniProtKB/TrEMBL. DT 14-DEC-2011, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=NAD(P)H-flavin oxidoreductase {ECO:0000313|EMBL:AAD07703.1}; GN OrderedLocusNames=HP_0642 {ECO:0000313|EMBL:AAD07703.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07703.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07703.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07703.1; -; Genomic_DNA. DR PIR; B64600; B64600. DR RefSeq; NP_207436.1; NC_000915.1. DR RefSeq; WP_000373527.1; NC_018939.1. DR ProteinModelPortal; G5EB01; -. DR SMR; G5EB01; 2-217. DR STRING; 85962.HP0642; -. DR PaxDb; G5EB01; -. DR EnsemblBacteria; AAD07703; AAD07703; HP_0642. DR GeneID; 899300; -. DR KEGG; heo:C694_03320; -. DR KEGG; hpy:HP0642; -. DR eggNOG; ENOG4108RCM; Bacteria. DR eggNOG; COG0778; LUCA. DR OMA; CLAEEGL; -. DR OrthoDB; EOG65QWJJ; -. DR BioCyc; HPY:HP0642-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 12 176 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 217 AA; 25293 MW; 07330EC11ACB7AA6 CRC64; MDREQVVALQ HQRFAAKKYD PNRRISQKDW EALVEVGRLA PSSIGLEPWK MLLLKNERMK EDLKPMAWGA LFGLEGASHF VIYLARKGVT YDSDYVKKVM HEVKKRDYDT NSRFAQIIKN FQENDMKLNS ERSLFDWASK QTYIQMANMM MAAAMLGIDS CPIEGYDQEK VEAYLEEKGY LNTAEFGVSV MACFGYRNQE ITPKTRWKTE VIYEVIE // ID O24890_HELPY Unreviewed; 330 AA. AC O24890; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07122.1}; GN OrderedLocusNames=HP_0049 {ECO:0000313|EMBL:AAD07122.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07122.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07122.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2CMU} RP X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS) OF 2-330. RA R Rajashankar K., Kniewel R., Solorzano V., Lima C.D.; RT "Crystal Structure of a Putative Peptidyl-Arginine Deiminase."; RL Submitted (MAY-2006) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07122.1; -; Genomic_DNA. DR PIR; A64526; A64526. DR RefSeq; NP_206850.1; NC_000915.1. DR RefSeq; WP_000827275.1; NC_018939.1. DR PDB; 2CMU; X-ray; 2.50 A; A=2-330. DR PDBsum; 2CMU; -. DR ProteinModelPortal; O24890; -. DR SMR; O24890; 1-330. DR STRING; 85962.HP0049; -. DR PaxDb; O24890; -. DR EnsemblBacteria; AAD07122; AAD07122; HP_0049. DR GeneID; 899173; -. DR KEGG; heo:C694_00225; -. DR KEGG; hpy:HP0049; -. DR PATRIC; 20591297; VBIHelPyl33062_0050. DR eggNOG; ENOG4105DWY; Bacteria. DR eggNOG; COG2957; LUCA. DR KO; K10536; -. DR OMA; EVLLAWT; -. DR OrthoDB; EOG6M3PB5; -. DR BioCyc; HPY:HP0049-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004668; F:protein-arginine deiminase activity; IEA:InterPro. DR GO; GO:0009446; P:putrescine biosynthetic process; IEA:InterPro. DR InterPro; IPR007466; Peptidyl-Arg-deiminase_porph. DR Pfam; PF04371; PAD_porph; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2CMU}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 330 AA; 37549 MW; D77DD2A388BC184F CRC64; MKRMLAEFEK IQAILMAFPH EFSDWAYCIK EARESFLNII QTIAKHAKVL VCVHTNDIIG YETLKNLPGV EIARIDTNDT WARDFGAISV ENHGVLECLD FGFNGWGLKY PSNLDNQVNF KLKSLGFLKH PLKTMPYILE GGSIESDGAG SVLTNTQCLL EKNRNPHLNQ NGIENMLKKE LGAKQVLWYS YGYLKGDDTD SHTDTLARFL DKDTIVYSTC EDENDEHYTA LKKMQEELKT FKKLDGTPYK LIPLEIPKAI FDENQQRLPA TYVNFLLCNN ALIVPTYNDP KDALILETLK QHTPLEVIGV DCNTLIKQHG SLHCVTMQLY // ID O25884_HELPY Unreviewed; 125 AA. AC O25884; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08376.1}; GN OrderedLocusNames=HP_1326 {ECO:0000313|EMBL:AAD08376.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08376.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08376.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08376.1; -; Genomic_DNA. DR PIR; F64685; F64685. DR RefSeq; NP_208118.1; NC_000915.1. DR RefSeq; WP_000731617.1; NC_018939.1. DR ProteinModelPortal; O25884; -. DR DIP; DIP-3424N; -. DR IntAct; O25884; 3. DR MINT; MINT-171833; -. DR STRING; 85962.HP1326; -. DR PaxDb; O25884; -. DR EnsemblBacteria; AAD08376; AAD08376; HP_1326. DR GeneID; 899079; -. DR KEGG; heo:C694_06845; -. DR KEGG; hpy:HP1326; -. DR PATRIC; 20594033; VBIHelPyl33062_1387. DR eggNOG; ENOG4106BRS; Bacteria. DR eggNOG; ENOG410Y0JE; LUCA. DR OMA; KGDNTFI; -. DR OrthoDB; EOG6RRKVG; -. DR BioCyc; HPY:HP1326-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032693; YtkA-like_dom. DR Pfam; PF13115; YtkA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 125 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158059. FT DOMAIN 26 107 YtkA. {ECO:0000259|Pfam:PF13115}. SQ SEQUENCE 125 AA; 13829 MW; A9A0E3673CA9F819 CRC64; MKKLAALFLV SVLGVMGLNA WEQTLKANDL EVKIKSVGNP IKGDNTFILS PTLKGKALEK AIVRVQFMMP EMPGMPAMKE MAQVSEKNGL YEAKTNLSMN GTWQVRVDIK SKEGQVYRAK TSLDL // ID O25921_HELPY Unreviewed; 287 AA. AC O25921; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_1368 {ECO:0000313|EMBL:AAD08412.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08412.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08412.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08412.1; -; Genomic_DNA. DR PIR; H64690; H64690. DR RefSeq; NP_208160.1; NC_000915.1. DR RefSeq; WP_001024629.1; NC_018939.1. DR ProteinModelPortal; O25921; -. DR STRING; 85962.HP1368; -. DR REBASE; 56827; M2.Hpy26695ORF7055P. DR PaxDb; O25921; -. DR DNASU; 900315; -. DR EnsemblBacteria; AAD08412; AAD08412; HP_1368. DR GeneID; 900315; -. DR KEGG; heo:C694_07060; -. DR KEGG; hpy:HP1368; -. DR PATRIC; 20594125; VBIHelPyl33062_1433. DR eggNOG; ENOG4108M6F; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00590; -. DR OMA; MNINKVF; -. DR OrthoDB; EOG6MSS08; -. DR BioCyc; HPY:HP1368-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0015667; F:site-specific DNA-methyltransferase (cytosine-N4-specific) activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR017985; MeTrfase_CN4_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00093; N4_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 22 277 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 287 AA; 33517 MW; 912B987A6ADA0653 CRC64; MNINKVFYHS STNMNEVPDN SVDLIITSPP YFNIKDYAKN GTQDLQHSAQ HVEDLGALEK YEDYLLGLLK VWLECYRALK PNGKLCINVP LMPMLKKVLN THYNRHIFDL HADIQHSILH DLNNMLKNKP KMFLLDVYIW KRANPTKRLM FGSYPYPRNF YAQNTIEFIG VFVKDGKPKQ PTEEQKEQSQ LTQEEWVEFT KQIWEIPIPN KNDIAFGKHA ALMPAELARR LIRLYSCVGD VVLDPFSGSG TTLREAKLLK RNFIGYELYE NYKPLIEQKL GNLFDFE // ID O25908_HELPY Unreviewed; 835 AA. AC O25908; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Putative adenine specific DNA methyltransferase {ECO:0000313|EMBL:AAD08396.1}; GN OrderedLocusNames=HP_1354 {ECO:0000313|EMBL:AAD08396.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08396.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08396.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08396.1; -; Genomic_DNA. DR PIR; B64689; B64689. DR RefSeq; WP_010875614.1; NC_018939.1. DR ProteinModelPortal; O25908; -. DR STRING; 85962.HP1354; -. DR REBASE; 56832; Hpy26695ORF6980P. DR PaxDb; O25908; -. DR EnsemblBacteria; AAD08396; AAD08396; HP_1354. DR KEGG; heo:C694_06990; -. DR PATRIC; 20594095; VBIHelPyl33062_1418. DR eggNOG; ENOG4105EN3; Bacteria. DR eggNOG; COG4889; LUCA. DR OMA; CQYRPFD; -. DR OrthoDB; EOG6RC3JN; -. DR BioCyc; HPY:HP1354-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD08396.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08396.1}. FT DOMAIN 297 489 N6_Mtase. {ECO:0000259|Pfam:PF02384}. SQ SEQUENCE 835 AA; 96964 MW; 4E9AC9F7D4FAD2B6 CRC64; MLKEYLESIK DLTPEKNELT HRPSLYNLLN QLKNHFNKEF KIEHEPERKQ GSQPDFRVSY QGINIGYIEN KRAGTNLSQL LKSEKSDQIL KYLELNPNLM LTDYLNFMWV GKDENNEPLI KKEISVASLD ELSKPLKPNP QTERDLIELF KSFFNHEAAP ITNAKDFATH LSPRTKYLKD ALIKYQEKAQ VSSIFNNFKE YLYEELSFED FSDALAQTLT YSLFLAKLNH PSEKINLDNV RSLIPKNFAV IREMADFLKK LDEIKEIQWL LNEILSSINH VDMDSILKDL NDDKDPYLHF YETFLSTYDP KLRESKGVYY TPDSVVKFII NALDSLLKTH FKDAPLGLKS ALDNENIKLL DFATGTGTFL LEAFRKALET RKTSDGGTST KEDKYQNLLK QFYGFEYLIA PYAIAHLNLS QAFKEEFKKP LKENDALQII LTNTLIQPSE IIAYRGLSPI FEKELSNAQE IKKNENILII TGNPPYSGAS ENKGLFEWEV KATYGIDPKF QTIEIEKNVK LADKIQTLLS SVQIQKQSGS KNDLKKLKSL HSKYKLQDEK NPKWLLDDYV KFMRFAQNKI ESLGHGLFGF ISNNAFLDNP TFRGLRRSLL ECYDELYILN LHGNARKKEK TPQGAKDENV FNIKQGVSIN LFVKNPQVVK QKIHYYDVYG QRTEKYAFLA QNDLNSIEWL EIAPRGPFYL LLPLETPLLD EYEQGFSVQE MFQIGSTGIC SQRDHVVFHK DKESLLKLLK DFSTLEPSEL RRIYNIKKDG RDWRLEYAIK DVKANANNLE EYIVSCQYRP FDFYYTYYTG KSKSFIAYPR GEVFKHMLPP PPNKP // ID O25495_HELPY Unreviewed; 148 AA. AC O25495; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07872.1}; GN OrderedLocusNames=HP_0817 {ECO:0000313|EMBL:AAD07872.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07872.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07872.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07872.1; -; Genomic_DNA. DR PIR; A64622; A64622. DR RefSeq; NP_207610.1; NC_000915.1. DR RefSeq; WP_001081241.1; NC_000915.1. DR ProteinModelPortal; O25495; -. DR DIP; DIP-3760N; -. DR IntAct; O25495; 14. DR MINT; MINT-183832; -. DR STRING; 85962.HP0817; -. DR PaxDb; O25495; -. DR EnsemblBacteria; AAD07872; AAD07872; HP_0817. DR GeneID; 898782; -. DR KEGG; heo:C694_04185; -. DR KEGG; hpy:HP0817; -. DR PATRIC; 20592921; VBIHelPyl33062_0849. DR OMA; MKPIFLL; -. DR OrthoDB; EOG6X6RFN; -. DR BioCyc; HPY:HP0817-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 148 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158029. SQ SEQUENCE 148 AA; 17007 MW; 906E6146C1821084 CRC64; MNRMNKNYLL IFLLLASLVA REKDASSNLF DLIDKGINRE QELKEQEQKT RLKLAQSPLV ALEIVPQETP YLEWQGARES YYLKVSAVVE SVVILKIDIN QGRSCSLYPT PKSVSLVRNQ SVAYEILCEN QPLWIEVSTN LGKRTFQF // ID O25200_HELPY Unreviewed; 1021 AA. AC O25200; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07519.1}; GN OrderedLocusNames=HP_0453 {ECO:0000313|EMBL:AAD07519.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07519.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07519.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07519.1; -; Genomic_DNA. DR PIR; E64576; E64576. DR RefSeq; NP_207251.1; NC_000915.1. DR RefSeq; WP_000362588.1; NC_018939.1. DR ProteinModelPortal; O25200; -. DR DIP; DIP-3494N; -. DR IntAct; O25200; 1. DR MINT; MINT-168887; -. DR STRING; 85962.HP0453; -. DR PaxDb; O25200; -. DR EnsemblBacteria; AAD07519; AAD07519; HP_0453. DR GeneID; 900065; -. DR KEGG; heo:C694_02300; -. DR KEGG; hpy:HP0453; -. DR PATRIC; 20592165; VBIHelPyl33062_0471. DR eggNOG; ENOG41082TJ; Bacteria. DR eggNOG; ENOG410ZJJD; LUCA. DR OMA; DGRFKNF; -. DR OrthoDB; EOG67Q962; -. DR BioCyc; HPY:HP0453-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR018633; DUF2357. DR Pfam; PF09823; DUF2357; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 69 181 DUF2357. {ECO:0000259|Pfam:PF09823}. SQ SEQUENCE 1021 AA; 120114 MW; D688694561694469 CRC64; MDLEELYAPN HIERLKARSF LRSIAFFDDF SASFEYRDLF SVLENIVQFD YEKKPYKDDL YFLCKFVEPA LKAIFSNLNT NIYRKHLKMP LEKAREFDAK CALDLAKRPG RSLKEKLCDN KVLSVKRYVN ANTHENRFLK RFIKELLRII HWREIEFQQV FEELIFSITS FLKNGVAQQI DEKQAIIPNN LLHFDKHYKR IFKAHDWLYD GVGSLMNLDQ IFYLECLYQA QFYTSKNIEP TLIRNEQDLY ALIKNSFPIK DLSFEKMRLK AKEFFENELR QPINLDQEIP QLELCKGVYK EMYIDMFSPE PFALLVGNGN EEKILKLPLL VKKQENNTYI NANGAKGKID EKGYLANALK NYDETLVEAF MRDFKERYKI EKLYYLLDDN IKNFEFAKIK HKISLYFKDA KFYPKSVALG FSSLFENKLK KNERLRYNSV DLVVKENHKS KTFNDCGLVL ERQKSDDSKE FLILQDSFIK KALKNFKRAL GLEKEGFILY KECLPKLSME VVKDGRFKNF EIIKDKTILG DKETLEIETP FIIPKGRESF ALPLILNEEK IAYQGKITSK DFPLENDEEY KLTLTYDIGT EFNYVLEFKP VNNDLKPIVM EWQRIDRVEL PTPDSIKKPS IDELKNDFNP KRGKSSDLFE WALEQLETLK DLNSPPRFVL EKKLECGGIS IIGEDRNNEL FYIMETNGKK VFCHSRQCKG SVNKDELSLG ARVCLEVGPD KNDHGKYRGK IYGLEKNREI VLLNTAKNSY QRKPLDEKIK HRIEALKRIK YPCLKIFSHY MLEELETLNP EFATPFKEYL KRLEEYYFDP QTDRDFKKGL LDFFSRLNDS IPAKLQQEFI NLPSTDFLSR CLGSLEKDFQ KTIFKKLKVT NLKTLSIVAR ASWNNEKFLE NLMAQTSLEQ QKDFLKRIEE CLKNPESFYF SSACELLLAF LSYRNAKREL ELIPESEKTM RLLDSIDKAI EKETEIKSFV KLELKNQSFN NIPPLLSALR LYLRGDLEGV GIEINGTEED E // ID O25331_HELPY Unreviewed; 1943 AA. AC O25331; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Toxin-like outer membrane protein {ECO:0000313|EMBL:AAD07675.1}; GN OrderedLocusNames=HP_0610 {ECO:0000313|EMBL:AAD07675.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07675.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07675.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07675.1; -; Genomic_DNA. DR PIR; B64596; B64596. DR ProteinModelPortal; O25331; -. DR DIP; DIP-3150N; -. DR IntAct; O25331; 13. DR MINT; MINT-162094; -. DR STRING; 85962.HP0610; -. DR PaxDb; O25331; -. DR PRIDE; O25331; -. DR EnsemblBacteria; AAD07675; AAD07675; HP_0610. DR PATRIC; 20592499; VBIHelPyl33062_0638. DR eggNOG; COG5651; LUCA. DR OrthoDB; EOG6RVFRD; -. DR BioCyc; HPY:HP0610-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005546; Autotransporte_beta. DR InterPro; IPR004311; Vacuolating_cytotoxin_put. DR Pfam; PF03077; VacA2; 2. DR SMART; SM00869; Autotransporter; 1. DR SUPFAM; SSF103515; SSF103515; 1. DR PROSITE; PS51208; AUTOTRANSPORTER; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1668 1943 Autotransporter (TC 1.B.12). FT {ECO:0000259|PROSITE:PS51208}. SQ SEQUENCE 1943 AA; 212964 MW; 1F8F79107F34A70A CRC64; MQFTQSNGQK FVFEETFNPG SITYKYFTIH SSLFHTDADS KDIWSQVRKQ FDFIPGKTPV CVGVCYIAPY KNQDLIGSSA FAWSLNFGAT VVGTLLLGSA QEKANNNGGS IWFGKNNLLY LHGNFNATNI FLTNNFNVGN PNAGGGATIN FNADETLNAD GLNYTNFQTV ALGLQTSASQ HSWANFNSKL SMEIKNSNFR DFTWGGFNFN SGRITFENTT FSGWTNINGA TESGSSYVNM VANTDLIFSN SILGGGIRYD LKANNIIFNN SQMVIDVSKN VNQSSLNGNV TFNNSRLSVK PNAAINIGDS QTQTALENAS SLSFYNNSVA NFNGTTAFNG VSYLNLNPNA QVSFNQVNFN NANVTFYGIP LFGKTPDFGN SARLINFKGN TNFNQATLNL RAKNIHINFQ GVSTFKQNST MNLAESSQAS FNALKVEGET NFNLNNSSLL NFNGNSVFNA PVSFYANHSQ ISFTKLATFN SDASFDLSNN STLNFQSVLL NGALNLLGNG SNNLAINAKG NFSFGSKGIL NLSYMNLFGG DKKTSVYDVL QAQNIDGLMG NNGYEKIRFY GIQIDKADYS FDNGVHSWRF TNPLNTTETI TETLHNNRLK VQISQNGVSN NKMFNLAPSL YDYQKNPYNE TENSYNYTSD KVGTYYLTSN IKGFNQNNKT PGTYNAQNQP LQALHIYNQA ITKQDLNMIA SLGKEFLPKI ANLLSSGALD NLNSPNSFET LFGIFEKYGI TLNQENWKSL LKIINNFSNT TNYDFSQGNL VVGAIKEGQT NTKSVVWFGG EGYKEPCAVG DNTCQMFRQT NLGQLLHSST PYLGYINANF RAKNIYITGT IGSGNAWGSG GSANVSFESG TNLVLNQAKI DAQGTDKIFS YLGQGGIEKL FGEKGLGNAL SNIIYEESLN DNAIPKDLAN MIPKDFGSKT LSSLLSPTEV NNLLGVSAFK NAIMEILNSK TVGDVFGENG LLNALDPTER KKIDQMLLEQ IQAHSSGFEK FIVKTLGIEN VENFINNWYG KQSLSSFANN FVPGGLNQAL DKIGSSSDAK DLQNFLDKTT FGDILNQMIE QAPLINKLIS WLGPQDLSVL VNIALNSITN PSKELTSTIS SIGEKALNDL LGDGVVNKIM SNQVLGQMIN KIIADKGFGG VYQQGLGSIL PQSLQDELKK LGMGSLLGSR GLHNLWQRGN FNFVAKDYLF TNNSSFSNAT GGELNFVAGK SIIFNGKNTI NFTQYQGKLS FISKDFSNIS LDTLNATNGL TLNAPKNDIS VQKGQICVNV LNCMGEKKAH SSSATAPTNE TLEANANNFA FLGAIKANGL VDFSKVLQNT TIGTLDLGPN ATFKANHLIV NNAFNNNSNY RADISGNLNV VKGAALSTNE NGLNVGGDFK SEGSLIFNLN NKTNQTIINV AGNSTIMSYN NQALIHFNTQ LKQGAYTLIN AKRMLYGYDN QIIRGGSLSD YLKLYTLIDF NGKRMQLNGD SLSYDNQPVN IKDGGLVVSF KDNQGQMVYS SILYDKVQVS VSDKPMDIHA PSLEYYIKYI QGSAGLDAIK SAGNNSILWL NELFVAKGGN PLFAPYYLQD NPTEHIVTLM KDITSALGML SKPNLKNNST DALQLNTYTQ QMSRLAKLSN FASFDSTDFS ERLSSLKNQR FADAIPNAMD VILKYSQRDK LKNNLWATGV GGVSFVENGT GTLYGVNVGY DRFIKGVIVG GYAAYGYSGF YERITNSKSD NVDVGLYARA FIKKSELTFS VNETWGANKN QISSNDTLLS MINQSYKYST WTTNAKVNYG YDFMFKNKSI ILKPQIGLRY YYIGMTGLEG VMHNALYNQF KANADPSKKS VLTIELALEN RHYFNTNSYF YAIGGFGRDL LVNSMGDKLV RFIGNNTLSY RKGELYNTFA SITTGGEVRL FKSFYANAGV GARFGLDYKM INITGNIGMR LAF // ID O25965_HELPY Unreviewed; 304 AA. AC O25965; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 84. DE SubName: Full=Conjugative transfer regulon protein (TrbB) {ECO:0000313|EMBL:AAD08463.1}; GN OrderedLocusNames=HP_1421 {ECO:0000313|EMBL:AAD08463.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08463.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08463.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08463.1; -; Genomic_DNA. DR PIR; E64697; E64697. DR RefSeq; NP_208212.1; NC_000915.1. DR RefSeq; WP_000854872.1; NC_018939.1. DR ProteinModelPortal; O25965; -. DR DIP; DIP-3731N; -. DR IntAct; O25965; 3. DR MINT; MINT-169065; -. DR STRING; 85962.HP1421; -. DR PaxDb; O25965; -. DR DNASU; 899874; -. DR EnsemblBacteria; AAD08463; AAD08463; HP_1421. DR GeneID; 899874; -. DR KEGG; heo:C694_07350; -. DR KEGG; hpy:HP1421; -. DR PATRIC; 20594241; VBIHelPyl33062_1490. DR eggNOG; ENOG4108JB6; Bacteria. DR eggNOG; COG0630; LUCA. DR KO; K03196; -. DR OMA; LMINTEQ; -. DR OrthoDB; EOG6JMMWM; -. DR BioCyc; HPY:HP1421-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001482; T2SS_protein-E. DR Pfam; PF00437; T2SSE; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 22 289 T2SP_E. {ECO:0000259|Pfam:PF00437}. SQ SEQUENCE 304 AA; 34667 MW; B7845872786906A3 CRC64; MKTLQTHRVL QALIGHFTPF LESGITELMI NTEQELWLYK VNNTREKRGH ALFDKAFLLR FCEQLASFRG LFFDEEHPTL NCSIPFTRYR VSANHFSITT NNQITLNIRV PRLKPLSLED FTFKASDPKS LKDLALKGHN ILISGETSSG KTSLLNALLD CVNKDERVVS VEDSQELDLK AFSNCVGLLV GKQENTRFNY EDALNMAMRL NPDRLIVGEI DTRNAALFLR LGNTGHKGML STIHANSAQN TLEALSLNLS MRYMYSLDKD LMRAYFKSAI DVIVHVNRIN NERQIAEVLW TKEL // ID O24996_HELPY Unreviewed; 127 AA. AC O24996; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07275.1}; GN OrderedLocusNames=HP_0204 {ECO:0000313|EMBL:AAD07275.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07275.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07275.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07275.1; -; Genomic_DNA. DR PIR; D64545; D64545. DR RefSeq; NP_207003.1; NC_000915.1. DR RefSeq; WP_000473912.1; NC_018939.1. DR ProteinModelPortal; O24996; -. DR STRING; 85962.HP0204; -. DR PaxDb; O24996; -. DR EnsemblBacteria; AAD07275; AAD07275; HP_0204. DR GeneID; 900132; -. DR KEGG; heo:C694_01020; -. DR KEGG; hpy:HP0204; -. DR PATRIC; 20591629; VBIHelPyl33062_0214. DR OMA; PKFGDKF; -. DR OrthoDB; EOG67DPNH; -. DR BioCyc; HPY:HP0204-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 127 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158544. SQ SEQUENCE 127 AA; 14551 MW; 7D7DE317D1CB1CF6 CRC64; MFKKMCLSLL MISGVCVGAK DLDFKLDYRA TGGKLMGKMT DSSLLSITSM NDEPVVIKNL IVNRGNSCEA TKKVEPKLGD KFKKEKLFDH ELKYSQQIFY RLDCKPNQLL EVKIITDKGE YYHKFSK // ID O25442_HELPY Unreviewed; 419 AA. AC O25442; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 100. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07801.1}; GN OrderedLocusNames=HP_0746 {ECO:0000313|EMBL:AAD07801.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07801.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07801.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07801.1; -; Genomic_DNA. DR PIR; B64613; B64613. DR RefSeq; NP_207539.1; NC_000915.1. DR RefSeq; WP_001863449.1; NC_000915.1. DR ProteinModelPortal; O25442; -. DR DIP; DIP-3632N; -. DR IntAct; O25442; 2. DR MINT; MINT-183568; -. DR STRING; 85962.HP0746; -. DR PaxDb; O25442; -. DR DNASU; 898850; -. DR EnsemblBacteria; AAD07801; AAD07801; HP_0746. DR GeneID; 898850; -. DR KEGG; heo:C694_03840; -. DR KEGG; hpy:HP0746; -. DR PATRIC; 20592781; VBIHelPyl33062_0779. DR eggNOG; ENOG4107Y58; Bacteria. DR eggNOG; COG3401; LUCA. DR KO; K06882; -. DR OMA; WSPHPNP; -. DR OrthoDB; EOG6Z3KFK; -. DR BioCyc; HPY:HP0746-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 2.60.40.10; -; 4. DR InterPro; IPR003961; FN3_dom. DR InterPro; IPR013783; Ig-like_fold. DR SMART; SM00060; FN3; 4. DR SUPFAM; SSF49265; SSF49265; 2. DR PROSITE; PS50853; FN3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 419 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157738. FT DOMAIN 47 140 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 142 234 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 328 419 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. SQ SEQUENCE 419 AA; 48083 MW; 158791426C38B95D CRC64; MRSWMKKKYF TLLLQSSVVL AVFIGCSSTR NHTFSALNNQ ENIDTNLPVV HSIKTINDVS SVGFEWPKIA DTYDIDGFIL YRLKKDSKLK RIATIKNPYA THYYDEGLET ESSYTYQLAT YKGDKISNLS DPILVKTSFI NPVESVFASL EYPKSVKVFW SPHPNPSVSK YIIQRQNKDG KFLNVGAVRN RLFVEFFDKD LEDGKKYRYQ VIAENFMGDK SRPSVIVEGK TKDLPKEITN VRVSQNLTRH IELSWDKSTQ EDVIAYRIYA SNNRNDKYKF IAQTTNTSYV DKIEKDNLTR YYKVVALDKT HLEGALPKEP AMGETADRPE APIITKGTIQ DSSALIQWEN NPSAKIATYA VYRFEANSKT PLRFGNITKN QFVDKDMKVG VAYRYQVVSV DKDGLESHPS KEVRLFLER // ID O25240_HELPY Unreviewed; 442 AA. AC O25240; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE RecName: Full=Transporter {ECO:0000256|RuleBase:RU003732}; GN OrderedLocusNames=HP_0498 {ECO:0000313|EMBL:AAD07563.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07563.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07563.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the sodium:neurotransmitter symporter (SNF) CC (TC 2.A.22) family. {ECO:0000256|RuleBase:RU003732}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07563.1; -; Genomic_DNA. DR PIR; B64582; B64582. DR RefSeq; NP_207295.1; NC_000915.1. DR RefSeq; WP_000514571.1; NC_018939.1. DR ProteinModelPortal; O25240; -. DR STRING; 85962.HP0498; -. DR PaxDb; O25240; -. DR EnsemblBacteria; AAD07563; AAD07563; HP_0498. DR GeneID; 900056; -. DR KEGG; heo:C694_02560; -. DR KEGG; hpy:HP0498; -. DR PATRIC; 20592271; VBIHelPyl33062_0524. DR eggNOG; ENOG4105C8J; Bacteria. DR eggNOG; COG0733; LUCA. DR KO; K03308; -. DR OMA; MTLESMP; -. DR OrthoDB; EOG6PGK51; -. DR BioCyc; HPY:HP0498-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005328; F:neurotransmitter:sodium symporter activity; IEA:InterPro. DR InterPro; IPR000175; Na/ntran_symport. DR PANTHER; PTHR11616; PTHR11616; 1. DR Pfam; PF00209; SNF; 2. DR PRINTS; PR00176; NANEUSMPORT. DR PROSITE; PS50267; NA_NEUROTRAN_SYMP_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Symport {ECO:0000256|RuleBase:RU003732}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003732}. FT TRANSMEM 37 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 156 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 168 187 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 214 235 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 303 328 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 340 357 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 378 400 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 420 439 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 442 AA; 49643 MW; 3133BDD0509241E5 CRC64; MGKFSKLGFI LATLGSSIGL GHIWRFPYMV GHNGGSAFVL LYLVLTLSLG IAMLLVEMLI GNLGKKDVVS NYQILDPKRK KYYPFTSFFI LGGPLILSFY AVVLGWVLYY LFVVTFDLPK DLEQAKMQFS MLQNGSLIWP VIGFSACLLP TIWFVSRGIE EGIEKLNVVL MPLLFVIFIG LLIYAMTLES MPKALHFLFN FEIQKIDFKV VMDALGQMFF SLSLGVGTII TYSAFTPKKE NLFKSSLFIV LPGILISLIA GVMIFTFVFE YHADVSQGPG LVFISLPLTF AKMGMSGQIV SLFFFMALVF AGITSTVSLI EPLALYLINR FNFSRLQASL WIGVVVYVLG VLVILSMNER YAKFLSFAHK SVFGWLDFIT SSFLMPLGGL FSVLFIGWIL NKKRSFLATK HFFNANAFKA WHFSVRFIAP VVILAIFILQ FK // ID O25508_HELPY Unreviewed; 102 AA. AC O25508; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07894.1}; GN OrderedLocusNames=HP_0837 {ECO:0000313|EMBL:AAD07894.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07894.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07894.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07894.1; -; Genomic_DNA. DR PIR; E64624; E64624. DR ProteinModelPortal; O25508; -. DR DIP; DIP-3535N; -. DR IntAct; O25508; 2. DR MINT; MINT-165171; -. DR STRING; 85962.HP0837; -. DR PaxDb; O25508; -. DR PRIDE; O25508; -. DR DNASU; 898848; -. DR EnsemblBacteria; AAD07894; AAD07894; HP_0837. DR PATRIC; 20592967; VBIHelPyl33062_0871. DR eggNOG; COG3018; LUCA. DR OrthoDB; EOG6DJZ3R; -. DR BioCyc; HPY:HP0837-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR024952; Lipo_LPP20-like. DR Pfam; PF02169; LPP20; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 102 AA; 11229 MW; 43E1B3997CC64FE1 CRC64; MGMGVAPEST ISPSQALALA KRAAIVDGYR QLGEKMYGIR VNAQDTVKDM VLQNSVIKTR VNALIRNAEI TETIYKDGLC QVSMELKLDG RIWYRILSGA RG // ID O25293_HELPY Unreviewed; 366 AA. AC O25293; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 105. DE SubName: Full=GTP-binding protein (Gtp1) {ECO:0000313|EMBL:AAD07637.1}; GN OrderedLocusNames=HP_0569 {ECO:0000313|EMBL:AAD07637.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07637.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07637.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07637.1; -; Genomic_DNA. DR PIR; A64591; A64591. DR RefSeq; NP_207364.1; NC_000915.1. DR RefSeq; WP_000524601.1; NC_018939.1. DR ProteinModelPortal; O25293; -. DR SMR; O25293; 1-366. DR DIP; DIP-3545N; -. DR IntAct; O25293; 3. DR MINT; MINT-187680; -. DR STRING; 85962.HP0569; -. DR PaxDb; O25293; -. DR EnsemblBacteria; AAD07637; AAD07637; HP_0569. DR GeneID; 900035; -. DR KEGG; heo:C694_02935; -. DR KEGG; hpy:HP0569; -. DR PATRIC; 20592411; VBIHelPyl33062_0594. DR eggNOG; ENOG4105C3G; Bacteria. DR eggNOG; COG0012; LUCA. DR KO; K06942; -. DR OMA; CTIEPNI; -. DR OrthoDB; EOG6NSGJC; -. DR BioCyc; HPY:HP0569-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0043023; F:ribosomal large subunit binding; IEA:UniProtKB-HAMAP. DR GO; GO:0043022; F:ribosome binding; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.150.300; -; 1. DR Gene3D; 3.10.20.30; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00944; YchF_OLA1_ATPase; 1. DR InterPro; IPR004396; ATPase_YchF/OLA1. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR013029; DUF933. DR InterPro; IPR031167; G_OBG. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR012676; TGS-like. DR InterPro; IPR023192; TGS-like_dom. DR Pfam; PF01926; MMR_HSR1; 1. DR Pfam; PF06071; YchF-GTPase_C; 1. DR PIRSF; PIRSF006641; CHP00092; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF81271; SSF81271; 1. DR TIGRFAMs; TIGR00092; TIGR00092; 1. DR PROSITE; PS51710; G_OBG; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 259 OBG-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51710}. FT COILED 131 165 {ECO:0000256|SAM:Coils}. FT COILED 215 246 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 366 AA; 40575 MW; AC0AD958078CBDC6 CRC64; MGLSVGIVGL PNVGKSSTFN ALTKTQNAQS ANYPFCTIEP NKAIVNVPDR RLDALAQIVK PERILHSVVE FVDIAGLIKG ASKGEGLGNQ FLANIKECEV ILQVVRCFED DNITHVNDKI DPLNDIETIE LELILADIAA LDKRIDRLQK ALKSSKDAKN LLECALSLKT HLEELKPAKT FPLNTSEAFL ELDKELRFLS HKKMIYVANV GEEDLNALNE HAKKVKNHAK EQNSEFVALC AKLEEEMVSM SGDEVKEFLQ SLGVEESGLE KTIRLSFKEL GLINYFTAGV KEVRSWTIKK GSSAPVAAGV IHKDFEKGFI RAETISYDDF IAYKGEAGAK EKGALRIEGK DYIVQDGDVL HFRFNI // ID O25036_HELPY Unreviewed; 431 AA. AC O25036; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Outer membrane protein (Omp8) {ECO:0000313|EMBL:AAD07320.1}; GN OrderedLocusNames=HP_0254 {ECO:0000313|EMBL:AAD07320.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07320.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07320.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07320.1; -; Genomic_DNA. DR PIR; F64551; F64551. DR ProteinModelPortal; O25036; -. DR DIP; DIP-3270N; -. DR IntAct; O25036; 2. DR MINT; MINT-186228; -. DR STRING; 85962.HP0254; -. DR PaxDb; O25036; -. DR PRIDE; O25036; -. DR EnsemblBacteria; AAD07320; AAD07320; HP_0254. DR PATRIC; 20591735; VBIHelPyl33062_0265. DR OMA; YINYTIG; -. DR OrthoDB; EOG6NSGCK; -. DR BioCyc; HPY:HP0254-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 431 AA; 47556 MW; 0939C33D24D50236 CRC64; MALAEDDGFY MGVGYQIGGA QQNIDNKGST LRNNVINNFR QVGVGMAGGN GLLALATNTT MDALLGIGNQ IVNTNTTVSN NNAELTQFKK ILPQIEQRFE TNKNAYSVQA LQVYLSNVLY NLVNNSNNGS NNGVVPEYVG IIKVLYGSQN EFSLLATESV VLLNALTRVN LDSNSVFLKG LLAQMQLFND TSSAKLGQIA ENLKNGGAGS MLQKDVKTIS DRIATYQENL KQLGGMLKNY DEPYLPQFGP GTSSQHGVIN GFGIQVGYKQ FFGNKRNIGL RYYAFFDYGF TQLGSLSSAV KANIFTYGAG TDFLWNIFRR VFSDQSLNVG VFGGIQIAGN TWDSSLRGQI ENSFKEYPTP TNFQFLFNLG LRAHFASTMH RRFLSASQSI QHGMEFGVKI PAINQRYLRA NGADVDYRRL YAFYINYTIG F // ID O25421_HELPY Unreviewed; 109 AA. AC O25421; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07775.1}; GN OrderedLocusNames=HP_0719 {ECO:0000313|EMBL:AAD07775.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07775.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07775.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07775.1; -; Genomic_DNA. DR PIR; G64609; G64609. DR ProteinModelPortal; O25421; -. DR STRING; 85962.HP0719; -. DR PaxDb; O25421; -. DR PRIDE; O25421; -. DR EnsemblBacteria; AAD07775; AAD07775; HP_0719. DR PATRIC; 20592725; VBIHelPyl33062_0751. DR OrthoDB; EOG6N3CTX; -. DR BioCyc; HPY:HP0719-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR009488; DUF1104. DR Pfam; PF06518; DUF1104; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 109 AA; 12240 MW; 4F094021567EFD58 CRC64; MVKCQNLLSS CGKNLDNKGL GMRRSLAFYL LALLGLQVLG ARDFSQLKNE ELLKLAGTLP SNEAIDYRME VSKRLKTLNA EDAKKFRANF SRIARKNLSK MSEGFQKNA // ID O25811_HELPY Unreviewed; 81 AA. AC O25811; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08267.1}; GN OrderedLocusNames=HP_1211 {ECO:0000313|EMBL:AAD08267.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08267.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08267.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08267.1; -; Genomic_DNA. DR PIR; C64671; C64671. DR ProteinModelPortal; O25811; -. DR IntAct; O25811; 1. DR STRING; 85962.HP1211; -. DR PaxDb; O25811; -. DR PRIDE; O25811; -. DR EnsemblBacteria; AAD08267; AAD08267; HP_1211. DR BioCyc; HPY:HP1211-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 81 AA; 8907 MW; 3F76A9035DFCC57D CRC64; MVPKVGLEPT RDCSHQILSL ACLPIPPLRR IYRAKSEIIP TYSLKKLNGA LGETRTRTRL LPPPPQDGVS TNSTTSAKNL K // ID O24891_HELPY Unreviewed; 232 AA. AC O24891; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_0050 {ECO:0000313|EMBL:AAD07116.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07116.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07116.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07116.1; -; Genomic_DNA. DR PIR; B64526; B64526. DR RefSeq; NP_206851.1; NC_000915.1. DR RefSeq; WP_000614886.1; NC_018939.1. DR ProteinModelPortal; O24891; -. DR DIP; DIP-3048N; -. DR IntAct; O24891; 2. DR MINT; MINT-186022; -. DR STRING; 85962.HP0050; -. DR REBASE; 56876; M1.Hpy26695ORF230P. DR PaxDb; O24891; -. DR EnsemblBacteria; AAD07116; AAD07116; HP_0050. DR GeneID; 899178; -. DR KEGG; heo:C694_00230; -. DR KEGG; hpy:HP0050; -. DR PATRIC; 20591299; VBIHelPyl33062_0051. DR eggNOG; ENOG4108I7A; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00571; -. DR OMA; ISYIADF; -. DR OrthoDB; EOG6FV84T; -. DR BioCyc; HPY:HP0050-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07116.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07116.1}. FT DOMAIN 23 227 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 232 AA; 27103 MW; 436D4021CF85F9AC CRC64; MIQIYHADAF EIIKDFYQQN LKVDAIITDP PYNISVKNNF PTLKSAKRQG IDFGEWDKNF KLLEWIARYA PLVNPNGCMV IFCSYRFISY IADFLEENGF VVKDFIQWVK NNPMPRNIHR RYVQDTEFAL WAVKKKAKWV FNKPKNEKYL RPLILKSPVV SGLEKTKHPT QKSLALMEKI ISIHTNPNDI VLDPFMGSGT TGLACKNLER NFIGIESEKE YFQTAKKRLN LF // ID O25492_HELPY Unreviewed; 336 AA. AC O25492; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07871.1}; GN OrderedLocusNames=HP_0812 {ECO:0000313|EMBL:AAD07871.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07871.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07871.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07871.1; -; Genomic_DNA. DR PIR; D64621; D64621. DR RefSeq; NP_207605.1; NC_000915.1. DR RefSeq; WP_001256047.1; NC_018939.1. DR ProteinModelPortal; O25492; -. DR IntAct; O25492; 1. DR STRING; 85962.HP0812; -. DR PaxDb; O25492; -. DR EnsemblBacteria; AAD07871; AAD07871; HP_0812. DR GeneID; 899356; -. DR KEGG; heo:C694_04160; -. DR KEGG; hpy:HP0812; -. DR PATRIC; 20592911; VBIHelPyl33062_0844. DR eggNOG; ENOG4107V0X; Bacteria. DR eggNOG; COG1565; LUCA. DR OMA; GDFYTSV; -. DR OrthoDB; EOG6GR36G; -. DR BioCyc; HPY:HP0812-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003788; MidA. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR12049; PTHR12049; 1. DR Pfam; PF02636; Methyltransf_28; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 336 AA; 38539 MW; 5B1F0A1637035602 CRC64; MRSFGNYMQE WLYGEKGYYR KALIGQKGDF YTSVSVSKFF GGAVAFYIIK LLEEEKLFLP LKIVEIGSHH GHFLSDIASF LNALSVGVME QCAFVSCEPL KELQKLQRTI FKQATQLDLM ICDLKDLDFK GHENAFVVSN ELFDAFACEI VKDNKMLFIA HDHKGVWGAI DEPTKELLKN LDLKQGCAPL FLEAFIKDLL EKLNEASSWV FLSFDYGDET ERKDMHLRAF KNHQALDFKD ILNNLASLYQ QSDLTYDVNF SLVRFLFEKH HAQFSFFKTQ ANALLDMGLM GLLETFSKSV GYERYLKEAA KIKPLISPGG LGERFKALEF VKKNKM // ID O25404_HELPY Unreviewed; 168 AA. AC O25404; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07749.1}; GN OrderedLocusNames=HP_0697 {ECO:0000313|EMBL:AAD07749.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07749.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07749.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25544:ruvC; NbExp=3; IntAct=EBI-7513643, EBI-9261745; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07749.1; -; Genomic_DNA. DR PIR; A64607; A64607. DR RefSeq; NP_207491.1; NC_000915.1. DR RefSeq; WP_000245373.1; NC_000915.1. DR ProteinModelPortal; O25404; -. DR DIP; DIP-3080N; -. DR IntAct; O25404; 13. DR MINT; MINT-161582; -. DR STRING; 85962.HP0697; -. DR PaxDb; O25404; -. DR PRIDE; O25404; -. DR DNASU; 898994; -. DR EnsemblBacteria; AAD07749; AAD07749; HP_0697. DR GeneID; 898994; -. DR KEGG; hpy:HP0697; -. DR PATRIC; 20592683; VBIHelPyl33062_0730. DR eggNOG; ENOG4105HKX; Bacteria. DR eggNOG; COG4647; LUCA. DR KO; K10856; -. DR OMA; VIKCSCG; -. DR OrthoDB; EOG6GR38M; -. DR BioCyc; HPY:HP0697-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR016750; Aceto_COase_bsu/gsu. DR Pfam; PF08882; Acetone_carb_G; 1. DR PIRSF; PIRSF019217; Acetone_carboxlyase_gsu; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 168 AA; 19915 MW; 88F619EB22F9F566 CRC64; MVMSKYTQEQ IKNLVEGNLD WNTVLKMLSM PKDHERFQMY LKVLQDKVDF DDKIVLPLGP HLFVVQDAQK KWVIKCSCGH AFCAPEENWK LHANIYVRDT AEKMEEVYPK LLASDTHWQV YREYICPDCG ILLDVEAPTP WYPVIHDFEP DIEVFYKDWL GIQPPERR // ID O25572_HELPY Unreviewed; 514 AA. AC O25572; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07966.1}; GN OrderedLocusNames=HP_0914 {ECO:0000313|EMBL:AAD07966.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07966.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07966.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07966.1; -; Genomic_DNA. DR PIR; B64634; B64634. DR RefSeq; NP_207706.1; NC_000915.1. DR RefSeq; WP_001248496.1; NC_018939.1. DR ProteinModelPortal; O25572; -. DR STRING; 85962.HP0914; -. DR PaxDb; O25572; -. DR EnsemblBacteria; AAD07966; AAD07966; HP_0914. DR GeneID; 899443; -. DR KEGG; heo:C694_04705; -. DR KEGG; hpy:HP0914; -. DR PATRIC; 20593131; VBIHelPyl33062_0951. DR OMA; ANYQDRS; -. DR OrthoDB; EOG6XDGRH; -. DR BioCyc; HPY:HP0914-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 514 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158565. SQ SEQUENCE 514 AA; 58855 MW; E119E22E55441817 CRC64; MRQEKYFLTS SLSLLSFLLC PAEAFDYRFS GRVENFSKIG FNNSQINTKK GIYPTESFID IVTLAQVKVN LLPKGTENHR LSVSLGGAIA AIPYDKTKYD INQANGKIFG SIVENFIGGY HGYFFNKYLG PAYAGTSQSA SYHARPYVVD TAFLRYDYKD VFGFKAGRYE ANIDFMSGSN QGWEVYYQPY KTETQRLRFW WWSSFGRGLA FNSWIYEFFA TVPYLKKGGN PNNSNDFINY GWHGITTTYS YKGLDAQFFY YFAPKTYNAP GFKLVYDTNR NFQNVGFRSQ SMIMTTFPLY YRGWYNPETN TYSLEDSTPH GSLLGRNGVT LNIRQVFWWD NFNWSIGFYN TFGNSDAFLG SHTMPRGNNT SYIGSEISIT TRHAGMIGYD FWDNTAYDGL ADAITNANTF TFYTSVGGIH KRFAWHVFGR VSHANKNALG QVGRANEYSL QFNASYAFTE SILLNFRITY YGARINKGYQ AGYFGAPKFN NPDGDFSANY QDRSYMMTNL TLKF // ID O25705_HELPY Unreviewed; 135 AA. AC O25705; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08112.1}; GN OrderedLocusNames=HP_1065 {ECO:0000313|EMBL:AAD08112.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08112.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08112.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08112.1; -; Genomic_DNA. DR PIR; A64653; A64653. DR RefSeq; NP_207856.1; NC_000915.1. DR RefSeq; WP_000906037.1; NC_018939.1. DR ProteinModelPortal; O25705; -. DR DIP; DIP-3636N; -. DR IntAct; O25705; 2. DR MINT; MINT-164100; -. DR STRING; 85962.HP1065; -. DR PaxDb; O25705; -. DR DNASU; 899600; -. DR EnsemblBacteria; AAD08112; AAD08112; HP_1065. DR GeneID; 899600; -. DR KEGG; heo:C694_05505; -. DR KEGG; hpy:HP1065; -. DR PATRIC; 20593467; VBIHelPyl33062_1114. DR eggNOG; ENOG41061E7; Bacteria. DR eggNOG; ENOG41127CA; LUCA. DR OMA; MLILGHP; -. DR OrthoDB; EOG66QKZN; -. DR BioCyc; HPY:HP1065-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 135 AA; 15513 MW; DBF29DABD83C414A CRC64; MLILGHPLIP SARFVFIKNT DAIHSNTNND IVCFEAHPKN LELAKYCCEN SVHFSVIFLS HKIETDTFFL FNAFKPLYCI FKDIKQAILA QQHATNYLLD SKILFFMDLN DTELWEICAK SQIDGVISKD SLLLK // ID O25894_HELPY Unreviewed; 253 AA. AC O25894; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08390.1}; GN OrderedLocusNames=HP_1336 {ECO:0000313|EMBL:AAD08390.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08390.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08390.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08390.1; -; Genomic_DNA. DR PIR; H64686; H64686. DR RefSeq; NP_208128.1; NC_000915.1. DR RefSeq; WP_001062440.1; NC_018939.1. DR ProteinModelPortal; O25894; -. DR IntAct; O25894; 1. DR STRING; 85962.HP1336; -. DR PaxDb; O25894; -. DR EnsemblBacteria; AAD08390; AAD08390; HP_1336. DR GeneID; 898889; -. DR KEGG; heo:C694_06895; -. DR KEGG; hpy:HP1336; -. DR PATRIC; 20594055; VBIHelPyl33062_1398. DR eggNOG; COG2214; LUCA. DR OMA; LILNDTE; -. DR OrthoDB; EOG61P6PB; -. DR BioCyc; HPY:HP1336-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.287.110; -; 1. DR InterPro; IPR001623; DnaJ_domain. DR Pfam; PF00226; DnaJ; 1. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 194 253 J. {ECO:0000259|PROSITE:PS50076}. SQ SEQUENCE 253 AA; 29729 MW; 61D9BE635919206B CRC64; MAKIELLAKF TQIALPNSHP LLKKVLNYAK KHFSQCHMLS SSLLILNDTE CFKKNYLLNW VYHALECVHE KDISAHSLEE VLQKSHLPIR IKIMAQNTLL EKIEVKVLTF GAEYALFITK HPIAKRFLRQ KFSGCVFLET QDELHIRGDS ERFWELIVTL NENRIVHNAC LDFIYPNGFG KDSYTTMAER KLKECYKTLG FIKHEDFSEV KKRYLELAKT YHPDLCDLKE KKALYAKRFA IIQEAYRHIK KHA // ID O24879_HELPY Unreviewed; 245 AA. AC O24879; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07118.1}; GN OrderedLocusNames=HP_0038 {ECO:0000313|EMBL:AAD07118.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07118.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07118.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07118.1; -; Genomic_DNA. DR PIR; F64524; F64524. DR RefSeq; NP_206840.1; NC_000915.1. DR RefSeq; WP_000660509.1; NC_018939.1. DR ProteinModelPortal; O24879; -. DR DIP; DIP-3076N; -. DR IntAct; O24879; 1. DR MINT; MINT-183957; -. DR STRING; 85962.HP0038; -. DR PaxDb; O24879; -. DR EnsemblBacteria; AAD07118; AAD07118; HP_0038. DR GeneID; 899146; -. DR KEGG; heo:C694_00180; -. DR KEGG; hpy:HP0038; -. DR PATRIC; 20591275; VBIHelPyl33062_0039. DR eggNOG; COG3736; LUCA. DR KO; K12050; -. DR OMA; SIYVQSH; -. DR OrthoDB; EOG6WDSFJ; -. DR BioCyc; HPY:HP0038-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032710; NTF2-like_dom. DR InterPro; IPR007430; VirB8. DR Pfam; PF04335; VirB8; 1. DR SUPFAM; SSF54427; SSF54427; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 75 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 39 239 VirB8. {ECO:0000259|Pfam:PF04335}. SQ SEQUENCE 245 AA; 28568 MW; 1AE8F8D81B63DF34 CRC64; MKEKPFNSEQ LIYLEELLNH QEKHLENKLS GFSVNDLDMQ SVFRLERNRL KIAYKLLGLM SFIALVLAIV LISVLPLQKT EHHFVDFLNQ DKHYAIIQRA DKSISSNEAL ARSLIGAYVL NRESINRIDD KSRYELVRLQ SSSKVWQRFE DLIKTQNSIY VQSHLEREVH IVNIAIYQQD NNPIASVSIA AKLLNENKLV YEKRYKIVLS YLFDTPDFDY ASMPKNPTGF KITRYSITEI TNRGD // ID O25588_HELPY Unreviewed; 251 AA. AC O25588; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE RecName: Full=7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; DE Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917}; DE EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917}; DE AltName: Full=Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; GN Name=queE {ECO:0000256|HAMAP-Rule:MF_00917}; GN OrderedLocusNames=HP_0934 {ECO:0000313|EMBL:AAD07976.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07976.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07976.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Catalyzes the complex heterocyclic radical-mediated CC conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- CC carboxy-7-deazaguanine (CDG), a step common to the biosynthetic CC pathways of all 7-deazapurine-containing compounds. CC {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- CATALYTIC ACTIVITY: 6-carboxy-5,6,7,8-tetrahydropterin = 7- CC carboxy-7-carbaguanine + NH(3). {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- COFACTOR: CC Name=S-adenosyl-L-methionine; Xref=ChEBI:CHEBI:59789; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC Note=Binds 1 S-adenosyl-L-methionine per subunit. CC {ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- PATHWAY: Purine metabolism; 7-cyano-7-deazaguanine biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. 7-carboxy-7- CC deazaguanine synthase family. {ECO:0000256|HAMAP-Rule:MF_00917}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07976.1; -; Genomic_DNA. DR PIR; F64636; F64636. DR RefSeq; NP_207726.1; NC_000915.1. DR RefSeq; WP_000775643.1; NC_018939.1. DR ProteinModelPortal; O25588; -. DR DIP; DIP-3698N; -. DR IntAct; O25588; 1. DR MINT; MINT-176410; -. DR STRING; 85962.HP0934; -. DR PaxDb; O25588; -. DR EnsemblBacteria; AAD07976; AAD07976; HP_0934. DR GeneID; 899463; -. DR KEGG; heo:C694_04805; -. DR KEGG; hpy:HP0934; -. DR PATRIC; 20593169; VBIHelPyl33062_0970. DR eggNOG; ENOG4107XWN; Bacteria. DR eggNOG; COG0602; LUCA. DR KO; K04071; -. DR OMA; CKGFNCK; -. DR OrthoDB; EOG6RJV40; -. DR UniPathway; UPA00391; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016840; F:carbon-nitrogen lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:1904047; F:S-adenosyl-L-methionine binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00917; QueE; 1. DR InterPro; IPR024924; 7-CO-7-deazaguanine_synth-like. DR InterPro; IPR013785; Aldolase_TIM. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00917}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00917}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00917}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00917}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00917}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00917}; KW Queuosine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00917}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00917}. FT REGION 12 14 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT REGION 145 147 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 31 31 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 35 35 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 52 52 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 54 54 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 27 27 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 94 94 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 96 96 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000256|HAMAP- FT Rule:MF_00917}. SQ SEQUENCE 251 AA; 28753 MW; 0E8A4A97747461A8 CRC64; MKLPVVESFF SLQGEGKRIG KPSLFLRLGG CNLSCKGFNC KTLLNDEILT GCDSLYAVHP KFKTSWDYYN EPKPLIERLE DLAPNYKDFD FILTGGEPSL YFNNPILISV LEHFYRQKIP LCVESNGSIF FEFSPILKEL HFTLSVKLSF SLEEESKRIH LKALQNILNN AKSAHFKFVL ESQNAAQSII EIQSLLKQLS LKNNEIFLMP LGTNNNELDK NLKTLAPLAI KHGFRLSDRL HIRLWDNQKG F // ID O25876_HELPY Unreviewed; 161 AA. AC O25876; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08365.1}; GN OrderedLocusNames=HP_1289 {ECO:0000313|EMBL:AAD08365.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08365.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08365.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08365.1; -; Genomic_DNA. DR PIR; A64681; A64681. DR RefSeq; NP_208081.1; NC_000915.1. DR RefSeq; WP_001101319.1; NC_018939.1. DR ProteinModelPortal; O25876; -. DR STRING; 85962.HP1289; -. DR PaxDb; O25876; -. DR EnsemblBacteria; AAD08365; AAD08365; HP_1289. DR GeneID; 900209; -. DR KEGG; heo:C694_06660; -. DR KEGG; hpy:HP1289; -. DR PATRIC; 20593959; VBIHelPyl33062_1350. DR OMA; CSRLCAK; -. DR OrthoDB; EOG6J48N6; -. DR BioCyc; HPY:HP1289-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 66 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 109 129 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 135 157 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 161 AA; 18472 MW; CBCA88F19F12D0A0 CRC64; MNVKNRLSDW EYQWAVALVY TICISINARI FYDIDGSASD SIFDPKNSYY MWLVGLIAAL LSNLLFDPRG RDCYKSFQVR YPRFLKAIFK ARFFGAFYNA VLGSRLRDFY VMLLTIPFIA AIHEVSAYYG HPSNFLIEGL VILGLVCVFG ICSRLCAKLG W // ID O25233_HELPY Unreviewed; 378 AA. AC O25233; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Putative potassium channel protein, putative {ECO:0000313|EMBL:AAD07558.1}; GN OrderedLocusNames=HP_0490 {ECO:0000313|EMBL:AAD07558.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07558.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07558.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07558.1; -; Genomic_DNA. DR PIR; B64581; B64581. DR RefSeq; NP_207287.1; NC_000915.1. DR RefSeq; WP_000461981.1; NC_018939.1. DR ProteinModelPortal; O25233; -. DR DIP; DIP-3608N; -. DR IntAct; O25233; 1. DR MINT; MINT-161950; -. DR STRING; 85962.HP0490; -. DR PaxDb; O25233; -. DR EnsemblBacteria; AAD07558; AAD07558; HP_0490. DR GeneID; 900057; -. DR KEGG; heo:C694_02520; -. DR KEGG; hpy:HP0490; -. DR PATRIC; 20592255; VBIHelPyl33062_0516. DR eggNOG; ENOG4107TME; Bacteria. DR eggNOG; COG1226; LUCA. DR KO; K10716; -. DR OMA; GIHIAKG; -. DR OrthoDB; EOG654P17; -. DR BioCyc; HPY:HP0490-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR GO; GO:0006813; P:potassium ion transport; IEA:InterPro. DR Gene3D; 3.30.70.1450; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006037; RCK_C. DR InterPro; IPR003148; RCK_N. DR Pfam; PF02080; TrkA_C; 1. DR Pfam; PF02254; TrkA_N; 1. DR SUPFAM; SSF116726; SSF116726; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS51202; RCK_C; 1. DR PROSITE; PS51201; RCK_N; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Ion channel {ECO:0000313|EMBL:AAD07558.1}; KW Ion transport {ECO:0000313|EMBL:AAD07558.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000313|EMBL:AAD07558.1}. FT TRANSMEM 32 54 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 113 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 137 265 RCK N-terminal. FT {ECO:0000259|PROSITE:PS51201}. FT DOMAIN 281 366 RCK C-terminal. FT {ECO:0000259|PROSITE:PS51202}. SQ SEQUENCE 378 AA; 42905 MW; 073E6192EA816C58 CRC64; MFEKLKFFKI KKDDEIQPEV NLNSEIYEQF KVFRLPLILI QLLVLLGTLG YFALENYSLM QAFFQTTYTM TATGFGALNE SQFGPISIFL TSILMFFGAG IIAFSVAILV SVVNKGTLTR LIKEKGMIYK IARLKDHYVI CYHNEYTIEL SKQFRSAQIP FVVVDNDPSF EEEAIKHKYP YYIIGDPHTN LAMLKTHLSS ARGVVALSKI LPVNVALMVS VRLFEKELKR KPYYIIASAH SDEGLEKLKK LGADMVVSPT KLMAQRVSAM AVRPDMENIL ERFINKKDTL LDLEEVIVPK TSWLVLRKLK EAHFREIAKA FVIGITQKDG KYIPMPDGET IIASESKLLM VGTSEGVATC KQLISNHQRP KEVDYISL // ID O24942_HELPY Unreviewed; 41 AA. AC O24942; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07201.1}; GN OrderedLocusNames=HP_0128 {ECO:0000313|EMBL:AAD07201.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07201.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07201.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07201.1; -; Genomic_DNA. DR PIR; H64535; H64535. DR RefSeq; NP_206928.1; NC_000915.1. DR RefSeq; WP_010875443.1; NC_018939.1. DR ProteinModelPortal; O24942; -. DR STRING; 85962.HP0128; -. DR PaxDb; O24942; -. DR PRIDE; O24942; -. DR EnsemblBacteria; AAD07201; AAD07201; HP_0128. DR GeneID; 900175; -. DR KEGG; hpy:HP0128; -. DR PATRIC; 20591473; VBIHelPyl33062_0136. DR OrthoDB; EOG6VF39K; -. DR BioCyc; HPY:HP0128-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 41 AA; 4752 MW; EC207E7403E7FDB8 CRC64; MAFYDFLVSK ALKNQYGYLL KIKAQSLQAI ELTNNRTQTN L // ID O25510_HELPY Unreviewed; 587 AA. AC O25510; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Outer membrane protein P1 (OmpP1) {ECO:0000313|EMBL:AAD07886.1}; GN OrderedLocusNames=HP_0839 {ECO:0000313|EMBL:AAD07886.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07886.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07886.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07886.1; -; Genomic_DNA. DR PIR; G64624; G64624. DR RefSeq; NP_207632.1; NC_000915.1. DR RefSeq; WP_000787980.1; NC_018939.1. DR ProteinModelPortal; O25510; -. DR STRING; 85962.HP0839; -. DR PaxDb; O25510; -. DR EnsemblBacteria; AAD07886; AAD07886; HP_0839. DR GeneID; 899368; -. DR KEGG; heo:C694_04300; -. DR KEGG; hpy:HP0839; -. DR PATRIC; 20592971; VBIHelPyl33062_0873. DR eggNOG; ENOG4105CKF; Bacteria. DR eggNOG; COG2067; LUCA. DR OMA; IGIPDSN; -. DR OrthoDB; EOG62C98W; -. DR BioCyc; HPY:HP0839-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005017; OMPP1/FadL/TodX. DR Pfam; PF03349; Toluene_X; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 587 AA; 63654 MW; 2A999204904927C4 CRC64; MKNFSPLCCF KKLKKRHLIA LSLPLLSYAN GFKIQEQSLN GTALGSAYVA GARGADASFY NPANMGFTND WDENRSEFEM TTTVINIPAF KFQVPTTNQG LYSVTSLQID KSQQNILGII NTIGLSNILK ALGNTAATNG LSQAINRVQG LMNLTNQKVV TLASKPDTQI VNGWTGTTNF VLPKFFYKTR THNGFTFGGS FTAPSGLGMK WNGKGGEFLH DVFIMMVELA PSMSYTVNKH FSVGVGLRGL YATGSFNNTV YVPLEGASVL SAEQILNLPN NVFADQVPSN MMTLLGNIGY QPALNCQKAG GDMSDQSCQE FYNGLKKIMG YSGLIKASAN LYGTTQVVQK SNGQGVSGGY RVGSSLRVFD HGMFSVVYNS SVTFNMKGAL VAITELGPSL GSVLTKGSLN INVSLPQTLS LAYAHQFFKD HLRIEGVFER TFWSQGNKFL VTPDFANATY KGLSGTVASL DSETLKKMVG LANFKSVMNM GAGWRDTNTF RLGVTYMGKS LRLMGAIDYD QAPSPQDAIG IPDSNGYTVA FGTKYNFRGF DLGVAGSFTF KSNRSSLYQS PNIGQLRIFS ASLGYRW // ID O25954_HELPY Unreviewed; 96 AA. AC O25954; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Type I restriction enzyme S protein (HsdS) {ECO:0000313|EMBL:AAD08447.1}; GN OrderedLocusNames=HP_1404 {ECO:0000313|EMBL:AAD08447.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08447.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08447.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08447.1; -; Genomic_DNA. DR PIR; D64695; D64695. DR RefSeq; NP_208195.1; NC_000915.1. DR RefSeq; WP_001862650.1; NC_000915.1. DR ProteinModelPortal; O25954; -. DR STRING; 85962.HP1404; -. DR REBASE; 56821; S.Hpy26695ORF7250P. DR PaxDb; O25954; -. DR EnsemblBacteria; AAD08447; AAD08447; HP_1404. DR GeneID; 899892; -. DR KEGG; heo:C694_07255; -. DR KEGG; hpy:HP1404; -. DR eggNOG; COG0732; LUCA. DR KO; K01154; -. DR OMA; YKSQRTI; -. DR OrthoDB; EOG6V7BS3; -. DR BioCyc; HPY:HP1404-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 11 95 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 96 AA; 10472 MW; 7667A4F2462835E4 CRC64; MTERMDALTT PLNWQKVRLG DIAEIIGGGT PSTQITSFWS GSINWFTPTE IGITKYVYKS QRTITPLGLK KSSTKLLPIG TILLTSRASI GDCAIL // ID O25406_HELPY Unreviewed; 342 AA. AC O25406; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07757.1}; GN OrderedLocusNames=HP_0699 {ECO:0000313|EMBL:AAD07757.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07757.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07757.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07757.1; -; Genomic_DNA. DR PIR; C64607; C64607. DR RefSeq; NP_207493.1; NC_000915.1. DR RefSeq; WP_000162004.1; NC_000915.1. DR ProteinModelPortal; O25406; -. DR DIP; DIP-3568N; -. DR IntAct; O25406; 2. DR MINT; MINT-179317; -. DR STRING; 85962.HP0699; -. DR PaxDb; O25406; -. DR EnsemblBacteria; AAD07757; AAD07757; HP_0699. DR GeneID; 899315; -. DR KEGG; heo:C694_03605; -. DR KEGG; hpy:HP0699; -. DR PATRIC; 20592685; VBIHelPyl33062_0731. DR OMA; FIFFTSM; -. DR OrthoDB; EOG6ZPSWT; -. DR BioCyc; HPY:HP0699-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 342 AA; 38723 MW; 89EF5899E198CE2B CRC64; MTKKFMSWMV VIGALICMLL GVFIFFTSMS VKKFLSAYLN AYLDQRPHIK GMGIAGTPFE CEGFFKIACV SKELSFLDSQ NSPIVNFKNL SIKLRSLDKS SLTLSVHSQI KSPILEQDMQ QKISQIPLKD LNALLEKMKP TRLNCSLTFN ALDEKTLNDN LKCDLTNAEN ILAYTFFQEG LMEAQENLSL KNIFKTLSSK DAKAIEELQD KLRFSAPKLG VSIQAHHLKN LLEAFYHQNK ESLGFFSPYF SLRSQTPSVS YESALASLEN YFMALFQSHF KDDTALQQNF KGLLQAFVSM AKDKRSQIAL NAQAKDNAKL TFNALLESLS VNFFQSYKIS HE // ID O25760_HELPY Unreviewed; 212 AA. AC O25760; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Biotin operon repressor/biotin acetyl coenzyme A carboxylase synthetase (BirA) {ECO:0000313|EMBL:AAD08186.1}; GN OrderedLocusNames=HP_1140 {ECO:0000313|EMBL:AAD08186.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08186.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08186.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains BPL/LPL catalytic domain. CC {ECO:0000256|SAAS:SAAS00514708}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08186.1; -; Genomic_DNA. DR PIR; D64662; D64662. DR RefSeq; NP_207931.1; NC_000915.1. DR RefSeq; WP_001248203.1; NC_018939.1. DR ProteinModelPortal; O25760; -. DR IntAct; O25760; 1. DR STRING; 85962.HP1140; -. DR PaxDb; O25760; -. DR EnsemblBacteria; AAD08186; AAD08186; HP_1140. DR GeneID; 899677; -. DR KEGG; heo:C694_05880; -. DR KEGG; hpy:HP1140; -. DR PATRIC; 20593625; VBIHelPyl33062_1192. DR eggNOG; ENOG4108054; Bacteria. DR eggNOG; COG0340; LUCA. DR KO; K03524; -. DR OMA; CEKRVFD; -. DR OrthoDB; EOG6DNTBX; -. DR BioCyc; HPY:HP1140-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004077; F:biotin-[acetyl-CoA-carboxylase] ligase activity; IEA:InterPro. DR GO; GO:0006464; P:cellular protein modification process; IEA:InterPro. DR InterPro; IPR004408; Biotin_CoA_COase_ligase. DR InterPro; IPR004143; BPL_LPL_catalytic. DR PANTHER; PTHR12835; PTHR12835; 1. DR Pfam; PF03099; BPL_LplA_LipB; 1. DR TIGRFAMs; TIGR00121; birA_ligase; 1. DR PROSITE; PS51733; BPL_LPL_CATALYTIC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 181 BPL/LPL catalytic. FT {ECO:0000259|PROSITE:PS51733}. SQ SEQUENCE 212 AA; 23929 MW; D2974D5566D4E384 CRC64; MRQCEKRVFD SLPSTQTYLL EKLKSNELKA PILIVAKNQS AGIGSRGNIW EGAKSALTFS LALNASDLPK DLPMQANALY LGFLFKEVLK ELGSQTWLKW PNDLYLEDQK IGGVLVNVYK DMRVCGIGVN RVSKKWACLD IGASDGLIIE GFLKKIEENL FWGEVLSKYA LEFHRSNSFS FHNDWGEAMS LKDAELLEDG RICIKGKIYD RM // ID O25364_HELPY Unreviewed; 135 AA. AC O25364; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07717.1}; GN OrderedLocusNames=HP_0647 {ECO:0000313|EMBL:AAD07717.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07717.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07717.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07717.1; -; Genomic_DNA. DR PIR; G64600; G64600. DR RefSeq; NP_207441.1; NC_000915.1. DR RefSeq; WP_000527526.1; NC_018939.1. DR ProteinModelPortal; O25364; -. DR IntAct; O25364; 2. DR STRING; 85962.HP0647; -. DR PaxDb; O25364; -. DR EnsemblBacteria; AAD07717; AAD07717; HP_0647. DR GeneID; 898957; -. DR KEGG; heo:C694_03345; -. DR KEGG; hpy:HP0647; -. DR PATRIC; 20592579; VBIHelPyl33062_0678. DR OMA; ICPKDKE; -. DR OrthoDB; EOG66B41J; -. DR BioCyc; HPY:HP0647-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 135 AA; 15619 MW; 0C06EC7DC06A19CE CRC64; MGNLTYYAYM YLILFVCLLP VLLMGLVWRL TRPPLKQNIP NKSLSLENLN EQIKNLKSVP ALEKLKNDFN ERFKICPKDK ETLWLETIQK LVASEFFELE DAINFGQELE NANPNYQQKI ANATGLALKN KKEKG // ID O25725_HELPY Unreviewed; 28 AA. AC O25725; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08149.1}; GN OrderedLocusNames=HP_1093 {ECO:0000313|EMBL:AAD08149.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08149.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08149.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08149.1; -; Genomic_DNA. DR PIR; E64656; E64656. DR IntAct; O25725; 1. DR PaxDb; O25725; -. DR PRIDE; O25725; -. DR EnsemblBacteria; AAD08149; AAD08149; HP_1093. DR BioCyc; HPY:HP1093-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 28 AA; 3091 MW; DDE762A2EF988A66 CRC64; MEHSLIITET ASTIASQTLM GISYHKRA // ID O24917_HELPY Unreviewed; 277 AA. AC O24917; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Type II restriction enzyme R protein (HsdR) {ECO:0000313|EMBL:AAD07162.1}; GN OrderedLocusNames=HP_0091 {ECO:0000313|EMBL:AAD07162.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07162.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07162.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07162.1; -; Genomic_DNA. DR PIR; C64531; C64531. DR RefSeq; NP_206891.1; NC_000915.1. DR RefSeq; WP_000788527.1; NC_018939.1. DR ProteinModelPortal; O24917; -. DR IntAct; O24917; 1. DR STRING; 85962.HP0091; -. DR REBASE; 56862; Hpy26695ORF450P. DR PaxDb; O24917; -. DR EnsemblBacteria; AAD07162; AAD07162; HP_0091. DR GeneID; 900289; -. DR KEGG; heo:C694_00445; -. DR KEGG; hpy:HP0091; -. DR PATRIC; 20591393; VBIHelPyl33062_0096. DR eggNOG; ENOG41076U0; Bacteria. DR eggNOG; ENOG410YTH4; LUCA. DR KO; K01155; -. DR OMA; RKNRGGH; -. DR OrthoDB; EOG60KN76; -. DR BioCyc; HPY:HP0091-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009036; F:Type II site-specific deoxyribonuclease activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR021191; Restrct_endonuc_II_DpmII. DR InterPro; IPR007637; Restrct_endonuc_II_DpmII-like. DR Pfam; PF04556; DpnII; 1. DR PIRSF; PIRSF016080; Restrict_endonuc_II_DpmII; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 7 271 DpnII. {ECO:0000259|Pfam:PF04556}. SQ SEQUENCE 277 AA; 32398 MW; 5D9AF14BF9DAA4E4 CRC64; MKNHLPFDIF LKSLKTSNRT LDFFTDWQKC LKNKNKISIA LNHLNFLLGK DTKELKNCIK SLFKEYPKAF NVLNILIAVR DKKDIVLDAN GNFYPLYSYF EDGEKVYEFI RQTGLERIFC NRNIKDLNDF VFGIEVGLDS NARKNRSGKV MENHLSGLFT NAQLNFKEQV EIREFEDLCQ AFGDDIKKFD FVVCGKDKTY FIEANFYTIS GSKLNEVARS YQDLALKFEA FPNYEFIWIT DGIGWLDAKN KLQEAYKSVE IYNLSNVNDF ISKAQKW // ID O25367_HELPY Unreviewed; 207 AA. AC O25367; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 97. DE SubName: Full=Phosphoserine phosphatase (SerB) {ECO:0000313|EMBL:AAD07711.1}; GN OrderedLocusNames=HP_0652 {ECO:0000313|EMBL:AAD07711.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07711.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07711.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3M1Y} RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 2-207 IN COMPLEX WITH RP MAGNESIUM. RA Syed Ibrahim B., Burley S.K., Swaminathan S.; RT "Crystal Structure of a Phosphoserine phosphatase (SerB) from RT Helicobacter pylori."; RL Submitted (MAR-2010) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07711.1; -; Genomic_DNA. DR PIR; D64601; D64601. DR RefSeq; NP_207446.1; NC_000915.1. DR RefSeq; WP_001170452.1; NC_018939.1. DR PDB; 3M1Y; X-ray; 2.40 A; A/B/C/D=2-207. DR PDBsum; 3M1Y; -. DR ProteinModelPortal; O25367; -. DR STRING; 85962.HP0652; -. DR PaxDb; O25367; -. DR DNASU; 898951; -. DR EnsemblBacteria; AAD07711; AAD07711; HP_0652. DR GeneID; 898951; -. DR KEGG; heo:C694_03370; -. DR KEGG; hpy:HP0652; -. DR PATRIC; 20592589; VBIHelPyl33062_0683. DR eggNOG; ENOG4105EAC; Bacteria. DR eggNOG; COG0560; LUCA. DR KO; K01079; -. DR OMA; CINEPDL; -. DR OrthoDB; EOG6ZPT4H; -. DR BioCyc; HPY:HP0652-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004647; F:phosphoserine phosphatase activity; IEA:InterPro. DR GO; GO:0006564; P:L-serine biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.150.210; -; 1. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006383; HAD-SF_hydro_IB_PSP-like. DR InterPro; IPR023190; Pser_Pase_dom_2. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01488; HAD-SF-IB; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3M1Y}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Magnesium {ECO:0000213|PDB:3M1Y}; KW Metal-binding {ECO:0000213|PDB:3M1Y}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT METAL 8 8 Magnesium. {ECO:0000213|PDB:3M1Y}. FT METAL 10 10 Magnesium; via carbonyl oxygen. FT {ECO:0000213|PDB:3M1Y}. FT METAL 164 164 Magnesium. {ECO:0000213|PDB:3M1Y}. SQ SEQUENCE 207 AA; 22991 MW; 024B0923939FD717 CRC64; MQKLAVFDFD STLVNAETIE SLARAWGVFD EVKTITLKAM NGETDFHKSL ILRVSKLKNM PLKLAKEVCE SLPLFEGALE LVSALKEKNY KVVCFSGGFD LATNHYRDLL HLDAAFSNTL IVENDALNGL VTGHMMFSHS KGEMLLVLQR LLNISKTNTL VVGDGANDLS MFKHAHIKIA FNAKEVLKQH ATHCINEPDL ALIKPLI // ID O25994_HELPY Unreviewed; 130 AA. AC O25994; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08498.1}; GN OrderedLocusNames=HP_1455 {ECO:0000313|EMBL:AAD08498.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08498.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08498.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08498.1; -; Genomic_DNA. DR PIR; G64701; G64701. DR RefSeq; NP_208246.1; NC_000915.1. DR RefSeq; WP_000264829.1; NC_000915.1. DR ProteinModelPortal; O25994; -. DR STRING; 85962.HP1455; -. DR PaxDb; O25994; -. DR PRIDE; O25994; -. DR EnsemblBacteria; AAD08498; AAD08498; HP_1455. DR GeneID; 899838; -. DR KEGG; hpy:HP1455; -. DR PATRIC; 20594319; VBIHelPyl33062_1528. DR OMA; LRITKKH; -. DR OrthoDB; EOG618QW6; -. DR BioCyc; HPY:HP1455-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 130 AA; 14739 MW; 6C298C77976EF5C0 CRC64; MWIKCAKSWA WLKSRVLMKR LAIALVLVLG VAWGKSLPKW AKDCSKGVQI EKTQTKDEKF LVCGMSDILL SDMDYSLSSA RQNALEKVME AFKGDKIEIK ASELKATFID TDKVYVLLKI TKKHVALMNE // ID O25210_HELPY Unreviewed; 487 AA. AC O25210; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE SubName: Full=Type I restriction enzyme M protein (HsdM) {ECO:0000313|EMBL:AAD07525.1}; GN OrderedLocusNames=HP_0463 {ECO:0000313|EMBL:AAD07525.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07525.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07525.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07525.1; -; Genomic_DNA. DR PIR; G64577; G64577. DR RefSeq; NP_207261.1; NC_000915.1. DR RefSeq; WP_001862472.1; NC_018939.1. DR ProteinModelPortal; O25210; -. DR STRING; 85962.HP0463; -. DR REBASE; 56854; M.Hpy26695ORF2375P. DR PaxDb; O25210; -. DR DNASU; 900225; -. DR EnsemblBacteria; AAD07525; AAD07525; HP_0463. DR GeneID; 900225; -. DR KEGG; heo:C694_02375; -. DR KEGG; hpy:HP0463; -. DR PATRIC; 20592197; VBIHelPyl33062_0487. DR eggNOG; ENOG4105CVR; Bacteria. DR eggNOG; COG0286; LUCA. DR KO; K03427; -. DR OMA; FFAPIFE; -. DR OrthoDB; EOG66TG4Z; -. DR BioCyc; HPY:HP0463-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 184 483 N6_Mtase. {ECO:0000259|Pfam:PF02384}. SQ SEQUENCE 487 AA; 55801 MW; 955DFF0EED48867D CRC64; MPNNALLQIK QDTLSLIDDL KVICTSFGLG NDGNEYKIIT QCFLYKFLCD KFEFLFEQEF PNQTIQDYKD FNKEEKEEFF ITLTDKRLPK LAYDDLLNYL FEKHFNDNDL HLKLDIIFNR ISSNNAELFN TTSTDKTTIA LFESISQYIN EESKRANFTR VLLDKLKKFN FKQAFLNLQN QQGYDFFAPI FEYLLKDYNN AGGGKYAEYY TPLSIASIIA KLLINEPTRN VKIYDPSAGT GTLLMALAHQ IGTDSCTLYA QDISQKSLRM LKLNLILNDL THSLRNAIEG NTLTNPYHSK DFKGKMDYIV SNPPFKLDFS NEHAEISQNK NDFFLGVPNI PKNNKSKMPI YTLFFQHCLN MLSNKGKGAI IVPTGFISAK SGVENKIIRH LVDERLVYGV VCMPSQVFAN TGTNVSIIFF QKTPSAKEVV LIDASKLGEE YTENKNKKTR LRPSDIDLIL ETFQNKTKKS DFCALVSFDE ITEKIIL // ID O25178_HELPY Unreviewed; 185 AA. AC O25178; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Phage/colicin/tellurite resistance cluster terY protein {ECO:0000313|EMBL:AAD07497.1}; GN OrderedLocusNames=HP_0428 {ECO:0000313|EMBL:AAD07497.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07497.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07497.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07497.1; -; Genomic_DNA. DR PIR; D64573; D64573. DR RefSeq; NP_207226.1; NC_000915.1. DR RefSeq; WP_010875478.1; NC_000915.1. DR ProteinModelPortal; O25178; -. DR IntAct; O25178; 4. DR MINT; MINT-174065; -. DR STRING; 85962.HP0428; -. DR PaxDb; O25178; -. DR PRIDE; O25178; -. DR EnsemblBacteria; AAD07497; AAD07497; HP_0428. DR GeneID; 899239; -. DR KEGG; hpy:HP0428; -. DR PATRIC; 20592117; VBIHelPyl33062_0447. DR eggNOG; ENOG4108M24; Bacteria. DR eggNOG; COG4245; LUCA. DR OMA; CWSIFIG; -. DR OrthoDB; EOG6ZD6BG; -. DR BioCyc; HPY:HP0428-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011392; Tellurite-R_TerY. DR InterPro; IPR002035; VWF_A. DR PIRSF; PIRSF020634; TerY_vWA; 1. DR SUPFAM; SSF53300; SSF53300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 185 AA; 21136 MW; 691CB2F3D9478B8B CRC64; MRLWVIRTRI EVLNLCIQKM IETLKQEAKK ELFSKMAIVT FGGNGAVLHT DFGDIKNINF KPLSTSGGTP LDQAFRLAKD LIEDKDTFPT KFYKPYSILV SDGEPNNDKW QEPLFNFHHD GRSAKSVCWS IFIGDRNDNP QVNKDFGKDG VFYTDDVEKL VKLFEIMTQT ISKGSASIKK LNWIP // ID O25733_HELPY Unreviewed; 431 AA. AC O25733; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=LPS biosynthesis protein {ECO:0000313|EMBL:AAD08151.1}; GN OrderedLocusNames=HP_1105 {ECO:0000313|EMBL:AAD08151.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08151.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08151.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08151.1; -; Genomic_DNA. DR PIR; A64658; A64658. DR RefSeq; NP_207896.1; NC_000915.1. DR RefSeq; WP_000199741.1; NC_018939.1. DR ProteinModelPortal; O25733; -. DR DIP; DIP-3626N; -. DR IntAct; O25733; 1. DR MINT; MINT-177083; -. DR STRING; 85962.HP1105; -. DR CAZy; GT8; Glycosyltransferase Family 8. DR PaxDb; O25733; -. DR EnsemblBacteria; AAD08151; AAD08151; HP_1105. DR GeneID; 899641; -. DR KEGG; heo:C694_05700; -. DR KEGG; hpy:HP1105; -. DR PATRIC; 20593549; VBIHelPyl33062_1154. DR eggNOG; ENOG41082CB; Bacteria. DR eggNOG; COG1442; LUCA. DR OMA; NYKKTIL; -. DR OrthoDB; EOG6TJ7V7; -. DR BioCyc; HPY:HP1105-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR002495; Glyco_trans_8. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01501; Glyco_transf_8; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 431 AA; 51016 MW; A43EDA7AADC9B89A CRC64; MTSASSHSFK EQDFHIPIAF AFDKNYLIPA GACLYSLLES IAKANKKIRY TLHALVVGLN EEDKAKLNQI TEPFKEFAAL EVRDIESFLD TIPNPFDEDF TKRFSKMVLV KYFLADLFPK YSKMVWSDVD VIFCNEFSAD FLNLEENDEN YFYGVLEVEK HHMMEGFLFC NLDYQRKKNF TLRMHELLRG NEAKGELDFT KWCWPNMKAL GIEYCVFPYY YTIKDFSNAY LNENYKKTIL EARENPTIIH YDAWWGAVKP WDYPFGLKAD LWLNALAKTP FMSDWIDSIA RVEIGSEKWH RYHSIVAYHY YFPLWKTEEQ IAHDALKTFL DHYFSCIHAA IKQENLGMFL NHYFSHAHAE IKENSLEMFL NHYFSHVYRL PKKARKRLFR VFVKHCILIP LKSLVGKTLR LLKLHALAKK ILIQLKLLKK S // ID O24858_HELPY Unreviewed; 350 AA. AC O24858; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07083.1}; GN OrderedLocusNames=HP_0013 {ECO:0000313|EMBL:AAD07083.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07083.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07083.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07083.1; -; Genomic_DNA. DR PIR; E64521; E64521. DR RefSeq; NP_206815.1; NC_000915.1. DR RefSeq; WP_000721203.1; NC_018939.1. DR ProteinModelPortal; O24858; -. DR DIP; DIP-3708N; -. DR IntAct; O24858; 1. DR MINT; MINT-187797; -. DR STRING; 85962.HP0013; -. DR PaxDb; O24858; -. DR EnsemblBacteria; AAD07083; AAD07083; HP_0013. DR GeneID; 899092; -. DR KEGG; heo:C694_00060; -. DR KEGG; hpy:HP0013; -. DR PATRIC; 20591219; VBIHelPyl33062_0011. DR eggNOG; ENOG4105CR1; Bacteria. DR eggNOG; COG0482; LUCA. DR KO; K00566; -. DR OMA; HANMFRN; -. DR OrthoDB; EOG6B8XF8; -. DR BioCyc; HPY:HP0013-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:InterPro. DR GO; GO:0008033; P:tRNA processing; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 2. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR004506; tRNA-specific_2-thiouridylase. DR PANTHER; PTHR11933; PTHR11933; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 350 AA; 40114 MW; 9133CB0C64588EDD CRC64; MKKIKALALF SGGLDSLLSM KLLIDQGIEV TALHFNIGFG GNKDKREYFE NATAQIGAKL LVCDIREQFF NDVLFKPKYG YGKYFNPCID CHANMFRNAF YKMLELNADF VLSGEVLGQR PKSQRKEALN QVRKLVREVG EEARFDPVLD RTQAGGKKPQ FLDELLLRPM SAKLLEPTFM EKKGFVDREK LLDVSGRGRS RQLQMIKDYG LKYYEKPGGG CLLTDIQVSN KIKNLKEYRE MVFEDSVIVK NGRYFVLPHN ARLVVARNEE ENHKLDIQHP LMDKIELLNC KGPLSLVDKN ASKEDKELAG RIALGYAKTL KNQAYLIQIG DEKRELYPLD KENAREYLFA // ID O25535_HELPY Unreviewed; 218 AA. AC O25535; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07918.1}; GN OrderedLocusNames=HP_0864 {ECO:0000313|EMBL:AAD07918.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07918.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07918.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07918.1; -; Genomic_DNA. DR PIR; H64627; H64627. DR RefSeq; NP_207658.1; NC_000915.1. DR RefSeq; WP_000023053.1; NC_018939.1. DR ProteinModelPortal; O25535; -. DR DIP; DIP-3486N; -. DR IntAct; O25535; 1. DR MINT; MINT-179209; -. DR STRING; 85962.HP0864; -. DR PaxDb; O25535; -. DR EnsemblBacteria; AAD07918; AAD07918; HP_0864. DR GeneID; 899393; -. DR KEGG; heo:C694_04425; -. DR KEGG; hpy:HP0864; -. DR PATRIC; 20593017; VBIHelPyl33062_0896. DR eggNOG; ENOG4105Y7S; Bacteria. DR eggNOG; ENOG411262N; LUCA. DR OMA; ERITQIY; -. DR OrthoDB; EOG6KT2S2; -. DR BioCyc; HPY:HP0864-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 34 50 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 218 AA; 25402 MW; D32FB61015093F02 CRC64; MSIKENLEQV RNEFKSDEKL LEGAFRLEKF FKRYKWVLLF IVVAFIAYLG DTKLQDYKHE QTRERITQIY NEVLESPNNI ALQKRLKEVA PELYDLYQFA RASERNDANE FKRLSQSSNE VVKAFAKYSY ASLSRDKNLL EKSPILKEMS ALQEVNLLYE ENSKDAIKKA HQSLSTIPLS SSLYAIISVL KHYGMLEDIQ QNPSKPTNLK KETIQGTH // ID O25440_HELPY Unreviewed; 161 AA. AC O25440; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07787.1}; GN OrderedLocusNames=HP_0741 {ECO:0000313|EMBL:AAD07787.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07787.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07787.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07787.1; -; Genomic_DNA. DR PIR; E64612; E64612. DR RefSeq; NP_207535.1; NC_000915.1. DR RefSeq; WP_001164436.1; NC_018939.1. DR ProteinModelPortal; O25440; -. DR DIP; DIP-3767N; -. DR IntAct; O25440; 1. DR MINT; MINT-184008; -. DR STRING; 85962.HP0741; -. DR PaxDb; O25440; -. DR EnsemblBacteria; AAD07787; AAD07787; HP_0741. DR GeneID; 899010; -. DR KEGG; heo:C694_03805; -. DR KEGG; hpy:HP0741; -. DR PATRIC; 20592769; VBIHelPyl33062_0773. DR eggNOG; ENOG4108R7S; Bacteria. DR eggNOG; COG0537; LUCA. DR OMA; HAHQASV; -. DR OrthoDB; EOG6HB9RS; -. DR BioCyc; HPY:HP0741-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.30.428.10; -; 1. DR InterPro; IPR001310; Histidine_triad_HIT. DR InterPro; IPR011146; HIT-like. DR PANTHER; PTHR23089; PTHR23089; 1. DR Pfam; PF01230; HIT; 1. DR SUPFAM; SSF54197; SSF54197; 1. DR PROSITE; PS51084; HIT_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 21 131 HIT. {ECO:0000259|PROSITE:PS51084}. SQ SEQUENCE 161 AA; 18202 MW; 9FE1F18BD43D78B9 CRC64; MQHLYAPWRE SYLKGKNKSC VFCEISQNPA KDSENRVLYR NSDLFVVMNA YPYNPGHLLI IPHVHQASVE LLDLNTWLNM NALAPKVLKA LYAYGAQGIN LGLNLHRNAG AGIPEHLHMH LVPRFLGDSN FMSVIAQTRV CGMDLNETYL TLKNLLEKEL G // ID O25449_HELPY Unreviewed; 79 AA. AC O25449; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07810.1}; GN OrderedLocusNames=HP_0754 {ECO:0000313|EMBL:AAD07810.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07810.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07810.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07810.1; -; Genomic_DNA. DR PIR; B64614; B64614. DR RefSeq; NP_207547.1; NC_000915.1. DR RefSeq; WP_001087914.1; NC_018939.1. DR ProteinModelPortal; O25449; -. DR IntAct; O25449; 6. DR STRING; 85962.HP0754; -. DR PaxDb; O25449; -. DR EnsemblBacteria; AAD07810; AAD07810; HP_0754. DR GeneID; 899015; -. DR KEGG; heo:C694_03880; -. DR KEGG; hpy:HP0754; -. DR PATRIC; 20592797; VBIHelPyl33062_0787. DR OMA; LQMHKAK; -. DR OrthoDB; EOG6XWV7Q; -. DR BioCyc; HPY:HP0754-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 43 74 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 79 AA; 9113 MW; DF076819852219BD CRC64; MNSPNILLDS FKIALVKKDS KQAFSLIERL SLEQIKSLDL DALLSLKEMI AQSIELLEKE KEELQLQMHK AKKIQKFLS // ID O24969_HELPY Unreviewed; 36 AA. AC O24969; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07244.1}; GN OrderedLocusNames=HP_0161 {ECO:0000313|EMBL:AAD07244.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07244.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07244.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07244.1; -; Genomic_DNA. DR PIR; A64540; A64540. DR ProteinModelPortal; O24969; -. DR PaxDb; O24969; -. DR EnsemblBacteria; AAD07244; AAD07244; HP_0161. DR BioCyc; HPY:HP0161-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 36 AA; 3964 MW; 274E96FCD19329E1 CRC64; MRTKLSPNIS LGSPIALAFG RFTINIKELT TQAIIF // ID O25043_HELPY Unreviewed; 252 AA. AC O25043; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_0263 {ECO:0000313|EMBL:AAD07329.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07329.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07329.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07329.1; -; Genomic_DNA. DR PIR; G64552; G64552. DR RefSeq; NP_207061.1; NC_000915.1. DR RefSeq; WP_000806072.1; NC_018939.1. DR ProteinModelPortal; O25043; -. DR DIP; DIP-3316N; -. DR IntAct; O25043; 11. DR MINT; MINT-166395; -. DR STRING; 85962.HP0263; -. DR REBASE; 56865; M.Hpy26695ORF1330P. DR PaxDb; O25043; -. DR EnsemblBacteria; AAD07329; AAD07329; HP_0263. DR GeneID; 900185; -. DR KEGG; heo:C694_01330; -. DR KEGG; hpy:HP0263; -. DR PATRIC; 20591753; VBIHelPyl33062_0274. DR eggNOG; ENOG4108M6F; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00571; -. DR OMA; TIVWNEQ; -. DR OrthoDB; EOG6MSS08; -. DR BioCyc; HPY:HP0263-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07329.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07329.1}. FT DOMAIN 29 243 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 252 AA; 29274 MW; 6A3857B2ACFEA58C CRC64; MKPYFSLEKL DLYHGDVSVL ETFEKGFYDL CITSLPYNLS IEYQGSDDFR AYDDYLNWCK NWLKNCYFWG KEQARLCLNV PLDTNKHGKQ SLGADIIAIA KECGWKYQNT IIWNESNISR RTAWGSWLQA SAPYAIAPVE LIVVFYKNEY KRQKQTSTIS KEEFLLYTNG LWNFSGESKK RLKHPAPFPR ELPRRCIQLF SFLEDTIFDP FSGSGTTILE ANALGRFSVG LKIEKEYCEL SKKRILESLS LV // ID O25456_HELPY Unreviewed; 200 AA. AC O25456; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07811.1}; GN OrderedLocusNames=HP_0761 {ECO:0000313|EMBL:AAD07811.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07811.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07811.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07811.1; -; Genomic_DNA. DR PIR; A64615; A64615. DR RefSeq; NP_207554.1; NC_000915.1. DR RefSeq; WP_010875542.1; NC_000915.1. DR ProteinModelPortal; O25456; -. DR IntAct; O25456; 2. DR STRING; 85962.HP0761; -. DR PaxDb; O25456; -. DR PRIDE; O25456; -. DR EnsemblBacteria; AAD07811; AAD07811; HP_0761. DR GeneID; 900256; -. DR KEGG; hpy:HP0761; -. DR PATRIC; 20592813; VBIHelPyl33062_0795. DR eggNOG; ENOG41082S0; Bacteria. DR eggNOG; COG0212; LUCA. DR KO; K01934; -. DR OMA; GMDTSFR; -. DR OrthoDB; EOG6XSZT4; -. DR BioCyc; HPY:HP0761-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.10420; -; 1. DR InterPro; IPR002698; FTHF_cligase. DR InterPro; IPR024185; FTHF_cligase-like. DR Pfam; PF01812; 5-FTHF_cyc-lig; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 200 AA; 23648 MW; 37908E2B3F13A5D2 CRC64; MACKLLFWKL KDYQNILLYS PLGHELDIRP LIFRLRQKNK CVWLPKSIKK GAHFSKESFT IAPFRLPLRR LGWFDEPSLS RYYKQELDCI VVPILGMDTS FRRVGFGLGM YDRSLPQLLK RRLKRPLIVF VSRELAIANG VLTNAYDIEA DLYMNARIVV KNNKRKHYEQ RVNLHFIRSL GSVFDYRSSH VLCDEKDLLR // ID O25208_HELPY Unreviewed; 30 AA. AC O25208; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07538.1}; GN OrderedLocusNames=HP_0461 {ECO:0000313|EMBL:AAD07538.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07538.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07538.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07538.1; -; Genomic_DNA. DR PIR; E64577; E64577. DR ProteinModelPortal; O25208; -. DR STRING; 85962.HP0461; -. DR PaxDb; O25208; -. DR PRIDE; O25208; -. DR EnsemblBacteria; AAD07538; AAD07538; HP_0461. DR BioCyc; HPY:HP0461-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 30 AA; 3761 MW; 109D0687B1BC8903 CRC64; MKFYSKNEVL QKRVFKQQLL LTFYKRTHKG // ID O25554_HELPY Unreviewed; 88 AA. AC O25554; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07942.1}; GN OrderedLocusNames=HP_0894 {ECO:0000313|EMBL:AAD07942.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07942.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07942.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:1Z8M} RP STRUCTURE BY NMR. RX PubMed=16231332; DOI=10.1002/prot.20691; RA Han K.D., Park S.J., Jang S.B., Son W.S., Lee B.J.; RT "Solution structure of conserved hypothetical protein HP0894 from RT Helicobacter pylori."; RL Proteins 61:1114-1116(2005). RN [3] {ECO:0000213|PDB:4LS4, ECO:0000213|PDB:4LSY, ECO:0000213|PDB:4LTT} RP X-RAY CRYSTALLOGRAPHY (1.28 ANGSTROMS). RX PubMed=24060809; DOI=10.1016/j.bbapap.2013.09.006; RA Pathak C., Im H., Yang Y.J., Yoon H.J., Kim H.M., Kwon A.R., Lee B.J.; RT "Crystal structure of apo and copper bound HP0894 toxin from RT Helicobacter pylori 26695 and insight into mRNase activity."; RL Biochim. Biophys. Acta 1834:2579-2590(2013). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07942.1; -; Genomic_DNA. DR PIR; F64631; F64631. DR RefSeq; NP_207687.1; NC_000915.1. DR RefSeq; WP_000916169.1; NC_018939.1. DR PDB; 1Z8M; NMR; -; A=1-88. DR PDB; 4LS4; X-ray; 1.66 A; A/B=1-88. DR PDB; 4LSY; X-ray; 1.90 A; A/B=1-88. DR PDB; 4LTT; X-ray; 1.28 A; A=1-88. DR PDBsum; 1Z8M; -. DR PDBsum; 4LS4; -. DR PDBsum; 4LSY; -. DR PDBsum; 4LTT; -. DR ProteinModelPortal; O25554; -. DR SMR; O25554; 1-88. DR DIP; DIP-3577N; -. DR IntAct; O25554; 1. DR MINT; MINT-171720; -. DR STRING; 85962.HP0894; -. DR PaxDb; O25554; -. DR EnsemblBacteria; AAD07942; AAD07942; HP_0894. DR GeneID; 899422; -. DR KEGG; heo:C694_04590; -. DR KEGG; hpy:HP0894; -. DR PATRIC; 20593077; VBIHelPyl33062_0926. DR eggNOG; ENOG4105VXN; Bacteria. DR eggNOG; COG3041; LUCA. DR KO; K19157; -. DR OMA; GVRECHI; -. DR OrthoDB; EOG68Q0X7; -. DR BioCyc; HPY:HP0894-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007712; RelE/ParE_toxin. DR InterPro; IPR004386; Toxin_YafQ-like. DR Pfam; PF15738; YafQ_toxin; 1. DR PIRSF; PIRSF006156; YafQ; 1. DR TIGRFAMs; TIGR02385; RelE_StbE; 1. DR TIGRFAMs; TIGR00053; TIGR00053; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:1Z8M, ECO:0000213|PDB:4LS4, KW ECO:0000213|PDB:4LSY, ECO:0000213|PDB:4LTT}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 88 AA; 10376 MW; 498983E90124F468 CRC64; MLKLNLKKSF QKDFDKLLLN GFDDSVLNEV ILTLRKKEPL DPQFQDHALK GKWKPFRECH IKPDVLLVYL VKDDELILLR LGSHSELF // ID O25741_HELPY Unreviewed; 228 AA. AC O25741; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08165.1}; GN OrderedLocusNames=HP_1115 {ECO:0000313|EMBL:AAD08165.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08165.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08165.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08165.1; -; Genomic_DNA. DR PIR; C64659; C64659. DR RefSeq; NP_207906.1; NC_000915.1. DR RefSeq; WP_010875593.1; NC_018939.1. DR ProteinModelPortal; O25741; -. DR DIP; DIP-3251N; -. DR IntAct; O25741; 2. DR MINT; MINT-181394; -. DR STRING; 85962.HP1115; -. DR PaxDb; O25741; -. DR EnsemblBacteria; AAD08165; AAD08165; HP_1115. DR GeneID; 899651; -. DR KEGG; heo:C694_05750; -. DR KEGG; hpy:HP1115; -. DR PATRIC; 20593571; VBIHelPyl33062_1165. DR OMA; IDFFEFE; -. DR OrthoDB; EOG6CVV9F; -. DR BioCyc; HPY:HP1115-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 115 142 {ECO:0000256|SAM:Coils}. FT COILED 192 223 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 228 AA; 25672 MW; C9331DBBCBEDB9F6 CRC64; MINYPNLPNS ALEITEQPEV KEITNELLKQ LQNALNSNSL FSEQVELSLK GIVRILEVLL SLDFFKNANE IDSSLRNSIE WLNNAGESLK TKMKEYEGFF SDFNTSMRTN EQEVSATLNA NTENIKSEIK KLENQLIETT TRLLTSYQIF LNNARDSANN QITANKTESL EALNQAKTSA NNEITANQTQ ALTNINEAKE NANNQITENK TQAITNINEA KNQSLSKH // ID O25796_HELPY Unreviewed; 459 AA. AC O25796; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08230.1}; GN OrderedLocusNames=HP_1184 {ECO:0000313|EMBL:AAD08230.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08230.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08230.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08230.1; -; Genomic_DNA. DR PIR; H64667; H64667. DR RefSeq; NP_207975.1; NC_000915.1. DR RefSeq; WP_000905722.1; NC_018939.1. DR ProteinModelPortal; O25796; -. DR STRING; 85962.HP1184; -. DR PaxDb; O25796; -. DR DNASU; 899946; -. DR EnsemblBacteria; AAD08230; AAD08230; HP_1184. DR GeneID; 899946; -. DR KEGG; heo:C694_06125; -. DR KEGG; hpy:HP1184; -. DR PATRIC; 20593723; VBIHelPyl33062_1239. DR eggNOG; ENOG4105C3S; Bacteria. DR eggNOG; COG0534; LUCA. DR OMA; NKTHRAR; -. DR OrthoDB; EOG63Z745; -. DR BioCyc; HPY:HP1184-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015297; F:antiporter activity; IEA:InterPro. DR GO; GO:0015238; F:drug transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR002528; MATE_fam. DR Pfam; PF01554; MatE; 2. DR PIRSF; PIRSF006603; DinF; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 16 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 57 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 117 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 158 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 165 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 216 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 248 266 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 272 292 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 313 335 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 363 384 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 391 413 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 419 441 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 459 AA; 51617 MW; 141FCC128B6D7DE4 CRC64; MLIKKIDLHK DPIRKLFFYY FIPLAFSMIS LSTYSMIDGM FVGKKLGKEA IAAVNIAWPI FPGLIAYELL FGFGAASIVG YFLGQNKTHR ARLVFSSVFY FVAISAFILS MALLPFSETI ARFFGSNDAL LSMSKRYIEI ILMGAVFMVL HPLADVFVVN DKRPILAMVA MLIGSLANIF FNYLFIFVLK VGVQGSAIAT VIGHAIGVLV LMQHFWRKKG QLYFIKRFSL SSVISSAKSG VPQSTAEFSA SVMILLFNTA IMHTAGERFV SMYGIVMYNA IIFFTTLFAI SQGIQPIASF SYGARNLERV KEVFVFGLKA AFCIGIVFYG AYYFLDEFLI KLYLQPSEQD PLFMQETKRA MNIYYVGYIF LGMTLLCAVF FQSIQRTKSS FIITLSHTLG FIVILLPILS HFYGINGVWV TYPIAQFLAF LVALGVTYYE IKKGVFTTYK EKNPIALKT // ID O25020_HELPY Unreviewed; 176 AA. AC O25020; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07302.1}; GN OrderedLocusNames=HP_0234 {ECO:0000313|EMBL:AAD07302.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07302.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07302.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07302.1; -; Genomic_DNA. DR PIR; B64549; B64549. DR RefSeq; NP_207032.1; NC_000915.1. DR RefSeq; WP_001275574.1; NC_018939.1. DR ProteinModelPortal; O25020; -. DR STRING; 85962.HP0234; -. DR PaxDb; O25020; -. DR EnsemblBacteria; AAD07302; AAD07302; HP_0234. DR GeneID; 900125; -. DR KEGG; heo:C694_01180; -. DR KEGG; hpy:HP0234; -. DR PATRIC; 20591693; VBIHelPyl33062_0245. DR eggNOG; ENOG41060R5; Bacteria. DR eggNOG; ENOG41125ZS; LUCA. DR OMA; IEPREHR; -. DR OrthoDB; EOG6QZMR9; -. DR BioCyc; HPY:HP0234-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 125 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 157 175 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 176 AA; 20203 MW; 09BFE9B7D9292873 CRC64; MSAMMRYFHI YATTFFFPLA LLFAVSGLSL LFGVRQDTGA TIKEWVLEKS LKKEERLDFL KDFLKENHIA MPKKIEPREH RGALVIGTPL YEINLETKGD QTKIKTIERG FLGALIMLHK AKVGVVFKTL LGIFCVFLLL FYVSAFLMVA FKDTKRMFIS VLIGFVVFFG AIYWSL // ID O25351_HELPY Unreviewed; 178 AA. AC O25351; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Quinone-reactive Ni/Fe hydrogenase (HydD) {ECO:0000313|EMBL:AAD07694.1}; GN OrderedLocusNames=HP_0634 {ECO:0000313|EMBL:AAD07694.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07694.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07694.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07694.1; -; Genomic_DNA. DR PIR; B64599; B64599. DR RefSeq; NP_207428.1; NC_000915.1. DR RefSeq; WP_000078602.1; NC_018939.1. DR ProteinModelPortal; O25351; -. DR IntAct; O25351; 15. DR MINT; MINT-4074267; -. DR STRING; 85962.HP0634; -. DR PaxDb; O25351; -. DR DNASU; 900014; -. DR EnsemblBacteria; AAD07694; AAD07694; HP_0634. DR GeneID; 900014; -. DR KEGG; heo:C694_03280; -. DR KEGG; hpy:HP0634; -. DR PATRIC; 20592551; VBIHelPyl33062_0664. DR eggNOG; ENOG4108USZ; Bacteria. DR eggNOG; COG0680; LUCA. DR KO; K03605; -. DR OMA; LIMMEMV; -. DR OrthoDB; EOG6W9X9G; -. DR BioCyc; HPY:HP0634-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008047; F:enzyme activator activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0008233; F:peptidase activity; IEA:InterPro. DR GO; GO:0016485; P:protein processing; IEA:InterPro. DR Gene3D; 3.40.50.1450; -; 1. DR InterPro; IPR004419; Pept_A31_hyd_express. DR InterPro; IPR023430; Pept_HybD-like_dom. DR InterPro; IPR000671; Peptidase_A31. DR Pfam; PF01750; HycI; 1. DR PRINTS; PR00446; HYDRGNUPTAKE. DR SUPFAM; SSF53163; SSF53163; 1. DR TIGRFAMs; TIGR00140; hupD; 1. DR TIGRFAMs; TIGR00072; hydrog_prot; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 178 AA; 19578 MW; F995F2E29B066BF7 CRC64; MSQKILILGI GNILFGDEGI GVHLAHYLKK NFSFFPSVDI IDGGTMAQQL IPLITSYEKV LILDCVSAEG VEIGSVYAFD FKDAPKEITW AGSAHEVEML HTLRLTEFLG DLPKTFIVGL VPFVIGSETT FKLSSKILNA LETALKAIET QLNAWGVKMQ RTDHIALECI AELSYKGF // ID O26084_HELPY Unreviewed; 271 AA. AC O26084; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE RecName: Full=Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; GN OrderedLocusNames=HP_1564 {ECO:0000313|EMBL:AAD08604.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08604.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08604.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the nlpA lipoprotein family. CC {ECO:0000256|PIRNR:PIRNR002854}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08604.1; -; Genomic_DNA. DR PIR; D64715; D64715. DR RefSeq; NP_208355.1; NC_000915.1. DR RefSeq; WP_001862559.1; NC_018939.1. DR ProteinModelPortal; O26084; -. DR IntAct; O26084; 2. DR STRING; 85962.HP1564; -. DR PaxDb; O26084; -. DR EnsemblBacteria; AAD08604; AAD08604; HP_1564. DR GeneID; 899727; -. DR KEGG; heo:C694_08105; -. DR KEGG; hpy:HP1564; -. DR PATRIC; 20594555; VBIHelPyl33062_1645. DR eggNOG; ENOG4105D01; Bacteria. DR eggNOG; COG1464; LUCA. DR KO; K02073; -. DR OMA; DDECERY; -. DR OrthoDB; EOG6P073X; -. DR BioCyc; HPY:HP1564-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004872; Lipoprotein_NlpA. DR PANTHER; PTHR30429; PTHR30429; 1. DR Pfam; PF03180; Lipoprotein_9; 1. DR PIRSF; PIRSF002854; MetQ; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 271 AA; 30151 MW; 23786AEFB5C6CB5B CRC64; MNAFKRIISV GVIALGLFNL LDAKHHKEKK ENHKITRELK VGANPVPHAQ ILQSVVDDLK EKGIKLVIVS FTDYVLPNLA LNDGSLDANY FQHRPYLDRF NLDRKMHLVG LANIHVEPLR FYSQKITDIK NLKKGSVIAV PNDPANQGRA LILLHKQGLI ALKDPSNLYA TEFDIVKNPY NIKIKPLEAA LLPKVLGDVD GAIITGNYAL QAKLTGALFS EDKDSPYANL IAAREDNAQD EAIKTLIEAL QSEKTRKFIL DTYKGAIIPA F // ID O25589_HELPY Unreviewed; 161 AA. AC O25589; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07982.1}; GN OrderedLocusNames=HP_0935 {ECO:0000313|EMBL:AAD07982.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07982.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07982.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07982.1; -; Genomic_DNA. DR PIR; G64636; G64636. DR RefSeq; NP_207727.1; NC_000915.1. DR RefSeq; WP_000153370.1; NC_018939.1. DR ProteinModelPortal; O25589; -. DR DIP; DIP-3590N; -. DR IntAct; O25589; 3. DR MINT; MINT-168379; -. DR STRING; 85962.HP0935; -. DR PaxDb; O25589; -. DR EnsemblBacteria; AAD07982; AAD07982; HP_0935. DR GeneID; 899464; -. DR KEGG; heo:C694_04810; -. DR KEGG; hpy:HP0935; -. DR PATRIC; 20593171; VBIHelPyl33062_0971. DR eggNOG; COG0454; LUCA. DR OMA; TKISLHV; -. DR OrthoDB; EOG64JFPD; -. DR BioCyc; HPY:HP0935-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR Pfam; PF00583; Acetyltransf_1; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 161 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 161 AA; 18418 MW; 31C668B6C78DCD8C CRC64; MTIKVFSPKY PTELEEFYAE RIADNPLGFI QRLDLLPSIS GFVQKLREHG GEFFEMREGN KLIGICGLNP INQTEAELCK FHINSAYQSQ GLGQKLYESV EKYAFIKGYT KISLHVSKSQ IKACNLYQKL GFVHIKEEDC VVELGEETLI FPTLFMEKIL S // ID O25459_HELPY Unreviewed; 428 AA. AC O25459; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07813.1}; GN OrderedLocusNames=HP_0764 {ECO:0000313|EMBL:AAD07813.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07813.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07813.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07813.1; -; Genomic_DNA. DR PIR; D64615; D64615. DR RefSeq; NP_207557.1; NC_000915.1. DR RefSeq; WP_001130716.1; NC_000915.1. DR ProteinModelPortal; O25459; -. DR DIP; DIP-3507N; -. DR IntAct; O25459; 1. DR MINT; MINT-161659; -. DR STRING; 85962.HP0764; -. DR PaxDb; O25459; -. DR EnsemblBacteria; AAD07813; AAD07813; HP_0764. DR GeneID; 900280; -. DR KEGG; heo:C694_03930; -. DR KEGG; hpy:HP0764; -. DR PATRIC; 20592819; VBIHelPyl33062_0798. DR eggNOG; ENOG4106CBV; Bacteria. DR eggNOG; COG0727; LUCA. DR KO; K06940; -. DR OrthoDB; EOG6MD96R; -. DR BioCyc; HPY:HP0764-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005358; Puta_zinc/iron-chelating_dom. DR Pfam; PF03692; CxxCxxCC; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 269 296 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 428 AA; 47876 MW; 71833B1EB7141647 CRC64; MPLPFIIAAG VALVAAGYGV KKKVDADILS EETNEYIKYI NEGNDLLEEA EEVIKAVASD CEFALARFEE KRCYIRNHVI SEFLHHFNQL EGFELTNKKD SMENIQLDVS NTLKIIDKNL KMSSFDTLGA VGNVVGGFSM GFGLAAGGIV GSVGLLAGPT LAIFGALRAA EMEKKLEDAK AYCSQVEAAV KKADAMIDNL QAVRKMADLF TRQITKFDAL FFSLAQEAIA TMKKHNYDFS HYNQKEQDQL ATASSTLKTL GAFLKVPIMD KHQKLNEATQ SKLEFMQREM SSLEAKHYDS VKIKFGLVRR LFEFFRSLWG KNGRIQRAKT TPDRFPCTSC GLCCKNIAGI IELIGFDAGN GVCKFLDLET NLCKIYESRP LICRIDEAHK KLYPHIPLKE FYAKNAEVCN ALQEANHMDK SFRVILKK // ID O25454_HELPY Unreviewed; 417 AA. AC O25454; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07807.1}; GN OrderedLocusNames=HP_0759 {ECO:0000313|EMBL:AAD07807.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07807.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07807.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07807.1; -; Genomic_DNA. DR PIR; G64614; G64614. DR RefSeq; NP_207552.1; NC_000915.1. DR RefSeq; WP_000961881.1; NC_018939.1. DR ProteinModelPortal; O25454; -. DR DIP; DIP-3081N; -. DR IntAct; O25454; 2. DR MINT; MINT-161247; -. DR STRING; 85962.HP0759; -. DR PaxDb; O25454; -. DR EnsemblBacteria; AAD07807; AAD07807; HP_0759. DR GeneID; 899335; -. DR KEGG; heo:C694_03905; -. DR KEGG; hpy:HP0759; -. DR PATRIC; 20592807; VBIHelPyl33062_0792. DR eggNOG; ENOG4107T1S; Bacteria. DR eggNOG; COG0534; LUCA. DR OMA; NILMNVI; -. DR OrthoDB; EOG6FV84C; -. DR BioCyc; HPY:HP0759-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015297; F:antiporter activity; IEA:InterPro. DR GO; GO:0015238; F:drug transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR002528; MATE_fam. DR Pfam; PF01554; MatE; 2. DR PIRSF; PIRSF006603; DinF; 1. DR TIGRFAMs; TIGR00797; matE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 85 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 105 129 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 136 153 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 165 187 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 216 234 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 254 275 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 287 307 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 327 344 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 356 377 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 383 402 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 417 AA; 46487 MW; FD13C5ADD4A857A8 CRC64; MLVVALSVFF VGKISHHHIV ALGVGLQFLM LFYGINTILY TGTNAILSRL VGARDFTQIN HAFSSIFIGA FMICLGVLFV SYFLIEPFLN WMQLQDPSRQ LTQDYLEVLV VALPSIFLKN ILVSALASFS DTLTPFIVKI IMVIACIFLN QALIFGDFGF KEMGIVGSAL ANVVVSYLEL LALGVWIQIK KIPLKFKITF HFSFLKTMFR VGWPAGFERL LSLFSLILLS KFVASYGDKV LAGMQIGIRV ETFSFMPGFG FMIAAMVLTG QNLGANKPKI ATEYAHLILK ISMGLMGVLG IVLVLFAKEF ASLFSQDEEV LEVARSYLIA VGLSQAPLIG YFVLDGVFRG AGISKVSLYI NTLSLWGLRI MPIYLLLIHH FKVEFIFVVI ASETFLRSFI YYKVFSKGIW KRCGKKA // ID O25110_HELPY Unreviewed; 140 AA. AC O25110; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07414.1}; GN OrderedLocusNames=HP_0343 {ECO:0000313|EMBL:AAD07414.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07414.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07414.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07414.1; -; Genomic_DNA. DR PIR; G64562; G64562. DR RefSeq; WP_010875467.1; NC_018939.1. DR ProteinModelPortal; O25110; -. DR STRING; 85962.HP0343; -. DR PaxDb; O25110; -. DR PRIDE; O25110; -. DR EnsemblBacteria; AAD07414; AAD07414; HP_0343. DR PATRIC; 20591921; VBIHelPyl33062_0357. DR BioCyc; HPY:HP0343-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 50 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 77 99 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 105 123 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 140 AA; 16281 MW; 154BAB154C1894B1 CRC64; MSYFFKIILG TSVIVGVLLG LWRLTYDKFY FSLVFVLLIL GIVACSYISL KMHQRKCFAK CFVNSESFLS KMLHSPIMVI CFYFIFSIFT SISIVYSVLD YDQMMWGFVF CTIVVCAVVF GTLEKNAQEY HQRRLFDADV // ID O25038_HELPY Unreviewed; 219 AA. AC O25038; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD07325.1}; GN OrderedLocusNames=HP_0257 {ECO:0000313|EMBL:AAD07325.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07325.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07325.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07325.1; -; Genomic_DNA. DR PIR; A64552; A64552. DR RefSeq; NP_207055.1; NC_000915.1. DR RefSeq; WP_001226637.1; NC_018939.1. DR ProteinModelPortal; O25038; -. DR IntAct; O25038; 3. DR STRING; 85962.HP0257; -. DR PaxDb; O25038; -. DR EnsemblBacteria; AAD07325; AAD07325; HP_0257. DR GeneID; 900105; -. DR KEGG; heo:C694_01300; -. DR KEGG; hpy:HP0257; -. DR PATRIC; 20591741; VBIHelPyl33062_0268. DR eggNOG; COG3334; LUCA. DR OMA; CSAIFES; -. DR OrthoDB; EOG6SJJK7; -. DR BioCyc; HPY:HP0257-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR006668; Mg_transptr_MgtE_intracell_dom. DR Pfam; PF03448; MgtE_N; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 89 182 MgtE_N. {ECO:0000259|Pfam:PF03448}. FT COILED 27 121 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 219 AA; 24815 MW; F042BB1BC66C8023 CRC64; MRKILLLGLI LQALFSEEAA QELLQCSAIF ESKKAELKDD LRRLSEKEQS LRILQTENAR LLDEKTDLLN QKEKEVEEKL KNLAAKEEAF KTLQTEEKKR LKNLIEENEG ILREIKQAKD SKIGETYSKM KDSKSALILE NLPTQNALEI LMALKPQELG KILAKMDPKK AAALTELWQK PPKENKEIPK TTAPTPPIAP TPLKEPMIKD PNTKEPAGV // ID O25245_HELPY Unreviewed; 49 AA. AC O25245; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07580.1}; GN OrderedLocusNames=HP_0504 {ECO:0000313|EMBL:AAD07580.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07580.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07580.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07580.1; -; Genomic_DNA. DR PIR; H64582; H64582. DR ProteinModelPortal; O25245; -. DR IntAct; O25245; 3. DR STRING; 85962.HP0504; -. DR REBASE; 17368; HpyAORF503P. DR PaxDb; O25245; -. DR EnsemblBacteria; AAD07580; AAD07580; HP_0504. DR KEGG; heo:C694_02590; -. DR PATRIC; 20592283; VBIHelPyl33062_0530. DR OrthoDB; EOG6B0B4M; -. DR BioCyc; HPY:HP0504-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 49 AA; 5328 MW; 444B5C657EB5A390 CRC64; MSLIKVSGDK KAIEVSIPLT SILGKVRVKI RHAFSDYGIS TATRKSLLV // ID O25555_HELPY Unreviewed; 125 AA. AC O25555; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07949.1}; GN OrderedLocusNames=HP_0895 {ECO:0000313|EMBL:AAD07949.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07949.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07949.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07949.1; -; Genomic_DNA. DR PIR; G64631; G64631. DR RefSeq; NP_207688.1; NC_000915.1. DR RefSeq; WP_001134075.1; NC_018939.1. DR ProteinModelPortal; O25555; -. DR DIP; DIP-3336N; -. DR IntAct; O25555; 3. DR MINT; MINT-171714; -. DR STRING; 85962.HP0895; -. DR PaxDb; O25555; -. DR DNASU; 899423; -. DR EnsemblBacteria; AAD07949; AAD07949; HP_0895. DR GeneID; 899423; -. DR KEGG; heo:C694_04595; -. DR KEGG; hpy:HP0895; -. DR PATRIC; 20593079; VBIHelPyl33062_0927. DR OMA; RANDCCL; -. DR OrthoDB; EOG6PP9QD; -. DR BioCyc; HPY:HP0895-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 15 64 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 125 AA; 14714 MW; D92E0FBD5DA16C28 CRC64; MPNTTAKKDY TKYSKKQLFN LIHQLERKIK KMQNDRISFK EKMAKELEKR DQNFKDKIDA LNELLQKISQ AFDDKRDCCL GHEIPNIETQ QAMRDVGNKE TDLIVEDFSS YSNERKRALG VEAQS // ID O24992_HELPY Unreviewed; 118 AA. AC O24992; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07273.1}; GN OrderedLocusNames=HP_0199 {ECO:0000313|EMBL:AAD07273.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07273.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07273.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07273.1; -; Genomic_DNA. DR PIR; G64544; G64544. DR RefSeq; NP_206998.1; NC_000915.1. DR RefSeq; WP_001159178.1; NC_018939.1. DR ProteinModelPortal; O24992; -. DR DIP; DIP-3276N; -. DR IntAct; O24992; 8. DR MINT; MINT-162774; -. DR STRING; 85962.HP0199; -. DR PaxDb; O24992; -. DR EnsemblBacteria; AAD07273; AAD07273; HP_0199. DR GeneID; 899157; -. DR KEGG; heo:C694_00990; -. DR KEGG; hpy:HP0199; -. DR PATRIC; 20591619; VBIHelPyl33062_0209. DR OMA; IKLDYHY; -. DR OrthoDB; EOG66TGC3; -. DR BioCyc; HPY:HP0199-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 118 AA; 13404 MW; 6C7DEB7E3478B887 CRC64; MQFEMRKIAF NAPKAFSLEH EGVVLEGEVV RVGAKLFRLE ACLKGELMLI CDTSGKEFKK SLDESLVLHI SDGLWDTQSQ SLDFDNLDVI ESFNGFIDLS EILRSEVESI KLDYHYAD // ID O25855_HELPY Unreviewed; 328 AA. AC O25855; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08320.1}; GN OrderedLocusNames=HP_1265 {ECO:0000313|EMBL:AAD08320.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08320.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08320.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08320.1; -; Genomic_DNA. DR PIR; A64678; A64678. DR RefSeq; NP_208057.1; NC_000915.1. DR RefSeq; WP_000012749.1; NC_018939.1. DR ProteinModelPortal; O25855; -. DR IntAct; O25855; 1. DR STRING; 85962.HP1265; -. DR PaxDb; O25855; -. DR EnsemblBacteria; AAD08320; AAD08320; HP_1265. DR GeneID; 899076; -. DR KEGG; heo:C694_06540; -. DR KEGG; hpy:HP1265; -. DR PATRIC; 20593907; VBIHelPyl33062_1324. DR eggNOG; ENOG4105ZN1; Bacteria. DR eggNOG; ENOG41126HY; LUCA. DR KO; K00335; -. DR OMA; CVLFGGF; -. DR OrthoDB; EOG6BCSPW; -. DR BioCyc; HPY:HP1265-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 144 171 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 328 AA; 37230 MW; 0E6F5DDE6BC99EAC CRC64; MSGFNPLNSP LVASSSLSLK EAYYLEKLSL KKGFKIHYKM TKDSLNLLEK SDLCVLFGGF SNACLNENER WILESISHSK RPYALLRPLQ DTRDLQENCL FASYEIHTEA AILALILRGI LEQTSQLKGH VLEKIDVGYL SSEANMSEEE LQELIALIVK AKKRALVLNR EITKHANNAF LYTLLSELQN YLEILHIPCY DSSATTAFYD FKDQEWLLET AFKEGILPFK SQLQSKDLEL LERISEANGS FVYVSYKSLE TPKLSFSKQF KIANKIEHSK AGFQISNQTL ECELEENPHL KGLIAILEGA FFDAYPYIPI LSHSQGIS // ID O25839_HELPY Unreviewed; 76 AA. AC O25839; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08286.1}; GN OrderedLocusNames=HP_1242 {ECO:0000313|EMBL:AAD08286.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08286.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08286.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:1ZHC} RP STRUCTURE BY NMR. RX PubMed=16231304; DOI=10.1002/prot.20654; RA Kang S.J., Park S.J., Jung S.J., Lee B.J.; RT "Solution structure of HP1242 from Helicobacter pylori."; RL Proteins 61:1111-1113(2005). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08286.1; -; Genomic_DNA. DR PIR; B64675; B64675. DR RefSeq; NP_208034.1; NC_000915.1. DR RefSeq; WP_000468330.1; NC_018939.1. DR PDB; 1ZHC; NMR; -; A=1-76. DR PDBsum; 1ZHC; -. DR ProteinModelPortal; O25839; -. DR SMR; O25839; 1-76. DR IntAct; O25839; 2. DR STRING; 85962.HP1242; -. DR PaxDb; O25839; -. DR EnsemblBacteria; AAD08286; AAD08286; HP_1242. DR GeneID; 898767; -. DR KEGG; heo:C694_06405; -. DR KEGG; hpy:HP1242; -. DR PATRIC; 20593855; VBIHelPyl33062_1298. DR eggNOG; ENOG4105WGM; Bacteria. DR eggNOG; COG2841; LUCA. DR KO; K09794; -. DR OMA; FERHNEL; -. DR OrthoDB; EOG63VC4F; -. DR BioCyc; HPY:HP1242-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007420; DUF465. DR Pfam; PF04325; DUF465; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:1ZHC}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 76 AA; 9111 MW; C075FF39F99B9E6E CRC64; MFHEFRDEIS VLKANNPHFD KIFEKHNQLD DDIKTAEQQN ASDAEVSHMK KQKLKLKDEI HSMIIEYREK QKSERA // ID O25795_HELPY Unreviewed; 383 AA. AC O25795; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=NA+/H+ antiporter (NapA) {ECO:0000313|EMBL:AAD08229.1}; GN OrderedLocusNames=HP_1183 {ECO:0000313|EMBL:AAD08229.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08229.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08229.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08229.1; -; Genomic_DNA. DR PIR; G64667; G64667. DR RefSeq; NP_207974.1; NC_000915.1. DR RefSeq; WP_000542869.1; NC_018939.1. DR ProteinModelPortal; O25795; -. DR DIP; DIP-3085N; -. DR IntAct; O25795; 1. DR MINT; MINT-180433; -. DR STRING; 85962.HP1183; -. DR PaxDb; O25795; -. DR EnsemblBacteria; AAD08229; AAD08229; HP_1183. DR GeneID; 899945; -. DR KEGG; heo:C694_06120; -. DR KEGG; hpy:HP1183; -. DR PATRIC; 20593721; VBIHelPyl33062_1238. DR eggNOG; ENOG4107VF2; Bacteria. DR eggNOG; COG0475; LUCA. DR OMA; LLWRQYF; -. DR OrthoDB; EOG6XDGX2; -. DR BioCyc; HPY:HP1183-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015299; F:solute:proton antiporter activity; IEA:InterPro. DR InterPro; IPR006153; Cation/H_exchanger. DR Pfam; PF00999; Na_H_Exchanger; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003721}. FT TRANSMEM 6 22 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 46 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 75 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 87 104 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 110 127 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 139 162 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 174 195 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 216 232 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 288 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 294 315 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 327 346 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 358 379 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 10 379 Na_H_Exchanger. FT {ECO:0000259|Pfam:PF00999}. SQ SEQUENCE 383 AA; 43343 MW; 78DF82DD76C6C3AE CRC64; MHAEFFTFAL IMLLIVMAPY MSRISRLPIT VVEILFGSVG AYVGFIEPTK GFEIMSEIGF LFLMFLCGLE VEIYLFKKLG VSLLKRIFAY LLILYTLSFI LTFSLNLEPI FMVIFPIISL GMIMTLVKDY RKEILWLDLV LKVGVIGELL SIFGLVVVDG VYSHGLGMDL IKDLGILIVF LILIIVAFQI FKTLFWWFPH LKLFVMPKSS QFNQDVRFSL MLFFSLVAIV VWLKIEMVLG AFLAGLVVST FFPHKSELIH KLNDVGFGFF VPLFFIHVGS TLDLKLVFLN PHLILQGILI VIAMLSLHLI TSTLLWRKYF KEAKHLFSFA LGASMPLTFL VTTAAVGLKA QAISQNTYYA LLMAAIFEGV LFTIAIKILN KKA // ID O25547_HELPY Unreviewed; 140 AA. AC O25547; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07928.1}; GN OrderedLocusNames=HP_0880 {ECO:0000313|EMBL:AAD07928.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07928.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07928.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07928.1; -; Genomic_DNA. DR PIR; H64629; H64629. DR RefSeq; NP_207674.1; NC_000915.1. DR RefSeq; WP_000857970.1; NC_018939.1. DR ProteinModelPortal; O25547; -. DR IntAct; O25547; 1. DR PaxDb; O25547; -. DR EnsemblBacteria; AAD07928; AAD07928; HP_0880. DR GeneID; 899409; -. DR KEGG; heo:C694_04505; -. DR KEGG; hpy:HP0880; -. DR PATRIC; 20593049; VBIHelPyl33062_0912. DR OrthoDB; EOG62G602; -. DR BioCyc; HPY:HP0880-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 76 117 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 140 AA; 16208 MW; B59FFE038CF86D1F CRC64; MKTSAKVLLT LLIVISLGKG LNSLISAWRG KDDAIPIETR LHKNKLTIIS KTDSIEIQDI QFNRENCSHT YTSKDLEKIQ KDLEELEEGV PELFEELERD EESIAKNKKT IQEYQNKIAN FQKYYKDIKD IDDYSALMAQ // ID O25321_HELPY Unreviewed; 433 AA. AC O25321; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Hemolysin secretion protein (HylB) {ECO:0000313|EMBL:AAD07662.1}; GN OrderedLocusNames=HP_0599 {ECO:0000313|EMBL:AAD07662.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07662.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07662.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07662.1; -; Genomic_DNA. DR PIR; G64594; G64594. DR RefSeq; NP_207394.1; NC_000915.1. DR RefSeq; WP_000467802.1; NC_018939.1. DR ProteinModelPortal; O25321; -. DR DIP; DIP-3485N; -. DR IntAct; O25321; 5. DR MINT; MINT-187505; -. DR STRING; 85962.HP0599; -. DR PaxDb; O25321; -. DR EnsemblBacteria; AAD07662; AAD07662; HP_0599. DR GeneID; 899971; -. DR KEGG; heo:C694_03095; -. DR KEGG; hpy:HP0599; -. DR PATRIC; 20592477; VBIHelPyl33062_0627. DR eggNOG; ENOG4107SDU; Bacteria. DR eggNOG; COG0840; LUCA. DR OMA; GMVFGLN; -. DR OrthoDB; EOG6H4K9N; -. DR BioCyc; HPY:HP0599-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR InterPro; IPR025991; Chemoreceptor_zinc-bind_dom. DR InterPro; IPR004089; MCPsignal_dom. DR Pfam; PF13682; CZB; 1. DR Pfam; PF00015; MCPsignal; 1. DR SMART; SM00283; MA; 1. DR PROSITE; PS50111; CHEMOTAXIS_TRANSDUC_2; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 124 287 Methyl-accepting transducer. FT {ECO:0000259|PROSITE:PS50111}. FT COILED 4 31 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 433 AA; 48361 MW; 3153A9D52D3A746E CRC64; MFGNKQLQLQ ISQKDSEIAE LKKEVNLYQS LLNLCLHEGF VGIKNNKVVF KSGNLASLNN LEEQSVHFKE NAESVNLQGV SYSLKSQNID GVQYFSLAKN TSCVGEYHKN DLFKTFCASL KEGLENAQES MQYFHQETGA LLNAAKNGEA HSTEGLGTVN KTGQDIESLY EKMQNATSLA DSLNQRSNEI TQVISLIDDI AEQTNLLALN AAIEAARAGE HGRGFAVVAD EVRKLAEKTQ KATKEIAVVV KSMQQEANDI QTNTHDINSI VSSIKGDVEE LKSTVKNNMI VAQAAKYTIY NINNRVFCGL AKLDHVVFKN NLYGMVFGLN SFDITSHKNC RLGKWYYEGA GKENFSNTSG YRALESHHAS VHAEANDLVK AVQEDHITDS KYLEHKVHLM EDSAKHVREN IDKMFYEKQD ELNKIIEKIQ KGE // ID O25709_HELPY Unreviewed; 171 AA. AC O25709; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08123.1}; GN OrderedLocusNames=HP_1076 {ECO:0000313|EMBL:AAD08123.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08123.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08123.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3K1H, ECO:0000213|PDB:3K1I} RP X-RAY CRYSTALLOGRAPHY (1.74 ANGSTROMS) OF 21-171. RX PubMed=20581225; DOI=10.1096/fj.10-155242; RA Lam W.W., Woo E.J., Kotaka M., Tam W.K., Leung Y.C., Ling T.K., RA Au S.W.; RT "Molecular interaction of flagellar export chaperone FliS and RT cochaperone HP1076 in Helicobacter pylori."; RL FASEB J. 24:4020-4032(2010). CC -!- INTERACTION: CC O25448:HP_0753; NbExp=3; IntAct=EBI-7608416, EBI-7499990; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08123.1; -; Genomic_DNA. DR PIR; D64654; D64654. DR RefSeq; NP_207867.1; NC_000915.1. DR RefSeq; WP_000353458.1; NC_018939.1. DR PDB; 3K1H; X-ray; 1.74 A; A=21-171. DR PDB; 3K1I; X-ray; 2.70 A; C/D=1-171. DR PDBsum; 3K1H; -. DR PDBsum; 3K1I; -. DR ProteinModelPortal; O25709; -. DR DIP; DIP-3285N; -. DR IntAct; O25709; 11. DR MINT; MINT-160299; -. DR STRING; 85962.HP1076; -. DR PaxDb; O25709; -. DR EnsemblBacteria; AAD08123; AAD08123; HP_1076. DR GeneID; 899612; -. DR KEGG; heo:C694_05560; -. DR KEGG; hpy:HP1076; -. DR PATRIC; 20593491; VBIHelPyl33062_1125. DR OMA; NDEVFSM; -. DR OrthoDB; EOG6PW241; -. DR BioCyc; HPY:HP1076-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032411; FliS_cochap. DR Pfam; PF16522; FliS_cochap; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3K1H, ECO:0000213|PDB:3K1I}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 171 AA; 19288 MW; A557C1901705C523 CRC64; MDILKTLQKH LGDVETSDFT TNAIEKSQQI AKFSRDMKNI NESVGALQVL QIACKKLFNK SMGLEDKDAL QASIIKQELR EIVENCQFLA SPLFDTQLNI AINDEIFSMI VVNPLDLLEN VGEFQAYLEE KLNEIKELLG YLSESLSNPK AFMPSFSNQS LKDLLSDNLR A // ID O25457_HELPY Unreviewed; 185 AA. AC O25457; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07812.1}; GN OrderedLocusNames=HP_0762 {ECO:0000313|EMBL:AAD07812.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07812.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07812.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07812.1; -; Genomic_DNA. DR PIR; B64615; B64615. DR RefSeq; NP_207555.1; NC_000915.1. DR RefSeq; WP_001220425.1; NC_018939.1. DR ProteinModelPortal; O25457; -. DR DIP; DIP-3504N; -. DR IntAct; O25457; 4. DR MINT; MINT-164853; -. DR STRING; 85962.HP0762; -. DR PaxDb; O25457; -. DR EnsemblBacteria; AAD07812; AAD07812; HP_0762. DR GeneID; 899336; -. DR KEGG; heo:C694_03920; -. DR KEGG; hpy:HP0762; -. DR PATRIC; 20592815; VBIHelPyl33062_0796. DR OMA; ACKNSQK; -. DR OrthoDB; EOG6GFGK0; -. DR BioCyc; HPY:HP0762-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 185 AA; 21180 MW; 7762BE1D1CC82C49 CRC64; MRIKAYFLRF IALVLIVLLG FSACKNSQKS QDSQNNTPQQ DSPKTYTAMD LNNQEYTITG DLDSLNISPD SNTPTLLVLS ALDNSLKDYA PSFNILKKTF KDRLRVLILL NKPYSSDAIK DFSAHFQADL MILNPKDTAL FDHLKYDALN HSFNMLLYHK HQLIKMYQGI VPIEMLQFDI SNLKD // ID O26098_HELPY Unreviewed; 372 AA. AC O26098; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=LPS biosynthesis protein {ECO:0000313|EMBL:AAD08618.1}; GN OrderedLocusNames=HP_1578 {ECO:0000313|EMBL:AAD08618.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08618.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08618.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08618.1; -; Genomic_DNA. DR PIR; B64717; B64717. DR RefSeq; NP_208369.1; NC_000915.1. DR RefSeq; WP_001163406.1; NC_018939.1. DR ProteinModelPortal; O26098; -. DR STRING; 85962.HP1578; -. DR CAZy; GT8; Glycosyltransferase Family 8. DR PaxDb; O26098; -. DR EnsemblBacteria; AAD08618; AAD08618; HP_1578. DR GeneID; 899713; -. DR KEGG; heo:C694_08175; -. DR KEGG; hpy:HP1578; -. DR PATRIC; 20594583; VBIHelPyl33062_1659. DR eggNOG; ENOG41082CB; Bacteria. DR eggNOG; COG1442; LUCA. DR OMA; IWSDVDV; -. DR OrthoDB; EOG6TJ7V7; -. DR BioCyc; HPY:HP1578-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR002495; Glyco_trans_8. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01501; Glyco_transf_8; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 372 AA; 44451 MW; B052F17C76E626BE CRC64; MQHEIPIAFA FDKNYLKTGA VALYSLLHAH RAVEGVFFSI YIFYSGLNED DLNRLQETIK PFKHFAALKC QDISATLDSL PTITDSAWVN RYSRMILVKY LLPSLFPQYS KMIWSDVDVV FCRAFADDFI ALDTSESFHL SGVISLVSQS VTEGFWFCNL DYMRKHSFTQ QVLEKFKIQV MRPYFKEPTL IHHLHAYIKE LPLHYCVLPY YYQEELDDLR HKASLPIRFE IIHQDKPNEF IHRQQIPYEI SQIQNILSNP IIMHYESDKD ALGIYNGKPW EFPLGNQYHL WLEMLAHTPF WKDFTLEMQK KRIEYRDIAQ KIHYFSQDKR LYEVSIRSIK VFASHYYNLV VKERWSKPIK TFFQKNFFQK KF // ID O25659_HELPY Unreviewed; 168 AA. AC O25659; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08069.1}; GN OrderedLocusNames=HP_1015 {ECO:0000313|EMBL:AAD08069.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08069.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08069.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08069.1; -; Genomic_DNA. DR RefSeq; NP_207805.1; NC_000915.1. DR RefSeq; WP_010875583.1; NC_000915.1. DR ProteinModelPortal; O25659; -. DR IntAct; O25659; 7. DR MINT; MINT-159621; -. DR STRING; 85962.HP1015; -. DR PaxDb; O25659; -. DR PRIDE; O25659; -. DR EnsemblBacteria; AAD08069; AAD08069; HP_1015. DR GeneID; 899550; -. DR KEGG; hpy:HP1015; -. DR PATRIC; 20593365; VBIHelPyl33062_1063. DR OMA; KKCLLGY; -. DR OrthoDB; EOG6VB6VR; -. DR BioCyc; HPY:HP1015-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 22 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 77 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 131 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 159 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 168 AA; 18742 MW; A75D669077649DBB CRC64; MLFIVSSGAK SFQISNLFNN QLAYIVLLSL FLCALGFIAG AIGFYRLSKI TRHLSFFENF AFSFLAVILC AILSYLVPNA SNALSLIGNG VSIFYLHKLY RELSLYTQER FFLSGFRLLL FSFMLALLGI LVQALVIIFL TTAVVLMCVA LGFLARAFLN FSQVFLKA // ID O24977_HELPY Unreviewed; 391 AA. AC O24977; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Molybdopterin biosynthesis protein (MoeA) {ECO:0000313|EMBL:AAD07237.1}; GN OrderedLocusNames=HP_0172 {ECO:0000313|EMBL:AAD07237.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07237.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07237.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07237.1; -; Genomic_DNA. DR PIR; D64541; D64541. DR RefSeq; NP_206971.1; NC_000915.1. DR RefSeq; WP_000622860.1; NC_018939.1. DR ProteinModelPortal; O24977; -. DR DIP; DIP-3439N; -. DR IntAct; O24977; 2. DR MINT; MINT-163563; -. DR STRING; 85962.HP0172; -. DR PaxDb; O24977; -. DR EnsemblBacteria; AAD07237; AAD07237; HP_0172. DR GeneID; 900141; -. DR KEGG; heo:C694_00850; -. DR KEGG; hpy:HP0172; -. DR PATRIC; 20591565; VBIHelPyl33062_0182. DR eggNOG; ENOG4105CVM; Bacteria. DR eggNOG; COG0303; LUCA. DR KO; K03750; -. DR OMA; CMLESHT; -. DR OrthoDB; EOG66MQMC; -. DR BioCyc; HPY:HP0172-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.980.10; -; 1. DR InterPro; IPR001453; MoaB/Mog_dom. DR InterPro; IPR008284; MoCF_biosynth_CS. DR InterPro; IPR005110; MoeA_linker/N. DR Pfam; PF00994; MoCF_biosynth; 1. DR Pfam; PF03453; MoeA_N; 1. DR SMART; SM00852; MoCF_biosynth; 1. DR SUPFAM; SSF53218; SSF53218; 1. DR SUPFAM; SSF63882; SSF63882; 1. DR TIGRFAMs; TIGR00177; molyb_syn; 1. DR PROSITE; PS01079; MOCF_BIOSYNTHESIS_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 175 309 MoCF_biosynth. FT {ECO:0000259|SMART:SM00852}. SQ SEQUENCE 391 AA; 43592 MW; AFFA705F815D599D CRC64; MISFKEALKI HSSIPIKPLE IEVISLFESI GRILAEDIIC IHALPKFNQS AMDGYGFKMQ DLGKKTQVVQ RIFAGDDVSA LEVKENECVK IMTGAMVPKG IETIVPIECM LESHTNFALA PKDFKINANI RQKGENASLN SVLVPKNTRL NYGHIALIAS QGLKEIKAFR KLKIALFSSG DELVPLGQNA LECQVYDVNS VGIFNMLKNY NTHFLGVLKD DKNLQLKILE SQDYDVILSS AGVSVGDKDF FKDALKEKNA LFYYEKVNLK PGKPVTLARL NQSMIIGLPG NPLSCLLVLR VLILPLLERL SLNKDFKLKP FKAQINAPLK LKGERAHLIL GNYSNHQFIP YNNNRYDSGA IQALARVDSI ALIDEGVRLV QGEIEILRFE N // ID O24911_HELPY Unreviewed; 673 AA. AC O24911; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Methyl-accepting chemotaxis transducer (TlpC) {ECO:0000313|EMBL:AAD07152.1}; GN OrderedLocusNames=HP_0082 {ECO:0000313|EMBL:AAD07152.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07152.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07152.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07152.1; -; Genomic_DNA. DR PIR; B64530; B64530. DR RefSeq; NP_206882.1; NC_000915.1. DR RefSeq; WP_000843374.1; NC_018939.1. DR ProteinModelPortal; O24911; -. DR IntAct; O24911; 3. DR STRING; 85962.HP0082; -. DR PaxDb; O24911; -. DR EnsemblBacteria; AAD07152; AAD07152; HP_0082. DR GeneID; 899111; -. DR KEGG; heo:C694_00400; -. DR KEGG; hpy:HP0082; -. DR PATRIC; 20591373; VBIHelPyl33062_0087. DR eggNOG; ENOG4105C8Q; Bacteria. DR eggNOG; COG0840; LUCA. DR KO; K03406; -. DR OMA; NHWRWAI; -. DR OrthoDB; EOG693GJ5; -. DR BioCyc; HPY:HP0082-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR InterPro; IPR004089; MCPsignal_dom. DR Pfam; PF00015; MCPsignal; 1. DR SMART; SM00283; MA; 1. DR PROSITE; PS50111; CHEMOTAXIS_TRANSDUC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 300 321 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 453 673 Methyl-accepting transducer. FT {ECO:0000259|PROSITE:PS50111}. SQ SEQUENCE 673 AA; 75214 MW; A917EB43621B3EF6 CRC64; MKSTRIGSKI VMMVCAVVIV ISAVMGVIIS YKVESVLQSQ ATELLQKKAQ LVSFKIQGIM KRIFMGANTL EKFLSDENSA INDTLKRRML SEFLLANPHV LLVSAIYTNN NERVITAMSM DSKIAYPNTT LNENMTNQIR SLKSITHSDP YYKEVNGDKI YGMDITLPLM GKNQNAIGAL NFFLNIDAFY TDVVGKKKSN TFLMGKDGRL LINPNREIQD KILSAINPDR RVAKAVEYYN QNEAGTLSYH SLSGNTETFL AIQPFDFFEE KGNNGNHWRW AIGKYVNKSL VFKEATNTKF IIITTLILGV LVLAFLVFII VSNLITKRIS RVNNTLNDFF NLLNNPKNNH AISLTPPSAY DEIGQMQASI NENILKTQES IQADNKAIQN SIEVTNYVEN GDFTQEIACV PKNKDLQALR NTINSIIQYF RNQIGANIES LNNALEHYKN LDFTHHIQNP KANMEKALNT LGQEISSMLK ASLGFANALN HESKDLKTCV DNLTKTAHKQ ERSLKNTTQS LEEITNIITT IDSKSQEMIS QGEDIKSVVD MIRDIADQTN LLALNAAIEA ARAGEHGRGF AVVADEVRKL AERTQKSLSE IEANINILVQ SIADNAESIK MQNKGVENIH NSINALQQDV QDNLTIANHS LQVSTKIDGI SQDILEDVSR KKF // ID O24972_HELPY Unreviewed; 173 AA. AC O24972; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07239.1}; GN OrderedLocusNames=HP_0165 {ECO:0000313|EMBL:AAD07239.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07239.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07239.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07239.1; -; Genomic_DNA. DR PIR; E64540; E64540. DR ProteinModelPortal; O24972; -. DR STRING; 85962.HP0165; -. DR PaxDb; O24972; -. DR PRIDE; O24972; -. DR EnsemblBacteria; AAD07239; AAD07239; HP_0165. DR PATRIC; 20591551; VBIHelPyl33062_0175. DR BioCyc; HPY:HP0165-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 132 155 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 173 AA; 20706 MW; BDDA60C2625D8835 CRC64; MRFSIFFKVV ALFMITLFSF GAFAYYFVSS QISHENYQNE MRHYQFVTTI NEILNNYSDY RAIEDYLYKI GFRETTIENL EKVLAKRRHQ LHHRNIGYAE VFKFSDMVFI LLKKDEHFVL YKDLHSVSYR NYFLAITVGL LLILFLFLFV LQSLLPLREL RSQVKPSLKG IKA // ID O25946_HELPY Unreviewed; 288 AA. AC O25946; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08441.1}; GN OrderedLocusNames=HP_1396 {ECO:0000313|EMBL:AAD08441.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08441.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08441.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08441.1; -; Genomic_DNA. DR PIR; D64694; D64694. DR ProteinModelPortal; O25946; -. DR STRING; 85962.HP1396; -. DR PaxDb; O25946; -. DR DNASU; 899900; -. DR EnsemblBacteria; AAD08441; AAD08441; HP_1396. DR KEGG; heo:C694_07215; -. DR PATRIC; 20594181; VBIHelPyl33062_1461. DR OMA; NSETQHY; -. DR OrthoDB; EOG6JHRG3; -. DR BioCyc; HPY:HP1396-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011089; DUF1524. DR Pfam; PF07510; DUF1524; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 141 287 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 288 AA; 33983 MW; 25389CCE68FF8C01 CRC64; MEKELVTWFN ILNKPPLEYL KGVEDFYNAY GEVLEMQDRH AHLLSYKDDD YLHVILCASI LHHYSDQDIE TLKELLVKFY YQDWVAGQTK TTRSQTCCNI INVLKEKKSM DYITSIVKEY LDDKNITQRF KDNLKDSNLY TKFYFINGKT AKKNSWVKPI LILVEYFMSD NANPACIKMD DDLHVERILP QNPDPSSQWM KDFSEEERGL YTHSLANLTL LGGKKNTKAL SQALNQDFKE KKEIYMGKTI MLDNKKTFRV MTCYDMTKND VCRYTEWTPT SLEKRKES // ID O24966_HELPY Unreviewed; 318 AA. AC O24966; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07228.1}; GN OrderedLocusNames=HP_0158 {ECO:0000313|EMBL:AAD07228.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07228.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07228.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07228.1; -; Genomic_DNA. DR PIR; F64539; F64539. DR RefSeq; NP_206957.1; NC_000915.1. DR RefSeq; WP_000952264.1; NC_018939.1. DR ProteinModelPortal; O24966; -. DR STRING; 85962.HP0158; -. DR PaxDb; O24966; -. DR EnsemblBacteria; AAD07228; AAD07228; HP_0158. DR GeneID; 900257; -. DR KEGG; heo:C694_00790; -. DR KEGG; hpy:HP0158; -. DR PATRIC; 20591537; VBIHelPyl33062_0168. DR eggNOG; ENOG4105GF5; Bacteria. DR eggNOG; ENOG410XSEK; LUCA. DR OMA; QISKMQA; -. DR OrthoDB; EOG6T1WPD; -. DR BioCyc; HPY:HP0158-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR029151; Sensor-like. DR SUPFAM; SSF103190; SSF103190; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 174 202 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 214 235 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 256 275 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 287 310 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 318 AA; 36392 MW; A771F51A0030894D CRC64; MLSRDIVQYS KIRTELYAYL TYLFSHNIRN HLPEITLDYL NKQIRKMHAE IKMAKNFFVL DAKGMLILKP SQLKEQGHKE GILEHDLTEG IELESHASFS DKYYFYQAVS EKRCILTDPY PSKKGNHLVV SASYPVYDQN NDLAFVVCLQ IPLRVAIEIS SPSKYFRTFS EGSMVMYFMI SIMLTLVSLL LFVKCISSFW TAIVNFSSFD IKEVFHPIVL LTLALATFDL VKAIFEEEVL GKNSGDNHHA IHRTMIRFLG SIIIALAIEA LMLVFKFSVS EPDKITYAVY LAVGVAVLLI SLAIYVKFAY SVLPKRER // ID O26028_HELPY Unreviewed; 355 AA. AC O26028; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08544.1}; GN OrderedLocusNames=HP_1498 {ECO:0000313|EMBL:AAD08544.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08544.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08544.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08544.1; -; Genomic_DNA. DR PIR; B64707; B64707. DR RefSeq; NP_208289.1; NC_000915.1. DR RefSeq; WP_001236083.1; NC_018939.1. DR ProteinModelPortal; O26028; -. DR STRING; 85962.HP1498; -. DR PaxDb; O26028; -. DR DNASU; 899793; -. DR EnsemblBacteria; AAD08544; AAD08544; HP_1498. DR GeneID; 899793; -. DR KEGG; heo:C694_07760; -. DR KEGG; hpy:HP1498; -. DR PATRIC; 20594407; VBIHelPyl33062_1572. DR eggNOG; ENOG4105JDQ; Bacteria. DR eggNOG; COG0795; LUCA. DR KO; K11720; -. DR OMA; MVLFYIT; -. DR OrthoDB; EOG6QRW58; -. DR BioCyc; HPY:HP1498-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR005495; LptG/LptF_permease. DR Pfam; PF03739; YjgP_YjgQ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 75 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 121 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 265 287 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 299 319 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 326 348 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 355 AA; 41208 MW; F6A5956F0694E711 CRC64; MRLFRFVGWY YFKYFLIVLL ALELFFVGID SLKYADKMPD SANMIILFFT YDILFALNYT LPISLLLAMV LFYIAFIKSN QYTALLSIGF SKCQILSPIF LISLFFTAIY VGLNATPFVY MEEKTQNLIY KDNSLSVSEH LLVKYNDDYV YFDKINPLLQ KAQNIKVFRL KDKTLESYAE AKEAFFEDKY WILHDTTIYE MPLSFELGAN ALSTTRLKTF KTLKNFRPKV LDTIYQNKPA VSITDALLSL HALVRQNADT KKVRSFLYVF AILPFFVPFL SVLIAYFSPS LARYENLALL GLKFIIITLV VWGLFFALGK FSISGILIPE IGVLSPFFIF LALSLWYFKK LNKRL // ID O25055_HELPY Unreviewed; 484 AA. AC O25055; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Guanosine pentaphosphate phosphohydrolase (GppA) {ECO:0000313|EMBL:AAD07341.1}; GN OrderedLocusNames=HP_0278 {ECO:0000313|EMBL:AAD07341.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07341.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07341.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07341.1; -; Genomic_DNA. DR PIR; F64554; F64554. DR RefSeq; NP_207076.1; NC_000915.1. DR RefSeq; WP_001074267.1; NC_018939.1. DR ProteinModelPortal; O25055; -. DR DIP; DIP-3059N; -. DR IntAct; O25055; 15. DR MINT; MINT-181971; -. DR STRING; 85962.HP0278; -. DR PaxDb; O25055; -. DR EnsemblBacteria; AAD07341; AAD07341; HP_0278. DR GeneID; 899192; -. DR KEGG; heo:C694_01405; -. DR KEGG; hpy:HP0278; -. DR PATRIC; 20591783; VBIHelPyl33062_0289. DR eggNOG; ENOG4105C9X; Bacteria. DR eggNOG; COG0248; LUCA. DR KO; K01524; -. DR OMA; QQNICHL; -. DR OrthoDB; EOG6M6JN6; -. DR BioCyc; HPY:HP0278-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR InterPro; IPR003695; Ppx_GppA. DR InterPro; IPR030673; PyroPPase_GppA_Ppx. DR Pfam; PF02541; Ppx-GppA; 1. DR PIRSF; PIRSF001267; Pyrophosphatase_GppA_Ppx; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD07341.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 19 298 Ppx-GppA. {ECO:0000259|Pfam:PF02541}. SQ SEQUENCE 484 AA; 54347 MW; 928BD66090F8EBE6 CRC64; MAKITTVIDI GSNSVRLAVF KKTSQFGFYL LFETKSKVRI SEGCYAFNGI LQEIPMQRAV KALSEFKEIA LKYKSKKILC VATSAVRDAP NRLEFVARVK KACGLQIKII DGQKEALYGG IACANLLHKN SGITIDIGGG STECALIEKG KIKDLISLDV GTIRIKEMFL DKDLEVKLAK AFIQKEVSKL PFKHKNAFGV GGTIRALSKV LMKRFCYPID SLHGYEIDAH KNLAFIEKIV MLKEDQLRLL GVNEERLDSI RSGALILSVV LEHLKTSLMI TSGVGVREGV FLSDLLRHHY HKFPPNINPS LISLKDRFLP HEKHSQKVKK ECVKLFEALS PLHKIDEKYL FHLKIAGELA SMGKILSVYL AHKHSAYFIL NALSYGFSHQ DRAIICLLAQ FSHKKIPKDN AIAHMSAMMP SLLTLQWLSF ILSLAENLCL TDSHHLKYTL EKNKLVIHSN DTLYLAKEML PKLVKPIPLT IEFA // ID O25641_HELPY Unreviewed; 83 AA. AC O25641; Q7B7Q1; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08038.1}; GN OrderedLocusNames=HP_0993 {ECO:0000313|EMBL:AAD08038.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08038.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08038.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08038.1; -; Genomic_DNA. DR PIR; A64644; A64644. DR RefSeq; NP_207784.1; NC_000915.1. DR RefSeq; WP_000006537.1; NC_018939.1. DR ProteinModelPortal; O25641; -. DR IntAct; O25641; 1. DR STRING; 85962.HP0993; -. DR PaxDb; O25641; -. DR EnsemblBacteria; AAD08038; AAD08038; HP_0993. DR GeneID; 899526; -. DR KEGG; heo:C694_05125; -. DR KEGG; hpy:HP0993; -. DR PATRIC; 20593311; VBIHelPyl33062_1037. DR OMA; PMENIQY; -. DR OrthoDB; EOG63Z7BZ; -. DR BioCyc; HPY:HP0993-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 83 AA; 9575 MW; D1425E417DCDC19E CRC64; MSFAPMLLAT INNSIGNKDK HVSLEYLIGL FMDKKTTNLS NTDKYIIGTI QTEALEQEIE WFSQDYHIPM ENILHVLSIN PYQ // ID O25804_HELPY Unreviewed; 329 AA. AC O25804; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Aldo-keto reductase, putative {ECO:0000313|EMBL:AAD08243.1}; GN OrderedLocusNames=HP_1193 {ECO:0000313|EMBL:AAD08243.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08243.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08243.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08243.1; -; Genomic_DNA. DR PIR; A64669; A64669. DR RefSeq; NP_207984.1; NC_000915.1. DR RefSeq; WP_001187418.1; NC_000915.1. DR ProteinModelPortal; O25804; -. DR STRING; 85962.HP1193; -. DR PaxDb; O25804; -. DR PRIDE; O25804; -. DR EnsemblBacteria; AAD08243; AAD08243; HP_1193. DR GeneID; 899955; -. DR KEGG; hpy:HP1193; -. DR PATRIC; 20593745; VBIHelPyl33062_1250. DR eggNOG; ENOG4105CPC; Bacteria. DR eggNOG; COG0667; LUCA. DR OMA; WGMSEAG; -. DR OrthoDB; EOG69WFJ0; -. DR BioCyc; HPY:HP1193-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.20.20.100; -; 1. DR InterPro; IPR001395; Aldo/ket_red/Kv-b. DR InterPro; IPR023210; NADP_OxRdtase_dom. DR PANTHER; PTHR11732; PTHR11732; 1. DR Pfam; PF00248; Aldo_ket_red; 1. DR SUPFAM; SSF51430; SSF51430; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 14 306 Aldo_ket_red. {ECO:0000259|Pfam:PF00248}. SQ SEQUENCE 329 AA; 37074 MW; BA9F4A730BDE36CE CRC64; MQQRHLGPLK VGALALGCMG MTYGYGEVHD KKQMVKLIHK ALELGINFFD TAEAYGEDNE KLLGEAIKPF KDKVVVASKF GIYYADPNDK YATMFLDSSP NRIKSAIEGS LKRLKVECID LYYQHRMDTN TPIGEVAEVM QLLIKEGKIK AWGMSEAGLS SIQKAHQICP LSALQSEYSL WWREPEKEIL GFLEKEKIGF VAFSPLGKGF LGAKFEKNAT FASEDFRSVS PRFNQENLAK NYALVELIQD HAHAKGVTPA QLALSWILHT QKIIVPLFGT TKESRLIENI GALQVSWSQK ELEIFQKELT AIKIEGARYP ERINEMVNQ // ID O26063_HELPY Unreviewed; 228 AA. AC O26063; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08576.1}; GN OrderedLocusNames=HP_1537 {ECO:0000313|EMBL:AAD08576.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08576.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08576.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08576.1; -; Genomic_DNA. DR PIR; A64712; A64712. DR RefSeq; NP_208328.1; NC_000915.1. DR RefSeq; WP_010875639.1; NC_018939.1. DR ProteinModelPortal; O26063; -. DR DIP; DIP-3442N; -. DR IntAct; O26063; 16. DR MINT; MINT-160546; -. DR STRING; 85962.HP1537; -. DR REBASE; 56813; Hpy26695ORF7960P. DR PaxDb; O26063; -. DR EnsemblBacteria; AAD08576; AAD08576; HP_1537. DR GeneID; 899753; -. DR KEGG; heo:C694_07965; -. DR KEGG; hpy:HP1537; -. DR PATRIC; 20594497; VBIHelPyl33062_1616. DR eggNOG; ENOG41070EA; Bacteria. DR eggNOG; ENOG410YX4K; LUCA. DR OMA; FSKLTSH; -. DR OrthoDB; EOG676Z2S; -. DR BioCyc; HPY:HP1537-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 228 AA; 26845 MW; 79CF28899145C741 CRC64; MLEKVFQEIT NKRKFFASSS TGEQFENQFR NELKKHFSEI NGDLTEELSH IEEKPNKEIK TTFNQLKKQV LEKNHPHTLK NPFSNLTSHF LYQPFGSQNY PDFLVFIFDY VVGIEIKFSK NDKGEKNLQT SRPMWNSNLP KPNAIYVYGV ANANITFFKG SDILSYETRE VLLKYFDILD KDERSLKNAL KDLENPFGFA PYIRKAYEHK RNFLTTTRLK ASFRPTTF // ID O25824_HELPY Unreviewed; 352 AA. AC O25824; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Oxygen-independent coproporphyrinogen III oxidase (HemN) {ECO:0000313|EMBL:AAD08271.1}; GN OrderedLocusNames=HP_1226 {ECO:0000313|EMBL:AAD08271.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08271.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08271.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08271.1; -; Genomic_DNA. DR PIR; B64673; B64673. DR RefSeq; NP_208018.1; NC_000915.1. DR RefSeq; WP_000783953.1; NC_000915.1. DR ProteinModelPortal; O25824; -. DR STRING; 85962.HP1226; -. DR PaxDb; O25824; -. DR PRIDE; O25824; -. DR EnsemblBacteria; AAD08271; AAD08271; HP_1226. DR GeneID; 899078; -. DR KEGG; hpy:HP1226; -. DR PATRIC; 20593823; VBIHelPyl33062_1282. DR eggNOG; ENOG4105CSA; Bacteria. DR eggNOG; COG0635; LUCA. DR KO; K02495; -. DR OMA; PINHLSA; -. DR OrthoDB; EOG683S9D; -. DR BioCyc; HPY:HP1226-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004109; F:coproporphyrinogen oxidase activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0006779; P:porphyrin-containing compound biosynthetic process; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR004559; Coprogen_oxidase_HemN-rel. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00539; hemN_rel; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 7 223 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 352 AA; 40196 MW; 79A57B704EC12B8A CRC64; MKMREINMIL YIHIPFCENK CGYCAFNSYE NKHGLKEEYT QALCLDLKHA LSQTDEPIES VFIGGGTPNT LSVKAFERIF ESIYQHASLS LDCEITTEAN PELITKAWCQ GLKGLGINRL SLGVQSFRED KLLFLERQHS KNIAPAIETI LKSGIENISI DLIYNTPLDN ENSLKEELKL AKELPINHLS AYALSVEKNT NLEKNAKKPS CAHFDNVVRE ILEGFSFKQY EVSNYARNYQ VKHNLAYWGA KDYLGCGAGA VGCVANERFF AKKLIENYIK DPLQRQVETL NKQDKRLEKL FLGLRCVLGV ELSFLDENKV KFLIEENKAF IKNNRLIASD FFMADEMALW LL // ID O25227_HELPY Unreviewed; 170 AA. AC O25227; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07552.1}; GN OrderedLocusNames=HP_0482 {ECO:0000313|EMBL:AAD07552.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07552.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07552.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07552.1; -; Genomic_DNA. DR PIR; B64580; B64580. DR ProteinModelPortal; O25227; -. DR DIP; DIP-3434N; -. DR IntAct; O25227; 2. DR MINT; MINT-169745; -. DR STRING; 85962.HP0482; -. DR REBASE; 56847; Hpy26695ORFFP. DR PaxDb; O25227; -. DR EnsemblBacteria; AAD07552; AAD07552; HP_0482. DR KEGG; heo:C694_02475; -. DR PATRIC; 20592237; VBIHelPyl33062_0507. DR OMA; IADVEYM; -. DR OrthoDB; EOG62RSBV; -. DR BioCyc; HPY:HP0482-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 170 AA; 19303 MW; 129D025EBBF92713 CRC64; MHISEVKTAF KIADVEYVKD STKLNFNYLK DLKDENNQPL SQNILTQNVA RVYLIVVNGE IKKIGGSQAD GGIKSTLNIY KDGGVKGRPN IRSFGVWYFL YHTILTGAKI EFYMIYQPNF ETQVKGLFGF CAIKDASISY KLLEQACLTD YRNNSNDALP EWNVQEQGKD // ID O25281_HELPY Unreviewed; 273 AA. AC O25281; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07621.1}; GN OrderedLocusNames=HP_0555 {ECO:0000313|EMBL:AAD07621.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07621.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07621.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07621.1; -; Genomic_DNA. DR PIR; C64589; C64589. DR RefSeq; NP_207350.1; NC_000915.1. DR RefSeq; WP_000792823.1; NC_018939.1. DR ProteinModelPortal; O25281; -. DR IntAct; O25281; 5. DR MINT; MINT-4065553; -. DR STRING; 85962.HP0555; -. DR PaxDb; O25281; -. DR PRIDE; O25281; -. DR EnsemblBacteria; AAD07621; AAD07621; HP_0555. DR GeneID; 900214; -. DR KEGG; hpy:HP0555; -. DR PATRIC; 20592385; VBIHelPyl33062_0581. DR eggNOG; ENOG4105GEZ; Bacteria. DR eggNOG; ENOG4111QBH; LUCA. DR OMA; KIENLMG; -. DR OrthoDB; EOG6QG8NJ; -. DR BioCyc; HPY:HP0555-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 273 AA; 31405 MW; 23E1856FD72324C0 CRC64; MKNLFLAFIV GGMLLNXDAL NDKVENLMGE RAYHTNKLFL ERLFKNRKAF YVMGRLDSLK LLNTLKENGL LSFNFDKPSM LKITFKASSN PLAFAKSINN SLSMMGYSYV LPIKMQSSSG ENVFSYDLKT EYVLDPNILI ETMKRHGFDF VDIRRVSLKE WEYDFSLQEV KLPNARVLVL SSEPVEFKEA SGKYWLSVNQ NAYLKISSNN PLWQPKIIFY DENLKIIQII AKENRQQEIA LNLLNGVRFI HITDAKNPIV LKNGISVVFD AMP // ID O25271_HELPY Unreviewed; 306 AA. AC O25271; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Cag pathogenicity island protein (Cag17) {ECO:0000313|EMBL:AAD07604.1}; GN OrderedLocusNames=HP_0538 {ECO:0000313|EMBL:AAD07604.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07604.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07604.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07604.1; -; Genomic_DNA. DR PIR; B64587; B64587. DR RefSeq; NP_207334.1; NC_000915.1. DR RefSeq; WP_000835501.1; NC_018939.1. DR ProteinModelPortal; O25271; -. DR IntAct; O25271; 4. DR STRING; 85962.HP0538; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25271; -. DR EnsemblBacteria; AAD07604; AAD07604; HP_0538. DR GeneID; 899271; -. DR KEGG; heo:C694_02775; -. DR KEGG; hpy:HP0538; -. DR PATRIC; 20592347; VBIHelPyl33062_0562. DR KO; K12102; -. DR OMA; FDEMINK; -. DR OrthoDB; EOG63C0R3; -. DR BioCyc; HPY:HP0538-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 66 100 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 306 AA; 34566 MW; 6D84D0C187562E38 CRC64; MKSIFKKLGS VALYSLVIYG GLNAINTALL PSEYKELVAL GFKKIKTLHQ RHDDEEVTKE EKEFATNALR EKLRNDRARA EQIQKNIEAF EKKNNSSIQK KAAKHKGLQE LNEINATPLN DNPNSNSSTE TKSNKDDNFD EMINKVNGAF VKPATPLVPD EWRTPEIEII INECIISSND YDGLRKCLIK GIKDQKILAP LLEKIQEIET ENNKFSRQHL SGLKLALNNS NNRTFLIASC AICEKRKKEM EQENNYQDTT NASEFGATDT KENEAKDAAF SNNRSKSELP NSVINQIEQS IAHGKK // ID O25273_HELPY Unreviewed; 381 AA. AC O25273; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Cag pathogenicity island protein (Cag19) {ECO:0000313|EMBL:AAD07606.1}; GN OrderedLocusNames=HP_0540 {ECO:0000313|EMBL:AAD07606.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07606.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07606.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07606.1; -; Genomic_DNA. DR PIR; D64587; D64587. DR RefSeq; NP_207336.1; NC_000915.1. DR RefSeq; WP_000649592.1; NC_018939.1. DR ProteinModelPortal; O25273; -. DR DIP; DIP-3352N; -. DR IntAct; O25273; 3. DR MINT; MINT-160856; -. DR STRING; 85962.HP0540; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25273; -. DR EnsemblBacteria; AAD07606; AAD07606; HP_0540. DR GeneID; 898750; -. DR KEGG; heo:C694_02785; -. DR KEGG; hpy:HP0540; -. DR PATRIC; 20592351; VBIHelPyl33062_0564. DR KO; K12104; -. DR OMA; IAYNTIG; -. DR OrthoDB; EOG68DCWP; -. DR BioCyc; HPY:HP0540-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 334 368 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 381 AA; 41569 MW; 7D5B310722AF287F CRC64; MKCFLSIFSF LTFCGLSLNG TEVVITLEPA LKAIQADAQA KQKTAQAELK AIEAQSSAKE KAIQAQIEGE LRTQLATMSA MLKGANGVIN GVNGMTGGFF AGSDILLGVM EGYSSALSAL GGNVKMIVEK QKINTQTEIQ NMQIALQKNN EIIKLKMNQQ NALLEALKNS FEPSVTLKTQ MEMLSQALGS SSDNAQYIAY NTIGIKAFEE TLKGFETWLK VAMQKATLID YNSLTGQALF QSAIYAPALS FFSSMGAPFG IIETFTLAPT KCPYLDGLKI SACLMEQVIQ NYRMIVALIQ NKLSDADFQN IAYLNGINGE IKTLKGSVDL NALIEVAILN AENHLNYIEN LEKKADLWEE QLKLERETTA RNIASSKVIV K // ID O25161_HELPY Unreviewed; 440 AA. AC O25161; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 91. DE SubName: Full=NifS-like protein {ECO:0000313|EMBL:AAD07474.1}; GN OrderedLocusNames=HP_0405 {ECO:0000313|EMBL:AAD07474.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07474.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07474.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07474.1; -; Genomic_DNA. DR PIR; E64570; E64570. DR RefSeq; NP_207203.1; NC_000915.1. DR RefSeq; WP_001147634.1; NC_018939.1. DR ProteinModelPortal; O25161; -. DR DIP; DIP-3349N; -. DR IntAct; O25161; 2. DR MINT; MINT-163659; -. DR STRING; 85962.HP0405; -. DR PaxDb; O25161; -. DR EnsemblBacteria; AAD07474; AAD07474; HP_0405. DR GeneID; 900218; -. DR KEGG; heo:C694_02060; -. DR KEGG; hpy:HP0405; -. DR PATRIC; 20592051; VBIHelPyl33062_0419. DR eggNOG; ENOG4107SMS; Bacteria. DR eggNOG; COG0520; LUCA. DR OMA; ETRAGCS; -. DR OrthoDB; EOG6XHC0J; -. DR BioCyc; HPY:HP0405-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00266; Aminotran_5; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 45 428 Aminotran_5. {ECO:0000259|Pfam:PF00266}. SQ SEQUENCE 440 AA; 48494 MW; 4EE4C8C0CE256ED7 CRC64; MQAFLNRSFA PLLNPNESPL EQVKSSIILK KGVSYFDWGA SGLASVLVEK RVKSLLPYYA NAHSVASKHA ILMGMLLKEC QEKLKRSLNL SANHCVLSAG YGASSAIKKF QEILGVCIPS KTKKNLEPYL KDMALKRVIV GPYEHHSNEI SWREGLCEVV RIPLNEHGLL DLEILEQTLK KSPNSLVSIS AASNVTGILT PLKEVSSLCK KYKAALALDL ANFSAHANPK DCEYQTGFYA PHKLLGGIGG CGLLGISKDL IDTQIAPSFS AGGVIKYANR TRHEFIDELP LREEFGTPGL LQFYRSALAY QLRDECGLDF IHKKENNLLR VLMHGLKDLP AINIYGNLTA HRVGVVAFNI GGISPYDLAR VLSYEYAIET RAGCSCAGPY GHDLLNLNAQ KSSDFNAKPG WLRVSLHFTH SINDIDYLLD SLKKAVKKLR // ID O25213_HELPY Unreviewed; 255 AA. AC O25213; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07528.1}; GN OrderedLocusNames=HP_0466 {ECO:0000313|EMBL:AAD07528.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07528.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07528.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07528.1; -; Genomic_DNA. DR PIR; B64578; B64578. DR RefSeq; NP_207264.1; NC_000915.1. DR RefSeq; WP_000402681.1; NC_018939.1. DR ProteinModelPortal; O25213; -. DR DIP; DIP-3542N; -. DR IntAct; O25213; 5. DR MINT; MINT-179355; -. DR STRING; 85962.HP0466; -. DR PaxDb; O25213; -. DR DNASU; 898834; -. DR EnsemblBacteria; AAD07528; AAD07528; HP_0466. DR GeneID; 898834; -. DR KEGG; heo:C694_02390; -. DR KEGG; hpy:HP0466; -. DR PATRIC; 20592203; VBIHelPyl33062_0490. DR OMA; LFYFYNT; -. DR OrthoDB; EOG6XM79B; -. DR BioCyc; HPY:HP0466-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.3680.10; -; 1. DR InterPro; IPR007791; DjlA_N. DR InterPro; IPR029024; TerB-like. DR Pfam; PF05099; TerB; 1. DR SUPFAM; SSF158682; SSF158682; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 92 174 TerB. {ECO:0000259|Pfam:PF05099}. SQ SEQUENCE 255 AA; 29846 MW; 6C8734B95804767A CRC64; MEIILLIIAA VVLFYFYNTL KEYLKNPLNP KTKTEEYDLK NDPYLLAQSS PLDKFKQTQT GAYMRLLKFL DIQKNALDNA LRTLFIHELE QPLNSEQQNL AKELLNEPVD KKENFESLCQ EIADHTHGEY TKRLKLVEFL MLLAYADGIL DSKEKELFLD VGVFLQIDNQ DFNELYDNFE RFNAIEIPMS LEEAKSLFEI QTHTTKQDLE KKALDLSAPY YHKMNDNKRY SEQDFISLKK IAIASQLLEN DLKDS // ID O24986_HELPY Unreviewed; 404 AA. AC O24986; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07264.1}; GN OrderedLocusNames=HP_0186 {ECO:0000313|EMBL:AAD07264.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07264.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07264.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07264.1; -; Genomic_DNA. DR PIR; B64543; B64543. DR RefSeq; NP_206985.1; NC_000915.1. DR RefSeq; WP_010875451.1; NC_000915.1. DR ProteinModelPortal; O24986; -. DR STRING; 85962.HP0186; -. DR PaxDb; O24986; -. DR PRIDE; O24986; -. DR EnsemblBacteria; AAD07264; AAD07264; HP_0186. DR GeneID; 900261; -. DR KEGG; hpy:HP0186; -. DR PATRIC; 20591595; VBIHelPyl33062_0197. DR eggNOG; COG1479; LUCA. DR OMA; GSQKFDG; -. DR OrthoDB; EOG6TTVKQ; -. DR BioCyc; HPY:HP0186-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011089; DUF1524. DR Pfam; PF07510; DUF1524; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 251 392 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 404 AA; 47149 MW; 8C523CB8286E67C2 CRC64; MSEEEVNERL EVLLEMVLMR FEEPDPGRAI RTFQSVNDRG VPLLLLDKLK SLLIYYSNIF CDGKRGLDQF IIDHFGEIFK IFAKIKKSDH ISSVGGFDEG DIFRYHAGSQ KFDGIEFLGH YEASTDKTYE KLKDELKKIK KSKLKSFIQS YVSDLKNFYQ AFLDLLSEID TNPTTFKVML INKIDSSFFN SLIRLKINNE LDDETLKLFA KTDIVLFKAT RDRPGTDNLI NAYLKKGKEG LKSEMIAQCR NDIGLAFWQS VNNASNSSCF HYIFFEKNCQ EMGLADLKKL IPRKQFSQEK EHIIPINLLK QESNNKIRDL GFEDKKDLED YIDTYGNLIS LEKSLNRKAS DKDLYGKDEI YKSSEIPFNR RFDTKNFNKK ALVKRNEEMR EWLIDTFFKD FAAH // ID O25147_HELPY Unreviewed; 76 AA. AC O25147; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07465.1}; GN OrderedLocusNames=HP_0385 {ECO:0000313|EMBL:AAD07465.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07465.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07465.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07465.1; -; Genomic_DNA. DR PIR; A64568; A64568. DR RefSeq; NP_207183.1; NC_000915.1. DR RefSeq; WP_000983762.1; NC_000915.1. DR ProteinModelPortal; O25147; -. DR STRING; 85962.HP0385; -. DR PaxDb; O25147; -. DR PRIDE; O25147; -. DR EnsemblBacteria; AAD07465; AAD07465; HP_0385. DR GeneID; 900276; -. DR KEGG; hpy:HP0385; -. DR PATRIC; 20592009; VBIHelPyl33062_0398. DR OMA; ATQHEEK; -. DR OrthoDB; EOG6C01CJ; -. DR BioCyc; HPY:HP0385-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 8 49 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 76 AA; 8591 MW; 4DDAA17188A7A701 CRC64; MMQSLSLLNQ LGAKIDELIE KIKKQEEELN ALRQANTTLN AQNEEKDIQI AILYDELSAK DKGIQGLYDK ISDLLS // ID O25316_HELPY Unreviewed; 54 AA. AC O25316; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07666.1}; GN OrderedLocusNames=HP_0594 {ECO:0000313|EMBL:AAD07666.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07666.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07666.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07666.1; -; Genomic_DNA. DR PIR; B64594; B64594. DR RefSeq; NP_207389.1; NC_000915.1. DR RefSeq; WP_000394806.1; NC_018939.1. DR ProteinModelPortal; O25316; -. DR STRING; 85962.HP0594; -. DR PaxDb; O25316; -. DR EnsemblBacteria; AAD07666; AAD07666; HP_0594. DR GeneID; 899286; -. DR KEGG; heo:C694_03065; -. DR KEGG; hpy:HP0594; -. DR PATRIC; 20592465; VBIHelPyl33062_0621. DR OMA; WAMAAIM; -. DR OrthoDB; EOG6Q8J8J; -. DR BioCyc; HPY:HP0594-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 49 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 54 AA; 6085 MW; 1E2AB0688E67C297 CRC64; MEFLGLILSL AAILIAFKKP EKENWAFGIL MVVWLVELII FIAHSSSVLP NMNL // ID O25714_HELPY Unreviewed; 551 AA. AC O25714; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 113. DE SubName: Full=Multidrug resistance protein (MsbA) {ECO:0000313|EMBL:AAD08127.1}; GN OrderedLocusNames=HP_1082 {ECO:0000313|EMBL:AAD08127.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08127.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08127.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08127.1; -; Genomic_DNA. DR PIR; B64655; B64655. DR RefSeq; NP_207873.1; NC_000915.1. DR RefSeq; WP_000764940.1; NC_018939.1. DR ProteinModelPortal; O25714; -. DR STRING; 85962.HP1082; -. DR PaxDb; O25714; -. DR EnsemblBacteria; AAD08127; AAD08127; HP_1082. DR GeneID; 899618; -. DR KEGG; heo:C694_05590; -. DR KEGG; hpy:HP1082; -. DR PATRIC; 20593503; VBIHelPyl33062_1131. DR eggNOG; ENOG4105BZ1; Bacteria. DR eggNOG; COG1132; LUCA. DR KO; K11085; -. DR OMA; HMLKILP; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP1082-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011527; ABC1_TM_dom. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00664; ABC_membrane; 1. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90123; SSF90123; 1. DR PROSITE; PS50929; ABC_TM1F; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 178 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 245 263 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 269 287 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 20 302 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50929}. FT DOMAIN 334 550 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 551 AA; 61949 MW; 0DB6635DEC5A98A0 CRC64; MKLFFKRYSK YLKEHYKSFI VVLFSSLVVA LSTAWGTYLV KPTLDEIFIN KDTHMLKILP FLVILAYLGK SGGMYLGTYF TNFIGLDIVK KIRNTMLESL LKMEMDFFNR TKKGELIARI TNDIGLIRAS LSNYLSESIR EGLTIVGLVG VVIYQSPKLA LVGLVIMPLA AIPISKIIRK VKKLAKSHQE SNAKITARLS EVFNNVEAIK ISNGEKLEHK AFVKENEAFF KIGIKNIAVA EISSPLMEFL GSIAIALVIY LGGNEVIRGH ISVGAFFSFI TALFMLYTPI KRLTRIVSNF QEALVASDRI HEILEREPAI VDGELTLNNA IHTIEFKKVW LAYTLDNQER YVLNDISLKF QQNEIIALKG ESGSGKSSLV NLILRLYEPS KGEIFINDQK IESITQKSLR EKISVVTQRV FIFNGSVAEN VAYGLEIDEV KIKECLKKAQ ALDFVEKMPH GIESVLDEFG ANLSGGQRQR IAIARALYKD VQVLIFDEAT SALDNNTEES VKQSILELKQ NRLIILISHN PSTLKLATKH VKLEHGRLTE C // ID O25062_HELPY Unreviewed; 157 AA. AC O25062; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07360.1}; GN OrderedLocusNames=HP_0288 {ECO:0000313|EMBL:AAD07360.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07360.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07360.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07360.1; -; Genomic_DNA. DR PIR; H64555; H64555. DR RefSeq; NP_207086.1; NC_000915.1. DR RefSeq; WP_000713359.1; NC_018939.1. DR ProteinModelPortal; O25062; -. DR DIP; DIP-3138N; -. DR IntAct; O25062; 1. DR MINT; MINT-185950; -. DR STRING; 85962.HP0288; -. DR PaxDb; O25062; -. DR EnsemblBacteria; AAD07360; AAD07360; HP_0288. DR GeneID; 900108; -. DR KEGG; heo:C694_01455; -. DR KEGG; hpy:HP0288; -. DR PATRIC; 20591803; VBIHelPyl33062_0299. DR OMA; SEWLFKE; -. DR OrthoDB; EOG6N94DK; -. DR BioCyc; HPY:HP0288-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR025423; DUF4149. DR Pfam; PF13664; DUF4149; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 51 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 105 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 152 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 117 DUF4149. {ECO:0000259|Pfam:PF13664}. SQ SEQUENCE 157 AA; 17507 MW; BCF508D2675DD921 CRC64; MKKFGLGVYL LLLGILGGSL IILGAIVAPI VFKASSVLPE LHLTPFESGK LMAQIFVRFN YVLGAIGFVV LLYEIISFIY YKRSLVYLIL GVAIGALCLL FVFYYTPYIL NAQKAGEAAL QSAEFARSHA QSEWLFKELF VLVCALFFWR LLGKNVL // ID O24859_HELPY Unreviewed; 275 AA. AC O24859; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07090.1}; GN OrderedLocusNames=HP_0014 {ECO:0000313|EMBL:AAD07090.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07090.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07090.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07090.1; -; Genomic_DNA. DR PIR; F64521; F64521. DR RefSeq; NP_206816.1; NC_000915.1. DR RefSeq; WP_001154906.1; NC_018939.1. DR ProteinModelPortal; O24859; -. DR STRING; 85962.HP0014; -. DR PaxDb; O24859; -. DR EnsemblBacteria; AAD07090; AAD07090; HP_0014. DR GeneID; 899093; -. DR KEGG; heo:C694_00065; -. DR KEGG; hpy:HP0014; -. DR PATRIC; 20591221; VBIHelPyl33062_0012. DR eggNOG; ENOG4105F3Y; Bacteria. DR eggNOG; ENOG410XRW8; LUCA. DR OMA; SQKKNFS; -. DR OrthoDB; EOG63JR6M; -. DR BioCyc; HPY:HP0014-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 275 AA; 31681 MW; 9842919F4FC9CF55 CRC64; MQEFLGFGVV GNFAGHLEQA GESHSFINMK SEEKDAPKGL FPFYIPYENC YLGRCCIDNH KIILPSDLDL RVQAEPEIAL ECDVKYDEKH LVAKLVPNFF MAFNDASVRN LDAAKLSQKK NFSPASKGIG QKLPIDRFVY GGVCNNFSIA SFLKYNNVWH IYGENSKLLK YEFFYQKLLD WIKDQLNHQQ DGDSLEALRP FLERHNFPTK MIFAIGATPY MPFAQEHFLQ KGDEVVIVAY NHLQYSFEKI QNLLEEDALQ AKEHANLSYV YQIVE // ID O25405_HELPY Unreviewed; 29 AA. AC O25405; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07759.1}; GN OrderedLocusNames=HP_0698 {ECO:0000313|EMBL:AAD07759.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07759.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07759.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07759.1; -; Genomic_DNA. DR PIR; B64607; B64607. DR RefSeq; WP_010875527.1; NC_018939.1. DR STRING; 85962.HP0698; -. DR PaxDb; O25405; -. DR PRIDE; O25405; -. DR EnsemblBacteria; AAD07759; AAD07759; HP_0698. DR BioCyc; HPY:HP0698-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 29 AA; 3300 MW; 050D855F6F1CA6B2 CRC64; MKVTQGIAND FFALTNTIFS ILKIRKCIL // ID O25417_HELPY Unreviewed; 240 AA. AC O25417; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 117. DE SubName: Full=ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAD07765.1}; GN OrderedLocusNames=HP_0715 {ECO:0000313|EMBL:AAD07765.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07765.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07765.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07765.1; -; Genomic_DNA. DR PIR; C64609; C64609. DR RefSeq; NP_207509.1; NC_000915.1. DR RefSeq; WP_000353241.1; NC_018939.1. DR ProteinModelPortal; O25417; -. DR IntAct; O25417; 3. DR STRING; 85962.HP0715; -. DR PaxDb; O25417; -. DR EnsemblBacteria; AAD07765; AAD07765; HP_0715. DR GeneID; 899320; -. DR KEGG; heo:C694_03680; -. DR KEGG; hpy:HP0715; -. DR PATRIC; 20592717; VBIHelPyl33062_0747. DR eggNOG; ENOG4108IUZ; Bacteria. DR eggNOG; COG1137; LUCA. DR KO; K06861; -. DR OMA; RAYIMHQ; -. DR OrthoDB; EOG6VXF80; -. DR BioCyc; HPY:HP0715-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR030921; LPS_export_LptB. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR04406; LPS_export_lptB; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07765.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07765.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 236 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 240 AA; 26442 MW; 08EAA62867B9819F CRC64; MDILKAEHLN KQIKKTKIVS DVSLEVKSGE VVGLLGPNGA GKTTTFYMIC GLLEPSGGSV YLNDVNLAKY PLHKRSNLGI GYLPQESSIF KELSVEENLA LAGESTFKNS KESEEKMESL LDAFNIQAIR ERKGMSLSGG ERRRVEIARA LMKNPKFVLL DEPFAGVDPI AVIDIQKIIE SLIGLNIGVL ITDHNVRETL SVCHRAYVIK SGTLLASGNA NEIYENALVR KYYLGENFKV // ID O25940_HELPY Unreviewed; 166 AA. AC O25940; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08438.1}; GN OrderedLocusNames=HP_1390 {ECO:0000313|EMBL:AAD08438.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08438.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08438.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08438.1; -; Genomic_DNA. DR PIR; F64693; F64693. DR RefSeq; NP_208181.1; NC_000915.1. DR RefSeq; WP_001294251.1; NC_018939.1. DR ProteinModelPortal; O25940; -. DR DIP; DIP-3717N; -. DR IntAct; O25940; 31. DR MINT; MINT-159643; -. DR STRING; 85962.HP1390; -. DR PaxDb; O25940; -. DR EnsemblBacteria; AAD08438; AAD08438; HP_1390. DR GeneID; 899907; -. DR KEGG; heo:C694_07180; -. DR KEGG; hpy:HP1390; -. DR PATRIC; 20594167; VBIHelPyl33062_1454. DR BioCyc; HPY:HP1390-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 166 AA; 19097 MW; A2D86A68BD1F2C7E CRC64; MSEPLETLDK DKQAMSEAIK KDIEKDKENL ARVKADKKVK ADESEKGYEK DDDKKAENLD KEIAKDKASP NDNELYEEDD RVKRDKERDD ALRDKEKAKD DACMVRADDD TIEDDEEYGD DDKLRDEILG VMEELCDTLN DNLNFKKVVC MGGKVSIAFK FLIFCS // ID O25532_HELPY Unreviewed; 246 AA. AC O25532; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07915.1}; GN OrderedLocusNames=HP_0861 {ECO:0000313|EMBL:AAD07915.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07915.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07915.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07915.1; -; Genomic_DNA. DR PIR; E64627; E64627. DR RefSeq; NP_207655.1; NC_000915.1. DR RefSeq; WP_001178201.1; NC_018939.1. DR ProteinModelPortal; O25532; -. DR STRING; 85962.HP0861; -. DR PaxDb; O25532; -. DR EnsemblBacteria; AAD07915; AAD07915; HP_0861. DR GeneID; 899390; -. DR KEGG; heo:C694_04410; -. DR KEGG; hpy:HP0861; -. DR PATRIC; 20593011; VBIHelPyl33062_0893. DR eggNOG; ENOG4108Z2G; Bacteria. DR eggNOG; COG2836; LUCA. DR KO; K09792; -. DR OMA; IMLINHQ; -. DR OrthoDB; EOG6DNT6V; -. DR BioCyc; HPY:HP0861-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 155 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 161 186 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 219 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 246 AA; 27189 MW; C6AEAF59F178B017 CRC64; MQMMHNLSFL GMFLAALSMS LGHCVGMCGG IVSAFSQIRF SKVTSFSYQL TCHALYNVGR ISTYMLLGAI AASLGHSLSV SMGFRGVLFI SMGIILICLA LLGARMEKLS FQIPFISFLM KKTLQSQNIL GLYFLGVLNG FLPCMMVYSF LASVILSHSA FMGAMLGLSF GLGTSMPLFL MGIFLSKISV SYRKFFNLLS KILMGVFGLY ILYMGIMLIN HKMPHAMHHQ NNTTQHDHKG VHSHEH // ID O25649_HELPY Unreviewed; 370 AA. AC O25649; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08050.1}; GN OrderedLocusNames=HP_1003 {ECO:0000313|EMBL:AAD08050.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08050.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08050.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08050.1; -; Genomic_DNA. DR PIR; C64645; C64645. DR ProteinModelPortal; O25649; -. DR IntAct; O25649; 6. DR PaxDb; O25649; -. DR PRIDE; O25649; -. DR EnsemblBacteria; AAD08050; AAD08050; HP_1003. DR PATRIC; 20593331; VBIHelPyl33062_1047. DR OrthoDB; EOG66MQJW; -. DR BioCyc; HPY:HP1003-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 294 328 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 370 AA; 43781 MW; AEE8EFBF2E113571 CRC64; MGSATSQIES LKKRENALFD HLDSLKSLLE KTHWEKEKFT PPINEKELNR QLKEVRWFNK ETPTSKNTYK KIQKLAVYKS PLIKDYLYTI KKLFATQKKI IDLEKNYKDL RALKEEFSKD LETDLSHSKK RFELYTRLKS MSKVFISKSI VKNLEKIALD FKSDRHSISQ RAFEFFKYMN YQNLSLTDKG NMFLVAKFFK DSALLVNIAR FEMKKIDDSV KNSNPQDNLL DKQVWLNLLE HLKRLEEENY CFAKKRKEFL ETRAMELSKD LKFLTQANEN DLPIYERGQR DKIIKRCEKS LNFLQKELQC FKTLLKSASI ALENLQNNHQ ITAVTQDTQE NTNALKNTTQ DFNKTTNEPT NPNNNYGMDF // ID O25186_HELPY Unreviewed; 121 AA. AC O25186; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07507.1}; GN OrderedLocusNames=HP_0436 {ECO:0000313|EMBL:AAD07507.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07507.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07507.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07507.1; -; Genomic_DNA. DR PIR; D64574; D64574. DR ProteinModelPortal; O25186; -. DR DIP; DIP-3428N; -. DR IntAct; O25186; 20. DR MINT; MINT-168185; -. DR STRING; 85962.HP0436; -. DR PaxDb; O25186; -. DR PRIDE; O25186; -. DR EnsemblBacteria; AAD07507; AAD07507; HP_0436. DR PATRIC; 20592131; VBIHelPyl33062_0454. DR eggNOG; COG3843; LUCA. DR BioCyc; HPY:HP0436-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 121 AA; 13987 MW; 0D6A44F141414304 CRC64; MRAFFNSSMR EKLSQLKARQ QKQEMPANLS IIHALRATQE GFEDDGVMRN YDLLESQFKE NLTKEDRELL ESPKPNLEKL QELKIRLLEK NGIFKPPKQK SQISLVFGMN ALVPLGTIKT L // ID O25721_HELPY Unreviewed; 778 AA. AC O25721; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08136.1}; GN OrderedLocusNames=HP_1089 {ECO:0000313|EMBL:AAD08136.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08136.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08136.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08136.1; -; Genomic_DNA. DR PIR; A64656; A64656. DR RefSeq; NP_207880.1; NC_000915.1. DR RefSeq; WP_001047444.1; NC_018939.1. DR ProteinModelPortal; O25721; -. DR IntAct; O25721; 5. DR STRING; 85962.HP1089; -. DR PaxDb; O25721; -. DR EnsemblBacteria; AAD08136; AAD08136; HP_1089. DR GeneID; 899625; -. DR KEGG; heo:C694_05625; -. DR KEGG; hpy:HP1089; -. DR PATRIC; 20593517; VBIHelPyl33062_1138. DR eggNOG; ENOG4107UKC; Bacteria. DR eggNOG; COG2887; LUCA. DR eggNOG; COG3893; LUCA. DR OMA; FSSIEWH; -. DR OrthoDB; EOG6B09QQ; -. DR BioCyc; HPY:HP1089-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 778 AA; 90793 MW; 4A5C90060E2219BF CRC64; MNLEKLFLEK TPLFVFSSTR RLKHFYLEQG EGFLPNAMSM GNFFEQAFYI PNKKKIPNSA RLILMIDTIK AIAKEKKSIL EGLLLFENSF LGYLESTSFL FDLFDELSSA CIKLNELSSK DIYLDYEKHL EVLEMIYDRY IKKLEGLGFY DKIMQEKPAI LKEFFEHFSS IEWHLDGFMS VFERQCLLEA AELVPITLHL SCDKYNQKFL EFLNLKLETD CDYSIDFKTQ KILSQTPKRQ KIEPKLYANS SYLKQSALVL QTIEEYLQKD NDPNKMAIIT PNADFLPFLK LLDKNNNLNF AMGLGAKNSP YYTELVKILE DLETSDLDLS GSALLDLENI TLALLEQQSS KEKAPLKEAH SQIMHQYHLL KDTLKNYSLK DLLHLYLQEF EANFRLDDSS GGKIRVMDTL ETRGMQFDKI VIVDFNETCV PSLKDCDLFL NSALRKSLNL PTLLDKKNLQ KHYYYQLFKN SKEITLSYIE SETSKASNML LELNLHIEPI KDAYTLFAPS PLKDYQEEEI KAAIPKDFSF SASSLNAFLT CKRRFYYHYI KRFKESPKDE NNSAVGSLLH ELLKEAYEKD KTPHALEERL IWLLETRENI TPKERLDTLV VLKKIQAFYK KERERFNAEI TILDLEKSFE TIIQGVIFKG RIDRIDKTAD NEIILLDYKF KSDLKLDSMS KTQRGGLSPI EIAQISTDYQ MAIYAFALKN LGYKEPIKAF FYDLRKGELL EEEELILQAK MDHLEFSLIP KLKQEIDFEK TLEVKDCEYC SFKDMCNR // ID O25297_HELPY Unreviewed; 110 AA. AC O25297; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07649.1}; GN OrderedLocusNames=HP_0573 {ECO:0000313|EMBL:AAD07649.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07649.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07649.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07649.1; -; Genomic_DNA. DR PIR; E64591; E64591. DR RefSeq; NP_207368.1; NC_000915.1. DR RefSeq; WP_000495094.1; NC_018939.1. DR ProteinModelPortal; O25297; -. DR STRING; 85962.HP0573; -. DR PaxDb; O25297; -. DR EnsemblBacteria; AAD07649; AAD07649; HP_0573. DR GeneID; 900033; -. DR KEGG; heo:C694_02955; -. DR KEGG; hpy:HP0573; -. DR PATRIC; 20592419; VBIHelPyl33062_0598. DR eggNOG; ENOG4105JZY; Bacteria. DR eggNOG; ENOG4111SDE; LUCA. DR OMA; TDKYKAR; -. DR OrthoDB; EOG65XN3V; -. DR BioCyc; HPY:HP0573-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 29 110 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 110 AA; 13012 MW; 4EAECBECB46BCA02 CRC64; MFTQWFILTI AIVFILYMGV RTFFFKTVAK RQERTNASMK LTLQEAEILI QKHQLQLQRA LGNIDILTQE MSSLKTELKA LKQRNSEYKG ESDKYKNRIK ELEQKIEALL // ID O25880_HELPY Unreviewed; 377 AA. AC O25880; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Conserved hypothetical ATP-binding protein {ECO:0000313|EMBL:AAD08366.1}; GN OrderedLocusNames=HP_1321 {ECO:0000313|EMBL:AAD08366.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08366.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08366.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08366.1; -; Genomic_DNA. DR PIR; A64685; A64685. DR RefSeq; NP_208113.1; NC_000915.1. DR RefSeq; WP_001268291.1; NC_000915.1. DR ProteinModelPortal; O25880; -. DR DIP; DIP-3339N; -. DR IntAct; O25880; 6. DR MINT; MINT-171630; -. DR STRING; 85962.HP1321; -. DR PaxDb; O25880; -. DR PRIDE; O25880; -. DR EnsemblBacteria; AAD08366; AAD08366; HP_1321. DR GeneID; 898747; -. DR KEGG; hpy:HP1321; -. DR PATRIC; 20594023; VBIHelPyl33062_1382. DR eggNOG; ENOG4108VBP; Bacteria. DR eggNOG; COG1373; LUCA. DR KO; K07133; -. DR OMA; QAYAPLM; -. DR OrthoDB; EOG6C8MTN; -. DR BioCyc; HPY:HP1321-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD08366.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD08366.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 377 AA; 43873 MW; E5FB356BF7099F69 CRC64; MRYDYLNPIS FERKFMPLSC LHPFGPFETP KEPVLNNPLL KAPSSDKICL LGPMKSGKTT FALKLAKVFK NPVYINYNDM RLNQNILSSW LLKWHLEKKM DLLILDRIDR LDFSLPKLPK IVLIPNCLSP ITAPNFSLCY ALGLNFKEYT SFFKPNTPKN TLFNRFLRDG NALDSLFTEN EQEKILKKQE NIQLIFQAYA PLMAKICSYQ SKFVSAFYLY TQLKKELKTS KDTLYKLLHA LEKQRILFLV PNFENNKTKL YLCDFALPYS LTPSPSLLNV FENMVFLELY KQFPKYELYS HDNGIFILRE NSTNKLALIA HAFPTPHFLE KQLLWCHKHG FLNIIVVSIN APISATNTPY KHLNFIDFSL DIQSILV // ID O25468_HELPY Unreviewed; 227 AA. AC O25468; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07832.1}; GN OrderedLocusNames=HP_0778 {ECO:0000313|EMBL:AAD07832.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07832.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07832.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07832.1; -; Genomic_DNA. DR PIR; B64617; B64617. DR RefSeq; NP_207571.1; NC_000915.1. DR RefSeq; WP_001210707.1; NC_018939.1. DR ProteinModelPortal; O25468; -. DR STRING; 85962.HP0778; -. DR PaxDb; O25468; -. DR EnsemblBacteria; AAD07832; AAD07832; HP_0778. DR GeneID; 899342; -. DR KEGG; heo:C694_03995; -. DR KEGG; hpy:HP0778; -. DR PATRIC; 20592845; VBIHelPyl33062_0811. DR eggNOG; ENOG4108XUR; Bacteria. DR eggNOG; COG1427; LUCA. DR KO; K11782; -. DR OMA; MRFGKID; -. DR OrthoDB; EOG6HB9RQ; -. DR BioCyc; HPY:HP0778-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016836; F:hydro-lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00995; MqnA; 1. DR InterPro; IPR003773; Menaquinone_biosynth. DR InterPro; IPR030868; MqnA. DR Pfam; PF02621; VitK2_biosynth; 2. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 227 AA; 26739 MW; F2BC134244354817 CRC64; MRFGKIDYLN MLPFDVFIKS YPTPCYFKQF LRLKKTYPSK LNESFLFRRI DAGFISSIAG YPFALHSHSL GIVAYKEVLS VLVVDTKNAF DKESASSNAL SQALGLKGEV LIGNKALQFY YSNPKKDFID LAALWYEKKR LPFVFGRLCY YQNKDFYKRL SLAFKHQKTK IPYYILKEAA LKTNLKRQDI LNYLQKIYYT LGKKEQLGLK AFYRELLFKR IQKPKRF // ID O25158_HELPY Unreviewed; 524 AA. AC O25158; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 110. DE RecName: Full=D-3-phosphoglycerate dehydrogenase {ECO:0000256|RuleBase:RU363003}; DE EC=1.1.1.95 {ECO:0000256|RuleBase:RU363003}; GN OrderedLocusNames=HP_0397 {ECO:0000313|EMBL:AAD07461.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07461.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07461.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: 2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + CC NADH. {ECO:0000256|RuleBase:RU363003}. CC -!- CATALYTIC ACTIVITY: 3-phospho-D-glycerate + NAD(+) = 3- CC phosphonooxypyruvate + NADH. {ECO:0000256|RuleBase:RU363003}. CC -!- PATHWAY: Amino-acid biosynthesis; L-serine biosynthesis; L-serine CC from 3-phospho-D-glycerate: step 1/3. CC {ECO:0000256|RuleBase:RU363003}. CC -!- SIMILARITY: Belongs to the D-isomer specific 2-hydroxyacid CC dehydrogenase family. {ECO:0000256|RuleBase:RU363003}. CC -!- SIMILARITY: Contains 1 ACT domain. CC {ECO:0000256|RuleBase:RU363003}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07461.1; -; Genomic_DNA. DR PIR; E64569; E64569. DR RefSeq; NP_207195.1; NC_000915.1. DR RefSeq; WP_000285096.1; NC_018939.1. DR ProteinModelPortal; O25158; -. DR DIP; DIP-3725N; -. DR IntAct; O25158; 1. DR MINT; MINT-159526; -. DR STRING; 85962.HP0397; -. DR PaxDb; O25158; -. DR EnsemblBacteria; AAD07461; AAD07461; HP_0397. DR GeneID; 900244; -. DR KEGG; heo:C694_02015; -. DR KEGG; hpy:HP0397; -. DR PATRIC; 20592033; VBIHelPyl33062_0410. DR eggNOG; ENOG4108JQ1; Bacteria. DR eggNOG; COG0111; LUCA. DR KO; K00058; -. DR OMA; EWKRSKF; -. DR OrthoDB; EOG6VXFC3; -. DR BioCyc; HPY:HP0397-MONOMER; -. DR UniPathway; UPA00135; UER00196. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0004617; F:phosphoglycerate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0006564; P:L-serine biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.30.1330.90; -; 1. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR029009; ASB_dom. DR InterPro; IPR006139; D-isomer_2_OHA_DH_cat_dom. DR InterPro; IPR029752; D-isomer_DH_CS1. DR InterPro; IPR006140; D-isomer_DH_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006236; PGDH. DR Pfam; PF00389; 2-Hacid_dh; 1. DR Pfam; PF02826; 2-Hacid_dh_C; 1. DR Pfam; PF01842; ACT; 1. DR SUPFAM; SSF143548; SSF143548; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01327; PGDH; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS00065; D_2_HYDROXYACID_DH_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|RuleBase:RU363003}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW NAD {ECO:0000256|RuleBase:RU363003}; KW Oxidoreductase {ECO:0000256|RuleBase:RU363003}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Serine biosynthesis {ECO:0000256|RuleBase:RU363003}. FT DOMAIN 453 524 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 524 AA; 57905 MW; 3FB5B6C576421AC1 CRC64; MYQVAICDPI HAKGIQILEA QKDIVLHDYS KCPKKELLEK LTPMDALITR SMTPITSDFL KPLTHLKSIV RAGVGVDNID LESCSQKGIV VMNIPTANTI AAVELTMAHL INAVRSFPCA NDQIKHQRLW KREDWYGTEL KNKKLGIIGF GNIGSRVGIR AKAFEMEVLA YDPYIPSSKA TDLGVIYTKN FEDILQCDMI TIHTPKNKET INMIGAKEIE RMKKGVILLN CARGGLYNED ALYEALETKK VRWLGIDVFS KEPGIHNKLL DLPNVYATPH IGANTLESQE EISKQAAQGV MESLRGSSHP HALNLPMQAF DASAKAYLNL AQKLGYFSSQ IHKGVCQKIE LSLCGEINQF KDALVAFMLV GVLKPVVGDK INYINAPFVA KERGIEIKVS LKESASPYKN MLSLTLNAAN GTISVSGTVF EEDILKLTEI DGFHIDIEPK GKMLLFRNTD IPGVIGSVGN AFARHGINIA DFRLGRNTQK EALALIIVDE EVSLEVLEEL KNIPACLSVH YVVI // ID O25214_HELPY Unreviewed; 495 AA. AC O25214; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07530.1}; GN OrderedLocusNames=HP_0468 {ECO:0000313|EMBL:AAD07530.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07530.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07530.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25852:HP_1262; NbExp=4; IntAct=EBI-7499615, EBI-7731253; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07530.1; -; Genomic_DNA. DR PIR; D64578; D64578. DR RefSeq; NP_207266.1; NC_000915.1. DR RefSeq; WP_000114695.1; NC_018939.1. DR ProteinModelPortal; O25214; -. DR DIP; DIP-3243N; -. DR IntAct; O25214; 14. DR MINT; MINT-184266; -. DR STRING; 85962.HP0468; -. DR PaxDb; O25214; -. DR DNASU; 899249; -. DR EnsemblBacteria; AAD07530; AAD07530; HP_0468. DR GeneID; 899249; -. DR KEGG; heo:C694_02400; -. DR KEGG; hpy:HP0468; -. DR PATRIC; 20592207; VBIHelPyl33062_0492. DR eggNOG; ENOG4105XBI; Bacteria. DR eggNOG; ENOG41124Q0; LUCA. DR OMA; NIDHEIY; -. DR OrthoDB; EOG65F8Q2; -. DR BioCyc; HPY:HP0468-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 495 AA; 57531 MW; 61D78298E8970345 CRC64; MSVLKLHVKV FRFETNKDYN PAYESYFLEY QEDQYLLDLL KQLKGVSYNE NIALKINQIA VFEDAKVSDL VAFFSKEWVL DPLSKRYALK DLMIDEKAVL KNYEDFFKQI PYITKGEKEE LEKFIQINFI NPQTNPKYLG DGFFLYVKWL MKRYPTERNR LLEMISQPES GVMNFLSVVH YLYKNDDNID HEIYELQEIL TNSKIKPWKD FSKNLLSLFQ YPSNSPKTPN PPKTCALFNA YAKHLDVQSL LKSAKLYLEK MGQKIIDLPF CYDGGYYGKI ISTHDFLTAS AYNLALAKAN GVSLIFCEED AYLNILHAKE VLDNNPEIIN SVNEKLKKYQ LVYEKGVEVV YLNEWVNEFL AWELKSPFDA FLGAEFSRIK RSDHFFNKIH LKAPHFLESF QNYAPLLEVN EVSGLLQCAH LRYLGIDLGA DFLIVHSLGL FHAFENLSLK ASKVYKRDND NTPTLFLPQI ALMAMGEKNT QALGLDAHYH KVTFI // ID O25264_HELPY Unreviewed; 535 AA. AC O25264; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Cag pathogenicity island protein (Cag9) {ECO:0000313|EMBL:AAD07596.1}; GN OrderedLocusNames=HP_0529 {ECO:0000313|EMBL:AAD07596.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07596.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07596.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07596.1; -; Genomic_DNA. DR PIR; A64586; A64586. DR RefSeq; NP_207325.1; NC_000915.1. DR RefSeq; WP_000481884.1; NC_018939.1. DR ProteinModelPortal; O25264; -. DR STRING; 85962.HP0529; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25264; -. DR EnsemblBacteria; AAD07596; AAD07596; HP_0529. DR GeneID; 898745; -. DR KEGG; heo:C694_02730; -. DR KEGG; hpy:HP0529; -. DR PATRIC; 20592333; VBIHelPyl33062_0555. DR KO; K12094; -. DR OMA; SFIAYAG; -. DR OrthoDB; EOG6TTVJG; -. DR BioCyc; HPY:HP0529-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 251 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 289 312 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 318 344 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 365 385 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 397 419 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 426 454 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 535 AA; 57737 MW; 2907597681E4D088 CRC64; MFNIKRNFLI TIISFFLIVP NWLKAIDLPI VSNLKIYQTV YCMLIPSYVL TNKSFADILT GYTSIGASGS GKSSGQGVIE ALSTPLATSL AASNLVKYLN TLGPLWGSAW ASVATAIQGF ALTPSSGCNF GWNALINKNI DVSMDSVLDN LSNKIQNFTK GGVEDNVKGN ILLQIIGSIT AQASTNITAD GLIWLIGKEF TANKLQNNTT AMLAFAALES VVKGADAAVL PAYGVVNLPD IIIGQGSYLD FVSYLIYIVF GIFVFISFMK LRDISSNIQI NIGFEYMRFV GGTLFKMAMV SFIAYAGFGY LYKISYSIYF GLAGAFGLNQ VLFWALDLVL NYTVNSILPA VRAVFSNVGN NAPSLLQGLQ VAGISLFAIF MQVTIIMRIS TVVVKPLIAG AFSGIVFPIA VSLIVLDWFK DSMKNILIWF INNLFILVLA IPILLFGVLA LLAFNLTITP SVAIQNINQG GLGIDSTIAS LITLFILKGF IETIIESVNA IVNTIFSSVS MDGSRMDRER DALMVGRVGG SMFKG // ID O25444_HELPY Unreviewed; 223 AA. AC O25444; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 118. DE SubName: Full=Cell division protein (FtsE) {ECO:0000313|EMBL:AAD07797.1}; GN OrderedLocusNames=HP_0748 {ECO:0000313|EMBL:AAD07797.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07797.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07797.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07797.1; -; Genomic_DNA. DR PIR; D64613; D64613. DR RefSeq; NP_207541.1; NC_000915.1. DR RefSeq; WP_000111062.1; NC_018939.1. DR ProteinModelPortal; O25444; -. DR DIP; DIP-3498N; -. DR IntAct; O25444; 5. DR MINT; MINT-167857; -. DR STRING; 85962.HP0748; -. DR PaxDb; O25444; -. DR EnsemblBacteria; AAD07797; AAD07797; HP_0748. DR GeneID; 898976; -. DR KEGG; heo:C694_03850; -. DR KEGG; hpy:HP0748; -. DR PATRIC; 20592785; VBIHelPyl33062_0781. DR eggNOG; ENOG4108HRE; Bacteria. DR eggNOG; COG1136; LUCA. DR KO; K09812; -. DR OMA; KLPMIIC; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0748-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Cell cycle {ECO:0000313|EMBL:AAD07797.1}; KW Cell division {ECO:0000313|EMBL:AAD07797.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 223 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 223 AA; 25402 MW; CC1544D07197336B CRC64; MSVIIAANNL CLQYQQNEPV IKHANLRIKR KDFVFISGPS GSGKSTLLRS FYGDLKLFSG KLEVCNINMN NASKATILDL RKNIGVVFQD YKLIQDYTIE QNIKLPMVIC GIKKEECHLQ LEKLLGHIDL RHKANRYPKE LSGGEQQRVA MARAMANCPE LILADEPTGN LDDYSSDKIW SLLRGMNTQL NATIVVVTHK FPKNFSAYHR KFYIEDGEVY EYS // ID O26083_HELPY Unreviewed; 333 AA. AC O26083; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Iron(III) ABC transporter, periplasmic iron-binding protein (CeuE) {ECO:0000313|EMBL:AAD08602.1}; GN OrderedLocusNames=HP_1562 {ECO:0000313|EMBL:AAD08602.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08602.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08602.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains Fe/B12 periplasmic-binding domain. CC {ECO:0000256|SAAS:SAAS00514624}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08602.1; -; Genomic_DNA. DR PIR; B64715; B64715. DR RefSeq; NP_208353.1; NC_000915.1. DR RefSeq; WP_000961773.1; NC_018939.1. DR ProteinModelPortal; O26083; -. DR IntAct; O26083; 11. DR STRING; 85962.HP1562; -. DR PaxDb; O26083; -. DR EnsemblBacteria; AAD08602; AAD08602; HP_1562. DR GeneID; 899729; -. DR KEGG; heo:C694_08095; -. DR KEGG; hpy:HP1562; -. DR PATRIC; 20594551; VBIHelPyl33062_1643. DR eggNOG; COG0614; LUCA. DR KO; K02016; -. DR OMA; AEVPAMF; -. DR OrthoDB; EOG6B626R; -. DR BioCyc; HPY:HP1562-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002491; ABC_transptr_periplasmic_BD. DR Pfam; PF01497; Peripla_BP_2; 1. DR PROSITE; PS50983; FE_B12_PBP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 29 {ECO:0000256|SAM:SignalP}. FT CHAIN 30 333 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157830. FT DOMAIN 50 307 Fe/B12 periplasmic-binding. FT {ECO:0000259|PROSITE:PS50983}. SQ SEQUENCE 333 AA; 37102 MW; 35B9934BD47770C2 CRC64; MLVTRFKKAL ISYSLGALLV SSLLGVASAS NQEIQVKDYF GDQAIKLPVS KIIYLGSFAE VPAMFHTWDR VVGISDYAFK SDIVKATLKD PKRIKSMSSD HVAALNVELL KKLGPDLVVT FVGNPKAVEH AKKFGILFLS FQEKTIAEVM EDIDAQAKAL EIDASKKLAK MQETLDFIAE RLKGVKKKKG VELFHKANKI SGHQALDSDI LEKGGIDNFG LKYVKFGRAD ISVEKIVKEN PEIIFIWWIS PLTPEDVLNN PKFATIKAIK NKQVYKLPTM DIGGPRAPLI SLFIALKAHP EAFKGVDINA IVKDYYKVVF DLNDAEVEPF LWH // ID O25777_HELPY Unreviewed; 204 AA. AC O25777; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08208.1}; GN OrderedLocusNames=HP_1162 {ECO:0000313|EMBL:AAD08208.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08208.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08208.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08208.1; -; Genomic_DNA. DR PIR; B64665; B64665. DR RefSeq; NP_207953.1; NC_000915.1. DR RefSeq; WP_010875600.1; NC_000915.1. DR ProteinModelPortal; O25777; -. DR STRING; 85962.HP1162; -. DR PaxDb; O25777; -. DR PRIDE; O25777; -. DR EnsemblBacteria; AAD08208; AAD08208; HP_1162. DR GeneID; 899922; -. DR KEGG; hpy:HP1162; -. DR PATRIC; 20593675; VBIHelPyl33062_1216. DR eggNOG; ENOG4108X2Q; Bacteria. DR eggNOG; COG0586; LUCA. DR OMA; KFLWLNV; -. DR OrthoDB; EOG6358BJ; -. DR BioCyc; HPY:HP1162-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032818; DedA. DR InterPro; IPR032816; SNARE_assoc. DR PANTHER; PTHR30353; PTHR30353; 1. DR Pfam; PF09335; SNARE_assoc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 161 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 173 195 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 204 AA; 23778 MW; 9712F596E48A7E43 CRC64; MKIKTNQKRV FMQEALLRFQ EGFKEWGYLI LFLYSLGGGY VGIVIASILS ATTHALDIKI TIFVAFLGNM VGSGALVVFA RYQKRDFLQY FHKHRRKLAL ASLWVKRYAL LMIFVNKYLY GIKSVVPLAV GFSKYPLKKF LWLNVFSSFL WALIVGSVSF QASDWVKTLY ERLSHYTSFF IISFVLIALL IWFLLKRYSR KMGF // ID O25048_HELPY Unreviewed; 162 AA. AC O25048; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07345.1}; GN OrderedLocusNames=HP_0270 {ECO:0000313|EMBL:AAD07345.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07345.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07345.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07345.1; -; Genomic_DNA. DR PIR; F64553; F64553. DR ProteinModelPortal; O25048; -. DR STRING; 85962.HP0270; -. DR PaxDb; O25048; -. DR PRIDE; O25048; -. DR EnsemblBacteria; AAD07345; AAD07345; HP_0270. DR PATRIC; 20591767; VBIHelPyl33062_0281. DR eggNOG; ENOG4105KB8; Bacteria. DR eggNOG; COG2121; LUCA. DR OMA; RVERINT; -. DR OrthoDB; EOG6JB130; -. DR BioCyc; HPY:HP0270-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007172; DUF374. DR Pfam; PF04028; DUF374; 1. DR ProDom; PD032436; DUF374; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 75 DUF374. {ECO:0000259|Pfam:PF04028}. SQ SEQUENCE 162 AA; 17945 MW; 7677716C3783E044 CRC64; MIGFAYLRLQ KPSVYVIASQ HFDGSIAAGL FESFGFKNIR GSSKKGGVKV LIEGLKRLKE GCDVAITPDG PKGPRHSIAD GVIALAQKSG VGISACRVVC KNAWRLNTWD QFEIPKPFSE VYYYMLESVI IPKEWELSRA KEYLKTRMDS VGFEEPQRGL GA // ID O25939_HELPY Unreviewed; 60 AA. AC O25939; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08437.1}; GN OrderedLocusNames=HP_1389 {ECO:0000313|EMBL:AAD08437.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08437.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08437.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08437.1; -; Genomic_DNA. DR PIR; E64693; E64693. DR RefSeq; NP_208180.1; NC_000915.1. DR RefSeq; WP_010875619.1; NC_000915.1. DR ProteinModelPortal; O25939; -. DR IntAct; O25939; 6. DR STRING; 85962.HP1389; -. DR PaxDb; O25939; -. DR PRIDE; O25939; -. DR EnsemblBacteria; AAD08437; AAD08437; HP_1389. DR GeneID; 900290; -. DR KEGG; hpy:HP1389; -. DR OrthoDB; EOG66F094; -. DR BioCyc; HPY:HP1389-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 60 AA; 7120 MW; B101EC1D906DEF24 CRC64; MMTEETYEAY LDTNIKQLEE VRNQKLNKAL ELCKQSGLFL RKFDGKNFSF ECDEPNRSKP // ID O25241_HELPY Unreviewed; 355 AA. AC O25241; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Phospholipase A1 (DR-phospholipase A) {ECO:0000313|EMBL:AAD07564.1}; GN OrderedLocusNames=HP_0499 {ECO:0000313|EMBL:AAD07564.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07564.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07564.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07564.1; -; Genomic_DNA. DR PIR; C64582; C64582. DR RefSeq; NP_207296.1; NC_000915.1. DR RefSeq; WP_000836138.1; NC_000915.1. DR ProteinModelPortal; O25241; -. DR STRING; 85962.HP0499; -. DR PaxDb; O25241; -. DR PRIDE; O25241; -. DR DNASU; 898759; -. DR EnsemblBacteria; AAD07564; AAD07564; HP_0499. DR GeneID; 898759; -. DR KEGG; hpy:HP0499; -. DR PATRIC; 20592273; VBIHelPyl33062_0525. DR eggNOG; ENOG4105HDD; Bacteria. DR eggNOG; COG2829; LUCA. DR KO; K01058; -. DR OMA; WGGCRSV; -. DR OrthoDB; EOG6HQSN6; -. DR BioCyc; HPY:HP0499-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004620; F:phospholipase activity; IEA:InterPro. DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro. DR Gene3D; 2.40.230.10; -; 2. DR InterPro; IPR003187; PLipase_A1. DR Pfam; PF02253; PLA1; 2. DR PRINTS; PR01486; PHPHLIPASEA1. DR SUPFAM; SSF56931; SSF56931; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 355 AA; 42487 MW; 461960F15E65AB0A CRC64; MKSILLFMIF VVCQLEGKKF SQDNFKVDYN YYLRKQDLHI IKTQNDLSNS WYLPPQKAPK EHSWVDFAKK YLNMMDYLGT YFLPFYHSFT PIFQWYHPNI NPYQRNEFKF QISFRVPVFR HILWTKGTLY LAYTQTDWFQ IYNDPQSAPM RMMNFMPELI YVYPINFKPF GGKIGNFSEI WIGWQHISNG VGGAQCYQPF NKEGNPENQF PGQPVIVKDY NGQKDVRWGG CRSVSAGQRP VFRLVWEKGG LKIMVAYWPY VPYDQSNPNL IDYMGYGNAK IDYRRGRHHF ELQLYDIFTQ YWRYDRWHGA FRLGYTYRIN PFVGIYAQWF NGYGDGLYEY DVFSNRIGVG IRLNP // ID O25168_HELPY Unreviewed; 32 AA. AC O25168; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07491.1}; GN OrderedLocusNames=HP_0412 {ECO:0000313|EMBL:AAD07491.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07491.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07491.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07491.1; -; Genomic_DNA. DR PIR; D64571; D64571. DR RefSeq; WP_000377645.1; NC_018939.1. DR ProteinModelPortal; O25168; -. DR STRING; 85962.HP0412; -. DR PaxDb; O25168; -. DR EnsemblBacteria; AAD07491; AAD07491; HP_0412. DR PATRIC; 20592073; VBIHelPyl33062_0426. DR BioCyc; HPY:HP0412-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 29 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 32 AA; 3791 MW; CC2AA3A3D0C7D8A4 CRC64; MDSLEWGLLI FLILVFLVGI GYYIFMVFFS KD // ID O25512_HELPY Unreviewed; 425 AA. AC O25512; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Pantothenate metabolism flavoprotein (Dfp) {ECO:0000313|EMBL:AAD07888.1}; GN OrderedLocusNames=HP_0841 {ECO:0000313|EMBL:AAD07888.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07888.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07888.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07888.1; -; Genomic_DNA. DR PIR; A64625; A64625. DR RefSeq; NP_207634.1; NC_000915.1. DR RefSeq; WP_001009984.1; NC_018939.1. DR ProteinModelPortal; O25512; -. DR DIP; DIP-3644N; -. DR IntAct; O25512; 4. DR MINT; MINT-174815; -. DR STRING; 85962.HP0841; -. DR PaxDb; O25512; -. DR EnsemblBacteria; AAD07888; AAD07888; HP_0841. DR GeneID; 899370; -. DR KEGG; heo:C694_04310; -. DR KEGG; hpy:HP0841; -. DR PATRIC; 20592975; VBIHelPyl33062_0875. DR eggNOG; ENOG4105CJS; Bacteria. DR eggNOG; COG0452; LUCA. DR KO; K13038; -. DR OMA; LAPSMNT; -. DR OrthoDB; EOG6FFSBB; -. DR BioCyc; HPY:HP0841-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004632; F:phosphopantothenate--cysteine ligase activity; IEA:InterPro. DR GO; GO:0004633; F:phosphopantothenoylcysteine decarboxylase activity; IEA:InterPro. DR GO; GO:0015937; P:coenzyme A biosynthetic process; IEA:InterPro. DR GO; GO:0015941; P:pantothenate catabolic process; IEA:InterPro. DR Gene3D; 3.40.50.10300; -; 1. DR Gene3D; 3.40.50.1950; -; 1. DR InterPro; IPR005252; CoaBC. DR InterPro; IPR007085; DNA/pantothenate-metab_flavo_C. DR InterPro; IPR003382; Flavoprotein. DR Pfam; PF04127; DFP; 1. DR Pfam; PF02441; Flavoprotein; 1. DR SUPFAM; SSF102645; SSF102645; 1. DR SUPFAM; SSF52507; SSF52507; 1. DR TIGRFAMs; TIGR00521; coaBC_dfp; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 17 150 Flavoprotein. {ECO:0000259|Pfam:PF02441}. FT DOMAIN 203 396 DFP. {ECO:0000259|Pfam:PF04127}. SQ SEQUENCE 425 AA; 46932 MW; DD1F52455B362616 CRC64; MNFLEDLFYP LRLLENKRVL LLVSGSIAAY KSLELVRLLF KSGASIQVVM SKGAKKFIKP LSFEALSHHK VLHDRNEKWY YNHQNALHHN HIACAANADL LIFAPLSTNS LSKIAHALAD NIVSATFLAC ASPKILAPSM NTNMLNSPIT QSNLKRLKDS NHIILDTKNA LLACDTKGDG AMAEPLEILF KAAQTLLKDA YFENREVIVM GGASIEKIDS VRTISNLSSG IQASALALAL YFKGAKVTLI ASNFPTPLPK EITSVLVSDT ASYENALNSA ANNLQKHALK PLLFNLAAIS DYVPKTSFNY KLKKSEIGET LNIECVQNKD LLVSINPNQF VKIGFKAEDN QQNAIKNAQN LLKPFKDNGK DCSVVALNLI KDSRPFGSLE NELWLFSHHK TQKIPSMNKL EASFKILDFI KDNAL // ID O25363_HELPY Unreviewed; 273 AA. AC O25363; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE RecName: Full=UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; DE EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259}; DE AltName: Full=UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; GN OrderedLocusNames=HP_0646 {ECO:0000313|EMBL:AAD07707.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07707.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07707.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3JUJ, ECO:0000213|PDB:3JUK} RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS). RX PubMed=20238176; DOI=10.1007/s10059-010-0047-6; RA Kim H., Choi J., Kim T., Lokanath N.K., Ha S.C., Suh S.W., Hwang H.Y., RA Kim K.K.; RT "Structural basis for the reaction mechanism of UDP-glucose RT pyrophosphorylase."; RL Mol. Cells 29:397-405(2010). CC -!- CATALYTIC ACTIVITY: UTP + alpha-D-glucose 1-phosphate = CC diphosphate + UDP-glucose. {ECO:0000256|RuleBase:RU361259}. CC -!- SIMILARITY: Belongs to the UDPGP type 2 family. CC {ECO:0000256|RuleBase:RU361259}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07707.1; -; Genomic_DNA. DR PIR; F64600; F64600. DR RefSeq; NP_207440.1; NC_000915.1. DR RefSeq; WP_000591482.1; NC_018939.1. DR PDB; 3JUJ; X-ray; 2.90 A; A/B/C/D=1-273. DR PDB; 3JUK; X-ray; 2.30 A; A/B/C/D=1-273. DR PDBsum; 3JUJ; -. DR PDBsum; 3JUK; -. DR ProteinModelPortal; O25363; -. DR IntAct; O25363; 2. DR STRING; 85962.HP0646; -. DR PaxDb; O25363; -. DR EnsemblBacteria; AAD07707; AAD07707; HP_0646. DR GeneID; 899301; -. DR KEGG; heo:C694_03340; -. DR KEGG; hpy:HP0646; -. DR PATRIC; 20592577; VBIHelPyl33062_0677. DR eggNOG; ENOG4105C3Y; Bacteria. DR eggNOG; COG1210; LUCA. DR KO; K00963; -. DR OMA; CISHDYP; -. DR OrthoDB; EOG6Z9B3V; -. DR BioCyc; HPY:HP0646-MONOMER; -. DR BRENDA; 2.7.7.9; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003983; F:UTP:glucose-1-phosphate uridylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR GO; GO:0006011; P:UDP-glucose metabolic process; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR005771; GalU_uridylyltTrfase_bac/arc. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR01099; galU; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3JUJ, ECO:0000213|PDB:3JUK}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU361259}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU361259}. FT DOMAIN 9 269 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. SQ SEQUENCE 273 AA; 30976 MW; 18CBB9843DE931EC CRC64; MIKKCLFPAA GYGTRFLPIT KTIPKEMLPI VDKPLIQYAV EEAMEAGCEV MAIVTGRNKR SLEDYFDTSY EIEHQIQGTN KENALKSIRN IIEKCCFSYV RQKQMKGLGH AILTGEALIG NEPFAVILAD DLCISHDHPS VLKQMTSLYQ KYQCSIVAIE EVALEEVSKY GVIRGEWLEE GVYEIKDMVE KPNQEDAPSN LAVIGRYILT PDIFEILSET KPGKNNEIQI TDALRTQAKR KRIIAYQFKG KRYDCGSVEG YIEASNAYYK KRL // ID O25460_HELPY Unreviewed; 102 AA. AC O25460; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07814.1}; GN OrderedLocusNames=HP_0765 {ECO:0000313|EMBL:AAD07814.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07814.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07814.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07814.1; -; Genomic_DNA. DR PIR; E64615; E64615. DR RefSeq; NP_207558.1; NC_000915.1. DR RefSeq; WP_000392451.1; NC_018939.1. DR ProteinModelPortal; O25460; -. DR DIP; DIP-3506N; -. DR IntAct; O25460; 5. DR MINT; MINT-161653; -. DR STRING; 85962.HP0765; -. DR PaxDb; O25460; -. DR PRIDE; O25460; -. DR DNASU; 899337; -. DR EnsemblBacteria; AAD07814; AAD07814; HP_0765. DR GeneID; 899337; -. DR KEGG; hpy:HP0765; -. DR PATRIC; 20592821; VBIHelPyl33062_0799. DR OMA; NQRDREK; -. DR OrthoDB; EOG6VXFF7; -. DR BioCyc; HPY:HP0765-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 102 AA; 11626 MW; 68DEACCAFD5C91A9 CRC64; MEEQKDMGQS VILTKVLESL ENGGSFNQRD REKFAQAART HGVEDSVIEE IIDIGQTLSL IYRHEYLIDA SDLSREQKKT AHAELQKSIN ENLEALRNII NI // ID O24932_HELPY Unreviewed; 186 AA. AC O24932; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07181.1}; GN OrderedLocusNames=HP_0108 {ECO:0000313|EMBL:AAD07181.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07181.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07181.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07181.1; -; Genomic_DNA. DR PIR; D64533; D64533. DR RefSeq; NP_206908.1; NC_000915.1. DR RefSeq; WP_010875442.1; NC_000915.1. DR ProteinModelPortal; O24932; -. DR DIP; DIP-3187N; -. DR IntAct; O24932; 2. DR MINT; MINT-166908; -. DR STRING; 85962.HP0108; -. DR PaxDb; O24932; -. DR PRIDE; O24932; -. DR EnsemblBacteria; AAD07181; AAD07181; HP_0108. DR GeneID; 899120; -. DR KEGG; hpy:HP0108; -. DR PATRIC; 20591431; VBIHelPyl33062_0115. DR OMA; IPKYGSC; -. DR OrthoDB; EOG6HMXFT; -. DR BioCyc; HPY:HP0108-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 186 AA; 21583 MW; 0B63F226B8ABAF14 CRC64; MPKLVKWNKF RIKCWFIKID QGAFMKTIEW NEEQRKAFQD LLREFTALID AKAQEEKQTG RTPKIPKYGS CQNGLNKFLA PWGYACKISP GSHGRLSYKP SIAFCRQDIL GEGFVNGEIP TPTKGFYIWL AYYWHNDAKK FHLCIGRSIE ENGEKECQKC LAYDKIIDPD GDAYYQESYD DLKSPS // ID O25819_HELPY Unreviewed; 228 AA. AC O25819; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=ABC transporter, ATP-binding protein (YhcG) {ECO:0000313|EMBL:AAD08262.1}; GN OrderedLocusNames=HP_1220 {ECO:0000313|EMBL:AAD08262.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08262.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08262.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08262.1; -; Genomic_DNA. DR PIR; D64672; D64672. DR RefSeq; NP_208012.1; NC_000915.1. DR RefSeq; WP_000959606.1; NC_018939.1. DR ProteinModelPortal; O25819; -. DR STRING; 85962.HP1220; -. DR PaxDb; O25819; -. DR EnsemblBacteria; AAD08262; AAD08262; HP_1220. DR GeneID; 898844; -. DR KEGG; heo:C694_06300; -. DR KEGG; hpy:HP1220; -. DR PATRIC; 20593811; VBIHelPyl33062_1276. DR eggNOG; ENOG4105HCP; Bacteria. DR eggNOG; COG1131; LUCA. DR KO; K01990; -. DR OMA; ERRECSI; -. DR OrthoDB; EOG6P5ZHH; -. DR BioCyc; HPY:HP1220-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD08262.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD08262.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 225 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 228 AA; 25352 MW; 0EA46B108AFE69A6 CRC64; MLVEIENLTK TYGSLKALDN INLKLPKQQF IGLLGPNGAG KTTLLKILAG LNLNYQGEVK ILNQKIGIET KKSVAFLSDG DFLDPKLTPL KAIAFYKDFF SDFDSSKALD LLKRFSVPLK REFKALSKGM REKLQLILTL SRNASLYLFD EPVAGIDPIA REEIFELIAK EFSQNASLLV STHLVVDVEK YLDSAIFLKE AKVVAFGGVG ELKKGYSSLE AAYKERLK // ID O25282_HELPY Unreviewed; 145 AA. AC O25282; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07631.1}; GN OrderedLocusNames=HP_0556 {ECO:0000313|EMBL:AAD07631.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07631.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07631.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07631.1; -; Genomic_DNA. DR PIR; D64589; D64589. DR RefSeq; NP_207351.1; NC_000915.1. DR RefSeq; WP_000256112.1; NC_018939.1. DR ProteinModelPortal; O25282; -. DR STRING; 85962.HP0556; -. DR PaxDb; O25282; -. DR EnsemblBacteria; AAD07631; AAD07631; HP_0556. DR GeneID; 899276; -. DR KEGG; heo:C694_02870; -. DR KEGG; hpy:HP0556; -. DR PATRIC; 20592387; VBIHelPyl33062_0582. DR OMA; FINWWAV; -. DR OrthoDB; EOG6QK4ST; -. DR BioCyc; HPY:HP0556-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 107 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 113 136 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 145 AA; 16613 MW; 79F78CD26B233991 CRC64; MVTHEKIKSR FSRNWSLRNR GRHFASASVY FFSLLVITAV NRSSAVAWLL MPEHLIGWFL ISFSGEFVAD MAFGKKSKIF KTRFGISIVS GVSLLLGALP AHLFFVWFGF INWWAVLFIE AGAGLLVGCV IQKIFFGKYW VDRYY // ID O25756_HELPY Unreviewed; 180 AA. AC O25756; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=ATP synthase F1, subunit delta (AtpH) {ECO:0000313|EMBL:AAD08177.1}; GN OrderedLocusNames=HP_1135 {ECO:0000313|EMBL:AAD08177.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08177.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08177.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08177.1; -; Genomic_DNA. DR PIR; G64661; G64661. DR RefSeq; NP_207926.1; NC_000915.1. DR RefSeq; WP_001153275.1; NC_018939.1. DR ProteinModelPortal; O25756; -. DR IntAct; O25756; 13. DR STRING; 85962.HP1135; -. DR PaxDb; O25756; -. DR EnsemblBacteria; AAD08177; AAD08177; HP_1135. DR GeneID; 899672; -. DR KEGG; heo:C694_05855; -. DR KEGG; hpy:HP1135; -. DR PATRIC; 20593615; VBIHelPyl33062_1187. DR eggNOG; COG0712; LUCA. DR KO; K02113; -. DR OMA; CSVLKPV; -. DR OrthoDB; EOG61P6R8; -. DR BioCyc; HPY:HP1135-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:InterPro. DR GO; GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro. DR Gene3D; 1.10.520.20; -; 1. DR InterPro; IPR026015; ATPase_OSCP/delta_N. DR InterPro; IPR000711; ATPase_OSCP/dsu. DR Pfam; PF00213; OSCP; 1. DR SUPFAM; SSF47928; SSF47928; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 180 AA; 20369 MW; 42FE9E37FCE87720 CRC64; MQDLKVISKH YAKALKNHTK SDLALLEEIV VGLKNATEAI RQHKLNQVLA HVSLKVKKEV VFEILEKITS IKACSVLKPV MEVVLKNNRL DMLELITEEL SFDSKRTLEA TLLVPEKLEN NELEAVQQKL QARFNAPVEI TQDTWSKKGV SLSVSSLDLE IGFSKEDILK KIEKQVIQSI // ID O26020_HELPY Unreviewed; 376 AA. AC O26020; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08521.1}; GN OrderedLocusNames=HP_1486 {ECO:0000313|EMBL:AAD08521.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08521.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08521.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08521.1; -; Genomic_DNA. DR PIR; F64705; F64705. DR RefSeq; NP_208277.1; NC_000915.1. DR RefSeq; WP_001008922.1; NC_018939.1. DR ProteinModelPortal; O26020; -. DR DIP; DIP-3144N; -. DR IntAct; O26020; 2. DR MINT; MINT-176507; -. DR STRING; 85962.HP1486; -. DR PaxDb; O26020; -. DR EnsemblBacteria; AAD08521; AAD08521; HP_1486. DR GeneID; 899806; -. DR KEGG; heo:C694_07695; -. DR KEGG; hpy:HP1486; -. DR PATRIC; 20594383; VBIHelPyl33062_1560. DR eggNOG; ENOG4108MUS; Bacteria. DR eggNOG; COG0842; LUCA. DR KO; K01992; -. DR OMA; FIFILHQ; -. DR OrthoDB; EOG600DKS; -. DR BioCyc; HPY:HP1486-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 181 205 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 226 250 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 256 278 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 308 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 346 364 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 376 AA; 42545 MW; 00E8B80738062CAC CRC64; MNFFKILLME LRAIVSHKGV LLILIGAPLI YGLLYPLPYL RDIVTQQKIA LVDEDNSFLS RQLAFMAQSS NELEIAFFSP SMLEAKKLLK EEKIYGILHI PSHFEANIHK QVPVTIDFYA NSNYFLIYGA LANAVVESIN ALNDEIRFKR NAQIEEAELG TDGIKIRPIA LYNPSEGYLN YALSSVFIFI LHQVMLIASS MFTSSRRLEL ALLDRKQIAL RLCTRLLVFM GAFSVFILWY FGALFSFYGI ERHGSALMVF LNSLIFMLAT LSLGSFLGAW IKNEAHTTQI VLISSLPLIF MMGFVWPFES LPSYLQVFVQ IVPAYHGISL LGRLNQMHAE FIDVSFHFYA LIAIFIASFI GSVFKLSSLK KACENA // ID O25958_HELPY Unreviewed; 394 AA. AC O25958; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08455.1}; GN OrderedLocusNames=HP_1410 {ECO:0000313|EMBL:AAD08455.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08455.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08455.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08455.1; -; Genomic_DNA. DR PIR; B64696; B64696. DR RefSeq; NP_208201.1; NC_000915.1. DR RefSeq; WP_010875624.1; NC_018939.1. DR ProteinModelPortal; O25958; -. DR DIP; DIP-3398N; -. DR IntAct; O25958; 1. DR MINT; MINT-167782; -. DR STRING; 85962.HP1410; -. DR PaxDb; O25958; -. DR EnsemblBacteria; AAD08455; AAD08455; HP_1410. DR GeneID; 899884; -. DR KEGG; heo:C694_07290; -. DR KEGG; hpy:HP1410; -. DR PATRIC; 20594217; VBIHelPyl33062_1478. DR eggNOG; COG0608; LUCA. DR OMA; KTIPFNT; -. DR BioCyc; HPY:HP1410-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 394 AA; 45102 MW; 31443C2BBBA2B0EC CRC64; MPKKELLKMS KKRIFKDFLK EAKQHRPIVF YTDNDCDGML AGSVLMSMCY RLGIKDFFFF SPLRNAHGYG FTDLALNDLL SQPCIFNPKT NQLVRLDCIK NQFQKNPLLF SADLGADLAA NTELQEILLE HFEQCIITDH HKSFEVDWID ENKIAYINLN DEKDANYYSG AFTSALVFSQ IFQTQTTPLE EELIAITLLS DRIDLDHGDN LDMVLSLAQA KHERIKCFFK DKDLSLAQDD LDEISNLYGF NCINYINALS RLSGAREFKG CYDSYLHYLV LKHFNPINXP RLSVFNVKEF KXYNDXKKKM VKESEENAQI FPCNKILVAL LDESCSTKVG VSGLVANNFL KKYPSNRSLC IYRDNKDGYS GSARGGGNFL SQIKTIPFNT SWRA // ID O25155_HELPY Unreviewed; 252 AA. AC O25155; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07466.1}; GN OrderedLocusNames=HP_0394 {ECO:0000313|EMBL:AAD07466.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07466.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07466.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07466.1; -; Genomic_DNA. DR PIR; B64569; B64569. DR RefSeq; NP_207192.1; NC_000915.1. DR RefSeq; WP_000894935.1; NC_018939.1. DR ProteinModelPortal; O25155; -. DR DIP; DIP-3598N; -. DR IntAct; O25155; 1. DR MINT; MINT-180459; -. DR STRING; 85962.HP0394; -. DR PaxDb; O25155; -. DR EnsemblBacteria; AAD07466; AAD07466; HP_0394. DR GeneID; 899226; -. DR KEGG; heo:C694_02000; -. DR KEGG; hpy:HP0394; -. DR PATRIC; 20592027; VBIHelPyl33062_0407. DR eggNOG; ENOG4108X98; Bacteria. DR eggNOG; COG2908; LUCA. DR KO; K03269; -. DR OMA; TSTWARF; -. DR OrthoDB; EOG622PN3; -. DR BioCyc; HPY:HP0394-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.60.21.10; -; 2. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR Pfam; PF00149; Metallophos; 1. DR SUPFAM; SSF56300; SSF56300; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 12 210 Metallophos. {ECO:0000259|Pfam:PF00149}. SQ SEQUENCE 252 AA; 29506 MW; 79E524B22DF2FE96 CRC64; MLETYALKNG AVFISDAHFL PKSPHLIHTL KELLSAKPPQ VFFMGDIFHV LVGYLPLDKE QQKIIDLIHA LSEISQVFYF EGNHDFSMRF VFNSKVMVFE RQNQPVLFQY DNKRFLLAHG DLFITKAYEF YITQLTSTWA RFFLTFLNLL SFKTLYPLFK KLIYQKPVRL WELEPKELQS FIEKRLKAYQ NYIKDLNIGS IDGIIEGHFH LKSGAKIPLN TPIYCPLPSF YYEQSLFKVS SSVLEPSQNK DA // ID O25552_HELPY Unreviewed; 90 AA. AC O25552; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07941.1}; GN OrderedLocusNames=HP_0892 {ECO:0000313|EMBL:AAD07941.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07941.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07941.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2OTR} RP STRUCTURE BY NMR. RX PubMed=17957768; DOI=10.1002/prot.21701; RA Han K.D., Park S.J., Jang S.B., Lee B.J.; RT "Solution structure of conserved hypothetical protein HP0892 from RT Helicobacter pylori."; RL Proteins 70:599-602(2008). RN [3] {ECO:0000213|PDB:4NRN} RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH ZINC. RX PubMed=24677509; DOI=10.1002/pro.2465; RA Im H., Jang S.B., Pathak C., Yang Y.J., Yoon H.J., Yu T.K., Suh J.Y., RA Lee B.J.; RT "Crystal structure of toxin HP0892 from Helicobacter pylori with two RT Zn(II) at 1.8 A resolution."; RL Protein Sci. 23:819-832(2014). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07941.1; -; Genomic_DNA. DR PIR; D64631; D64631. DR RefSeq; NP_207685.1; NC_000915.1. DR RefSeq; WP_000955518.1; NC_018939.1. DR PDB; 2OTR; NMR; -; A=1-90. DR PDB; 4NRN; X-ray; 1.80 A; A/B=1-90. DR PDBsum; 2OTR; -. DR PDBsum; 4NRN; -. DR ProteinModelPortal; O25552; -. DR SMR; O25552; 1-90. DR IntAct; O25552; 1. DR STRING; 85962.HP0892; -. DR PaxDb; O25552; -. DR EnsemblBacteria; AAD07941; AAD07941; HP_0892. DR GeneID; 899420; -. DR KEGG; heo:C694_04580; -. DR KEGG; hpy:HP0892; -. DR PATRIC; 20593073; VBIHelPyl33062_0924. DR eggNOG; ENOG4105VXN; Bacteria. DR eggNOG; COG3041; LUCA. DR OMA; NDHRECH; -. DR OrthoDB; EOG68Q0X7; -. DR BioCyc; HPY:HP0892-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR007712; RelE/ParE_toxin. DR InterPro; IPR004386; Toxin_YafQ-like. DR Pfam; PF15738; YafQ_toxin; 1. DR PIRSF; PIRSF006156; YafQ; 1. DR TIGRFAMs; TIGR02385; RelE_StbE; 1. DR TIGRFAMs; TIGR00053; TIGR00053; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2OTR, ECO:0000213|PDB:4NRN}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000213|PDB:4NRN}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Zinc {ECO:0000213|PDB:4NRN}. FT METAL 47 47 Zinc; via tele nitrogen. FT {ECO:0000213|PDB:4NRN}. FT METAL 58 58 Zinc. {ECO:0000213|PDB:4NRN}. FT METAL 60 60 Zinc; via tele nitrogen. FT {ECO:0000213|PDB:4NRN}. SQ SEQUENCE 90 AA; 10412 MW; ED5DF3A8263EDCF4 CRC64; MLTIETSKKF DKDLKILVKN GFDLKLLYKV VGNLATEQPL APKYKDHPLK GGLKDFRECH LKPDLLLVYQ IKKQENTLFL VRLGSHSELF // ID O25570_HELPY Unreviewed; 515 AA. AC O25570; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Outer membrane protein (Omp20) {ECO:0000313|EMBL:AAD07960.1}; GN OrderedLocusNames=HP_0912 {ECO:0000313|EMBL:AAD07960.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07960.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07960.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07960.1; -; Genomic_DNA. DR PIR; H64633; H64633. DR RefSeq; NP_207704.1; NC_000915.1. DR RefSeq; WP_000592437.1; NC_018939.1. DR ProteinModelPortal; O25570; -. DR STRING; 85962.HP0912; -. DR PaxDb; O25570; -. DR EnsemblBacteria; AAD07960; AAD07960; HP_0912. DR GeneID; 899441; -. DR KEGG; heo:C694_04695; -. DR KEGG; hpy:HP0912; -. DR PATRIC; 20593125; VBIHelPyl33062_0948. DR KO; K15843; -. DR OMA; YKSAGTT; -. DR OrthoDB; EOG6TJ7TR; -. DR BioCyc; HPY:HP0912-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 515 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157912. SQ SEQUENCE 515 AA; 55931 MW; E42109337FE2FAFB CRC64; MIKKNRTLFL SLALCASISY AEDDGGFFTV GYQLGQVMQD VQNPGGAKSD ELARELNADV TNNILNNNTG GNVAGALSNA FSQYLYSLLG AYPTKLNGND VSANALLSGA VGSGTCAAAG TAGGSTLNTQ SACTAAGYYW LPSLTDRILS TIGSQTNYGT NTNFPNMQQQ LTYLNAGNVF FNAMNKALEA KNGSSGASGA TGSDGQTYST QAIQYLQRQQ NILNNAANLL KQDELLLEAF NSAVAANIGN KEFNSAAFTG LVQGIIDQSQ LVYNELTKNT ISGSAVNGAE INSNQANAVQ GRASQLPNAL YNAQVTLDKI NALNNQVRSM PYLPQFRAGN SRSTNILNGF YTKIGYKQFF GKKRNIGLRY YGFFSYNGAS VGFRSTQNNV GLYTYGVGTD VLYNIFSRSY QNRSVDMGFF SGIQLAGETF QSTLRDDPNV KLHGKINNTH FQFLFDFGMR MNFGKLDGKS NRHNQHTVEF GVVVPTIYNT YYKSAGTTVK YFRPYSVYWS YGYSF // ID O25209_HELPY Unreviewed; 365 AA. AC O25209; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Type I restriction enzyme S protein (HsdS) {ECO:0000313|EMBL:AAD07524.1}; GN OrderedLocusNames=HP_0462 {ECO:0000313|EMBL:AAD07524.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07524.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07524.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07524.1; -; Genomic_DNA. DR PIR; F64577; F64577. DR RefSeq; NP_207260.1; NC_000915.1. DR RefSeq; WP_000005927.1; NC_018939.1. DR ProteinModelPortal; O25209; -. DR STRING; 85962.HP0462; -. DR REBASE; 56855; S.Hpy26695ORF2375P. DR PaxDb; O25209; -. DR EnsemblBacteria; AAD07524; AAD07524; HP_0462. DR GeneID; 898888; -. DR KEGG; heo:C694_02365; -. DR KEGG; hpy:HP0462; -. DR PATRIC; 20592193; VBIHelPyl33062_0485. DR eggNOG; ENOG4105EKX; Bacteria. DR eggNOG; COG0732; LUCA. DR KO; K01154; -. DR OMA; YRNIEEN; -. DR OrthoDB; EOG6CCH4M; -. DR BioCyc; HPY:HP0462-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 177 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 208 348 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 365 AA; 42056 MW; 4414DCB2985F3DE7 CRC64; MSEWQTFCLK DLGKIVGGAT PPTNNPKNYG NKISWITPKD LSTLQGRYIK KGSRSISRLG FKSCSCVLLP KHAILFSSRA PIGYVAIAEK RLCTNQGFKS IIPNKKIYFE FLYYLLKYHK NNFINMGEGT TIKGIYNIAL GLFKVKIPPT YYEQQKIART LSILDQKIEN NHKINELLHT LAYKIYEYYF KYKPKNAKLE QIIIENPKSN IMVKNAQKTQ DKYPFFTSGD NILSYPKAII DGRNCFLNTG GNAGIKFYVG KASYSTDTWC ICANEFSDYL YLLLSSIKNH INQSFFQGTS LKHLQKNLLK KYPIYMPSVH EIKKFNQIMM PLLTLISINT RTSKKLEQIR DFLLPLLLKQ QVKPQ // ID O25740_HELPY Unreviewed; 277 AA. AC O25740; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Outer membrane protein (Omp24) {ECO:0000313|EMBL:AAD08157.1}; GN OrderedLocusNames=HP_1113 {ECO:0000313|EMBL:AAD08157.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08157.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08157.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08157.1; -; Genomic_DNA. DR PIR; A64659; A64659. DR RefSeq; NP_207904.1; NC_000915.1. DR RefSeq; WP_000816949.1; NC_018939.1. DR ProteinModelPortal; O25740; -. DR STRING; 85962.HP1113; -. DR PaxDb; O25740; -. DR EnsemblBacteria; AAD08157; AAD08157; HP_1113. DR GeneID; 899649; -. DR KEGG; heo:C694_05740; -. DR KEGG; hpy:HP1113; -. DR PATRIC; 20593567; VBIHelPyl33062_1163. DR OMA; YSMNNIS; -. DR OrthoDB; EOG61040R; -. DR BioCyc; HPY:HP1113-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 277 AA; 31895 MW; 4428752A5AAA41C2 CRC64; MKRALYLILG LFYTLNAESF KDVLTKVDYT FFNKKVVSPI KRYADRSAFY LGLGYQLGSI QHNSSNLNLS QQFNKSQIIF SDSLSPVFKN SYVSNGLGVQ VGYKWVGKHE ETKWFGFRWG LFYDLSASLY GQKESQSVII STYGTYMDLL LNAYNGDKFF AGFNLGIAFA GVYDKVSDAL LYQALLLDTF GGKVDPNGFQ FLVNLGVRLG NKHNQFGFGI KIPTYYFNHY YSMNNISNNS EDVLKVLRFL EYGINSLLYQ VDFRRNYSVY FNYTYIF // ID O24936_HELPY Unreviewed; 628 AA. AC O24936; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07188.1}; GN OrderedLocusNames=HP_0114 {ECO:0000313|EMBL:AAD07188.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07188.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07188.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07188.1; -; Genomic_DNA. DR PIR; B64534; B64534. DR RefSeq; NP_206914.1; NC_000915.1. DR RefSeq; WP_000968780.1; NC_000915.1. DR ProteinModelPortal; O24936; -. DR STRING; 85962.HP0114; -. DR PaxDb; O24936; -. DR PRIDE; O24936; -. DR DNASU; 899122; -. DR EnsemblBacteria; AAD07188; AAD07188; HP_0114. DR GeneID; 899122; -. DR KEGG; hpy:HP0114; -. DR PATRIC; 20591443; VBIHelPyl33062_0121. DR eggNOG; COG2604; LUCA. DR OMA; FKRCVFI; -. DR OrthoDB; EOG6RFZSV; -. DR BioCyc; HPY:HP0114-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002826; MptE-like. DR Pfam; PF01973; MAF_flag10; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 516 560 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 628 AA; 72401 MW; 0CDBA3E27B881D43 CRC64; MMDIYQKNLQ ALFKKDPLLF AKLKAIKENK KYEVFLGNDS ANFNLLDKET NTPLFEKSPL DSSLELYKNS ENYMLYPYLY YFGLGNGVFY RLLLGNENLK RLVVIEPEIE IIFIVLNLLD FSTEILENRL ILLHASFCNY NMIASLFDMD KKSRLYARMY DLKLFNAYYE RYSHQIIGIN QHFTRALEHG AISVGNDAKD ALIGIKQHAA NLPEVIKSPS LVDFVSALKN RDTAIIVSTG PSLNKQLPLL KEIAPYATLF CIDASFPILA KAGIKPDIVL SLERVDLTAK FYEETPLDFQ EGVIFALTSI VHKRLIQAIK RGVKQFSFRP FGYTNLFDLH QYGYVGIGMS AANMAYELVV HSRFKRCVFI GQDLSFSQSG NSHASGAIYG DREIKPKKDK DKIFIEKYGG NGEVETTLVW KLFLEFFEKD IFNTPYKLEV INATEGGARI KGAKEMPFKE VCEKIDKSKP KPPINLIYPT QSEQAKNLKI ARQKCEEIIK YANEKKTQVE EVFLKVAEFL EEVEKLHEKN KLEELDFNKL ENLSAEIDNI KELFDDKRFN SYFMDAIQSY IFHQELHIAE IVCKKTNNED ELRAKQLEYI YVHKYWLFSL AGGIDCVIEA IKMALKEW // ID O25625_HELPY Unreviewed; 353 AA. AC O25625; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08028.1}; GN OrderedLocusNames=HP_0973 {ECO:0000313|EMBL:AAD08028.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08028.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08028.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08028.1; -; Genomic_DNA. DR PIR; E64641; E64641. DR RefSeq; NP_207764.1; NC_000915.1. DR RefSeq; WP_000682021.1; NC_018939.1. DR ProteinModelPortal; O25625; -. DR DIP; DIP-3290N; -. DR IntAct; O25625; 2. DR MINT; MINT-161337; -. DR STRING; 85962.HP0973; -. DR PaxDb; O25625; -. DR PRIDE; O25625; -. DR EnsemblBacteria; AAD08028; AAD08028; HP_0973. DR GeneID; 899505; -. DR KEGG; hpy:HP0973; -. DR PATRIC; 20593261; VBIHelPyl33062_1012. DR OMA; QFGSKEN; -. DR OrthoDB; EOG60W7RF; -. DR BioCyc; HPY:HP0973-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 28 {ECO:0000256|SAM:SignalP}. FT CHAIN 29 353 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157754. SQ SEQUENCE 353 AA; 39810 MW; E9323C53548B06D6 CRC64; MKHLTPLTHT IFKALWLGTA LSASLSLAAT ESPTKTEPKP AKGVKNKPKS PVTKVMMTNC DNIKDFNAKQ KEVLKAAYQF GSKENLGYEM AGIAWKESCA GVYKINFSDP SAGVYHSYIP SVLKSYGHND SPFLRNVMGE LLIKDDAFAS EVALKELLYW KTRYHDNLKD MIKSYNKGSR WERSEKSNAD AEKYYEEIQD RIRRLKESKI FDSQSSNDQE LQKSANSNLD LDPIGNAMPQ ALIAKETKIE ETQAEKSQEM KETTSEQTKS KPEKAKDKPM YLAQINSTDF TPVKKSPKKP AKVSQKHSFK NNIKNNVKNN AKTASKKQEM CKNCSPGQRN AILANHITLM QEL // ID O25745_HELPY Unreviewed; 144 AA. AC O25745; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08166.1}; GN OrderedLocusNames=HP_1120 {ECO:0000313|EMBL:AAD08166.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08166.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08166.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08166.1; -; Genomic_DNA. DR PIR; H64659; H64659. DR RefSeq; NP_207911.1; NC_000915.1. DR RefSeq; WP_000260859.1; NC_018939.1. DR ProteinModelPortal; O25745; -. DR DIP; DIP-3735N; -. DR IntAct; O25745; 1. DR MINT; MINT-166174; -. DR STRING; 85962.HP1120; -. DR PaxDb; O25745; -. DR EnsemblBacteria; AAD08166; AAD08166; HP_1120. DR GeneID; 899657; -. DR KEGG; heo:C694_05780; -. DR KEGG; hpy:HP1120; -. DR PATRIC; 20593583; VBIHelPyl33062_1171. DR eggNOG; ENOG4105KHW; Bacteria. DR eggNOG; ENOG4111U4A; LUCA. DR OMA; ANIDAQM; -. DR OrthoDB; EOG6JX7MX; -. DR BioCyc; HPY:HP1120-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 5 32 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 144 AA; 16945 MW; 4290C1C8603221DF CRC64; MVVLHSHLEN ALKQLKELID LTERDIRDIK LAKHTEIFER NHQKQLAIQA FEKEKANIDV QMLSLKNQFP DKEMSELLDE KTSDFLNQMR ESLFVLKEKN LIYSRMAFAV SEFYSSLIQQ IIPHDTCDYK GSRHVGSHFL RVQA // ID O25131_HELPY Unreviewed; 202 AA. AC O25131; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07436.1}; GN OrderedLocusNames=HP_0367 {ECO:0000313|EMBL:AAD07436.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07436.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07436.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07436.1; -; Genomic_DNA. DR PIR; G64565; G64565. DR RefSeq; NP_207165.1; NC_000915.1. DR RefSeq; WP_000036594.1; NC_018939.1. DR ProteinModelPortal; O25131; -. DR IntAct; O25131; 3. DR STRING; 85962.HP0367; -. DR PaxDb; O25131; -. DR EnsemblBacteria; AAD07436; AAD07436; HP_0367. DR GeneID; 900088; -. DR KEGG; heo:C694_01860; -. DR KEGG; hpy:HP0367; -. DR PATRIC; 20591969; VBIHelPyl33062_0378. DR OMA; HDTSKIT; -. DR OrthoDB; EOG62NX3X; -. DR BioCyc; HPY:HP0367-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 139 166 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 202 AA; 23211 MW; C71079731747C25D CRC64; MSKISNNYNP SLMVRDYHTQ RVGSHTKNGE KEENKEIQNL SENDEKIKLA KQAKQDNLAI GDLESRLKSL KGMDKDAKEL VGISKAYAHN NEKDRSDFEH FKSRLDKAID SFNQKSGNDN LKLPGNIDID DTKALEKFSK SLESEKENIQ NSLHQWKKQL AETNHLNKEY NTLDKTRLNA QKFQDVHDTS KITPSRLQDL LA // ID O25820_HELPY Unreviewed; 948 AA. AC O25820; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=D-lactate dehydrogenase (Dld) {ECO:0000313|EMBL:AAD08264.1}; GN OrderedLocusNames=HP_1222 {ECO:0000313|EMBL:AAD08264.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08264.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08264.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08264.1; -; Genomic_DNA. DR PIR; F64672; F64672. DR RefSeq; NP_208014.1; NC_000915.1. DR RefSeq; WP_001261912.1; NC_000915.1. DR ProteinModelPortal; O25820; -. DR DIP; DIP-3097N; -. DR IntAct; O25820; 4. DR MINT; MINT-186724; -. DR STRING; 85962.HP1222; -. DR PaxDb; O25820; -. DR PRIDE; O25820; -. DR EnsemblBacteria; AAD08264; AAD08264; HP_1222. DR GeneID; 898825; -. DR KEGG; hpy:HP1222; -. DR PATRIC; 20593815; VBIHelPyl33062_1278. DR eggNOG; ENOG4107RHJ; Bacteria. DR eggNOG; COG0247; LUCA. DR eggNOG; COG0277; LUCA. DR KO; K18930; -. DR OMA; GMCCGVE; -. DR OrthoDB; EOG625JT8; -. DR BioCyc; HPY:HP1222-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0016614; F:oxidoreductase activity, acting on CH-OH group of donors; IEA:InterPro. DR Gene3D; 3.30.43.10; -; 1. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR016167; FAD-bd_2_sub1. DR InterPro; IPR016164; FAD-linked_Oxase-like_C. DR InterPro; IPR004113; FAD-linked_oxidase_C. DR InterPro; IPR009051; Helical_ferredxn. DR InterPro; IPR006094; Oxid_FAD_bind_N. DR Pfam; PF02913; FAD-oxidase_C; 1. DR Pfam; PF01565; FAD_binding_4; 1. DR Pfam; PF12838; Fer4_7; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR SUPFAM; SSF55103; SSF55103; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 2. DR PROSITE; PS51379; 4FE4S_FER_2; 1. DR PROSITE; PS51387; FAD_PCMH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 39 267 FAD-binding PCMH-type. FT {ECO:0000259|PROSITE:PS51387}. FT DOMAIN 539 568 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 948 AA; 106278 MW; 9E90D04719E1FE2F CRC64; MRVEENYHAF FTEASGFLNE RIFKDYLRRL AYGIDASCYR YIPKIVAWVK NEEEVQKLCV LAKKHGVSLT FRAAGSSLSG QAICDGVLVM VTHFFKDAQI LDNAQSIQLS CGVIGSNANA LLKPYHKKIG PDPSTINTAM IGGIVANNAS GMCCGVEQNS YKTLKSLRVI LADGTLLDTA NQESVESFKN AHKDLIEGVL NLRKEILEDK ELHALIKKKY EIKNTTGYSL NALIDFEDPI EIISHLFIGS EGTLGFISSV ELECVKDYAY KTCALLFYEN LERCAKAAQI LAALKAKQPE MISSAELMDY ACLKSVKGLE GMPSVVLEIK EPNACLLIQS ESDDPLILEN SMQTILNALS AIPVVLDSQI SSDPSIYQSW WKIRKGIFPI AASKRKSQSS VIIEDICFSQ EDFVEGAKAI EGLLKKHGFK DNGIIFGHAL SGNLHFVVTP ILENEAERKA FENLVSEMFL MVSKSSGSIK AEHGTGRMVA PFVEMEWGEK AYKIHKQIKE LFDPNGILNP DVIITNDKEI HTKNLKSIYP IEEHLDMCME CGFCERICPS KDLSLTPRQR IVIHREVEHL KERVSHGHHE DQVLLDELLK ESEYLAHATC AVCHMCSTLC PLEIDTGKIA LNYYQKNPKG EKIASKILNH MQTTTSMARF SLKSARLVQN LIGSHNLVSL TKGIKKFIKP FPKAFYYMPK NNAYPLENKT LKSEEKVIYF STCINRSFAP SNKMADKRCI QEVFESLCQK AKVSVMYPNG LNALCCGKAF INYTDLTKQN NEKNHAIFLQ LSDKGKIPIV LDHSACSTHF FKQMKAYKDL KVYDLSVYIE EVLSPKLKFN PINEDIGLYT MCALKLENKE ELLFNLAKKC TLGEIVIHKE TGCCGFAGNK GFFTPELNES ALNGFQAFYQ SYDLKRGFST SSTCEIGLSE KTRFSWQHIA YLVDACTL // ID O25270_HELPY Unreviewed; 376 AA. AC O25270; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Cag pathogenicity island protein (Cag16) {ECO:0000313|EMBL:AAD07603.1}; GN OrderedLocusNames=HP_0537 {ECO:0000313|EMBL:AAD07603.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07603.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07603.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25041:HP_0261; NbExp=2; IntAct=EBI-527906, EBI-527892; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07603.1; -; Genomic_DNA. DR PIR; A64587; A64587. DR RefSeq; NP_207333.1; NC_000915.1. DR RefSeq; WP_000879904.1; NC_018939.1. DR ProteinModelPortal; O25270; -. DR DIP; DIP-3311N; -. DR IntAct; O25270; 8. DR MINT; MINT-179864; -. DR STRING; 85962.HP0537; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25270; -. DR EnsemblBacteria; AAD07603; AAD07603; HP_0537. DR GeneID; 900246; -. DR KEGG; heo:C694_02770; -. DR KEGG; hpy:HP0537; -. DR PATRIC; 20592345; VBIHelPyl33062_0561. DR KO; K12101; -. DR OMA; QVKNSNI; -. DR OrthoDB; EOG6ZKXNJ; -. DR BioCyc; HPY:HP0537-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 76 99 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 376 AA; 43762 MW; E9168A02CF9B9130 CRC64; MLAKIVFSSL VAFGVLSANV EQFGSFFNEI KKEQEEVAAK EDALKARKKL LNNTHDFLED LIFRKQKIKE LMDHRAKVLS DLENKYKKEK EALEKETRGK ILTAKSKAYG DLEQALKDNP LYRKLLPNPY AYVLNQETFT KEDRERLSYY YPQVKTSSIF KKTTATTKDK AQALLQMGVF SLDEEQNKKA SRLALSYKQA IEEYSNNVSN LLSRKELDNI DYYLQLERNK FDSKAKDIAQ KATNTLIFNS ERLAFSMAID KINEKYLRGY EAFSNLLKNV KDDVELNTLT KNFTNQKLSF AQKQKLCLLV LDSFNFDTQS KKSILKKTNE YNIFVDSDPM MSDKTTMQKE HYKIFNFFKT VVSAYRNNVA KNNPFE // ID O26058_HELPY Unreviewed; 180 AA. AC O26058; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Purine nucleoside phosphorylase (PunB) {ECO:0000313|EMBL:AAD08569.1}; GN OrderedLocusNames=HP_1530 {ECO:0000313|EMBL:AAD08569.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08569.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08569.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O34461:HP_0424; NbExp=4; IntAct=EBI-7629377, EBI-7506839; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08569.1; -; Genomic_DNA. DR PIR; B64711; B64711. DR RefSeq; NP_208320.1; NC_000915.1. DR RefSeq; WP_000923009.1; NC_018939.1. DR ProteinModelPortal; O26058; -. DR DIP; DIP-3727N; -. DR IntAct; O26058; 1. DR MINT; MINT-168810; -. DR STRING; 85962.HP1530; -. DR PaxDb; O26058; -. DR EnsemblBacteria; AAD08569; AAD08569; HP_1530. DR GeneID; 899760; -. DR KEGG; heo:C694_07925; -. DR KEGG; hpy:HP1530; -. DR PATRIC; 20594481; VBIHelPyl33062_1608. DR eggNOG; ENOG4105GQ4; Bacteria. DR eggNOG; ENOG4111KWF; LUCA. DR OMA; NSSNYIH; -. DR OrthoDB; EOG6CGCD8; -. DR BioCyc; HPY:HP1530-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1580; -; 1. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR SUPFAM; SSF53167; SSF53167; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 180 AA; 20200 MW; E98A87FADF025A8C CRC64; MLLCAGRNET LKKAVPIGVG LIESAINLTR MCLKNPDTES LIFIGSAGSY SPEMELLSVF ESVCGYQIEE SFSHLNSYTP LDNFIHIETE EQALFERVRV NSSNYIHTSE MFAKKMVQKG VLLENMEFFS VLSVAKAFSL KAKGIFCVSN YVGLNAYQEF KENHAKVKQI LENIIDSLII // ID O25387_HELPY Unreviewed; 168 AA. AC O25387; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Methylated-DNA--protein-cysteine methyltransferase (Dat1) {ECO:0000313|EMBL:AAD14881.1}; GN OrderedLocusNames=HP_0676 {ECO:0000313|EMBL:AAD14881.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14881.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14881.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14881.1; -; Genomic_DNA. DR PIR; D64604; D64604. DR RefSeq; NP_207470.1; NC_000915.1. DR RefSeq; WP_001862580.1; NC_018939.1. DR ProteinModelPortal; O25387; -. DR STRING; 85962.HP0676; -. DR PaxDb; O25387; -. DR EnsemblBacteria; AAD14881; AAD14881; HP_0676. DR GeneID; 900255; -. DR KEGG; heo:C694_03490; -. DR KEGG; hpy:HP0676; -. DR PATRIC; 20592637; VBIHelPyl33062_0707. DR eggNOG; ENOG4105K85; Bacteria. DR eggNOG; COG0350; LUCA. DR KO; K00567; -. DR OMA; INNPKSC; -. DR OrthoDB; EOG6DJZ5C; -. DR BioCyc; HPY:HP0676-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003908; F:methylated-DNA-[protein]-cysteine S-methyltransferase activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001497; MethylDNA_cys_MeTrfase_AS. DR InterPro; IPR014048; MethylDNA_cys_MeTrfase_DNA-bd. DR InterPro; IPR008332; MethylG_MeTrfase_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01035; DNA_binding_1; 1. DR Pfam; PF02870; Methyltransf_1N; 1. DR SUPFAM; SSF46767; SSF46767; 1. DR SUPFAM; SSF53155; SSF53155; 1. DR TIGRFAMs; TIGR00589; ogt; 1. DR PROSITE; PS00374; MGMT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD14881.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD14881.1}. FT DOMAIN 7 72 Methyltransf_1N. FT {ECO:0000259|Pfam:PF02870}. FT DOMAIN 77 154 DNA_binding_1. FT {ECO:0000259|Pfam:PF01035}. SQ SEQUENCE 168 AA; 19256 MW; 357F0A1D7AA66143 CRC64; MVLYHYYFKT PKSFPLEYLH LCANESHLLR LDFDAANFSH NTPMNTPLKL SVQALERYFL GQLFEFNTPL DLIGTFFQKQ VWSALMTIPY GKTKSYDEIA KLINNPRSCR AVGNANRNNP ISLIVPCHRV VRKNGTLGGY NGGIEVKKWL LEFESKILNQ QAKNSLIS // ID O25277_HELPY Unreviewed; 207 AA. AC O25277; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Cag pathogenicity island protein (Cag24) {ECO:0000313|EMBL:AAD07611.1}; GN OrderedLocusNames=HP_0545 {ECO:0000313|EMBL:AAD07611.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07611.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07611.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07611.1; -; Genomic_DNA. DR PIR; A64588; A64588. DR RefSeq; NP_207341.1; NC_000915.1. DR RefSeq; WP_000609477.1; NC_018939.1. DR ProteinModelPortal; O25277; -. DR IntAct; O25277; 1. DR STRING; 85962.HP0545; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25277; -. DR EnsemblBacteria; AAD07611; AAD07611; HP_0545. DR GeneID; 899273; -. DR KEGG; heo:C694_02810; -. DR KEGG; hpy:HP0545; -. DR PATRIC; 20592361; VBIHelPyl33062_0569. DR KO; K12109; -. DR OMA; RCFLSLR; -. DR OrthoDB; EOG69WFJX; -. DR BioCyc; HPY:HP0545-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032336; CagD. DR Pfam; PF16567; CagD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 30 {ECO:0000256|SAM:SignalP}. FT CHAIN 31 207 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158016. SQ SEQUENCE 207 AA; 24010 MW; 7B6411AE13FC1229 CRC64; MINNNSNKKL RGFFVKVLLS LVVFSSYGLA NDDKEAKKEV LEKEKNTPNG LVYTNLDFDS FKATIKNLKD KKVTFKEVNP DIIKDEVFDF VIVNRVLKKI KDLKHYDPVI EKIFDEKGKE MGLNVELQIN PEVKDFFTFK SISTTNKQRC FLSLRGETRE ILCDDKLYNV LLAVFNSYDP NDLLKHISTV ESLKKIFYTI TCEAVYL // ID O25246_HELPY Unreviewed; 154 AA. AC O25246; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07577.1}; GN OrderedLocusNames=HP_0505 {ECO:0000313|EMBL:AAD07577.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07577.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07577.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07577.1; -; Genomic_DNA. DR PIR; A64583; A64583. DR ProteinModelPortal; O25246; -. DR STRING; 85962.HP0505; -. DR REBASE; 17368; HpyAORF503P. DR PaxDb; O25246; -. DR EnsemblBacteria; AAD07577; AAD07577; HP_0505. DR KEGG; heo:C694_02595; -. DR PATRIC; 20592285; VBIHelPyl33062_0531. DR OrthoDB; EOG6P06WQ; -. DR BioCyc; HPY:HP0505-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR018576; Restrct_endonuc_II_Pab1. DR Pfam; PF09522; RE_R_Pab1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 34 151 RE_R_Pab1. {ECO:0000259|Pfam:PF09522}. SQ SEQUENCE 154 AA; 18043 MW; C58079D19F6C3283 CRC64; MIDYAKQLGL ISLENLENTL KYLKKQKQFI EDNFMITRER FRSHQFGGMD FELSRISYPL LIHSFDDNEL SEIVIREQQY GSKTQAMLYF CFSILELKTA TPLLNRTATL KEHAFLTIHK ANAPMFLEML KIFGLLSQAH HSDVLKILEK ILQN // ID O25382_HELPY Unreviewed; 270 AA. AC O25382; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Outer membrane protein (Omp14) {ECO:0000313|EMBL:AAD07732.1}; GN OrderedLocusNames=HP_0671 {ECO:0000313|EMBL:AAD07732.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07732.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07732.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07732.1; -; Genomic_DNA. DR PIR; G64603; G64603. DR RefSeq; NP_207465.1; NC_000915.1. DR RefSeq; WP_000715041.1; NC_018939.1. DR ProteinModelPortal; O25382; -. DR STRING; 85962.HP0671; -. DR PaxDb; O25382; -. DR EnsemblBacteria; AAD07732; AAD07732; HP_0671. DR GeneID; 898936; -. DR KEGG; heo:C694_03470; -. DR KEGG; hpy:HP0671; -. DR PATRIC; 20592627; VBIHelPyl33062_0702. DR OMA; PKDYKAV; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP0671-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 270 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157804. SQ SEQUENCE 270 AA; 30346 MW; 475BF29ACEA9C665 CRC64; MKKFVVFKTL CLSVVLGNSL VAAEGSTEVQ KQLEKPKEYK AVKGEKNAWY LGISYQVGQA SQSVKNPPKS SEFNYPKFPV GKTDYLAVMQ GLGLTVGYKQ FFGEKRWFGA RYYGFMDYGH AVFGANALTS DNGGVCELHQ PCATKVGTMG NLSDMFTYGV GIDTLYNVIN KEDASFGFFF GAQIAGNSWG NTTGAFLETK SPYKHTSYSL DPAIFQFLFN LGIRTHIGRH QEFDFGVKIP TINVYYFNHG NLSFTYRRQY SLYVGYRYNF // ID O25247_HELPY Unreviewed; 403 AA. AC O25247; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 92. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD07571.1}; GN OrderedLocusNames=HP_0506 {ECO:0000313|EMBL:AAD07571.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07571.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07571.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4RNY, ECO:0000213|PDB:4RNZ} RP X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) OF 42-403 IN COMPLEX WITH ZINC. RX PubMed=25760614; DOI=10.1107/S1399004715000152; RA An D.R., Kim H.S., Kim J., Im H.N., Yoon H.J., Yoon J.Y., Jang J.Y., RA Hesek D., Lee M., Mobashery S., Kim S.J., Lee B.I., Suh S.W.; RT "Structure of Csd3 from Helicobacter pylori, a cell shape-determining RT metallopeptidase."; RL Acta Crystallogr. D 71:675-686(2015). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07571.1; -; Genomic_DNA. DR PIR; B64583; B64583. DR RefSeq; NP_207303.1; NC_000915.1. DR RefSeq; WP_000231086.1; NC_018939.1. DR PDB; 4RNY; X-ray; 2.00 A; A/B=42-403. DR PDB; 4RNZ; X-ray; 1.98 A; A=42-403. DR PDBsum; 4RNY; -. DR PDBsum; 4RNZ; -. DR ProteinModelPortal; O25247; -. DR DIP; DIP-3505N; -. DR IntAct; O25247; 1. DR MINT; MINT-185972; -. DR STRING; 85962.HP0506; -. DR PaxDb; O25247; -. DR DNASU; 900053; -. DR EnsemblBacteria; AAD07571; AAD07571; HP_0506. DR GeneID; 900053; -. DR KEGG; heo:C694_02600; -. DR KEGG; hpy:HP0506; -. DR PATRIC; 20592287; VBIHelPyl33062_0532. DR eggNOG; ENOG4105DR5; Bacteria. DR eggNOG; COG0739; LUCA. DR OMA; YSLMVAF; -. DR OrthoDB; EOG61KBD1; -. DR BioCyc; HPY:HP0506-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR011055; Dup_hybrid_motif. DR InterPro; IPR016047; Peptidase_M23. DR Pfam; PF01551; Peptidase_M23; 1. DR SUPFAM; SSF51261; SSF51261; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4RNY, ECO:0000213|PDB:4RNZ}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000213|PDB:4RNY, ECO:0000213|PDB:4RNZ}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Zinc {ECO:0000213|PDB:4RNY, ECO:0000213|PDB:4RNZ}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 258 353 Peptidase_M23. FT {ECO:0000259|Pfam:PF01551}. FT COILED 369 393 {ECO:0000256|SAM:Coils}. FT METAL 74 74 Zinc. {ECO:0000213|PDB:4RNY, FT ECO:0000213|PDB:4RNZ}. FT METAL 259 259 Zinc; via tele nitrogen. FT {ECO:0000213|PDB:4RNY, FT ECO:0000213|PDB:4RNZ}. FT METAL 263 263 Zinc. {ECO:0000213|PDB:4RNY, FT ECO:0000213|PDB:4RNZ}. FT METAL 341 341 Zinc; via pros nitrogen. FT {ECO:0000213|PDB:4RNY, FT ECO:0000213|PDB:4RNZ}. SQ SEQUENCE 403 AA; 45971 MW; 51CDEF64CA094399 CRC64; MVFFHKKIIL NFIYSLMVAF LSHGVLLKAD GMAKKQTLLV GERLVWDKLT LLGFLEKNHI PQKLYYNLSS QDKELSAEIQ SNVTYYTLRD ANNTLIQALI PISQDLQIHI YKKGEDYFLD FIPIIFTRKE KTLLLSLQTS PYQDIIKATN DPLLANQLMN AYKKSVPFKR LVKNDKIAIV YTRDYRVGQA FGQPTIKMAM VSSRSNQYYL FSHSNGHYYD SKAQEVAGFL LETPVKYTRI SSPFSYGRFH PVLKVRRPHY GVDYAAKHGS LIHSASDGRV GFMGVKAGYG KVVEIHLNEL RLVYAHMSAF ANGLKKGSFV KKGQIIGRVG STGLSTGPHL HFGVYKNSRP INPLGYIRTA KSKLHGKQRE VFLEKAQRSK QKLEELLKTH SFEKNSFYLL EGF // ID O24934_HELPY Unreviewed; 231 AA. AC O24934; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07186.1}; GN OrderedLocusNames=HP_0112 {ECO:0000313|EMBL:AAD07186.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07186.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07186.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07186.1; -; Genomic_DNA. DR PIR; H64533; H64533. DR RefSeq; NP_206912.1; NC_000915.1. DR RefSeq; WP_000189510.1; NC_000915.1. DR ProteinModelPortal; O24934; -. DR DIP; DIP-3343N; -. DR IntAct; O24934; 1. DR MINT; MINT-163826; -. DR STRING; 85962.HP0112; -. DR PaxDb; O24934; -. DR PRIDE; O24934; -. DR EnsemblBacteria; AAD07186; AAD07186; HP_0112. DR GeneID; 898980; -. DR KEGG; hpy:HP0112; -. DR PATRIC; 20591439; VBIHelPyl33062_0119. DR eggNOG; ENOG4107YZS; Bacteria. DR eggNOG; COG0235; LUCA. DR KO; K01628; -. DR OMA; TNQFVIN; -. DR OrthoDB; EOG628F4M; -. DR BioCyc; HPY:HP0112-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.225.10; -; 1. DR InterPro; IPR001303; Aldolase_II/adducin_N. DR Pfam; PF00596; Aldolase_II; 1. DR SMART; SM01007; Aldolase_II; 1. DR SUPFAM; SSF53639; SSF53639; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 36 214 Aldolase_II. {ECO:0000259|SMART:SM01007}. SQ SEQUENCE 231 AA; 27143 MW; 3F6653897738C7B4 CRC64; MTQALYYFII YLLLKKLVIM INMNTHTRGI DSNLIHSLQS ISLSMFRKGF FGLYQGSISA RIGANQFVIN KRNAVFDQLN ENTLLVLHDK IDYRWKEASL DSPIHASVYR EFLDAKFIAY ARPPYSLAYS LRHNRLLPRD YLGYRSLGEE ISIFNPKDYD SWQERADTEI LRQLQESKKY FVFIKGCGIF AYHRELSKLM EVFDLIENSC KVLRLGDLMD YCYNDDPRLS V // ID O25154_HELPY Unreviewed; 311 AA. AC O25154; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 103. DE SubName: Full=Chemotaxis protein (CheV) {ECO:0000313|EMBL:AAD07458.1}; GN OrderedLocusNames=HP_0393 {ECO:0000313|EMBL:AAD07458.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07458.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07458.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07458.1; -; Genomic_DNA. DR PIR; A64569; A64569. DR RefSeq; NP_207191.1; NC_000915.1. DR RefSeq; WP_000818647.1; NC_018939.1. DR ProteinModelPortal; O25154; -. DR IntAct; O25154; 5. DR STRING; 85962.HP0393; -. DR PaxDb; O25154; -. DR EnsemblBacteria; AAD07458; AAD07458; HP_0393. DR GeneID; 899996; -. DR KEGG; heo:C694_01995; -. DR KEGG; hpy:HP0393; -. DR PATRIC; 20592025; VBIHelPyl33062_0406. DR eggNOG; ENOG4105D4E; Bacteria. DR eggNOG; COG0784; LUCA. DR eggNOG; COG0835; LUCA. DR KO; K03415; -. DR OMA; GGTIPIM; -. DR OrthoDB; EOG6716JW; -. DR BioCyc; HPY:HP0393-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR024181; Chemotax_regulator_CheV. DR InterPro; IPR002545; CheW. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF01584; CheW; 1. DR Pfam; PF00072; Response_reg; 1. DR PIRSF; PIRSF002867; CheV; 1. DR SMART; SM00260; CheW; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF50341; SSF50341; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50851; CHEW; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 164 CheW-like. {ECO:0000259|PROSITE:PS50851}. FT DOMAIN 182 308 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 311 AA; 35630 MW; 223A196E088FD718 CRC64; MAEKTANDLK LSEIELVDFR IYGMQEGVPY EGIYGINVAK VQEIIPMPTL FEYPTNLDYI IGVFDLRSII IPLIDLAKWI GIIPDKSKEN EKIVIITEFN NVKMGFLVHS ARRIRRISWK DVEPASFSAS NSINKENITG TTRIENDKTL LILDLESILD DLKLNEDAKN AKDTHKERFE GEVLFLDDSK TARKTLKNHL SKLGFSITEA VDGEDGLNKL EMLFKKYGDD LRKHLKFIIS DVEMPKMDGY HFLFKLQKDP RFAYIPVIFN SSICDNYSAE RAKEMGAVAY LVKFDAEKFT EEISKILDKN A // ID O25583_HELPY Unreviewed; 303 AA. AC O25583; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 104. DE SubName: Full=Geranyltranstransferase (IspA) {ECO:0000313|EMBL:AAD07974.1}; GN OrderedLocusNames=HP_0929 {ECO:0000313|EMBL:AAD07974.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07974.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07974.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3LLW} RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 2-301. RA Patskovsky Y., Toro R., Rutter M., Sauder J.M., Burley S.K., RA Almo S.C.; RT "Crystal Structure of Geranyltransferase from Helicobacter Pylori."; RL Submitted (JAN-2010) to the PDB data bank. RN [3] {ECO:0000213|PDB:3Q1O} RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 2-301. RX PubMed=23493556; DOI=10.1073/pnas.1300632110; RA Wallrapp F.H., Pan J.J., Ramamoorthy G., Almonacid D.E., RA Hillerich B.S., Seidel R., Patskovsky Y., Babbitt P.C., Almo S.C., RA Jacobson M.P., Poulter C.D.; RT "Prediction of function for the polyprenyl transferase subgroup in the RT isoprenoid synthase superfamily."; RL Proc. Natl. Acad. Sci. U.S.A. 110:E1196-E1202(2013). CC -!- SIMILARITY: Belongs to the FPP/GGPP synthase family. CC {ECO:0000256|RuleBase:RU004466}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07974.1; -; Genomic_DNA. DR PIR; A64636; A64636. DR RefSeq; NP_207721.1; NC_000915.1. DR RefSeq; WP_000098051.1; NC_018939.1. DR PDB; 3LLW; X-ray; 2.30 A; A/B/C/D=2-301. DR PDB; 3Q1O; X-ray; 2.40 A; A/B/C/D=2-301. DR PDBsum; 3LLW; -. DR PDBsum; 3Q1O; -. DR ProteinModelPortal; O25583; -. DR DIP; DIP-3360N; -. DR IntAct; O25583; 2. DR MINT; MINT-186267; -. DR STRING; 85962.HP0929; -. DR PaxDb; O25583; -. DR EnsemblBacteria; AAD07974; AAD07974; HP_0929. DR GeneID; 899458; -. DR KEGG; heo:C694_04780; -. DR KEGG; hpy:HP0929; -. DR PATRIC; 20593159; VBIHelPyl33062_0965. DR eggNOG; ENOG4105CTB; Bacteria. DR eggNOG; COG0142; LUCA. DR KO; K00795; -. DR OMA; DGAKNSF; -. DR OrthoDB; EOG6TN43W; -. DR BioCyc; HPY:HP0929-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.600.10; -; 1. DR InterPro; IPR008949; Isoprenoid_synthase_dom. DR InterPro; IPR000092; Polyprenyl_synt. DR InterPro; IPR017446; Polyprenyl_synth-rel. DR PANTHER; PTHR12001; PTHR12001; 1. DR Pfam; PF00348; polyprenyl_synt; 1. DR SUPFAM; SSF48576; SSF48576; 1. DR PROSITE; PS00444; POLYPRENYL_SYNTHASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3LLW, ECO:0000213|PDB:3Q1O}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU004466, KW ECO:0000313|EMBL:AAD07974.1}. SQ SEQUENCE 303 AA; 34267 MW; E0F24CC646FB102C CRC64; MSSPNLSFYY NECERFESFL KNHHLHLESF HPYLEKAFFE MVLNGGKRFR PKLFLAVLCA LVGQKDYSNQ QTEYFKIALS IECLHTYSLI HDDLPCMDNA ALRRNHPTLH AKYDETTAVL IGDALNTYSF ELLSNALLES HIIVELIKIL SANGGIKGMI LGQALDCYFE NTPLNLEQLT FLHEHKTAKL ISASLIMGLV ASGIKDEELF KWLQAFGLKM GLCFQVLDDI IDVTQDEEES GKTTHLDSAK NSFVNLLGLE RANNYAQTLK TEVLNDLDAL KPAYPLLQEN LNALLNTLFK GKT // ID O25141_HELPY Unreviewed; 936 AA. AC O25141; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Cytochrome c biogenesis protein (Ycf5) {ECO:0000313|EMBL:AAD07446.1}; GN OrderedLocusNames=HP_0378 {ECO:0000313|EMBL:AAD07446.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07446.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07446.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07446.1; -; Genomic_DNA. DR PIR; B64567; B64567. DR RefSeq; NP_207176.1; NC_000915.1. DR RefSeq; WP_000793250.1; NC_018939.1. DR ProteinModelPortal; O25141; -. DR DIP; DIP-3139N; -. DR IntAct; O25141; 2. DR MINT; MINT-167295; -. DR STRING; 85962.HP0378; -. DR PaxDb; O25141; -. DR EnsemblBacteria; AAD07446; AAD07446; HP_0378. DR GeneID; 899222; -. DR KEGG; heo:C694_01920; -. DR KEGG; hpy:HP0378; -. DR PATRIC; 20591993; VBIHelPyl33062_0390. DR eggNOG; ENOG4105CRE; Bacteria. DR eggNOG; COG0755; LUCA. DR OMA; SMLYIAW; -. DR OrthoDB; EOG6Z9B0Z; -. DR BioCyc; HPY:HP0378-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro. DR InterPro; IPR002541; Cyt_c_assembly. DR InterPro; IPR007816; ResB-like_domain. DR Pfam; PF01578; Cytochrom_C_asm; 1. DR Pfam; PF05140; ResB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 71 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 637 655 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 667 689 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 701 717 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 724 741 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 761 787 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 799 823 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 843 861 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 868 888 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 908 926 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 218 293 ResB. {ECO:0000259|Pfam:PF05140}. FT DOMAIN 695 896 Cytochrom_C_asm. FT {ECO:0000259|Pfam:PF01578}. SQ SEQUENCE 936 AA; 106360 MW; 42A3C831A342D38E CRC64; MKNLKSLLSF LLASFWVAIP LIALYALACA IATFIENDYG TSASKAIVYN TPWFNFLHAY LLVVLIGTFI NSKALERKRY ASLFFHSSLI FIILGAAITR FFGVEGLMHV RENSAQSSFE SADTYLNITL NDTTKLSLKT PLTFYHSKRL RPIHATLNHK PLILEPLEIY KQNAIKKDDA TILVLKATYN GVSRKFNLIK TNRNEGIEES EVFKDDKLSL SFGSAYIELP FQIKLKRFEL ERYAGSMSPS SYASEVEVLK LDNTLIKPYR IFMNHVLDYE GYRFFQSSYD MDEKGTILSV NKDPGKIPTY LGYAMLILGA LWLLLDKNGR FLKLSRFLKS QQVASFLLAL ILISPFTSSF ANEAPIDMHG GKSAKIERQS VENSAQKENS KSAILERLKR LREYSKDHLK AFQRLQVQDF DGRIKPLDTI SIEYIHKILK KDDFQGLNAM QVLLGIMFFP NDWRSIKMIY TSTKALRKLI GTPLDESRIA FRDAFDSRGY KLKNLVEEVN QKSPNARNEL DKDVLKVDER INLVYTLFSA QFLRIFPSDK TTAWLSPIEA ISSPNKEISS VATEFLKNIF SGFDDALKTN QWDKVEKTLK DLSIYQKEHA KNLYLSSSKV DSEIFLNHTN FFNRLTLPYI LLGLLLFIVV ISSLVKNTIP NIWLTKILYF AILLCALAHS MGLVLRWYVS GHSPWSNAYE SMLYIAWASV IAGFILRSKL ALSASSFLAG IALFVAHLGF MDPQIGHLVP VLKSYWLNIH VSVITASYSF LGLCFVLGIL SLVLFILRKQ GRFNLDKTIL SISAINEMSM ILGLFMLTAG NFLGGVWANE SWGRYWGWDP KETWALISIC VYALILHLRF LGSHNWPFIL ASSSVLGFYS VLMTYFGVNY YLSGLHSYAA GDPLPIPTFL YFLVAIPFAL VILAYFKRHL SLPKLA // ID O25301_HELPY Unreviewed; 678 AA. AC O25301; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07650.1}; GN OrderedLocusNames=HP_0578 {ECO:0000313|EMBL:AAD07650.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07650.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07650.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07650.1; -; Genomic_DNA. DR PIR; B64592; B64592. DR RefSeq; NP_207373.1; NC_000915.1. DR RefSeq; WP_000839094.1; NC_018939.1. DR ProteinModelPortal; O25301; -. DR DIP; DIP-3374N; -. DR IntAct; O25301; 2. DR MINT; MINT-174914; -. DR STRING; 85962.HP0578; -. DR PaxDb; O25301; -. DR EnsemblBacteria; AAD07650; AAD07650; HP_0578. DR GeneID; 898930; -. DR KEGG; heo:C694_02980; -. DR KEGG; hpy:HP0578; -. DR PATRIC; 20592429; VBIHelPyl33062_0603. DR eggNOG; ENOG4105E0M; Bacteria. DR eggNOG; COG1368; LUCA. DR KO; K01002; -. DR OMA; NHLLEFA; -. DR OrthoDB; EOG6SR8X1; -. DR BioCyc; HPY:HP0578-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 36 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 84 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 96 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 185 202 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 294 583 Sulfatase. {ECO:0000259|Pfam:PF00884}. SQ SEQUENCE 678 AA; 77617 MW; 69CDAA09A096FBC7 CRC64; MKSLSNALFS LFLKGFYFTF FMSLLFVFNR IGFILYTGYY KHALKNPVFD EIIKTLFNGA RYDNRVVSSL AILFIIIGLL GLFIPKHQTK MLNIVAYFSI AIILFLNIAN IVYYGIYGNV FDENLLEFLH EDTLTILKMS GEYPIFSSFS LFLILSVLTS FIYFKLQNDL FKPKNAYQAA HTKPLKTFIL FALFSLTQMF YINAQLSFVG ASLDLSIEPA KDPFLMKITP GAFRNLYLLA RNYRQSHNLK FSDFAKETPL EVAKNYFHLK ENPSNNLYEL LTQTSRNNSN QTIQHVFYIV SESLSSWHFD PKFDAIGLTS ALQDLVKKEH AHMLSAFIES APRTVKSLDV QITGLPYIND NNLVNSGVIL PSFPMAIGNI TKTLGYKNNF YYGGSGIWNK LTSFTKKQGF HALYFNNHLL EFAQNKPYPK PIESNWGVHD NILFDYILEN TNPHEKTFSM VMTLSNHAIK NVNLKAFGVP LEKIQQFVEK TPKSENLPDA NSLGHIYWYD KVIVSFIKKA SQKFPNSLFI ITGDHFDRSY EYAKNDLYII KSVPLILYAP TLKPKKISQV GSHLDIAPTI IELVAPKGFQ FVSFGKPLFS NNTTNPPSHP NYALGYEAIA TKDYFYNPSL GLRYLNESPK EPKDKQNDKI EASKFYQQLE SLKALSYYLL YHGANLKD // ID O24877_HELPY Unreviewed; 334 AA. AC O24877; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07109.1}; GN OrderedLocusNames=HP_0036 {ECO:0000313|EMBL:AAD07109.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07109.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07109.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07109.1; -; Genomic_DNA. DR PIR; D64524; D64524. DR RefSeq; NP_206838.1; NC_000915.1. DR RefSeq; WP_000468475.1; NC_018939.1. DR ProteinModelPortal; O24877; -. DR IntAct; O24877; 2. DR MINT; MINT-4059430; -. DR STRING; 85962.HP0036; -. DR PaxDb; O24877; -. DR EnsemblBacteria; AAD07109; AAD07109; HP_0036. DR GeneID; 899144; -. DR KEGG; heo:C694_00170; -. DR KEGG; hpy:HP0036; -. DR PATRIC; 20591271; VBIHelPyl33062_0037. DR eggNOG; ENOG41066ST; Bacteria. DR eggNOG; ENOG4111TP9; LUCA. DR OMA; GVISNIC; -. DR OrthoDB; EOG6716JQ; -. DR BioCyc; HPY:HP0036-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001478; PDZ. DR Pfam; PF13180; PDZ_2; 1. DR SUPFAM; SSF50156; SSF50156; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 170 247 PDZ (DHR). {ECO:0000259|Pfam:PF13180}. SQ SEQUENCE 334 AA; 38533 MW; CBA9FFCCF3E711D2 CRC64; MFHKALITFI VLWFFLNGLG AYDFKHCQAF FKKASLQKGG VALKELPKGV YLYYSKTYPK HAKVIKSDPF VGLYLLQSAP SEYVYTLRDL DKDALIRPMA SIGDKEALET RLLVGQRGYE RYAQISQKTQ KNGVISNICY QMLGLGVGGN GFIETKFIKR FLNQQEPYYG DIGVRLEEHH KRLVVVQFDP FFPKNPFLKN DEILAINHQK IHSLAEFEWV VSNLKYQSLA KVEIKRNHKV KEVTLKVNKR YGGFLLKDTF LERYGIALDE RFIITKIGAH LPKGLDFLKL GDRILWVNYK SVASNPKALR EALSAPKIEL LVLRKGFEFY IKVR // ID O25159_HELPY Unreviewed; 182 AA. AC O25159; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07467.1}; GN OrderedLocusNames=HP_0398 {ECO:0000313|EMBL:AAD07467.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07467.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07467.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07467.1; -; Genomic_DNA. DR PIR; F64569; F64569. DR RefSeq; NP_207196.1; NC_000915.1. DR RefSeq; WP_001211134.1; NC_018939.1. DR ProteinModelPortal; O25159; -. DR STRING; 85962.HP0398; -. DR PaxDb; O25159; -. DR EnsemblBacteria; AAD07467; AAD07467; HP_0398. DR GeneID; 899227; -. DR KEGG; heo:C694_02020; -. DR KEGG; hpy:HP0398; -. DR PATRIC; 20592035; VBIHelPyl33062_0411. DR OMA; IRYHAVF; -. DR OrthoDB; EOG6VXF90; -. DR BioCyc; HPY:HP0398-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 182 AA; 21167 MW; A72EB8A95EAE3C1D CRC64; MRFKGVVAFI SLAVALGVLA YLFLSVKKEM PATSHAISQT HAISQTNEGL SQTDAKSHDI DLEENSPTET SHNEKASHNE EDHNNALSQN LDAQESINYP VVEHYSEIPF EEKKREYSKL IIKDLKDYQW WCLKEILKKE QIDYAYDNTK NQPNLIIYLD ENKKERLLAD LDYYKIRYHA VF // ID O25481_HELPY Unreviewed; 278 AA. AC O25481; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Outer membrane protein (Omp18) {ECO:0000313|EMBL:AAD07846.1}; GN OrderedLocusNames=HP_0796 {ECO:0000313|EMBL:AAD07846.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07846.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07846.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07846.1; -; Genomic_DNA. DR PIR; D64619; D64619. DR RefSeq; NP_207589.1; NC_000915.1. DR RefSeq; WP_001037790.1; NC_018939.1. DR ProteinModelPortal; O25481; -. DR STRING; 85962.HP0796; -. DR PaxDb; O25481; -. DR EnsemblBacteria; AAD07846; AAD07846; HP_0796. DR GeneID; 899349; -. DR KEGG; heo:C694_04080; -. DR KEGG; hpy:HP0796; -. DR PATRIC; 20592879; VBIHelPyl33062_0828. DR OMA; SVVQMSW; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP0796-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 278 AA; 33319 MW; B7F688CBFE979997 CRC64; MNKLLKRGFL AFFLSVYLRA DDLVTYTIIK EKDLGYQRFL AKKCLRGKTH PPCFTKPKKP KRKLFNIDKS SHYYGTSVVQ MSWLQSREKF ENHSKYRDIP FAEVSLIYGY KQFFPKKERY GFRFYVSLDY AYGFFLKNKG VLGDSLRESS QIPKSYREKL QRKETFINAI FYGAGADFLY KRAFGTLILG MNFVGETWFY ETKIFKKWAK DPLSVYHPYM FQVMLNVGYR YRFSRYKNWA IELGARIPFL TNDYFKTPLY TLHFKRNISV YLTSTYDF // ID O25070_HELPY Unreviewed; 334 AA. AC O25070; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 96. DE SubName: Full=Dipeptide ABC transporter, permease protein (DppB) {ECO:0000313|EMBL:AAD07368.1}; GN OrderedLocusNames=HP_0299 {ECO:0000313|EMBL:AAD07368.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07368.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07368.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07368.1; -; Genomic_DNA. DR PIR; C64557; C64557. DR RefSeq; NP_207097.1; NC_000915.1. DR RefSeq; WP_000947999.1; NC_018939.1. DR ProteinModelPortal; O25070; -. DR DIP; DIP-3447N; -. DR IntAct; O25070; 2. DR MINT; MINT-176755; -. DR STRING; 85962.HP0299; -. DR PaxDb; O25070; -. DR EnsemblBacteria; AAD07368; AAD07368; HP_0299. DR GeneID; 899200; -. DR KEGG; heo:C694_01510; -. DR KEGG; hpy:HP0299; -. DR PATRIC; 20591825; VBIHelPyl33062_0310. DR eggNOG; ENOG4105CJM; Bacteria. DR eggNOG; COG0601; LUCA. DR KO; K12369; -. DR OMA; LIHIIAP; -. DR OrthoDB; EOG66F098; -. DR BioCyc; HPY:HP0299-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 2. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 2. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 9 30 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 101 122 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 134 155 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 201 219 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 255 281 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 301 327 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 95 320 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 334 AA; 37005 MW; 2C56FB3CEF1FD710 CRC64; MLSFIIKRIL WAIPTLFGVS IIVFMMVHLV PGDPALVILG EKANQAAIDA LREQFGLNKP LIEQYFFFIN NVLHGNFGTS IMTGEPVMHE FWQRFPATVE LALIALFMAL VLGISVGVLA AIKRYSVFDY SSMTFALAGI SMPVFWLGLM LIYIFSVQLG WLPVFGRLSD VYYLDGPTGL YLIDSLIARD YGAFMDTIKH LILPSIVLAT VSTAVIARMT RASMAEVSKE DYVRTAKAKG CSSFRVIFVH TLRNALIPVT TIAGLMLAGL LGGSMITETV FSWPGIGKWI VNALNQRDFP IIQSMSLIIA MMYIGANLLV DILYAFIDPR IRLS // ID O24979_HELPY Unreviewed; 258 AA. AC O24979; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07243.1}; GN OrderedLocusNames=HP_0174 {ECO:0000313|EMBL:AAD07243.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07243.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07243.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07243.1; -; Genomic_DNA. DR PIR; F64541; F64541. DR RefSeq; NP_206973.1; NC_000915.1. DR RefSeq; WP_001238975.1; NC_000915.1. DR ProteinModelPortal; O24979; -. DR DIP; DIP-3303N; -. DR IntAct; O24979; 2. DR MINT; MINT-163347; -. DR STRING; 85962.HP0174; -. DR PaxDb; O24979; -. DR PRIDE; O24979; -. DR EnsemblBacteria; AAD07243; AAD07243; HP_0174. DR GeneID; 900210; -. DR KEGG; hpy:HP0174; -. DR PATRIC; 20591569; VBIHelPyl33062_0184. DR eggNOG; ENOG4108X8F; Bacteria. DR eggNOG; ENOG4111KQI; LUCA. DR OMA; RFSFFCY; -. DR OrthoDB; EOG635897; -. DR BioCyc; HPY:HP0174-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 36 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 131 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 223 252 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 258 AA; 30302 MW; 8F1F79F1FB49F14B CRC64; MRLNYPSKVS EEGFQVMVLS LSILKKSFND FLSTRMLLIN LGPILLSLAF FGAVFYYNGG NIVGYCQTLL PQSLNDYSHS QGFFAGVFAW VFKALVYFLI FWIVILLSLV INIFASIFYT PLVVSYLHQK YYPHVVLEEF GSILFSIKYF LKSLAFMLLF LAVLTPFYFI PFIGVFGVFF SIVPHFLFFK NTMSLDIASM IFNHQSYQNL LKQHRLKHYR FSFFCYLFSL IPFFNFFATL LQTLMLTHYF FIFKEKEC // ID O25463_HELPY Unreviewed; 245 AA. AC O25463; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07824.1}; GN OrderedLocusNames=HP_0771 {ECO:0000313|EMBL:AAD07824.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07824.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07824.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07824.1; -; Genomic_DNA. DR PIR; C64616; C64616. DR RefSeq; NP_207564.1; NC_000915.1. DR RefSeq; WP_001012473.1; NC_018939.1. DR ProteinModelPortal; O25463; -. DR STRING; 85962.HP0771; -. DR PaxDb; O25463; -. DR EnsemblBacteria; AAD07824; AAD07824; HP_0771. DR GeneID; 899339; -. DR KEGG; heo:C694_03960; -. DR KEGG; hpy:HP0771; -. DR PATRIC; 20592831; VBIHelPyl33062_0804. DR OMA; IQTKEYY; -. DR OrthoDB; EOG6CK7P0; -. DR BioCyc; HPY:HP0771-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 72 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 124 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 136 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 179 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 191 209 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 215 234 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 245 AA; 28695 MW; AFE7F93D17AC63EA CRC64; MNFYQKIYTH KVVFSSLFFL LFLFNVETLL LSHFSDDFSQ LFFLFENHVY DFIVKLDYLG LIGVSLIYLL VLILKPFTLT RQKCACVGIL CLSFYAWNFP VKDSLMVLYL FYFALLATLL WRFLGASMKQ SFLPSMNICI VWVFASSLQS FRFLSVSDCV DFSLFTLALI LLILVLIYCK RLFGLYEYAN TLILIVGLSV VVLCSSMFIQ TKEYYGMRLG FYFLGLLGWL LEYVHNTLRR LEHQI // ID O24957_HELPY Unreviewed; 73 AA. AC O24957; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Cbb3-type cytochrome c oxidase subunit Q (CcoQ) {ECO:0000313|EMBL:AAD07222.1}; GN OrderedLocusNames=HP_0146 {ECO:0000313|EMBL:AAD07222.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07222.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07222.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07222.1; -; Genomic_DNA. DR PIR; B64538; B64538. DR RefSeq; NP_206945.1; NC_000915.1. DR RefSeq; WP_000968934.1; NC_000915.1. DR ProteinModelPortal; O24957; -. DR STRING; 85962.HP0146; -. DR PaxDb; O24957; -. DR PRIDE; O24957; -. DR EnsemblBacteria; AAD07222; AAD07222; HP_0146. DR GeneID; 900236; -. DR KEGG; hpy:HP0146; -. DR PATRIC; 20591511; VBIHelPyl33062_0155. DR eggNOG; ENOG4106BAR; Bacteria. DR eggNOG; COG4736; LUCA. DR KO; K00407; -. DR OMA; PRHKKVH; -. DR OrthoDB; EOG6TJ833; -. DR BioCyc; HPY:HP0146-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR008621; Cbb3-typ_cyt_oxidase_comp. DR InterPro; IPR014107; Cyt_c_oxidase_cbb3_CcoQ. DR Pfam; PF05545; FixQ; 1. DR TIGRFAMs; TIGR02736; cbb3_Q_epsi; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 73 AA; 8770 MW; 80504DB852C1722E CRC64; MMDLESLRGF AYAFFTILFT LFLYAYIFSM YRKQKKGIMD YERYGYLALN DALEDELIEP RHKKVHDNGI KES // ID O25109_HELPY Unreviewed; 130 AA. AC O25109; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07413.1}; GN OrderedLocusNames=HP_0342 {ECO:0000313|EMBL:AAD07413.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07413.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07413.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07413.1; -; Genomic_DNA. DR PIR; F64562; F64562. DR RefSeq; NP_207140.1; NC_000915.1. DR RefSeq; WP_010875466.1; NC_000915.1. DR ProteinModelPortal; O25109; -. DR STRING; 85962.HP0342; -. DR PaxDb; O25109; -. DR PRIDE; O25109; -. DR EnsemblBacteria; AAD07413; AAD07413; HP_0342. DR GeneID; 898849; -. DR KEGG; hpy:HP0342; -. DR PATRIC; 20591919; VBIHelPyl33062_0356. DR eggNOG; ENOG410696E; Bacteria. DR eggNOG; COG3326; LUCA. DR OMA; EFASIVW; -. DR OrthoDB; EOG6FJNHX; -. DR BioCyc; HPY:HP0342-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR010718; DUF1294. DR Pfam; PF06961; DUF1294; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 113 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 130 AA; 14986 MW; 7AB9C951A202B1E9 CRC64; MSVEFASIVW LLIVNILIFI LMLVDKNSAD QKMWRIPEKA LWVLSLLGGS VGFLVAMVVS HHKILKPEFK YGVSLIYLIE STILYFVSKD LSWIVALTIF SLSLILVAFK IFLLKDNPNK RFKNNKRDKK // ID O24923_HELPY Unreviewed; 237 AA. AC O24923; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07171.1}; GN OrderedLocusNames=HP_0097 {ECO:0000313|EMBL:AAD07171.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07171.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07171.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07171.1; -; Genomic_DNA. DR PIR; A64532; A64532. DR RefSeq; NP_206897.1; NC_000915.1. DR RefSeq; WP_000725112.1; NC_018939.1. DR ProteinModelPortal; O24923; -. DR PaxDb; O24923; -. DR EnsemblBacteria; AAD07171; AAD07171; HP_0097. DR GeneID; 900163; -. DR KEGG; heo:C694_00475; -. DR KEGG; hpy:HP0097; -. DR PATRIC; 20591405; VBIHelPyl33062_0102. DR OMA; MFYYGQG; -. DR OrthoDB; EOG6CGCCQ; -. DR BioCyc; HPY:HP0097-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 237 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157879. SQ SEQUENCE 237 AA; 26069 MW; 43009417638F55B9 CRC64; MKKIVLVAIA LLMSACASYK ITPEHVTSYN NGIQVMTSTQ AKSKVQLEIA QSKLKGLNES PLVLYVAAQV IEGSPVVFSR KAISVSINQT NLPVLSLRQV MKSSFDFEGI LQSFNIAVPT TPIDNVNMIT PPMFYYGQGG FLAYNGMMYG GMGMYGPGFG MMMMDDVEEQ EVMQESRQAL KILAINYLKN NTLNVESKAK GGFVVVDTKN LKTPGVVVVK VFLEDEIHTF KIDISKM // ID O25298_HELPY Unreviewed; 151 AA. AC O25298; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Galactosidase acetyltransferase (LacA) {ECO:0000313|EMBL:AAD07641.1}; GN OrderedLocusNames=HP_0574 {ECO:0000313|EMBL:AAD07641.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07641.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07641.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07641.1; -; Genomic_DNA. DR PIR; F64591; F64591. DR RefSeq; NP_207369.1; NC_000915.1. DR RefSeq; WP_001037678.1; NC_018939.1. DR ProteinModelPortal; O25298; -. DR STRING; 85962.HP0574; -. DR PaxDb; O25298; -. DR EnsemblBacteria; AAD07641; AAD07641; HP_0574. DR GeneID; 899008; -. DR KEGG; heo:C694_02960; -. DR KEGG; hpy:HP0574; -. DR PATRIC; 20592421; VBIHelPyl33062_0599. DR eggNOG; ENOG4108YZG; Bacteria. DR eggNOG; COG0698; LUCA. DR KO; K01808; -. DR OMA; DYPDFVH; -. DR OrthoDB; EOG679TJ4; -. DR BioCyc; HPY:HP0574-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004751; F:ribose-5-phosphate isomerase activity; IEA:InterPro. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:InterPro. DR Gene3D; 3.40.1400.10; -; 1. DR InterPro; IPR004785; RpiB. DR InterPro; IPR003500; RpiB_LacA_LacB. DR PANTHER; PTHR30345; PTHR30345; 1. DR Pfam; PF02502; LacAB_rpiB; 1. DR PIRSF; PIRSF005384; RpiB_LacA_B; 1. DR SUPFAM; SSF89623; SSF89623; 1. DR TIGRFAMs; TIGR01120; rpiB; 1. DR TIGRFAMs; TIGR00689; rpiB_lacA_lacB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07641.1}. FT ACT_SITE 70 70 Proton acceptor. FT {ECO:0000256|PIRSR:PIRSR005384-1}. FT ACT_SITE 103 103 Proton donor. FT {ECO:0000256|PIRSR:PIRSR005384-1}. SQ SEQUENCE 151 AA; 16924 MW; 55E7B8969106EE37 CRC64; MNKLLKFSQV FIGSDHAGLH LAEFVQRFLE DKDFKIQAFL PTMRVDYPDY AKLVCQKVLE NAQSYGILVC ATGIGMSMGA NRFKGIRAAL CLDAYMAKMT RLHNNANVLC LGEKISGIGV VESILEAFFS TEFEQGRHVL RIQKLDESLK S // ID O26070_HELPY Unreviewed; 394 AA. AC O26070; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Folylpolyglutamate synthase (FolC) {ECO:0000313|EMBL:AAD08584.1}; GN OrderedLocusNames=HP_1545 {ECO:0000313|EMBL:AAD08584.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08584.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08584.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08584.1; -; Genomic_DNA. DR PIR; A64713; A64713. DR RefSeq; NP_208336.1; NC_000915.1. DR RefSeq; WP_000798455.1; NC_018939.1. DR ProteinModelPortal; O26070; -. DR STRING; 85962.HP1545; -. DR PaxDb; O26070; -. DR DNASU; 899746; -. DR EnsemblBacteria; AAD08584; AAD08584; HP_1545. DR GeneID; 899746; -. DR KEGG; heo:C694_08005; -. DR KEGG; hpy:HP1545; -. DR PATRIC; 20594513; VBIHelPyl33062_1624. DR eggNOG; ENOG4105DPM; Bacteria. DR eggNOG; COG0285; LUCA. DR KO; K11754; -. DR OMA; NFKVLHF; -. DR OrthoDB; EOG6ZPSW2; -. DR BioCyc; HPY:HP1545-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004326; F:tetrahydrofolylpolyglutamate synthase activity; IEA:InterPro. DR Gene3D; 3.40.1190.10; -; 1. DR Gene3D; 3.90.190.20; -; 1. DR InterPro; IPR001645; Folylpolyglutamate_synth. DR InterPro; IPR004101; Mur_ligase_C. DR InterPro; IPR013221; Mur_ligase_cen. DR PANTHER; PTHR11136; PTHR11136; 1. DR Pfam; PF08245; Mur_ligase_M; 1. DR SUPFAM; SSF53244; SSF53244; 1. DR SUPFAM; SSF53623; SSF53623; 1. DR TIGRFAMs; TIGR01499; folC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 52 220 Mur_ligase_M. {ECO:0000259|Pfam:PF08245}. SQ SEQUENCE 394 AA; 44880 MW; 8A83869DF25FBFC6 CRC64; MKNSPLNGLN GLKAFLETKP KEYHKFDPSR FIQIYKDFKN AFFEIQAKVI HVVGTNGKGS TGRFLTLLLA DQNFKVLHFT SPHVFEFRER FFLNGSVVGE SVLENAHQQL QSHAFSSACS YFEYATLLAV MLAKDCDYLV LEAGLGGEFD STNALKKTLS VFTPIDYDHK EFLGDSLESI AQTKLKAMGS LSIIAPQQEL VLNAAQKIAK EKHAKLIVVQ NEISKGVRDY IERYHLARFL AMNLEVALKA FETLLPCNKQ EVLKNLKPLN LIGRCELLSP NILIDVGHNP HSAKALKEEI KRIFNAKIIL IYNCYQDKDA FLVLEILKPV IKKVLILELH EERVIKLEKL KGILETLGLE YALFEDVEEN ENYLVYGSFL VANAFYKRYQ EKRD // ID O25195_HELPY Unreviewed; 360 AA. AC O25195; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07514.1}; GN OrderedLocusNames=HP_0447 {ECO:0000313|EMBL:AAD07514.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07514.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07514.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07514.1; -; Genomic_DNA. DR PIR; G64575; G64575. DR RefSeq; NP_207245.1; NC_000915.1. DR RefSeq; WP_010875486.1; NC_000915.1. DR ProteinModelPortal; O25195; -. DR STRING; 85962.HP0447; -. DR PaxDb; O25195; -. DR PRIDE; O25195; -. DR DNASU; 900272; -. DR EnsemblBacteria; AAD07514; AAD07514; HP_0447. DR GeneID; 900272; -. DR KEGG; hpy:HP0447; -. DR PATRIC; 20592153; VBIHelPyl33062_0465. DR eggNOG; ENOG4107U8W; Bacteria. DR eggNOG; COG1112; LUCA. DR OrthoDB; EOG60SCFR; -. DR BioCyc; HPY:HP0447-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 360 AA; 41437 MW; CDB01153015015E0 CRC64; MSLANDLLEI LSSQSPNDKR IRVLLEYISV LERTPWDLES LLRDYNFVFS NTTGQHNQAL ERKETPYFDS VIVDEAAKAN PLELLMVMAL AKERIILVGD DRQLPHYLDD EIGKKLEDES QDAQDEIEKA LKDSMFKKLK ERAQKLKELD GKECFITLNM QYGMHPLLGE LVSDVFYKPH NESFESPLKG KHLEEKPFKH NLRVLDNKPL AWIDVKESKE KRNADGSYYR ESEITAIKEC LDLFMKDEPD FTFGVITFFS EQKRLLEQAL KGYANLEIGT VDSFQGKEFD VVFLSSVRTR HTEGFGFLKI SSCLCVALSR QKRALIVAGD REKFDTPESK DKVSGLFEFL QSCKKEGKIL // ID O25931_HELPY Unreviewed; 265 AA. AC O25931; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Prephenate dehydrogenase (TyrA) {ECO:0000313|EMBL:AAD08422.1}; GN OrderedLocusNames=HP_1380 {ECO:0000313|EMBL:AAD08422.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08422.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08422.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08422.1; -; Genomic_DNA. DR PIR; D64692; D64692. DR RefSeq; NP_208171.1; NC_000915.1. DR RefSeq; WP_010875617.1; NC_000915.1. DR ProteinModelPortal; O25931; -. DR STRING; 85962.HP1380; -. DR PaxDb; O25931; -. DR PRIDE; O25931; -. DR EnsemblBacteria; AAD08422; AAD08422; HP_1380. DR GeneID; 900302; -. DR KEGG; hpy:HP1380; -. DR PATRIC; 20594149; VBIHelPyl33062_1445. DR eggNOG; ENOG4105EVN; Bacteria. DR eggNOG; COG0287; LUCA. DR KO; K04517; -. DR OMA; MEEMREC; -. DR OrthoDB; EOG6B8XMB; -. DR BioCyc; HPY:HP1380-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004665; F:prephenate dehydrogenase (NADP+) activity; IEA:InterPro. DR GO; GO:0008977; F:prephenate dehydrogenase activity; IEA:InterPro. DR GO; GO:0006571; P:tyrosine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR003099; Prephen_DH. DR Pfam; PF02153; PDH; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS51176; PDH_ADH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 265 Prephenate/arogenate dehydrogenase. FT {ECO:0000259|PROSITE:PS51176}. SQ SEQUENCE 265 AA; 29423 MW; 9A1C56EE4080F4BB CRC64; MGGSLGLALQ EWGRFKSVIG YDHNALHAKL ALTLGLVDEC VGFEKILECD VIFLAIPVEG IIGCLKKMTS IKKSATIIDL GGAKAQIIRN IPKSIRKNFI AAHPMCGTEF YGPKASVKGL YENALVILCD LEDSGTEQVE IAKEIFLGVK ARLIKMKSNE HDTHVAYISH LPHVLSYALA NSVLKQNDPE MILSLAGGGF RDMSRLSKSS PLMWKDIFKQ NRDNVLEAIK KCEKEIVQAK AWIENNDYES LAEWMAQANK LQEFM // ID O25501_HELPY Unreviewed; 82 AA. AC O25501; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 103. DE SubName: Full=Ss-DNA binding protein 12RNP2 {ECO:0000313|EMBL:AAD07877.1}; GN OrderedLocusNames=HP_0827 {ECO:0000313|EMBL:AAD07877.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07877.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07877.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2KI2} RP STRUCTURE BY NMR. RX PubMed=19605462; DOI=10.1093/jb/mvp105; RA Jang S.B., Ma C., Lee J.Y., Kim J.H., Park S.J., Kwon A.R., Lee B.J.; RT "NMR solution structure of HP0827 (O25501_HELPY) from Helicobacter RT pylori: model of the possible RNA-binding site."; RL J. Biochem. 146:667-674(2009). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07877.1; -; Genomic_DNA. DR PIR; C64623; C64623. DR RefSeq; NP_207620.1; NC_000915.1. DR RefSeq; WP_001244602.1; NC_018939.1. DR PDB; 2KI2; NMR; -; A=1-82. DR PDBsum; 2KI2; -. DR ProteinModelPortal; O25501; -. DR IntAct; O25501; 6. DR STRING; 85962.HP0827; -. DR PaxDb; O25501; -. DR EnsemblBacteria; AAD07877; AAD07877; HP_0827. DR GeneID; 899363; -. DR KEGG; heo:C694_04235; -. DR KEGG; hpy:HP0827; -. DR PATRIC; 20592943; VBIHelPyl33062_0860. DR eggNOG; ENOG4105VFU; Bacteria. DR eggNOG; COG0724; LUCA. DR OMA; WNTTSED; -. DR OrthoDB; EOG6B8XQ5; -. DR BioCyc; HPY:HP0827-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR Gene3D; 3.30.70.330; -; 1. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR000504; RRM_dom. DR Pfam; PF00076; RRM_1; 1. DR SMART; SM00360; RRM; 1. DR SUPFAM; SSF54928; SSF54928; 1. DR PROSITE; PS50102; RRM; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2KI2}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 79 RRM (RNA recognition motif). FT {ECO:0000259|PROSITE:PS50102}. SQ SEQUENCE 82 AA; 9386 MW; 911DA5D38791430C CRC64; MRNIYVGNLV YSATSEQVKE LFSQFGKVFN VKLIYDRETK KPKGFGFVEM QEESVSEAIA KLDNTDFMGR TIRVTEANPK KS // ID O25059_HELPY Unreviewed; 523 AA. AC O25059; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07352.1}; GN OrderedLocusNames=HP_0284 {ECO:0000313|EMBL:AAD07352.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07352.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07352.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07352.1; -; Genomic_DNA. DR PIR; D64555; D64555. DR RefSeq; NP_207082.1; NC_000915.1. DR RefSeq; WP_001218141.1; NC_018939.1. DR ProteinModelPortal; O25059; -. DR IntAct; O25059; 1. DR MINT; MINT-185417; -. DR STRING; 85962.HP0284; -. DR PaxDb; O25059; -. DR EnsemblBacteria; AAD07352; AAD07352; HP_0284. DR GeneID; 898787; -. DR KEGG; heo:C694_01435; -. DR KEGG; hpy:HP0284; -. DR PATRIC; 20591795; VBIHelPyl33062_0295. DR eggNOG; ENOG4107F7B; Bacteria. DR eggNOG; COG0668; LUCA. DR OMA; ITFDSNH; -. DR OrthoDB; EOG6ZSP4M; -. DR BioCyc; HPY:HP0284-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR006685; MscS_channel. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 245 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 265 283 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 295 320 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 142 168 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 523 AA; 60227 MW; 4979698C7A45956B CRC64; MALRVLLFFC FLFLQAEDKS QELLSIQKQM ALVDKKLAKD DNVWLKKFEN YKIYNQIYTE KESVRQELRR LKNKKSKDLL KISTLEHTLK ALESQQKMFE SYGVNPFKDL IERPNIPNIP NIANPIAIID GISFIKSMHL KHENLKRNQT ALEEVLRLLD QKHQLLNEWH ALDKSAKLSD EIYQTQAKRL ELQGAQNILK TTIGIFQKDS DEAISIVKSQ VKNQLFKLVY VFLAALLSVV FAWILKIISS KYIENNERVY TVNKAINFVN VSVIILIFLF SYLENVTYLV TVLGFASAGL AIAMKDLFMS LLGWFIILIG GSVHVGDRVR IAKGTDIFIG DVLDISMLHI TILEDVTFTT YSNNRRAGRI IFVPNNYIFT TMFANYSHFG MKTVWDGVDF CITFDSDFKK ASKIALNIAT ELSKEYTDIT YKQLNKMRDR YSLRSLSVKP RCFLMPENNG IKISVWYQTN SYATLSLRSK IVAEIVEAFL KEENIHIAYT TSKLLKVDAD FLGDGFGNKR EQK // ID O25952_HELPY Unreviewed; 993 AA. AC O25952; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE SubName: Full=Type I restriction enzyme R protein (HsdR) {ECO:0000313|EMBL:AAD08445.1}; GN OrderedLocusNames=HP_1402 {ECO:0000313|EMBL:AAD08445.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08445.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08445.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08445.1; -; Genomic_DNA. DR PIR; B64695; B64695. DR RefSeq; NP_208193.1; NC_000915.1. DR RefSeq; WP_010875622.1; NC_000915.1. DR ProteinModelPortal; O25952; -. DR DIP; DIP-3460N; -. DR IntAct; O25952; 5. DR MINT; MINT-163620; -. DR STRING; 85962.HP1402; -. DR REBASE; 3076; HpyAORF1403P. DR PaxDb; O25952; -. DR PRIDE; O25952; -. DR EnsemblBacteria; AAD08445; AAD08445; HP_1402. DR GeneID; 899894; -. DR KEGG; hpy:HP1402; -. DR PATRIC; 20594193; VBIHelPyl33062_1467. DR eggNOG; ENOG4105DZR; Bacteria. DR eggNOG; COG0610; LUCA. DR KO; K01153; -. DR OMA; NQKKEFI; -. DR OrthoDB; EOG62G5HP; -. DR BioCyc; HPY:HP1402-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009035; F:Type I site-specific deoxyribonuclease activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR007409; Restrct_endonuc_type1_HsdR_N. DR InterPro; IPR004473; Restrct_endonuc_typeI_HsdR. DR Pfam; PF04313; HSDR_N; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00348; hsdR; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 253 414 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT COILED 688 711 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 993 AA; 116150 MW; 981F4B1EB0731762 CRC64; MMKTEKEVQK QVIETFKSMG YAYLGDLTKS DNENINKESL KAWLIKNQKI EPERWQRIEH KIHNALKNDL YEANQTFYEL LIYGVKTKIS QKNENTQTTW LIDWKDISEN EFSVAEEVSV KGPNAKRPDV VLYVNGIALG VLELKKSSVS VESAIRQNLD NQKKEFIRDF FKTIQLVMAG NESQGLRYGV IETEEKYYLS WKEEGVLKNL FETIECFLKK ERFLEFIHDF LIFDKGKKKC ARFHQYFAIK KTQEFIQRKE GGIIWHTQGS GKSLTMVWLT RWLRRNIKQA RVLIVIDRRE LDAQIKGVFQ GIGEDLYRAD SKKDLLSALF ENKEFLVGSL VHKFDDNDLE DLKKQPVLKE WVVLVDECHR TQSAKLHKAM KSLLPNAIFI AFSGTPLLKQ DKKTSQEVFG NYIHCYKFNE AVSDRVVLDL NYEARSVDQY VSSPEKLDEY FELKTQCLND IAKTELKKKW VNLQKVFSTK DRLARIVQDI VLDMAKLPRL RSEKGNAMLV AESVYNACQY FELFLETELK DKVAVITSYE PNIADLKDCG SDESEESYKY RAYCKMLQNF FDEKDEKKAL NKIKEFEEKV KDRFINEPNR MKLLIVVDKL LTGFDAPSLT YLYIDKKMQD HGLFQAVCRV NRLDGEDKDF GCIIDYSDLF DSLQEVHSDY TNKAFENYER EDIQGLISDK AQKIKKKLEE ARDQLRSLGE SVKEPKDEMD YIAYFCGNDL EKNAQKRRLF YQLVGAFLRM FVELNHLEKP VYSKEEMQQI KQEAEFYRHL QKVVSLSSGD SVDLKSYSEE MRRILDAYIK ATDSKTLIKI EDQGLCEVLA QMDINDFNKE LSQAFKNESS MAESIANNTK KRIIEKEASD PKYYEKLSSL LNDLIFQFRE KKLTYLEYLQ QIQHLAKKVI HKEDRNYPKK INTNALKTLY DNLDGNEALA LETDACIRGN KKDGWVGHNQ KEKNLKIALR KIINDEGLLE NTFNLAKHID EYH // ID O25715_HELPY Unreviewed; 479 AA. AC O25715; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08134.1}; GN OrderedLocusNames=HP_1083 {ECO:0000313|EMBL:AAD08134.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08134.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08134.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08134.1; -; Genomic_DNA. DR PIR; C64655; C64655. DR RefSeq; NP_207874.1; NC_000915.1. DR RefSeq; WP_000798606.1; NC_018939.1. DR ProteinModelPortal; O25715; -. DR STRING; 85962.HP1083; -. DR PaxDb; O25715; -. DR EnsemblBacteria; AAD08134; AAD08134; HP_1083. DR GeneID; 899619; -. DR KEGG; heo:C694_05595; -. DR KEGG; hpy:HP1083; -. DR PATRIC; 20593505; VBIHelPyl33062_1132. DR OMA; HKKWLWG; -. DR OrthoDB; EOG6DC6F7; -. DR BioCyc; HPY:HP1083-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 479 AA; 53144 MW; 7436FCCA0298D764 CRC64; MKNSTPLKNQ VFCGLYVLSL SASLQAFDYK IEVSAESFSK VGFNKKKIDI ARGIYPTETF VTAVGQGNIY ADFLPKGLKD QGHVLEGKIG GTLGGVAYDS TKFNQGGSVI YNYIGYWDGY LGGKRALLDG TSIHECALGS DGKVIDSIAC GNARANKIRR NYLMNNAFLE YRYKDIFLAK GGRYQSNAPY MSGYTQGFEI SAKVKDKNEG IHKLWWFSSW GRAFAYGEWI YDFYSPRTVV KNGRTLNYGI HLVNYTYERK GVSVSPFFQF SPGTYYSPGV VVGYDSNPNF NGVGFRSETK AYILLPVHDP LRRDTYRYAI KAGTAGQSLL IRQRFDYNEF NFGGAFYKVW KNANAYIGTT GNPLGIDFWT NSVYDIGQAL SHVVTADAVS GWVFGGGVHK KWLWGTLWRW TSGTLANEAS AAVNVGYKIS KSLTASVKLE YLGVMTHAGF TVGSYRPTPG SKALYSDRSH LMTTLSAKF // ID O25616_HELPY Unreviewed; 447 AA. AC O25616; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08015.1}; GN OrderedLocusNames=HP_0963 {ECO:0000313|EMBL:AAD08015.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08015.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08015.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08015.1; -; Genomic_DNA. DR PIR; C64640; C64640. DR RefSeq; NP_207755.1; NC_000915.1. DR RefSeq; WP_001862974.1; NC_018939.1. DR ProteinModelPortal; O25616; -. DR STRING; 85962.HP0963; -. DR PaxDb; O25616; -. DR EnsemblBacteria; AAD08015; AAD08015; HP_0963. DR GeneID; 899496; -. DR KEGG; heo:C694_04960; -. DR KEGG; hpy:HP0963; -. DR PATRIC; 20593239; VBIHelPyl33062_1001. DR eggNOG; ENOG41069SE; Bacteria. DR eggNOG; COG0699; LUCA. DR OMA; DNEFLEF; -. DR OrthoDB; EOG654P0C; -. DR BioCyc; HPY:HP0963-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR022812; Dynamin_SF. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00350; Dynamin_N; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 382 409 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 447 AA; 51795 MW; 4A554F24ADE377FD CRC64; MSVNFFKGIF NDNSRAENHQ DNHQNNHQVG LKERYDLIAR ILNARIENEG LEEYQSVLDN EFLEFASGVD SLKEKEIALL TLQEIQKELQ LVASYPSLFQ KTIVAVGGGF SAGKSTFLNN LLGLKLKLPE DMNPTTAIPT YCLKGKREVL MGFSQNGGMV ELPHLAFDHQ FLNSLGFNLK EIMPFMLLSA PSVPFEFLCF IDTPGFNSAK QGYTGGDKEA SKESLKHAKH ILWLISCESG EIHEDDLEYL QELYEEGKQV FIVLSRADRR TKRQLEEVVI KIKETLKDNG IEFLGIGAYS STRYQEYKEF SEKSKVFNSL EEFLMKLNQR SEKQNEILGY LYEVHSMYEK AIEQDANQFK RYQSELHSVR LDLMQKGFDD FSDKIFRRIE NLEKEFSEQE RSKRESLARL NEVIDLFKEG IDKVFDRVSA FTWEKYKEQN DDEEDDD // ID O25142_HELPY Unreviewed; 425 AA. AC O25142; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Fucosyltransferase {ECO:0000313|EMBL:AAD07447.1}; GN OrderedLocusNames=HP_0379 {ECO:0000313|EMBL:AAD07447.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07447.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07447.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07447.1; -; Genomic_DNA. DR PIR; C64567; C64567. DR RefSeq; NP_207177.1; NC_000915.1. DR RefSeq; WP_000487428.1; NC_018939.1. DR ProteinModelPortal; O25142; -. DR SMR; O25142; 1-347. DR DIP; DIP-3408N; -. DR IntAct; O25142; 5. DR MINT; MINT-160723; -. DR STRING; 85962.HP0379; -. DR CAZy; GT10; Glycosyltransferase Family 10. DR PaxDb; O25142; -. DR EnsemblBacteria; AAD07447; AAD07447; HP_0379. DR GeneID; 900087; -. DR KEGG; heo:C694_01925; -. DR KEGG; hpy:HP0379; -. DR PATRIC; 20591995; VBIHelPyl33062_0391. DR eggNOG; ENOG4105GC5; Bacteria. DR eggNOG; ENOG410ZWEQ; LUCA. DR OMA; VANWFNG; -. DR OrthoDB; EOG6C0138; -. DR BioCyc; HPY:HP0379-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0008417; F:fucosyltransferase activity; IEA:InterPro. DR GO; GO:0006486; P:protein glycosylation; IEA:InterPro. DR InterPro; IPR016646; Alpha-1_3/4-FUT_helico. DR InterPro; IPR001503; Glyco_trans_10. DR PANTHER; PTHR11929; PTHR11929; 1. DR Pfam; PF00852; Glyco_transf_10; 1. DR PIRSF; PIRSF016150; Alpha1_3/4FUT_helico; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Glycosyltransferase {ECO:0000313|EMBL:AAD07447.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07447.1}. SQ SEQUENCE 425 AA; 49329 MW; 1182AF180D124A34 CRC64; MFQPLLDAFI ESASIEKMAS KSPPPPLKIA VANWWGDEEI KEFKKSVLYF ILSQRYAITL HQNPNEFSDL VFSNPLGAAR KILSYQNTKR VFYTGENESP NFNLFDYAIG FDELDFNDRY LRMPLYYAHL HYKAELVNDT TAPYKLKDNS LYALKKPSHH FKENHPNLCA VVNDESDLLK RGFASFVASN ANAPMRNAFY DALNSIEPVT GGGSVRNTLG YKVGNKSEFL SQYKFNLCFE NSQGYGYVTE KILDAYFSHT IPIYWGSPSV AKDFNPKSFV NVHDFNNFDE AIDYIKYLHT HPNAYLDMLY ENPLNTLDGK AYFYQDLSFK KILDFFKTIL ENDTIYHKFS TSFMWEYDLH KPLVSIDDLR VNYDDLRVNY DRLLQNASPL LELSQNTTFK IYRKAYQKSL PLLRAVRKLV KKLGL // ID O25144_HELPY Unreviewed; 407 AA. AC O25144; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Zinc-metallo protease (YJR117W) {ECO:0000313|EMBL:AAD07451.1}; GN OrderedLocusNames=HP_0382 {ECO:0000313|EMBL:AAD07451.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07451.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07451.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|RuleBase:RU003983}; CC Note=Binds 1 zinc ion per subunit. CC {ECO:0000256|RuleBase:RU003983}; CC -!- SIMILARITY: Belongs to the peptidase M48B family. CC {ECO:0000256|RuleBase:RU003983}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07451.1; -; Genomic_DNA. DR PIR; F64567; F64567. DR RefSeq; NP_207180.1; NC_000915.1. DR RefSeq; WP_000884428.1; NC_018939.1. DR ProteinModelPortal; O25144; -. DR STRING; 85962.HP0382; -. DR MEROPS; M48.008; -. DR PaxDb; O25144; -. DR EnsemblBacteria; AAD07451; AAD07451; HP_0382. DR GeneID; 899223; -. DR KEGG; heo:C694_01940; -. DR KEGG; hpy:HP0382; -. DR PATRIC; 20592001; VBIHelPyl33062_0394. DR eggNOG; ENOG4105C2Y; Bacteria. DR eggNOG; COG0501; LUCA. DR KO; K06013; -. DR OMA; KKQGCNN; -. DR OrthoDB; EOG6GN70B; -. DR BioCyc; HPY:HP0382-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0071586; P:CAAX-box protein processing; IEA:InterPro. DR InterPro; IPR027057; CAXX_Prtase_1. DR InterPro; IPR001915; Peptidase_M48. DR InterPro; IPR032456; Peptidase_M48_N. DR PANTHER; PTHR10120:SF24; PTHR10120:SF24; 1. DR Pfam; PF01435; Peptidase_M48; 1. DR Pfam; PF16491; Peptidase_M48_N; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|RuleBase:RU003983}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metalloprotease {ECO:0000256|RuleBase:RU003983}; KW Protease {ECO:0000256|RuleBase:RU003983}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Zinc {ECO:0000256|RuleBase:RU003983}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 144 166 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 191 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 287 309 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 321 343 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 44 199 Peptidase_M48_N. FT {ECO:0000259|Pfam:PF16491}. FT DOMAIN 203 404 Peptidase_M48. FT {ECO:0000259|Pfam:PF01435}. SQ SEQUENCE 407 AA; 46277 MW; 1A44765F3092BD07 CRC64; MLDIWIDMII CIFYLLFFTT PYIVGDILQL KFIRQKLCEK PVLLPQKDYE EAGNYAIRKM QLSIISQILD GIIFAGWVFF GLTHLEDLTH YLNLPETLGY LVFALLFLAI QSVLALPISY YTTMHLDKEF GFSKVSLSLF FKDFFKGLSL TLSVGLLLIY TLIMIIEHVE HWEISSFFVV FVFMILANLF YPKIAQLFNQ FTPLNNRDLE SQIEGMMDKV GFKSEGIFVM DASKRDGRLN AYFGGLGKNK RVVLFDTLIS KVGTEGLLAI LGHELGHFKN KDLLKSLGIM GGLLALVFAL IAHLPPLVFE GFNVSQTPAS LIAILLLFLP VFSFYAMPLI GFFSRKNEYN ADKFGASLSS KEVLAKALVS IVSENKAFPY SHPFYVFLHF THPPLLERLK ALDYEIE // ID O25006_HELPY Unreviewed; 183 AA. AC O25006; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07287.1}; GN OrderedLocusNames=HP_0218 {ECO:0000313|EMBL:AAD07287.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07287.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07287.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2EVV} RP X-RAY CRYSTALLOGRAPHY (2.59 ANGSTROMS). RA Kim Y., Xu X., Hong H., Savchenko A., Edwards A., Joachimiak A.; RT "Crystal Structure of the Hypothetical Protein HP0218 from RT Helicobacter pylori."; RL Submitted (NOV-2005) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07287.1; -; Genomic_DNA. DR PIR; B64547; B64547. DR RefSeq; NP_207016.1; NC_000915.1. DR RefSeq; WP_000846523.1; NC_018939.1. DR PDB; 2EVV; X-ray; 2.59 A; A/B/C/D=1-183. DR PDBsum; 2EVV; -. DR ProteinModelPortal; O25006; -. DR SMR; O25006; 1-182. DR DIP; DIP-3281N; -. DR IntAct; O25006; 2. DR MINT; MINT-184430; -. DR STRING; 85962.HP0218; -. DR PaxDb; O25006; -. DR EnsemblBacteria; AAD07287; AAD07287; HP_0218. DR GeneID; 900198; -. DR KEGG; heo:C694_01100; -. DR KEGG; hpy:HP0218; -. DR PATRIC; 20591659; VBIHelPyl33062_0229. DR eggNOG; ENOG4105KIS; Bacteria. DR eggNOG; COG1881; LUCA. DR KO; K06910; -. DR OMA; FEVMIQT; -. DR OrthoDB; EOG6PKFJ5; -. DR BioCyc; HPY:HP0218-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.90.280.10; -; 1. DR InterPro; IPR008914; PtdEtn-bd_prot_PEBP. DR InterPro; IPR005247; YbhB_YbcL. DR Pfam; PF01161; PBP; 1. DR SUPFAM; SSF49777; SSF49777; 1. DR TIGRFAMs; TIGR00481; TIGR00481; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2EVV}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT BINDING 135 135 Sulfate. {ECO:0000213|PDB:2EVV}. SQ SEQUENCE 183 AA; 20690 MW; 54C254A1BAC80C40 CRC64; MKTFEVMIQT DSKGYLDAKF GGNAPKAFLN SNGLPTYSPK ISWQKVEGAQ SYALELIDHD AQKVCGMPFV HWVVGNIAHN VLEENASMMD KRIVQGVNSL TQGFIRSPLN ESEKQRSNLN NSVYIGPMPP NGDHHYLIQV YALDIPKLAL KAPFFLGDLH DKMRNHIIAI GRKEFLYKQF VRK // ID O25527_HELPY Unreviewed; 364 AA. AC O25527; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07914.1}; GN OrderedLocusNames=HP_0856 {ECO:0000313|EMBL:AAD07914.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07914.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07914.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07914.1; -; Genomic_DNA. DR PIR; H64626; H64626. DR RefSeq; NP_207650.1; NC_000915.1. DR RefSeq; WP_000397925.1; NC_018939.1. DR ProteinModelPortal; O25527; -. DR STRING; 85962.HP0856; -. DR PaxDb; O25527; -. DR EnsemblBacteria; AAD07914; AAD07914; HP_0856. DR GeneID; 899385; -. DR KEGG; heo:C694_04385; -. DR KEGG; hpy:HP0856; -. DR PATRIC; 20593001; VBIHelPyl33062_0888. DR eggNOG; ENOG4108S2X; Bacteria. DR eggNOG; ENOG4111FE4; LUCA. DR OMA; PIDWHER; -. DR OrthoDB; EOG67HJR4; -. DR BioCyc; HPY:HP0856-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 9 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 141 164 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 364 AA; 42996 MW; CA33773729E2C1DD CRC64; MEFYKKQTLI IVSFCLSLLI GVGLFNYLID PFEYFRKAKY PIDWHERVGG TLLSFEGVIK HYPYNNILIG TSISLNFSLK DIHDLLGLKD PIKLTVSGMN IGEILSLLPF AFKHQPVNTV AMDLAFFEFI LNKESKYFFE YPYFTGGFVY LYNFGVLKNA LFYFSTNYLK IKEKTFCKLN SWFQLYDFCN SVLNRYDFDF MFSHNNPYDY SLDNVKRSYL SALKNPNQLA IDEENAYKIT KQLEDFIQKH SDKHFILWTR TDSLLKYKVY NHTILTRNLN TIHNALKTLL KYPNVEIHDL RTMPLAKEIK RYKDIRHYDP IGSKEVLQAI ASKKYLLTPN NIDSFKQKLI QTIENYQIPK EIQN // ID O25882_HELPY Unreviewed; 83 AA. AC O25882; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08375.1}; GN OrderedLocusNames=HP_1324 {ECO:0000313|EMBL:AAD08375.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08375.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08375.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08375.1; -; Genomic_DNA. DR PIR; D64685; D64685. DR RefSeq; NP_208116.1; NC_000915.1. DR RefSeq; WP_001067651.1; NC_018939.1. DR ProteinModelPortal; O25882; -. DR DIP; DIP-3709N; -. DR IntAct; O25882; 1. DR MINT; MINT-180499; -. DR STRING; 85962.HP1324; -. DR PaxDb; O25882; -. DR EnsemblBacteria; AAD08375; AAD08375; HP_1324. DR GeneID; 900330; -. DR KEGG; heo:C694_06835; -. DR KEGG; hpy:HP1324; -. DR PATRIC; 20594029; VBIHelPyl33062_1385. DR OMA; NPEKATH; -. DR OrthoDB; EOG69PQ7B; -. DR BioCyc; HPY:HP1324-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 83 AA; 9612 MW; 3C244C592A0A1320 CRC64; MNPEKATHCK EIRKILKEAL HDNKDLNLYL ESGSKHAKLT SGANHLIIPS SPSDRKSVKN FEKELTEFIK RLRENRITHE TCE // ID O25637_HELPY Unreviewed; 77 AA. AC O25637; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08040.1}; GN OrderedLocusNames=HP_0987 {ECO:0000313|EMBL:AAD08040.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08040.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08040.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08040.1; -; Genomic_DNA. DR PIR; C64643; C64643. DR RefSeq; NP_207778.1; NC_000915.1. DR RefSeq; WP_000886948.1; NC_018939.1. DR ProteinModelPortal; O25637; -. DR STRING; 85962.HP0987; -. DR PaxDb; O25637; -. DR EnsemblBacteria; AAD08040; AAD08040; HP_0987. DR GeneID; 899520; -. DR KEGG; heo:C694_05095; -. DR KEGG; hpy:HP0987; -. DR PATRIC; 20593299; VBIHelPyl33062_1031. DR eggNOG; COG3843; LUCA. DR BioCyc; HPY:HP0987-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 77 AA; 8888 MW; 6B4E9F935E2FD64A CRC64; MLDRAILDTK LDSRPMDLSF LDDILKHMQK PRFSDSDKVD KRLLIKFNQF KPPKQKSQIS LVFGMNALVP LGTIKTL // ID O24902_HELPY Unreviewed; 86 AA. AC O24902; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07139.1}; GN OrderedLocusNames=HP_0062 {ECO:0000313|EMBL:AAD07139.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07139.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07139.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2GTS} RP X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS). RG Midwest Center for Structural Genomics (MCSG); RA Binkowski T.A., Xu X., Savchenko A., Edwards A., Joachimiak A.; RT "Hypothetical protein HP0062 from Helicobacter pylori."; RL Submitted (APR-2006) to the PDB data bank. RN [3] {ECO:0000213|PDB:3FX7} RP X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS). RX PubMed=19564156; DOI=10.1093/jb/mvp098; RA Jang S.B., Kwon A.R., Son W.S., Park S.J., Lee B.J.; RT "Crystal structure of hypothetical protein HP0062 (O24902_HELPY) from RT Helicobacter pylori at 1.65 A resolution."; RL J. Biochem. 146:535-540(2009). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07139.1; -; Genomic_DNA. DR PIR; F64527; F64527. DR RefSeq; NP_206862.1; NC_000915.1. DR RefSeq; WP_000092102.1; NC_018939.1. DR PDB; 2GTS; X-ray; 2.10 A; A=1-86. DR PDB; 3FX7; X-ray; 1.65 A; A/B=1-86. DR PDBsum; 2GTS; -. DR PDBsum; 3FX7; -. DR ProteinModelPortal; O24902; -. DR SMR; O24902; 4-80. DR DIP; DIP-3125N; -. DR IntAct; O24902; 4. DR MINT; MINT-164382; -. DR STRING; 85962.HP0062; -. DR PaxDb; O24902; -. DR EnsemblBacteria; AAD07139; AAD07139; HP_0062. DR GeneID; 899000; -. DR KEGG; heo:C694_00295; -. DR KEGG; hpy:HP0062; -. DR PATRIC; 20591325; VBIHelPyl33062_0064. DR OMA; RRDKFSE; -. DR OrthoDB; EOG6FV881; -. DR BioCyc; HPY:HP0062-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.287.850; -; 1. DR InterPro; IPR029013; HP0062-like. DR SUPFAM; SSF158414; SSF158414; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2GTS, ECO:0000213|PDB:3FX7}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 86 AA; 10517 MW; D2FDE17F1987AD62 CRC64; MSRVQMDTEE VREFVGHLER FKELLREEVN SLSNHFHNLE SWRDARRDKF SEVLDNLKST FNEFDEAAQE QIAWLKERIR VLEEDY // ID O26067_HELPY Unreviewed; 136 AA. AC O26067; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08589.1}; GN OrderedLocusNames=HP_1542 {ECO:0000313|EMBL:AAD08589.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08589.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08589.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25063:HP_0289; NbExp=4; IntAct=EBI-7644202, EBI-7493139; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08589.1; -; Genomic_DNA. DR PIR; F64712; F64712. DR RefSeq; NP_208333.1; NC_000915.1. DR RefSeq; WP_000963941.1; NC_018939.1. DR ProteinModelPortal; O26067; -. DR DIP; DIP-3754N; -. DR IntAct; O26067; 9. DR MINT; MINT-162254; -. DR STRING; 85962.HP1542; -. DR PaxDb; O26067; -. DR DNASU; 899749; -. DR EnsemblBacteria; AAD08589; AAD08589; HP_1542. DR GeneID; 899749; -. DR KEGG; heo:C694_07990; -. DR KEGG; hpy:HP1542; -. DR PATRIC; 20594507; VBIHelPyl33062_1621. DR eggNOG; ENOG41084DX; Bacteria. DR eggNOG; COG1664; LUCA. DR OMA; HLDYHLH; -. DR OrthoDB; EOG6VQPRR; -. DR BioCyc; HPY:HP1542-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007607; DUF583. DR Pfam; PF04519; Bactofilin; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 136 AA; 14567 MW; ED5652262167A838 CRC64; MAIFDNNNKS ANAKTGPATI IAQGTKIKGE LHLDYHLHVD GELEGVVHSK STVVIGQTGS VVGEIFTNKL VVSGKFTGTV EAEVVEIMPL GHLDGKISSQ ELVVERKGIL IGETRPKNIQ GGALLINEQE KKIENK // ID O25821_HELPY Unreviewed; 110 AA. AC O25821; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08279.1}; GN OrderedLocusNames=HP_1223 {ECO:0000313|EMBL:AAD08279.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08279.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08279.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2K0Z} RP STRUCTURE BY NMR. RA Wu B., Yee A., Lemak A., Cort J., Semest A., Kenney M.A., RA Arrowsmith C.H.; RT "Solution NMR structure of protein hp1203 from Helicobacter pylori RT 26695. Northeast Structural Genomics Consortium (NESG) target RT PT1/Ontario Center for Structural Proteomics target hp1203."; RL Submitted (FEB-2008) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08279.1; -; Genomic_DNA. DR PIR; G64672; G64672. DR RefSeq; NP_208015.1; NC_000915.1. DR RefSeq; WP_000888834.1; NC_018939.1. DR PDB; 2K0Z; NMR; -; A=1-110. DR PDBsum; 2K0Z; -. DR ProteinModelPortal; O25821; -. DR SMR; O25821; 1-110. DR DIP; DIP-3671N; -. DR IntAct; O25821; 5. DR MINT; MINT-160019; -. DR STRING; 85962.HP1223; -. DR PaxDb; O25821; -. DR EnsemblBacteria; AAD08279; AAD08279; HP_1223. DR GeneID; 899070; -. DR KEGG; heo:C694_06315; -. DR KEGG; hpy:HP1223; -. DR PATRIC; 20593817; VBIHelPyl33062_1279. DR eggNOG; COG0607; LUCA. DR OMA; MVYDDTC; -. DR OrthoDB; EOG64FKHM; -. DR BioCyc; HPY:HP1223-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.250.10; -; 1. DR InterPro; IPR001763; Rhodanese-like_dom. DR Pfam; PF00581; Rhodanese; 1. DR SMART; SM00450; RHOD; 1. DR SUPFAM; SSF52821; SSF52821; 1. DR PROSITE; PS50206; RHODANESE_3; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2K0Z}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 102 Rhodanese. {ECO:0000259|PROSITE:PS50206}. SQ SEQUENCE 110 AA; 12932 MW; 97B393EEB2A950F6 CRC64; MLEDYAISLE EVNFNDFIVV DVRELDEYEE LHLPNATLIS VNDQEKLADF LSQHKDKKVL LHCRAGRRAL DAAKSMHELG YTPYYLEGNV YDFEKYGFRM VYDDTCDKKN // ID O25877_HELPY Unreviewed; 220 AA. AC O25877; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Nicotinamide mononucleotide transporter (PnuC) {ECO:0000313|EMBL:AAD08333.1}; GN OrderedLocusNames=HP_1290 {ECO:0000313|EMBL:AAD08333.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08333.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08333.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08333.1; -; Genomic_DNA. DR PIR; B64681; B64681. DR RefSeq; NP_208082.1; NC_000915.1. DR RefSeq; WP_000909307.1; NC_018939.1. DR ProteinModelPortal; O25877; -. DR DIP; DIP-3689N; -. DR IntAct; O25877; 2. DR MINT; MINT-176482; -. DR STRING; 85962.HP1290; -. DR PaxDb; O25877; -. DR EnsemblBacteria; AAD08333; AAD08333; HP_1290. DR GeneID; 898906; -. DR KEGG; heo:C694_06665; -. DR KEGG; hpy:HP1290; -. DR PATRIC; 20593961; VBIHelPyl33062_1351. DR eggNOG; ENOG4107IU8; Bacteria. DR eggNOG; COG3201; LUCA. DR KO; K03811; -. DR OMA; EQHEGVI; -. DR OrthoDB; EOG61CKZR; -. DR BioCyc; HPY:HP1290-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0034257; F:nicotinamide riboside transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR006419; NMN_transpt_PnuC. DR Pfam; PF04973; NMN_transporter; 1. DR TIGRFAMs; TIGR01528; NMN_trans_PnuC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 72 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 78 98 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 119 136 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 163 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 170 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 211 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 220 AA; 25447 MW; 3D2990052D1B914D CRC64; MLITTQLSKR FYATLALSCV FLTITNILVK GSFINLLAGL SGVLYAFFAG ERQTICFVFG LVYNLSYAYV AYQWKLNADV ILCLFLYMPV TIYGLFAWKK TEQHEGVIKA QKLSKNWRFI LILGVGVLTC VSALFFKEIK TNFLWAESFN FVIFIIAFIL QVLRYIENYA LVTLGNIVSI IVWFCIFQIS TESLVQLFTT ILYLFIGLYY FNRWNKSCKQ // ID O25145_HELPY Unreviewed; 174 AA. AC O25145; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07463.1}; GN OrderedLocusNames=HP_0383 {ECO:0000313|EMBL:AAD07463.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07463.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07463.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07463.1; -; Genomic_DNA. DR PIR; G64567; G64567. DR RefSeq; NP_207181.1; NC_000915.1. DR RefSeq; WP_001120630.1; NC_018939.1. DR ProteinModelPortal; O25145; -. DR DIP; DIP-3410N; -. DR IntAct; O25145; 1. DR MINT; MINT-167468; -. DR STRING; 85962.HP0383; -. DR PaxDb; O25145; -. DR EnsemblBacteria; AAD07463; AAD07463; HP_0383. DR GeneID; 900085; -. DR KEGG; heo:C694_01945; -. DR KEGG; hpy:HP0383; -. DR PATRIC; 20592003; VBIHelPyl33062_0395. DR OMA; IRMQYTA; -. DR OrthoDB; EOG693GQ5; -. DR BioCyc; HPY:HP0383-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 151 171 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 174 AA; 19843 MW; 4F68660B059D1EB8 CRC64; MPHSFKKRFL IIYTLSTLLL VGVLLALFFF YAKNNLLENT QIRMQYTADA IAKSLLELNN ASSLEPLKIL EERFKNTPFV LLDADNKVKF SNIGAFVASF KNDALIKTPY FALKKQGFYL TDSAPTNRLG VSKIIIAEEE IQKNFIPLYK MIGYAFLGAS LFVALIARWL YKIQ // ID O26089_HELPY Unreviewed; 197 AA. AC O26089; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08612.1}; GN OrderedLocusNames=HP_1569 {ECO:0000313|EMBL:AAD08612.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08612.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08612.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08612.1; -; Genomic_DNA. DR PIR; A64716; A64716. DR RefSeq; NP_208360.1; NC_000915.1. DR RefSeq; WP_000831002.1; NC_018939.1. DR ProteinModelPortal; O26089; -. DR STRING; 85962.HP1569; -. DR PaxDb; O26089; -. DR EnsemblBacteria; AAD08612; AAD08612; HP_1569. DR GeneID; 899722; -. DR KEGG; heo:C694_08130; -. DR KEGG; hpy:HP1569; -. DR PATRIC; 20594565; VBIHelPyl33062_1650. DR eggNOG; ENOG410638D; Bacteria. DR eggNOG; ENOG4112BQH; LUCA. DR OMA; SIQAHLF; -. DR OrthoDB; EOG6J74V6; -. DR BioCyc; HPY:HP1569-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 197 AA; 22825 MW; 050BB01F82383674 CRC64; MKRSSFTSNS VLNFFVVLSF ITIGLVFFFL RSQPTSVVSK ENIPKIELEN FKAFQINDKI LDLSIEGKKA LQYDDHEIFF DSKIKRYDED TIESVESPKA KRQQDLYFFP NGVTYKRSDD SSFWSETGIY NHKEQNFKGK GRFILTSKDS KIEGLDISYS HALAIIEAQS IQAHLFLDEI KQSQKEKKKF PTFKGGF // ID O25287_HELPY Unreviewed; 416 AA. AC O25287; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07632.1}; GN OrderedLocusNames=HP_0563 {ECO:0000313|EMBL:AAD07632.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07632.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07632.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07632.1; -; Genomic_DNA. DR PIR; C64590; C64590. DR RefSeq; NP_207358.1; NC_000915.1. DR RefSeq; WP_000996951.1; NC_018939.1. DR ProteinModelPortal; O25287; -. DR STRING; 85962.HP0563; -. DR PaxDb; O25287; -. DR EnsemblBacteria; AAD07632; AAD07632; HP_0563. DR GeneID; 900213; -. DR KEGG; heo:C694_02905; -. DR KEGG; hpy:HP0563; -. DR PATRIC; 20592399; VBIHelPyl33062_0588. DR OMA; NRFDFYY; -. DR OrthoDB; EOG6QCD60; -. DR BioCyc; HPY:HP0563-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 416 AA; 49076 MW; D535F0384B228B44 CRC64; MAINTFLKHS FLVCLLAVNS YAFDWNIFKY NLGFNMFIMD HEGSTPYWVN TNTNLKTRLT PNFGIQFYTR GVEQSLTVGA YFFQNFHNYS TNFPYRWGPT MYYKARGKRF TFYGGIFPRK NLLGRYGLNI FAPYYWFIDP NARGFLLQFQ NHYSPSKPYY GHAEFMLDWF GGNCYNTCKF GRNPYGNAMD RFQMNGSVAY NFFKDLLGIG GYFVLFHNED KYLLNGADGM QFNEKKAIDN SAIYLLDRLY YNAYISTSLL DIAPFMEKLS AKFGMVSEAS RLRNREKEVP FINSVGGQFD VEIQYKGFGI HNLFFFAKTP EMPFYNQYQY VEMYCTPSYC PTPIYRGVPF FQANMYNRFD FYYNWKNDFA SVRINFVLNA MRGGFDRSLP WSESYQVYMT VAFDPYNLIN KIARKK // ID O24856_HELPY Unreviewed; 23 AA. AC O24856; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07084.1}; GN OrderedLocusNames=HP_0007 {ECO:0000313|EMBL:AAD07084.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07084.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07084.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07084.1; -; Genomic_DNA. DR PIR; G64520; G64520. DR IntAct; O24856; 2. DR PRIDE; O24856; -. DR EnsemblBacteria; AAD07084; AAD07084; HP_0007. DR BioCyc; HPY:HP0007-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 23 AA; 2467 MW; D1AD1C72FBE3104F CRC64; MLMVTRVGFE PTAHSLKGNC STS // ID O26001_HELPY Unreviewed; 261 AA. AC O26001; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 114. DE SubName: Full=ABC transporter, ATP-binding protein (HI1087) {ECO:0000313|EMBL:AAD08506.1}; GN OrderedLocusNames=HP_1465 {ECO:0000313|EMBL:AAD08506.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08506.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08506.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08506.1; -; Genomic_DNA. DR PIR; A64703; A64703. DR RefSeq; NP_208256.1; NC_000915.1. DR RefSeq; WP_000994578.1; NC_018939.1. DR ProteinModelPortal; O26001; -. DR STRING; 85962.HP1465; -. DR PaxDb; O26001; -. DR EnsemblBacteria; AAD08506; AAD08506; HP_1465. DR GeneID; 899828; -. DR KEGG; heo:C694_07585; -. DR KEGG; hpy:HP1465; -. DR PATRIC; 20594341; VBIHelPyl33062_1539. DR eggNOG; ENOG4105DHJ; Bacteria. DR eggNOG; COG1127; LUCA. DR KO; K02065; -. DR OMA; KMWIERV; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP1465-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD08506.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD08506.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 247 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 261 AA; 29194 MW; 373B600E301CF48B CRC64; MNATNNQVLI EVKDLHSAFG STIIHRGVSF SVHKGEVMAI LGGSGSGKST LLRCMILLNR PTKGEVLLFG EDIWKLKEAE QQKIFNRCGI CFQFGALYSS LTVLENVGVM LEQYGAYSKK IVEEISKMWI EKVGLPPRAY HLYPYELSGG MKKRVGIARA MATNPEILFL DEPTSGLDPY SAGKFDELIM TLKESLQLTV VMITHDLDSV HDCVDRFIML KDGLLEFNGD LKDFIKKAQT QGLDEGNLFN STRGEKFWKG M // ID O25799_HELPY Unreviewed; 385 AA. AC O25799; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08233.1}; GN OrderedLocusNames=HP_1187 {ECO:0000313|EMBL:AAD08233.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08233.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08233.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08233.1; -; Genomic_DNA. DR PIR; C64668; C64668. DR RefSeq; NP_207978.1; NC_000915.1. DR RefSeq; WP_000446635.1; NC_018939.1. DR ProteinModelPortal; O25799; -. DR DIP; DIP-3762N; -. DR IntAct; O25799; 1. DR MINT; MINT-161535; -. DR STRING; 85962.HP1187; -. DR PaxDb; O25799; -. DR EnsemblBacteria; AAD08233; AAD08233; HP_1187. DR GeneID; 899949; -. DR KEGG; heo:C694_06145; -. DR KEGG; hpy:HP1187; -. DR PATRIC; 20593733; VBIHelPyl33062_1244. DR OMA; YIEQNCK; -. DR OrthoDB; EOG67MF0S; -. DR BioCyc; HPY:HP1187-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008592; DUF874. DR Pfam; PF05917; DUF874; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 76 99 {ECO:0000256|SAM:Coils}. FT COILED 162 196 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 385 AA; 43994 MW; BC59CA0442EB6832 CRC64; MESVKTGKTN KVGKNTEMAN TKANKEAHFK QASTITNIIR SIRGIFTKIA KKVRGLVKKH PKKSSAALVV LTHIACKKAK ELDDKVQDKS KQAEKENQIN WWKYSGLTIA TSLLLAACST GDVSEQIELE QEKQKTSNIE TNNQIKVEQE KQKTSNIETN NQIKVEQEQQ KTEQERQKTE QERQKTEQEK QKTIKTQKDF IKYVEQNCQE NHNQFFIEKG GIKAGIGIEV EAECKTPKPA KTNQTPIQPK HLPNSKQPRS QRGSKAQELI AYLQKELESL PYSQKAIAKQ VDFYRPSSIA YLELDPRDFN VTEEWQKENL KIRSKAQAKM LEMRSLKPDS QAHLSTSQSL LFVQKIFADV NKEIKVVANT EKKAEKAGYG YSKRM // ID O25973_HELPY Unreviewed; 72 AA. AC O25973; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Histidine and glutamine-rich protein {ECO:0000313|EMBL:AAD08472.1}; GN OrderedLocusNames=HP_1432 {ECO:0000313|EMBL:AAD08472.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08472.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08472.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08472.1; -; Genomic_DNA. DR PIR; H64698; H64698. DR ProteinModelPortal; O25973; -. DR IntAct; O25973; 2. DR STRING; 85962.HP1432; -. DR PaxDb; O25973; -. DR PRIDE; O25973; -. DR EnsemblBacteria; AAD08472; AAD08472; HP_1432. DR OMA; MAHHEQQ; -. DR BioCyc; HPY:HP1432-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 35 72 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 72 AA; 8779 MW; 1663F1CFCDE4760D CRC64; MAHHEQQQQQ QANSQHHHHH HAHHHHYYGG EHHHHNAQQH AEQQAEQQAQ QQQQQQAHQQ QQQKAQQQNQ QY // ID O25914_HELPY Unreviewed; 294 AA. AC O25914; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=4-hydroxybenzoate octaprenyltransferase (UbiA) {ECO:0000313|EMBL:AAD08400.1}; GN OrderedLocusNames=HP_1360 {ECO:0000313|EMBL:AAD08400.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08400.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08400.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08400.1; -; Genomic_DNA. DR PIR; H64689; H64689. DR RefSeq; NP_208152.1; NC_000915.1. DR RefSeq; WP_000913908.1; NC_018939.1. DR ProteinModelPortal; O25914; -. DR IntAct; O25914; 1. DR STRING; 85962.HP1360; -. DR PaxDb; O25914; -. DR EnsemblBacteria; AAD08400; AAD08400; HP_1360. DR GeneID; 900336; -. DR KEGG; heo:C694_07020; -. DR KEGG; hpy:HP1360; -. DR PATRIC; 20594107; VBIHelPyl33062_1424. DR eggNOG; ENOG4107U18; Bacteria. DR eggNOG; COG0382; LUCA. DR KO; K03179; -. DR OMA; IDRHIDA; -. DR OrthoDB; EOG680X3B; -. DR BioCyc; HPY:HP1360-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004659; F:prenyltransferase activity; IEA:InterPro. DR InterPro; IPR006371; HB_polyprenyl-transferase-rel. DR InterPro; IPR000537; UbiA_prenyltransferase. DR Pfam; PF01040; UbiA; 1. DR TIGRFAMs; TIGR01475; ubiA_other; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08400.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 49 71 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 92 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 118 136 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 163 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 191 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 237 257 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 269 291 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 294 AA; 32901 MW; D9FA4E63A815D7AF CRC64; MLKKITHKIK ALSELVALEH TIFSSMFLLM AMVISSYQKN QTVFFGLETL ILCFLALLGA RNFAMGFNRL VDRDIDKDNP RTKNRPSVDG RISVKGMVVF SALNALLFVV VSYFINPLAF KLSLPFLIVL GGYSYFKRFS SLAHFIVGLA LGLAPIAGSV AVLGDIPLWN VFLALGVMLW VAGFDLLYSL QDMEFDKERG LFSIPSQLGE KWCLNLSRLS HLVALMCWLC FVKCYHGGFF AYLGLGVSAL ILLYEQILVA RDYKNIPKAF FVSNGYLGVV FFIFIVLDVG FKHA // ID O26000_HELPY Unreviewed; 271 AA. AC O26000; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08505.1}; GN OrderedLocusNames=HP_1464 {ECO:0000313|EMBL:AAD08505.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08505.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08505.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08505.1; -; Genomic_DNA. DR PIR; H64702; H64702. DR RefSeq; NP_208255.1; NC_000915.1. DR RefSeq; WP_000439508.1; NC_018939.1. DR ProteinModelPortal; O26000; -. DR DIP; DIP-3574N; -. DR IntAct; O26000; 15. DR MINT; MINT-162293; -. DR STRING; 85962.HP1464; -. DR PaxDb; O26000; -. DR EnsemblBacteria; AAD08505; AAD08505; HP_1464. DR GeneID; 899829; -. DR KEGG; heo:C694_07580; -. DR KEGG; hpy:HP1464; -. DR PATRIC; 20594339; VBIHelPyl33062_1538. DR eggNOG; ENOG4108SNX; Bacteria. DR eggNOG; COG1463; LUCA. DR KO; K02067; -. DR OMA; TLTERMS; -. DR OrthoDB; EOG686NMB; -. DR BioCyc; HPY:HP1464-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR003399; Mce/MlaD. DR Pfam; PF02470; MlaD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 28 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 38 116 MlaD. {ECO:0000259|Pfam:PF02470}. SQ SEQUENCE 271 AA; 30489 MW; 9F3209774B502A8B CRC64; MERHVNYTLI GGLFFLCLVC MVGFILWLGH LGLDDGKYYE YVVYTDKDLG GIATNSPINY KGIQVGNVIK VGFAKDKVGV VRLDLMIKSS VKIRKDSKVA VSSRGFMGLK FLALEQSHNE EFYGSGDKGE RILIFKEGLM DRLSGDANQV VQEVMKAIRN VNRILDDENV EKFKHILASV DDLIANLDSR KTQFDSLISN ANNLVSNVNN VALDVDKRLK QGQYDFKAMF TPLIMQAQLS LRNIDNFVEK GSALIDKFDA NPYKTIFGER K // ID O25313_HELPY Unreviewed; 186 AA. AC O25313; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:AAD07656.1}; GN OrderedLocusNames=HP_0591 {ECO:0000313|EMBL:AAD07656.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07656.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07656.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07656.1; -; Genomic_DNA. DR PIR; G64593; G64593. DR RefSeq; NP_207386.1; NC_000915.1. DR RefSeq; WP_000388051.1; NC_018939.1. DR ProteinModelPortal; O25313; -. DR DIP; DIP-3451N; -. DR IntAct; O25313; 5. DR MINT; MINT-162176; -. DR STRING; 85962.HP0591; -. DR PaxDb; O25313; -. DR EnsemblBacteria; AAD07656; AAD07656; HP_0591. DR GeneID; 900027; -. DR KEGG; heo:C694_03050; -. DR KEGG; hpy:HP0591; -. DR PATRIC; 20592459; VBIHelPyl33062_0618. DR eggNOG; ENOG4108ZHB; Bacteria. DR eggNOG; COG1014; LUCA. DR KO; K00177; -. DR OMA; IDYPKVQ; -. DR OrthoDB; EOG6HJ26D; -. DR BioCyc; HPY:HP0591-MONOMER; -. DR BioCyc; MetaCyc:HP0591-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016903; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors; IEA:InterPro. DR Gene3D; 3.40.920.10; -; 1. DR InterPro; IPR019752; Pyrv/ketoisovalerate_OxRed_cat. DR InterPro; IPR002869; Pyrv_flavodox_OxRed_cen. DR Pfam; PF01558; POR; 1. DR SUPFAM; SSF53323; SSF53323; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 11 174 POR. {ECO:0000259|Pfam:PF01558}. SQ SEQUENCE 186 AA; 20257 MW; BDC1B8D2B2F9E55B CRC64; MEAQLRFTGV GGQGVLLAGE ILAEAKIVSG GYGTKTSTYT SQVRGGPTKV DILLDRDEII FPYAKEGEID FMLSVAQISY NQFKSDIKQG GIVVIDPNLV TPTKEDEEKY QIYKIPIISI AKDEVGNIIT QSVVALAITV ELTKCVEEII VLDTMLKKVP AKVADTNKKA FEIGKKHALE ALKVRA // ID O25037_HELPY Unreviewed; 142 AA. AC O25037; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07334.1}; GN OrderedLocusNames=HP_0256 {ECO:0000313|EMBL:AAD07334.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07334.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07334.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07334.1; -; Genomic_DNA. DR PIR; H64551; H64551. DR RefSeq; NP_207054.1; NC_000915.1. DR RefSeq; WP_000712783.1; NC_018939.1. DR ProteinModelPortal; O25037; -. DR STRING; 85962.HP0256; -. DR PaxDb; O25037; -. DR EnsemblBacteria; AAD07334; AAD07334; HP_0256. DR GeneID; 899183; -. DR KEGG; heo:C694_01295; -. DR KEGG; hpy:HP0256; -. DR PATRIC; 20591739; VBIHelPyl33062_0267. DR OMA; AMILHWQ; -. DR OrthoDB; EOG6ZH2KM; -. DR BioCyc; HPY:HP0256-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009288; C:bacterial-type flagellum; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR InterPro; IPR012823; Flagell_FliJ. DR Pfam; PF02050; FliJ; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 16 43 {ECO:0000256|SAM:Coils}. FT COILED 65 127 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 142 AA; 16736 MW; F4C50D11CAE961EA CRC64; MKKFASVLVQ LKTLALEKIE QKLESKRLEL QQNEREVLDK QAQLSAFKNP ELGGMSLFLQ TQQLKSALRM EIEYYQQESE NLNKDLKILE KDYLLANQEL EKAKIILEKE KQKEQKILEK KEQALLDENA MILHWQKEGL HA // ID O25950_HELPY Unreviewed; 842 AA. AC O25950; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Iron(III) dicitrate transport protein (FecA) {ECO:0000313|EMBL:AAD08443.1}; GN OrderedLocusNames=HP_1400 {ECO:0000313|EMBL:AAD08443.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08443.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08443.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08443.1; -; Genomic_DNA. DR PIR; H64694; H64694. DR RefSeq; NP_208191.1; NC_000915.1. DR RefSeq; WP_000902542.1; NC_000915.1. DR ProteinModelPortal; O25950; -. DR DIP; DIP-3414N; -. DR IntAct; O25950; 2. DR MINT; MINT-182187; -. DR STRING; 85962.HP1400; -. DR PaxDb; O25950; -. DR PRIDE; O25950; -. DR EnsemblBacteria; AAD08443; AAD08443; HP_1400. DR GeneID; 899896; -. DR KEGG; hpy:HP1400; -. DR PATRIC; 20594189; VBIHelPyl33062_1465. DR eggNOG; ENOG4108ENF; Bacteria. DR eggNOG; COG4772; LUCA. DR KO; K16091; -. DR OMA; NSAAGGY; -. DR OrthoDB; EOG6G7QZW; -. DR BioCyc; HPY:HP1400-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR Gene3D; 2.40.170.20; -; 3. DR InterPro; IPR012910; Plug_dom. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF07715; Plug; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 66 179 Plug. {ECO:0000259|Pfam:PF07715}. SQ SEQUENCE 842 AA; 94827 MW; C5A3640796F784F3 CRC64; MLHKKVLLAL TASLICQESL FAKEKDYTLG KVSTAGKKDR SDYSGQVNLG YSGITAPKSW QDEEVKKYTG SRTVISNKAL TQQANQSIEE ALQNVPGLQI RNATGVGAMP TIQIRGFGAG GSGHSDATLM LVNGIPVYMA PYAHIELDIF PVTFQAIDRI DVIKGGGSVQ YGPNTYGGIV NIITKPIPNQ WENQAAERIT YWAKARNAGF AAPPDKTGDP SFIKSLGNNL LYNTYVRSGG MINKHVGIQA QANWVRGQGF RDNSPSNISN YWLDGVYDIN ENNGIKAYYQ YYDFAIAQPG SLSEQDYKIN RFANLRPLNQ KGGRSQRFGA VYENRFGDLD KVGGTFSFTY YGQLMTRDFQ VSSSYNSANM VTCFSEAACR AAGLPAGYNL AVPYYATNYN GWAEVENPVR SINNAFEPKV NLIVNTGKVK QTFIMGLRFM TTTFLQRQYL NTNECATKTS GEGAGFLCEG ANVMSGWKPH IKHGVYRNWN NWRNNYTAVY LSDRIEAWDG RFFIVPGLRY AFVQYNNENA SNWMQIPEKD LRKIKHMNNW MPSTNIGFIP VQGDHNVLTY FNYQRSFVPP QLDVLSYGGA EYFTQHFDTV EAGARYTYKD KFSFNADYFR IWARDFATGQ YSVYTSGPMK GNVRPINGYS QGVELELYYR PIRGLQFHAA FNYIDTRVTS HGPLTDLNGD VLKGTSYNKH FPFVSPFQFI LDARYNWRKT TIGISSYFYS RAYSGISNSA AGGYYGMQYY SGGNNYESVL NSGYQCEAWC MTQHEGLLPW YWVWNIQVSQ IFWENGRHRV TGSLQINNIF NMKYYFTGIG SSPAGLQPAP GRSVTAYLNY TF // ID O25190_HELPY Unreviewed; 88 AA. AC O25190; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07509.1}; GN OrderedLocusNames=HP_0442 {ECO:0000313|EMBL:AAD07509.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07509.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07509.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07509.1; -; Genomic_DNA. DR PIR; B64575; B64575. DR RefSeq; NP_207240.1; NC_000915.1. DR RefSeq; WP_001173702.1; NC_018939.1. DR ProteinModelPortal; O25190; -. DR IntAct; O25190; 1. DR STRING; 85962.HP0442; -. DR PaxDb; O25190; -. DR EnsemblBacteria; AAD07509; AAD07509; HP_0442. DR GeneID; 898864; -. DR KEGG; heo:C694_02245; -. DR KEGG; hpy:HP0442; -. DR PATRIC; 20592143; VBIHelPyl33062_0460. DR OMA; AMGLMAS; -. DR OrthoDB; EOG64XXR4; -. DR BioCyc; HPY:HP0442-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 88 AA; 10177 MW; 2708E4DCEB65B083 CRC64; MALHIVCVES INIREISKRE TFLGLNLDSW IVSFLMSAWL LSFQPLYAMG LMASCVFIFY ILEFFDEDIT AILHALFTLR TGARNYYA // ID O25802_HELPY Unreviewed; 349 AA. AC O25802; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=ADP-heptose-lps heptosyltransferase II (RfaF) {ECO:0000313|EMBL:AAD08237.1}; GN OrderedLocusNames=HP_1191 {ECO:0000313|EMBL:AAD08237.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08237.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08237.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08237.1; -; Genomic_DNA. DR PIR; G64668; G64668. DR RefSeq; NP_207982.1; NC_000915.1. DR RefSeq; WP_000115493.1; NC_018939.1. DR ProteinModelPortal; O25802; -. DR STRING; 85962.HP1191; -. DR CAZy; GT9; Glycosyltransferase Family 9. DR PaxDb; O25802; -. DR EnsemblBacteria; AAD08237; AAD08237; HP_1191. DR GeneID; 899953; -. DR KEGG; heo:C694_06165; -. DR KEGG; hpy:HP1191; -. DR PATRIC; 20593741; VBIHelPyl33062_1248. DR eggNOG; ENOG4105XA0; Bacteria. DR eggNOG; COG0859; LUCA. DR KO; K02843; -. DR OMA; IAFCPGA; -. DR OrthoDB; EOG64N9TX; -. DR BioCyc; HPY:HP1191-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:InterPro. DR InterPro; IPR002201; Glyco_trans_9. DR InterPro; IPR011910; LipoPS_heptosylTferase-II. DR Pfam; PF01075; Glyco_transf_9; 1. DR TIGRFAMs; TIGR02195; heptsyl_trn_II; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08237.1}. SQ SEQUENCE 349 AA; 39447 MW; 3C99958267C00E2B CRC64; MSVNAPKRMR ILLRLPNWLG DGVMASSLFY TLKHHYPNAH FILVGPTITC ELFKKDEKIE AVFIDNTKKS FFRLLAIHKL AQKIGRCDIA ITLNNHFYSA FLLYATKTPV RIGFAQFFRS LFLSHAIAPA PKEYHQVEKY CFLFSQFLEK ELDQKSVLPL KLAFNLPTHT PNTPKKIGFN PSASYGSAKR WPASYYAEVS AVLLEKGHEI YFFGAKEDAI VSEEILKLIK GSLKNPSLFH NAYNLCGKTS IEELIERIAV LDLFITNDSG PMHVAASMQT PLIALFGPTD EKETRPYKAQ KTIVLNHHLS CAPCKKRVCP LKNAKNHLCM KSITPLEVLE AAHTLLEEP // ID O25875_HELPY Unreviewed; 132 AA. AC O25875; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08364.1}; GN OrderedLocusNames=HP_1288 {ECO:0000313|EMBL:AAD08364.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08364.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08364.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08364.1; -; Genomic_DNA. DR PIR; H64680; H64680. DR RefSeq; NP_208080.1; NC_000915.1. DR RefSeq; WP_010875610.1; NC_000915.1. DR ProteinModelPortal; O25875; -. DR STRING; 85962.HP1288; -. DR PaxDb; O25875; -. DR PRIDE; O25875; -. DR EnsemblBacteria; AAD08364; AAD08364; HP_1288. DR GeneID; 899035; -. DR KEGG; hpy:HP1288; -. DR PATRIC; 20593957; VBIHelPyl33062_1349. DR OMA; GHEIGRE; -. DR OrthoDB; EOG6GTZQ4; -. DR BioCyc; HPY:HP1288-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 132 AA; 13776 MW; E9E00A21AA484EF3 CRC64; MCQTCLETQF LNLNFMKGFV MSGLKAFSCV VVLCGAMANT AIAGPKIEAR GEFGRFWGGA VGGAIGGGVG GAVGGAVGGP AGGWAGRLVG GSVGREFGRE IGDRVEDYIR GVDREPQAPR EPTYDRHFVY DR // ID O25717_HELPY Unreviewed; 171 AA. AC O25717; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08135.1}; GN OrderedLocusNames=HP_1085 {ECO:0000313|EMBL:AAD08135.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08135.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08135.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08135.1; -; Genomic_DNA. DR PIR; E64655; E64655. DR RefSeq; NP_207876.1; NC_000915.1. DR RefSeq; WP_000523527.1; NC_018939.1. DR ProteinModelPortal; O25717; -. DR STRING; 85962.HP1085; -. DR PaxDb; O25717; -. DR EnsemblBacteria; AAD08135; AAD08135; HP_1085. DR GeneID; 899621; -. DR KEGG; heo:C694_05605; -. DR KEGG; hpy:HP1085; -. DR PATRIC; 20593509; VBIHelPyl33062_1134. DR eggNOG; ENOG4106Y3B; Bacteria. DR eggNOG; ENOG410YTQ0; LUCA. DR OMA; TYYDHEY; -. DR OrthoDB; EOG6GJBTF; -. DR BioCyc; HPY:HP1085-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 171 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157759. SQ SEQUENCE 171 AA; 19691 MW; 859CFE81CCB4DC7A CRC64; MGLKNLSTLL VFLFFCLGCV SNFNEDTYTL DLVLEKKIQA SRKGEITQDN VPIITAIATH LNDVDSGTYY DHEYFLVEIF TQNNDWIDDG YISYELFGTK PIGSEPLWVR EITKDEFDGI LETTNRWSRA FLLAFNKLDY LAVQEAKLEL DAYSLGKIVF NFAYQVPLPQ F // ID O25813_HELPY Unreviewed; 240 AA. AC O25813; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08259.1}; GN OrderedLocusNames=HP_1214 {ECO:0000313|EMBL:AAD08259.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08259.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08259.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08259.1; -; Genomic_DNA. DR PIR; F64671; F64671. DR RefSeq; NP_208006.1; NC_000915.1. DR RefSeq; WP_001225412.1; NC_000915.1. DR ProteinModelPortal; O25813; -. DR IntAct; O25813; 3. DR STRING; 85962.HP1214; -. DR PaxDb; O25813; -. DR PRIDE; O25813; -. DR DNASU; 900360; -. DR EnsemblBacteria; AAD08259; AAD08259; HP_1214. DR GeneID; 900360; -. DR KEGG; hpy:HP1214; -. DR PATRIC; 20593801; VBIHelPyl33062_1271. DR eggNOG; ENOG4108266; Bacteria. DR eggNOG; COG1926; LUCA. DR KO; K07100; -. DR OMA; ECPAYLI; -. DR OrthoDB; EOG6KDKPP; -. DR BioCyc; HPY:HP1214-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.2020; -; 2. DR InterPro; IPR029057; PRTase-like. DR SUPFAM; SSF53271; SSF53271; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 240 AA; 27376 MW; 81229484E4408E68 CRC64; MRKGMHLNTD FSHITDIEGM RFINEEDALN KLINEIHTRH IDLKDSIMLA LSFNALYLAH ALAQKFGATY DILFLEPILA PLNSKCEIAL VSESMDIVMN ESLINSFDIT LDYVYGEAKR AYEEDILSHI YQYRKGNAIK SLKDKNIFIV DRGIETGFRA GLGVQTCLKK ECQDIYILTP IVAQNVAQGL ESLCDGVISV YRPECFVSVE HHYKELKRLS NEEVEKYLGA NNMPNLKKEH // ID O25086_HELPY Unreviewed; 745 AA. AC O25086; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp9) {ECO:0000313|EMBL:AAD07380.1}; GN OrderedLocusNames=HP_0317 {ECO:0000313|EMBL:AAD07380.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07380.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07380.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07380.1; -; Genomic_DNA. DR PIR; E64559; E64559. DR RefSeq; NP_207115.1; NC_000915.1. DR RefSeq; WP_000716253.1; NC_018939.1. DR ProteinModelPortal; O25086; -. DR DIP; DIP-3060N; -. DR IntAct; O25086; 8. DR MINT; MINT-185029; -. DR STRING; 85962.HP0317; -. DR PaxDb; O25086; -. DR EnsemblBacteria; AAD07380; AAD07380; HP_0317. DR GeneID; 898795; -. DR KEGG; heo:C694_01605; -. DR KEGG; hpy:HP0317; -. DR PATRIC; 20591865; VBIHelPyl33062_0330. DR OMA; AQAEMFN; -. DR OrthoDB; EOG6C5RJT; -. DR BioCyc; HPY:HP0317-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 745 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158547. SQ SEQUENCE 745 AA; 81162 MW; 79EE686CCA7EC124 CRC64; MKKHILSLAL GSLLVSTLSA EDDGFYTSVG YQIGEAAQMV TNTKGIQQLS DNYENLNNLL TRYSTLNTLI KLSADPSAIN AVRENLGAST KNLIGDKANS PAYQAVFLAI NAAVGLWNTI GYAVMCGNGN GTESGPGSVI FNDQPGQDST QITCNRFEST GPGKSMSIDE FKKLNEAYQI IQQALKNQSG FPELGGNGTK VSVNYNYECR QTADINGGVY QFCKAKNGSS SSSNGGNGSS TQTTATTTQD GVTITTTYNN NKATVKFDIT NNAEQLLNQA ANIMQVLNTQ CPLVRSTNNE NTPGGGQPWG LSTSGNACSI FQQEFSQVTS MIKNAQEIIA QSKIVSENAQ NQNNLDTGKP FNPYTDASFA QSMLKNAQAQ AEMFNLSEQV KKNLEVMKNN NNVNEKLAGF GKEEVMTNFV SAFLASCKDG GTLPNAGVTS NTWGAGCAYV GETISALTNS IAHFGTQEQQ IQQAENIADT LVNFKSRYSE LGNTYNSITT ALSKVPNAQS LQNVVSKKNN PYSPQGIETN YYLNQNSYNQ IQTINQELGR NPFRKVGIVN SQTNNGAMNG IGIQVGYKQF FGQKRKWGAR YYGFFDYNHA FIKSSFFNSA SDVWTYGFGA DALYNFINDK ATNFLGKNNK LSLGLFGGIA LAGTSWLNSE YVNLATVNNV YNAKMNVANF QFLFNMGVRM NLARSKKKGS DHAAQHGIEL GLKIPTINTN YYSFMGAELK YRRLYSVYLN YVFAY // ID O25133_HELPY Unreviewed; 236 AA. AC O25133; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07438.1}; GN OrderedLocusNames=HP_0369 {ECO:0000313|EMBL:AAD07438.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07438.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07438.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07438.1; -; Genomic_DNA. DR PIR; A64566; A64566. DR ProteinModelPortal; O25133; -. DR STRING; 85962.HP0369; -. DR REBASE; 4618; M.HpyAORF369P. DR PaxDb; O25133; -. DR PRIDE; O25133; -. DR EnsemblBacteria; AAD07438; AAD07438; HP_0369. DR PATRIC; 20591973; VBIHelPyl33062_0380. DR OMA; WTKINTF; -. DR OrthoDB; EOG644ZKQ; -. DR BioCyc; HPY:HP0369-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 236 AA; 27793 MW; 1B657F4DC427E8F8 CRC64; MKLLKNTKIQ MTFYKLPTHQ KVICLGNPPF GHRGVMALEF INHARSCDFV CFILPMFFES QGKGSIKYRV KGLNLLYSER LEKNAFIDFK NKEVDVHCVF QIWSKKYQNK KSEFSWYKNR HKEPFSEYIK VFTVSLAKNR ECGKEWIFNQ KASFYISSTF YKSTQIVENF EEVKYKSGIA VVFTSTNKAL NTKLKKLFKE IDWTKYASLA TNSCYHLGKS HIFQALYDHL DSLKDN // ID O25670_HELPY Unreviewed; 391 AA. AC O25670; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 96. DE SubName: Full=Conserved hypothetical helicase-like protein {ECO:0000313|EMBL:AAD08068.1}; GN OrderedLocusNames=HP_1026 {ECO:0000313|EMBL:AAD08068.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08068.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08068.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08068.1; -; Genomic_DNA. DR PIR; B64648; B64648. DR RefSeq; NP_207816.1; NC_000915.1. DR RefSeq; WP_000060246.1; NC_018939.1. DR ProteinModelPortal; O25670; -. DR DIP; DIP-3071N; -. DR IntAct; O25670; 4. DR MINT; MINT-172567; -. DR STRING; 85962.HP1026; -. DR PaxDb; O25670; -. DR EnsemblBacteria; AAD08068; AAD08068; HP_1026. DR GeneID; 899561; -. DR KEGG; heo:C694_05310; -. DR KEGG; hpy:HP1026; -. DR PATRIC; 20593389; VBIHelPyl33062_1075. DR eggNOG; ENOG4105D1H; Bacteria. DR eggNOG; COG2256; LUCA. DR KO; K07478; -. DR OMA; YRYDHDE; -. DR OrthoDB; EOG64FKG0; -. DR BioCyc; HPY:HP1026-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009378; F:four-way junction helicase activity; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR032423; AAA_assoc_2. DR InterPro; IPR008921; DNA_pol3_clamp-load_cplx_C. DR InterPro; IPR021886; MgsA_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR008824; RuvB_N. DR Pfam; PF16193; AAA_assoc_2; 1. DR Pfam; PF12002; MgsA_C; 1. DR Pfam; PF05496; RuvB_N; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF48019; SSF48019; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD08068.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Helicase {ECO:0000313|EMBL:AAD08068.1}; KW Hydrolase {ECO:0000313|EMBL:AAD08068.1}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD08068.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 36 295 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 391 AA; 43793 MW; 5B603247679DFB67 CRC64; MSLTSLLNPK SLEDFLGQEH LVGKDAPLFK ALQSKHFPHA FFYGPPGVGK TSLAQIIAYM LERPILLFNA TDFKLEDLRL KLKNYQNTLL KPVVFIDETH RLNKTQQEFL LPIMEKDHAL ILGASTQDPN YSLSHAIRSR SFIFELTPLN KSDLDRLCAK ALTLLKKQIE PGAKTYLLNN SAGDARALLN LLDLSAKIED PITLKTLQSL RPHSLNDGSY SDDTHYNLTS ALIKSLRGSD ENASIYYLAR LIAGGENPEF IARRLVIFAS EDIGNANPNA LNLAASCLFA VKQIGYPEAR IILSQCVIYL ACSPKSNTAY RAINQALDCV QKGSLYPIPK HLLPNAKDYL YPHDYNGYVK QDYLEKPLDL VSSQGIGFEK TLLEWLDKIR N // ID O25772_HELPY Unreviewed; 1230 AA. AC O25772; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Outer membrane protein (Omp26) {ECO:0000313|EMBL:AAD08205.1}; GN OrderedLocusNames=HP_1157 {ECO:0000313|EMBL:AAD08205.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08205.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08205.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC P0A0V6:hpn; NbExp=3; IntAct=EBI-7500169, EBI-7512037; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08205.1; -; Genomic_DNA. DR PIR; E64664; E64664. DR RefSeq; NP_207948.1; NC_000915.1. DR RefSeq; WP_000591296.1; NC_018939.1. DR ProteinModelPortal; O25772; -. DR DIP; DIP-3183N; -. DR IntAct; O25772; 9. DR MINT; MINT-162488; -. DR STRING; 85962.HP1157; -. DR PaxDb; O25772; -. DR EnsemblBacteria; AAD08205; AAD08205; HP_1157. DR GeneID; 899917; -. DR KEGG; heo:C694_05975; -. DR KEGG; hpy:HP1157; -. DR PATRIC; 20593665; VBIHelPyl33062_1211. DR OMA; YQLINTI; -. DR OrthoDB; EOG6GBM69; -. DR BioCyc; HPY:HP1157-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 1010 1037 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1230 AA; 131848 MW; 4BF1506F1E072410 CRC64; MIKKARKFIP FFLIGSLLAE DNGWYMSVGY QIGGTQQFIN NKQLLENQNI INSVTQSAIN IAGPTTGLIT LSSQTVIDAL GYGVSNTVGN QLEGISNILN QIGKRKDFYS SRQISSISQQ IIGLKGSSDP LKAHSSQITA KLLSNTQSAF DQGIALSTNI ISSINSLNPS NNTQEVKKQL QNTAQSMTEL LQQIEHSITK TTSTTYAQSL LSNLTDAVNA SSNNTAYVSA LVNALNTLGV GVFPTTTTTH VVLNPPGQVV FYPTNSILGS TSSNSNNQQQ YNNTLLMNTL QGTLSANTQN NPNGCANQVQ CLEQFIQNLA PLAATPTSNN QANQQVQAIA QKLQSVAINT LDNNAINNTT YNLNNLHNAL NFQAYESTIE QYNNALKQIS WISFTEPKNL LKNTSNNYQI GTVTNAQGQN ISAYDCMTAT GSLSSNASSG ISCSATSSTS STNSFDNSLV ATSKVQTING KEQIGVNSFN LVSQVWSVYN SLKTSEENLQ KNANILCANG TQSGTSSCNS SSGGLSISGN AQLQNILSPT SGTTTNTQAK SNAPKLKAMV VVNNEEEAKT ANLAQSSGTT TQSPNSTVMG ALNTVLQNVS NFQQSIQNAF QNQESNIQAW ANAIYNTNGS QSQEMTPNNN QDLRIQLRAN FYQLINTINQ QVPTDMNALI NQSQQTQQTS GSASNNNACA SGMSGSNGNW CYQQWSDSKA YYSGLQSALG YQTQATTQSG SNGGNSITYN VQQITLTSNG LLNQIITNLK SVNGGNGASG TGSGNGTSQI NTAYQMLTDA SDGKLGTYSS SSGSNNGYTP CNSTNGSNKT SGNNCYEPNK QQNATTATAT TDSNLQKVYN DAQKIANIIA SSGNNKGVEN GLKQFFEALK NNSSSLSNLC GNGSSGSSGT TCSGWLINLL GAIPTNGVSD TNNLINLLTE FIKTAGFIQN NDSSVSTSLT SAFQAITSAI SQGFQALQND ISPNAILTLL QEITSNTTTI QSFSQTLRQL LGDKTFFMAQ QKLIDAMINA RNQVQNAQNQ ANNYGSQPVL SQYAAAKSTQ HGMSNGLGVG LGYKYFFGKA RKLGLRHYFF FDYGFSEIGL ANQSVKANIF AYGVGTDFLW NLFRRTYNTK ALNFGLFAGV QLGGATWLSS LRQQIIDNWG SANDIHSTNF QVALNFGVRT NFAEFKRFAK KFHNQGVISQ KSVEFGIKVP LINQAYLNSA GADVSYRRLY TFYINYIMGF // ID O25465_HELPY Unreviewed; 363 AA. AC O25465; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07825.1}; GN OrderedLocusNames=HP_0773 {ECO:0000313|EMBL:AAD07825.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07825.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07825.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07825.1; -; Genomic_DNA. DR PIR; E64616; E64616. DR RefSeq; NP_207566.1; NC_000915.1. DR RefSeq; WP_000255244.1; NC_018939.1. DR ProteinModelPortal; O25465; -. DR STRING; 85962.HP0773; -. DR PaxDb; O25465; -. DR EnsemblBacteria; AAD07825; AAD07825; HP_0773. DR GeneID; 899340; -. DR KEGG; heo:C694_03970; -. DR KEGG; hpy:HP0773; -. DR PATRIC; 20592835; VBIHelPyl33062_0806. DR eggNOG; ENOG4107QWG; Bacteria. DR eggNOG; COG2070; LUCA. DR KO; K00459; -. DR OMA; SNCVSPC; -. DR OrthoDB; EOG6C013S; -. DR BioCyc; HPY:HP0773-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0018580; F:nitronate monooxygenase activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR004136; NMO. DR Pfam; PF03060; NMO; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 7 362 NMO. {ECO:0000259|Pfam:PF03060}. SQ SEQUENCE 363 AA; 39592 MW; C14BCA67FFD7FE5D CRC64; MVSTLKPLKI GKHTIKFPIF QGGMGVGISW DELAGNVAKE GALGVISAVG TGYYKNMRFV ERIVAKKPFE ALNFYSKKAL NEIFANARKI CGNNPLGANI LYAINDYGRV LRDSCEAGAN IIITGAGLPT NMPEFAKDFS DVALIPIISS AKALKILCKR WSDRYKRIPD AFIVEGPLSG GHQGFKYEDC FKEEFRLENL VPKVVEASKE WGNIPIIAAG GIWDRKDIDT MLSLGASGVQ MATRFLGTKE CDAKVYADLL PTLKKEDILL IKSPVGYPAR AINTGVIKRI EEGNAPKIAC VSNCVAPCNR GEEAKKVGYC IADGLGRSYL GNREEGLYFT GANGYRVDKI ISVHELIKEL TEG // ID O25024_HELPY Unreviewed; 131 AA. AC O25024; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07311.1}; GN OrderedLocusNames=HP_0241 {ECO:0000313|EMBL:AAD07311.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07311.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07311.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07311.1; -; Genomic_DNA. DR PIR; A64550; A64550. DR RefSeq; NP_207039.1; NC_000915.1. DR RefSeq; WP_001004080.1; NC_018939.1. DR ProteinModelPortal; O25024; -. DR DIP; DIP-3287N; -. DR IntAct; O25024; 13. DR MINT; MINT-161331; -. DR STRING; 85962.HP0241; -. DR PaxDb; O25024; -. DR EnsemblBacteria; AAD07311; AAD07311; HP_0241. DR GeneID; 899175; -. DR KEGG; heo:C694_01220; -. DR KEGG; hpy:HP0241; -. DR PATRIC; 20591707; VBIHelPyl33062_0252. DR eggNOG; ENOG4106APR; Bacteria. DR eggNOG; ENOG410XYD7; LUCA. DR OMA; PYQFILY; -. DR OrthoDB; EOG69GZM7; -. DR BioCyc; HPY:HP0241-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 131 AA; 15480 MW; AE8E781F51C3DB0B CRC64; MNELIRYGLI FLFFLKAFGL DYGIDKTLEL KKDEVFKAII KDTSNEQTKE ITLYWTLYAN KGLVINMRFN HFPYQFILYT DHARNTYNLK VFEEKFSSNS TLSLVFKDFK EDKAALRLLA LMPLVFSPKE P // ID O25634_HELPY Unreviewed; 35 AA. AC O25634; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08041.1}; GN OrderedLocusNames=HP_0984 {ECO:0000313|EMBL:AAD08041.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08041.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08041.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08041.1; -; Genomic_DNA. DR PIR; H64642; H64642. DR RefSeq; WP_000417515.1; NC_018939.1. DR ProteinModelPortal; O25634; -. DR PaxDb; O25634; -. DR EnsemblBacteria; AAD08041; AAD08041; HP_0984. DR KEGG; heo:C694_05075; -. DR PATRIC; 20593291; VBIHelPyl33062_1027. DR OrthoDB; EOG69D3PJ; -. DR BioCyc; HPY:HP0984-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 35 AA; 4377 MW; 4AB73FDDEECA2835 CRC64; MEKYNDKMKE VLNDELTYYL NKTIKEWVYN INYGL // ID O25174_HELPY Unreviewed; 142 AA. AC O25174; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07490.1}; GN OrderedLocusNames=HP_0420 {ECO:0000313|EMBL:AAD07490.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07490.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07490.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07490.1; -; Genomic_DNA. DR PIR; D64572; D64572. DR RefSeq; NP_207218.1; NC_000915.1. DR RefSeq; WP_001158310.1; NC_018939.1. DR ProteinModelPortal; O25174; -. DR DIP; DIP-3723N; -. DR IntAct; O25174; 1. DR MINT; MINT-163635; -. DR STRING; 85962.HP0420; -. DR PaxDb; O25174; -. DR EnsemblBacteria; AAD07490; AAD07490; HP_0420. DR GeneID; 899235; -. DR KEGG; heo:C694_02140; -. DR KEGG; hpy:HP0420; -. DR PATRIC; 20592091; VBIHelPyl33062_0435. DR eggNOG; ENOG4105KH8; Bacteria. DR eggNOG; COG2050; LUCA. DR OMA; KFNFKED; -. DR OrthoDB; EOG6CZQKF; -. DR BioCyc; HPY:HP0420-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR029069; HotDog_dom. DR InterPro; IPR006683; Thioestr_dom. DR Pfam; PF03061; 4HBT; 1. DR SUPFAM; SSF54637; SSF54637; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 50 119 4HBT. {ECO:0000259|Pfam:PF03061}. SQ SEQUENCE 142 AA; 16130 MW; F87820334B1D9FC9 CRC64; MQESVVRVDY DSLETCKNFK PSVGTELIVL EKDIAHARFK GNESMVYEEN FVHAGFVLIA CNYAALCALN KRHSVVVSNN INFYAPLELN QEALIKAQVI QDGVKKAEIK IEAFVLDIQV LEGMIEIVVF DKKPFKFNFK EE // ID O25494_HELPY Unreviewed; 255 AA. AC O25494; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Thiamin biosynthesis protein (ThiF) {ECO:0000313|EMBL:AAD07863.1}; GN OrderedLocusNames=HP_0814 {ECO:0000313|EMBL:AAD07863.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07863.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07863.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07863.1; -; Genomic_DNA. DR PIR; F64621; F64621. DR RefSeq; NP_207607.1; NC_000915.1. DR RefSeq; WP_000952609.1; NC_018939.1. DR ProteinModelPortal; O25494; -. DR IntAct; O25494; 1. DR STRING; 85962.HP0814; -. DR PaxDb; O25494; -. DR EnsemblBacteria; AAD07863; AAD07863; HP_0814. DR GeneID; 899969; -. DR KEGG; heo:C694_04170; -. DR KEGG; hpy:HP0814; -. DR PATRIC; 20592915; VBIHelPyl33062_0846. DR eggNOG; ENOG4105D06; Bacteria. DR eggNOG; COG0476; LUCA. DR OMA; TRFLVND; -. DR OrthoDB; EOG628F8J; -. DR BioCyc; HPY:HP0814-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008641; F:small protein activating enzyme activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000594; ThiF_NAD_FAD-bd. DR Pfam; PF00899; ThiF; 1. DR SUPFAM; SSF69572; SSF69572; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 53 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 12 240 ThiF. {ECO:0000259|Pfam:PF00899}. SQ SEQUENCE 255 AA; 28116 MW; 936DC11019E78B72 CRC64; MLSRLEKERY LRHIMLEDVG EEGQLKLLKS SVLVIGAGGL GSAVLMYLCA AGIGKIGIVD FDVVDMSNLQ RQIIHSQDFL NQSKASSAKA RLKQLNAGIE IEAFEERFKA HNALSLIEPY DFIIDATDNF NAKFLINDAC VLAQKPYSHA GVLEYRGQSM SVLPHSACLA CVFDKPPKKG LNPISGLFGV LPGVLGCIQA SECLKYFLGF ETLLINTLLI ADIKTMDFKK IQAPKNPECR VCGTHKITHL QDYEI // ID O25185_HELPY Unreviewed; 191 AA. AC O25185; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07506.1}; GN OrderedLocusNames=HP_0435 {ECO:0000313|EMBL:AAD07506.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07506.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07506.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07506.1; -; Genomic_DNA. DR PIR; C64574; C64574. DR ProteinModelPortal; O25185; -. DR DIP; DIP-3394N; -. DR IntAct; O25185; 8. DR MINT; MINT-166764; -. DR STRING; 85962.HP0435; -. DR PaxDb; O25185; -. DR PRIDE; O25185; -. DR EnsemblBacteria; AAD07506; AAD07506; HP_0435. DR PATRIC; 20592129; VBIHelPyl33062_0453. DR eggNOG; COG1112; LUCA. DR OrthoDB; EOG6JQGXM; -. DR BioCyc; HPY:HP0435-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 191 AA; 22162 MW; B2FF49933A2A5D2A CRC64; MDEVLKEILS SYQKRALKLT KRVRKKIFKN DPTENQKKAI KIALNTPDIA IIQGPPGTGK TTVINAICER LFEEYPKDKN IKGQILLCAQ GHDATNNARE RIKVGGLPTF KFGAKKNAKE EQYKQDERLN ERLREFAETL IESVRKKLQK LGDYENIEKI LDLEEALRRY YSSPISELEF LKEIEKNESF F // ID O25275_HELPY Unreviewed; 142 AA. AC O25275; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Cag pathogenicity island protein (Cag21) {ECO:0000313|EMBL:AAD07608.1}; GN OrderedLocusNames=HP_0542 {ECO:0000313|EMBL:AAD07608.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07608.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07608.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07608.1; -; Genomic_DNA. DR PIR; F64587; F64587. DR RefSeq; NP_207338.1; NC_000915.1. DR RefSeq; WP_000855900.1; NC_018939.1. DR ProteinModelPortal; O25275; -. DR STRING; 85962.HP0542; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25275; -. DR EnsemblBacteria; AAD07608; AAD07608; HP_0542. DR GeneID; 900042; -. DR KEGG; heo:C694_02795; -. DR KEGG; hpy:HP0542; -. DR PATRIC; 20592355; VBIHelPyl33062_0566. DR KO; K12106; -. DR OMA; MFNAPLD; -. DR OrthoDB; EOG61KBHW; -. DR BioCyc; HPY:HP0542-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 27 {ECO:0000256|SAM:SignalP}. FT CHAIN 28 142 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158553. SQ SEQUENCE 142 AA; 16026 MW; 9D1A58C9CFE4283B CRC64; MKTNFYKIKL LFAWCLIIGM FNAPLNADQN TDIKDISPED MALNSVGLVS RDQLKIEIPK ETLEQKVAVL NDYNDKNVNI KFDNISLGSF QPNDNLGINA MWGIQNLLMS QMMGDYGPNN PFMYGYAPTY SDSSFLPPIL GY // ID O24880_HELPY Unreviewed; 90 AA. AC O24880; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07119.1}; GN OrderedLocusNames=HP_0039 {ECO:0000313|EMBL:AAD07119.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07119.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07119.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07119.1; -; Genomic_DNA. DR PIR; G64524; G64524. DR ProteinModelPortal; O24880; -. DR EnsemblBacteria; AAD07119; AAD07119; HP_0039. DR BioCyc; HPY:HP0039-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 90 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157697. SQ SEQUENCE 90 AA; 10216 MW; 4063EF462DC15B66 CRC64; MMRKVLYALV GFLLAFSALK ADDFLEEANE TAPAHLNHPM QDLNAIQGSF FDKNRSKMSN TLNIDYFQGQ TYKIPLALCD GDLIVFFKTH // ID O25592_HELPY Unreviewed; 115 AA. AC O25592; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07991.1}; GN OrderedLocusNames=HP_0938 {ECO:0000313|EMBL:AAD07991.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07991.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07991.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07991.1; -; Genomic_DNA. DR PIR; B64637; B64637. DR RefSeq; NP_207730.1; NC_000915.1. DR RefSeq; WP_001862937.1; NC_018939.1. DR ProteinModelPortal; O25592; -. DR DIP; DIP-3591N; -. DR IntAct; O25592; 8. DR MINT; MINT-162023; -. DR STRING; 85962.HP0938; -. DR PaxDb; O25592; -. DR EnsemblBacteria; AAD07991; AAD07991; HP_0938. DR GeneID; 899467; -. DR KEGG; heo:C694_04830; -. DR KEGG; hpy:HP0938; -. DR PATRIC; 20593179; VBIHelPyl33062_0975. DR OMA; IRIEQIN; -. DR OrthoDB; EOG6SBT49; -. DR BioCyc; HPY:HP0938-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004919; DUF262. DR Pfam; PF03235; DUF262; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 69 DUF262. {ECO:0000259|Pfam:PF03235}. SQ SEQUENCE 115 AA; 13764 MW; 38F46C117588BD19 CRC64; MGVFLDKSIK DVVDGLNVRY FLPDIQREYV WLKKADEKKI EQLFDSILRG YPIGSFLFWK LQKEDIAKSD EQDSDKLNFQ LYQFITNYDV RKPHNEKIRI EQINRDDLYI VANSV // ID O25012_HELPY Unreviewed; 22 AA. AC O25012; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07297.1}; GN OrderedLocusNames=HP_0225 {ECO:0000313|EMBL:AAD07297.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07297.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07297.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07297.1; -; Genomic_DNA. DR PIR; A64548; A64548. DR STRING; 85962.HP0225; -. DR PaxDb; O25012; -. DR PRIDE; O25012; -. DR EnsemblBacteria; AAD07297; AAD07297; HP_0225. DR BioCyc; HPY:HP0225-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 22 AA; 2624 MW; 9E98024022F049BE CRC64; MRGLSVWVVL WVILKNAKNR LK // ID O26015_HELPY Unreviewed; 265 AA. AC O26015; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08531.1}; GN OrderedLocusNames=HP_1481 {ECO:0000313|EMBL:AAD08531.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08531.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08531.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08531.1; -; Genomic_DNA. DR PIR; A64705; A64705. DR RefSeq; NP_208272.1; NC_000915.1. DR RefSeq; WP_001262107.1; NC_000915.1. DR ProteinModelPortal; O26015; -. DR IntAct; O26015; 1. DR STRING; 85962.HP1481; -. DR PaxDb; O26015; -. DR EnsemblBacteria; AAD08531; AAD08531; HP_1481. DR GeneID; 899811; -. DR KEGG; heo:C694_07670; -. DR KEGG; hpy:HP1481; -. DR PATRIC; 20594373; VBIHelPyl33062_1555. DR eggNOG; ENOG4108QRP; Bacteria. DR eggNOG; COG0388; LUCA. DR OMA; HWDEESF; -. DR OrthoDB; EOG6FZ49P; -. DR BioCyc; HPY:HP1481-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 265 CN hydrolase. FT {ECO:0000259|PROSITE:PS50263}. SQ SEQUENCE 265 AA; 30759 MW; 5460B1ABF6FEBD69 CRC64; MRVFALQLES FKENLMQSLF NSIPKKSVIV LPEYVINPFF HHNMGLDVNE ISDQSARAVE FLSQKCEELD LIVSAPVLLE EHSKIYKKIA LISKESVKYY TQQRLIPYPH WDEESFFDNE KSAFKELLVF ERDGLKFAPL FGFEAHFDEI WVQAKNQGVD VVLLSSVATF ESNERWRLLC QMRAFCASCV VVRANRIGAY RQIIVEEDQK NEFLWKFYGD SFVALPNGAI EDSLEGKMGA LNAQIDKNDI DEWAKLWHFR TIKEG // ID O25749_HELPY Unreviewed; 331 AA. AC O25749; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08181.1}; GN OrderedLocusNames=HP_1124 {ECO:0000313|EMBL:AAD08181.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08181.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08181.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08181.1; -; Genomic_DNA. DR PIR; D64660; D64660. DR RefSeq; NP_207915.1; NC_000915.1. DR RefSeq; WP_000825110.1; NC_018939.1. DR ProteinModelPortal; O25749; -. DR DIP; DIP-3072N; -. DR IntAct; O25749; 4. DR MINT; MINT-187724; -. DR STRING; 85962.HP1124; -. DR PaxDb; O25749; -. DR EnsemblBacteria; AAD08181; AAD08181; HP_1124. DR GeneID; 899661; -. DR KEGG; heo:C694_05805; -. DR KEGG; hpy:HP1124; -. DR PATRIC; 20593593; VBIHelPyl33062_1176. DR eggNOG; ENOG41090B2; Bacteria. DR eggNOG; ENOG4111Q0V; LUCA. DR OMA; YMPVLLW; -. DR OrthoDB; EOG6FBWXD; -. DR BioCyc; HPY:HP1124-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 75 162 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 331 AA; 38378 MW; 112806A098469B51 CRC64; MKRLFFIPFI APFFLNGEPS AFDLQSGATK KELKQLQINS KNFSNILTKI HSQVEANTQA QEGLRSVYEG QANKIKDLNN AILSQEESLR ALKASQEVQA NTLKQQSQTL EDLRNEIHAN QQAIQQLDKQ NKEMSELLTK LSQDLVSQIA LIQKALKEQE EKAEKPLKSN APANKTPSLK AESPKNQEGK TQEKAKIEFD KDLSKQKEIF QEALSFFKNK SYAEAKERLL WLEANSYRLY YVRYVLGEVA YGEKRYREAI KYYKESALLN KKASYMPVLL WHTAWSFKKI KDDQNYYKFL NTLQHLYPSS EQAKMAQKIL ENKEKHHHAK P // ID O25389_HELPY Unreviewed; 36 AA. AC O25389; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD14889.1}; GN OrderedLocusNames=HP_0678 {ECO:0000313|EMBL:AAD14889.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14889.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14889.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14889.1; -; Genomic_DNA. DR PIR; F64604; F64604. DR ProteinModelPortal; O25389; -. DR STRING; 85962.HP0678; -. DR PaxDb; O25389; -. DR PRIDE; O25389; -. DR EnsemblBacteria; AAD14889; AAD14889; HP_0678. DR BioCyc; HPY:HP0678-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 36 AA; 4285 MW; ED4062468C08A4FF CRC64; MTLWRLSNWL NELRNLPVSE PNEDSHVLCC KNKTDQ // ID O25479_HELPY Unreviewed; 431 AA. AC O25479; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Anti-codon nuclease masking agent (PrrB) {ECO:0000313|EMBL:AAD07838.1}; GN OrderedLocusNames=HP_0790 {ECO:0000313|EMBL:AAD07838.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07838.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07838.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07838.1; -; Genomic_DNA. DR PIR; F64618; F64618. DR RefSeq; NP_207583.1; NC_000915.1. DR RefSeq; WP_000548846.1; NC_018939.1. DR ProteinModelPortal; O25479; -. DR IntAct; O25479; 3. DR STRING; 85962.HP0790; -. DR REBASE; 56841; S.Hpy26695ORF4050P. DR PaxDb; O25479; -. DR EnsemblBacteria; AAD07838; AAD07838; HP_0790. DR GeneID; 898858; -. DR KEGG; heo:C694_04050; -. DR KEGG; hpy:HP0790; -. DR PATRIC; 20592867; VBIHelPyl33062_0822. DR eggNOG; ENOG4105EKX; Bacteria. DR eggNOG; COG0732; LUCA. DR KO; K01154; -. DR OMA; NESMNTI; -. DR OrthoDB; EOG6PKF94; -. DR BioCyc; HPY:HP0790-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 193 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 241 403 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 431 AA; 49769 MW; 872B2494AA208E61 CRC64; MHKIERLLQT LAPKGVEFKT LEEVFEIKNG YTPSKNNPEF WKNGTIPWFR MEDIRENGRI LKDSIQHITP KALKGKKLFP KNSIIISTKA TIGEHALLIV DSLANQQFTF LSKKANCDLA LDMKFFFYQC FLLGEWCKNN INVSGFASVD MTAFKKYKFP IPPLEIQQEI VKILDAFTEL NTELNTELNT ELKARKKQYE YYQNMLLDFN DINQSHKDAK ERLAQKTYPK RLKTLLQTLA PKGVEFRKLG EVCEILDNRR IPIAKNKRNP GIYPYYGANG IQDYIDSYIF DGDFVLVGED GSVINKDNTP VVNWASGKIW VNNHAHVLQT KNELKLKFLY FYLQTIDVSY CVAGTPPKIN QENLKKIAIP IPPLEIQQEI VKILDQFSIL TTDLLAGIPA EIKARKKQYE YYREKLLTFK PLTPLNSKEL A // ID O25257_HELPY Unreviewed; 115 AA. AC O25257; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Cag pathogenicity island protein (Cag1) {ECO:0000313|EMBL:AAD07588.1}; GN OrderedLocusNames=HP_0520 {ECO:0000313|EMBL:AAD07588.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07588.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07588.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07588.1; -; Genomic_DNA. DR PIR; H64584; H64584. DR RefSeq; NP_207317.1; NC_000915.1. DR RefSeq; WP_000785752.1; NC_018939.1. DR ProteinModelPortal; O25257; -. DR IntAct; O25257; 8. DR STRING; 85962.HP0520; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25257; -. DR EnsemblBacteria; AAD07588; AAD07588; HP_0520. DR GeneID; 899266; -. DR KEGG; heo:C694_02675; -. DR KEGG; hpy:HP0520; -. DR PATRIC; 20592317; VBIHelPyl33062_0547. DR KO; K12086; -. DR OMA; NTTETTH; -. DR OrthoDB; EOG67HJZ1; -. DR BioCyc; HPY:HP0520-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 66 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 115 AA; 12439 MW; CE3F82EB0803ED7E CRC64; MADTINTTEA THETKKPNAF VNFFKNNLTD KRYDSLGLIG AGVLCCVLSG AMGIVGIIFV AIGIFLSFSN INLVKLVEKL SKKQSKVPTT VNNETQKSQA TSVTNEPTEA KETKD // ID O25104_HELPY Unreviewed; 101 AA. AC O25104; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07409.1}; GN OrderedLocusNames=HP_0337 {ECO:0000313|EMBL:AAD07409.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07409.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07409.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07409.1; -; Genomic_DNA. DR PIR; A64562; A64562. DR RefSeq; NP_207135.1; NC_000915.1. DR RefSeq; WP_000699933.1; NC_018939.1. DR ProteinModelPortal; O25104; -. DR DIP; DIP-3367N; -. DR IntAct; O25104; 1. DR MINT; MINT-186702; -. DR STRING; 85962.HP0337; -. DR PaxDb; O25104; -. DR DNASU; 900097; -. DR EnsemblBacteria; AAD07409; AAD07409; HP_0337. DR GeneID; 900097; -. DR KEGG; heo:C694_01710; -. DR KEGG; hpy:HP0337; -. DR PATRIC; 20591909; VBIHelPyl33062_0351. DR OMA; WEKGDNE; -. DR OrthoDB; EOG6WMJ2G; -. DR BioCyc; HPY:HP0337-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 101 AA; 12223 MW; 9EF4896034792A70 CRC64; MKIMHQVRDF LDSCKQTIQK NSSEVFQKTK RAFFKEESQK IREQAVKIVE KRLKKEGMKL SDFNEEELKI MFEAEEKRLL EQIQTKHFKE VWEKGDNEQG K // ID O25938_HELPY Unreviewed; 149 AA. AC O25938; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08430.1}; GN OrderedLocusNames=HP_1388 {ECO:0000313|EMBL:AAD08430.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08430.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08430.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08430.1; -; Genomic_DNA. DR PIR; D64693; D64693. DR RefSeq; NP_208179.1; NC_000915.1. DR RefSeq; WP_001862625.1; NC_018939.1. DR ProteinModelPortal; O25938; -. DR IntAct; O25938; 3. DR PaxDb; O25938; -. DR EnsemblBacteria; AAD08430; AAD08430; HP_1388. DR GeneID; 900291; -. DR KEGG; heo:C694_07170; -. DR KEGG; hpy:HP1388; -. DR PATRIC; 20594165; VBIHelPyl33062_1453. DR OMA; FLEFCKQ; -. DR OrthoDB; EOG6MSS4Z; -. DR BioCyc; HPY:HP1388-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 45 82 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 149 AA; 18018 MW; 797FF0104338D918 CRC64; MNNIWFQYKI GKQLDELEIE DSLCLSLFKS LENCIKFKKL SNIGLKEAEV KRDTEILREK NLKEERRQKE EQEKKSQENF QKFLEFCKQQ NRVLKKFDST NFSFECDEPA TKKPLENPTN NILNSNHQNT QLQNNTKMFD YFDNPMFRY // ID O24976_HELPY Unreviewed; 253 AA. AC O24976; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07242.1}; GN OrderedLocusNames=HP_0170 {ECO:0000313|EMBL:AAD07242.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07242.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07242.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07242.1; -; Genomic_DNA. DR PIR; B64541; B64541. DR RefSeq; NP_206969.1; NC_000915.1. DR RefSeq; WP_000191026.1; NC_018939.1. DR ProteinModelPortal; O24976; -. DR DIP; DIP-3127N; -. DR IntAct; O24976; 1. DR MINT; MINT-164678; -. DR STRING; 85962.HP0170; -. DR PaxDb; O24976; -. DR EnsemblBacteria; AAD07242; AAD07242; HP_0170. DR GeneID; 900235; -. DR KEGG; heo:C694_00840; -. DR KEGG; hpy:HP0170; -. DR PATRIC; 20591561; VBIHelPyl33062_0180. DR eggNOG; ENOG4108V0Z; Bacteria. DR eggNOG; ENOG4111IP1; LUCA. DR OMA; YMNSLFE; -. DR OrthoDB; EOG6MPWTV; -. DR BioCyc; HPY:HP0170-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 15 56 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 253 AA; 28622 MW; E8E602D002F8FBFF CRC64; MTQEELDALM NGGDLENLEA LETKEETKEE AKEEAKEEAK EEAKEKEEIK EESSSQKMTV KKEDAEKYGK ISPNEWPPPP PTEEHKVVHQ LDDVTRDSEV KATQIFDQLD LIGASAEKIA KMVKKIQEPL QKHQEIFDNL HGHFPHVESF KTALNEQQEI LNALKSIEEE AANCSDSSMQ AMDIMQFQDI HRQKIERVVN VMRALSQYMN SLFEGKIDDS KRVSSATFIT GDDDKDLASA DDIEALIASF GAK // ID O25423_HELPY Unreviewed; 152 AA. AC O25423; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07777.1}; GN OrderedLocusNames=HP_0721 {ECO:0000313|EMBL:AAD07777.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07777.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07777.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2XRH} RP X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 20-112. RX PubMed=21365686; DOI=10.1002/prot.22988; RA Cioci G., Terradot L., Dian C., Mueller-Dieckmann C., Leonard G.; RT "Crystal structure of HP0721, a novel secreted protein from RT Helicobacter pylori."; RL Proteins 79:1678-1681(2011). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07777.1; -; Genomic_DNA. DR PIR; A64610; A64610. DR RefSeq; NP_207515.1; NC_000915.1. DR RefSeq; WP_000709617.1; NC_018939.1. DR PDB; 2XRH; X-ray; 1.50 A; A=20-112. DR PDBsum; 2XRH; -. DR ProteinModelPortal; O25423; -. DR IntAct; O25423; 15. DR STRING; 85962.HP0721; -. DR PaxDb; O25423; -. DR EnsemblBacteria; AAD07777; AAD07777; HP_0721. DR GeneID; 899322; -. DR KEGG; heo:C694_03710; -. DR KEGG; hpy:HP0721; -. DR PATRIC; 20592729; VBIHelPyl33062_0753. DR OMA; EQGKKDH; -. DR OrthoDB; EOG6C2WHN; -. DR BioCyc; HPY:HP0721-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR009488; DUF1104. DR Pfam; PF06518; DUF1104; 1. DR PIRSF; PIRSF016128; DUF1104; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2XRH}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 152 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157908. SQ SEQUENCE 152 AA; 17581 MW; 90DAEB16CF50520B CRC64; MKKALKILSV SALLFVALNA KDFSKTSDED LAKMAGVVAP QDIVDYTKEL KKRMEKMPED KRKAFHKQLH EYATKNTDKM TVADFEARQK AVKEALKKGN MEDMDDDFGL RSCKHGKKHK HDKHGKKHGK KHDKDHDDKD HDHHDEDHSD KH // ID O25640_HELPY Unreviewed; 79 AA. AC O25640; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08037.1}; GN OrderedLocusNames=HP_0992 {ECO:0000313|EMBL:AAD08037.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08037.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08037.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08037.1; -; Genomic_DNA. DR PIR; H64643; H64643. DR RefSeq; WP_010875577.1; NC_018939.1. DR ProteinModelPortal; O25640; -. DR IntAct; O25640; 3. DR STRING; 85962.HP0992; -. DR PaxDb; O25640; -. DR PRIDE; O25640; -. DR EnsemblBacteria; AAD08037; AAD08037; HP_0992. DR PATRIC; 20593309; VBIHelPyl33062_1036. DR OrthoDB; EOG693GXK; -. DR BioCyc; HPY:HP0992-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 79 AA; 8694 MW; 68DF80350787A27F CRC64; MIKLNGLNKT LKTSLLAEVL LGATAPLMAK PLLSDEDLLK RVKLHNIKED TLTSCNAKVD GSQYLNSGWN LSKEFPQVI // ID O25667_HELPY Unreviewed; 416 AA. AC O25667; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08071.1}; GN OrderedLocusNames=HP_1023 {ECO:0000313|EMBL:AAD08071.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08071.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08071.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08071.1; -; Genomic_DNA. DR PIR; G64647; G64647. DR RefSeq; NP_207813.1; NC_000915.1. DR RefSeq; WP_001199552.1; NC_018939.1. DR ProteinModelPortal; O25667; -. DR STRING; 85962.HP1023; -. DR PaxDb; O25667; -. DR EnsemblBacteria; AAD08071; AAD08071; HP_1023. DR GeneID; 899558; -. DR KEGG; heo:C694_05295; -. DR KEGG; hpy:HP1023; -. DR PATRIC; 20593383; VBIHelPyl33062_1072. DR eggNOG; ENOG4106JE1; Bacteria. DR eggNOG; ENOG410Y9RC; LUCA. DR OMA; FVDFDWI; -. DR OrthoDB; EOG65BDG9; -. DR BioCyc; HPY:HP1023-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 416 AA; 46796 MW; A2079E22489D0EFC CRC64; MQYKKNKKRY YYLALGIFFL NGLSLKALEI AVKPFGYLGL LYNQGAQKNP HSYVGALARL GVDFSYSNGW SFGIGAIGAW NIYNKQRLAN LYISLGNFFG SSKNVKPYLS AGDVSDAYVQ YTNQRFKIAL GRFNTDFVDF DWIGGNIQGV SVAFKQNSMR YFGIFMDSML YNGHQINKEQ GNRIATSLNA LASYDPVSKR LYVGGEVFVL GAEYRHENLK VVPFILTDTR LPLSTQNVLV QVGGKLEYDA SLAKGFTSHT LVHGMYQYGN TDAATSVKNA GLFLIDQTFK YKIFNFGTGF YIVPARNNKG YLWTFNDRTK FYGRGINAPG VPAIYFANSS ISGYVFLGLK TKRVRLDAMV AFGDYQEYSL MSSFRVWTYR SLSFDMGGGY VYAYNSKATR KSLGNSSFVF FGKFLF // ID O25453_HELPY Unreviewed; 437 AA. AC O25453; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07806.1}; GN OrderedLocusNames=HP_0758 {ECO:0000313|EMBL:AAD07806.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07806.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07806.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07806.1; -; Genomic_DNA. DR PIR; F64614; F64614. DR RefSeq; NP_207551.1; NC_000915.1. DR RefSeq; WP_000892547.1; NC_018939.1. DR ProteinModelPortal; O25453; -. DR STRING; 85962.HP0758; -. DR PaxDb; O25453; -. DR DNASU; 898859; -. DR EnsemblBacteria; AAD07806; AAD07806; HP_0758. DR GeneID; 898859; -. DR KEGG; heo:C694_03900; -. DR KEGG; hpy:HP0758; -. DR PATRIC; 20592805; VBIHelPyl33062_0791. DR eggNOG; ENOG4105D3Y; Bacteria. DR eggNOG; COG2056; LUCA. DR KO; K07084; -. DR OMA; NHIYDTC; -. DR OrthoDB; EOG6D5G41; -. DR BioCyc; HPY:HP0758-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR018461; Na/H_Antiport_NhaC-like_C. DR InterPro; IPR032813; Na_H_antiport_N. DR Pfam; PF13726; Na_H_antiport_2; 1. DR Pfam; PF03553; Na_H_antiporter; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 31 49 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 169 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 189 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 233 253 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 287 308 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 328 359 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 366 384 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 418 436 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 10 96 Na_H_antiport_2. FT {ECO:0000259|Pfam:PF13726}. FT DOMAIN 150 430 Na_H_antiporter. FT {ECO:0000259|Pfam:PF03553}. SQ SEQUENCE 437 AA; 46720 MW; FA151D38091CEA41 CRC64; MLENSSIWSN PAFVAIICMC VLSLLRLNVM LSMISATLIA GLMGGLGITE SFNAMIDGMK GNLNIALSYI LLGALAVAIA KSNLIKVALS KLIGLMDYKR STFCFLIAFI ACFSQNLVPV HIAFIPILIP PLLHLMNRLE LDRRAVACAL TFGLQAPYLV LPVGFGLIFQ TTILEQLKAN GVSTTIAQIT GVMWIAGLAM VVGLLVAVLT LYKKPRHYKE KSFNIENYAS LQLNYHDYLT FIGIVVAFVI QLATDSMPLA AFLALAIILL GRGIKFKETD SLMDDSVKMM AFIAFVMLVA SGFGEVLQKV HAIEGLVNAI TSVVQGKLLG AFLMLVVGLF ITMGIGTSFG TIPIIAVFYV PLCAKLGFSV ESTILLIGIA AALGDAGSPA SDSTMGPTCG LNADNQHNHI YDTCVPTFLV YNLPLIVFGV VGALLLG // ID O25782_HELPY Unreviewed; 471 AA. AC O25782; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08213.1}; GN OrderedLocusNames=HP_1167 {ECO:0000313|EMBL:AAD08213.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08213.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08213.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08213.1; -; Genomic_DNA. DR PIR; G64665; G64665. DR RefSeq; NP_207958.1; NC_000915.1. DR RefSeq; WP_000710296.1; NC_018939.1. DR ProteinModelPortal; O25782; -. DR PaxDb; O25782; -. DR EnsemblBacteria; AAD08213; AAD08213; HP_1167. DR GeneID; 899927; -. DR KEGG; heo:C694_06025; -. DR KEGG; hpy:HP1167; -. DR PATRIC; 20593687; VBIHelPyl33062_1222. DR OMA; RLTWFSS; -. DR OrthoDB; EOG6DC6F7; -. DR BioCyc; HPY:HP1167-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 471 AA; 52672 MW; 3F7993A35674B9AF CRC64; MKKASQVLFF GAFLSSSLQG FEAKLNGFVD QSSTIGFNQH KINKERGIYP MQQFATIAGY LGLGFSLLPK KVSDHVLKGK IGGMVGSIFY DGTKKFEDSS VAYNLFGYYD GFMGGYTNIL QSDDLATQNM KYNKNVRNYV FSDAYLEYAY KNYFEIKAGR YLSTMPYKSG QTQGFQISGQ YKKARLTWFS SFGRAFAYGS FLMDWFAART TYSGGFTKND KGGYDSHGRK VLYGTHAVQL TYKPHRFLIE GFYYLSPQIF NAPGVKIGWD SNPNFSGTGF RSDTAIIGFF PIYYPWMIVK SNGSPVYKYD TPATQNGQNL IILQRFDINN YNVSIAFYKV FQNANGWIGN MGNPSGVIMG SNSVYAGFTG TALKRDAATI FLSCGGTHFA KKFTWKFATQ YSNSVVSWEA RAMISLGYKF TEYLSGSVDL AYYGVYTNKG FKPGENGPVP KDFPALYSDR SALYTALVAS F // ID O26095_HELPY Unreviewed; 90 AA. AC O26095; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=ABC transporter, putative {ECO:0000313|EMBL:AAD08615.1}; GN OrderedLocusNames=HP_1575 {ECO:0000313|EMBL:AAD08615.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08615.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08615.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08615.1; -; Genomic_DNA. DR PIR; G64716; G64716. DR RefSeq; NP_208366.1; NC_000915.1. DR RefSeq; WP_001044050.1; NC_018939.1. DR ProteinModelPortal; O26095; -. DR IntAct; O26095; 1. DR STRING; 85962.HP1575; -. DR PaxDb; O26095; -. DR DNASU; 899716; -. DR EnsemblBacteria; AAD08615; AAD08615; HP_1575. DR GeneID; 899716; -. DR KEGG; heo:C694_08160; -. DR KEGG; hpy:HP1575; -. DR PATRIC; 20594577; VBIHelPyl33062_1656. DR eggNOG; ENOG4105VM1; Bacteria. DR eggNOG; COG2257; LUCA. DR KO; K04061; -. DR OMA; VELDCTI; -. DR OrthoDB; EOG6FRD1F; -. DR BioCyc; HPY:HP1575-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0009306; P:protein secretion; IEA:InterPro. DR Gene3D; 3.40.1690.10; -; 1. DR InterPro; IPR004683; T3SS_FlhB-rel. DR InterPro; IPR006135; T3SS_substrate_exporter. DR InterPro; IPR029025; T3SS_substrate_exporter_C. DR PANTHER; PTHR30531; PTHR30531; 1. DR Pfam; PF01312; Bac_export_2; 1. DR SUPFAM; SSF160544; SSF160544; 1. DR TIGRFAMs; TIGR00789; flhB_rel; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 90 AA; 9982 MW; 1E3C7D0DB86F7B01 CRC64; MNKTIKAAAL AYNMGQDHAP KVIASGVGEV AKRIIQKAKE YDIALFSNPM LVDSLLKVEL DCAIPEELYE SVVQVFLWLN SVENNVQMSK // ID O25102_HELPY Unreviewed; 62 AA. AC O25102; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07407.1}; GN OrderedLocusNames=HP_0335 {ECO:0000313|EMBL:AAD07407.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07407.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07407.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07407.1; -; Genomic_DNA. DR PIR; G64561; G64561. DR RefSeq; WP_010875464.1; NC_018939.1. DR ProteinModelPortal; O25102; -. DR STRING; 85962.HP0335; -. DR PaxDb; O25102; -. DR PRIDE; O25102; -. DR EnsemblBacteria; AAD07407; AAD07407; HP_0335. DR BioCyc; HPY:HP0335-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 62 AA; 6989 MW; 834F89F7D6B9E859 CRC64; MAEPTPEEPV DLGLKSMRLG NVSGKVEDFI RGRKYIEKAC ELNDGRGWNG KKRLEESHSI LC // ID O25571_HELPY Unreviewed; 529 AA. AC O25571; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Outer membrane protein (Omp21) {ECO:0000313|EMBL:AAD07957.1}; GN OrderedLocusNames=HP_0913 {ECO:0000313|EMBL:AAD07957.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07957.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07957.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07957.1; -; Genomic_DNA. DR PIR; A64634; A64634. DR RefSeq; NP_207705.1; NC_000915.1. DR RefSeq; WP_000812546.1; NC_018939.1. DR ProteinModelPortal; O25571; -. DR DIP; DIP-3734N; -. DR IntAct; O25571; 1. DR MINT; MINT-183152; -. DR STRING; 85962.HP0913; -. DR PaxDb; O25571; -. DR EnsemblBacteria; AAD07957; AAD07957; HP_0913. DR GeneID; 899442; -. DR KEGG; heo:C694_04700; -. DR KEGG; hpy:HP0913; -. DR PATRIC; 20593127; VBIHelPyl33062_0949. DR KO; K15844; -. DR OMA; HVFNSAN; -. DR OrthoDB; EOG6P06V2; -. DR BioCyc; HPY:HP0913-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 529 AA; 57063 MW; 160898E4564F73EA CRC64; MKQNLKPFKM IKENLMTQSQ KVRFLAPLSL ALSLSFNPVG AEEDGGFMTF GYELGQVVQQ VKNPGKIKAE ELAGLLNSNT TNNTNTNIAG TGGNVAGTLG NLFMNQLGNL IDLYPILNTK NIHQCGTTNN GSSSATTAAA TTNNGLCFQG NLDLYNEMVG SIKTLSQNIS KNIFQGNNNT TSQNLSNQLS ELNTASVYLT YMNSFLNANN QAGGIFQNNT NQAYGNGVTA QQIAYILKQA SITMGPSGDS GAAAAFLDAA LAQHVFNSAN AGNDLSAKEF TSLVQNIVNN SQNALTLANN ANISNSTGYQ VSYGGHIDQA RSTQLLNNTT NTLAKVTALN NELKANPWLG NFAAGNSSQV NAFNGFITKI GYKQFFGENK NVGLRYYGFF SYNGAGVGNG PTYNQVNLLT YGVGTDVLYN VFSRSFGSRS LNAGFFGGIQ LAGDTYISTL RNSPQLANRP TATKFQFLFD VGLRMNFGIL KKDLKSHNQH SIEIGVQIPT IYNTYYKAGG AEVKYFRPYS VYWVYGYAF // ID O25719_HELPY Unreviewed; 280 AA. AC O25719; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE RecName: Full=Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; DE EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491}; DE EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491}; GN OrderedLocusNames=HP_1087 {ECO:0000313|EMBL:AAD08130.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08130.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08130.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: ATP + FMN = diphosphate + FAD. CC {ECO:0000256|PIRNR:PIRNR004491}. CC -!- CATALYTIC ACTIVITY: ATP + riboflavin = ADP + FMN. CC {ECO:0000256|PIRNR:PIRNR004491}. CC -!- PATHWAY: Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: CC step 1/1. {ECO:0000256|PIRNR:PIRNR004491}. CC -!- PATHWAY: Cofactor biosynthesis; FMN biosynthesis; FMN from CC riboflavin (ATP route): step 1/1. {ECO:0000256|PIRNR:PIRNR004491}. CC -!- SIMILARITY: Belongs to the ribF family. CC {ECO:0000256|PIRNR:PIRNR004491}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08130.1; -; Genomic_DNA. DR PIR; G64655; G64655. DR RefSeq; NP_207878.1; NC_000915.1. DR RefSeq; WP_000931634.1; NC_000915.1. DR ProteinModelPortal; O25719; -. DR STRING; 85962.HP1087; -. DR PaxDb; O25719; -. DR EnsemblBacteria; AAD08130; AAD08130; HP_1087. DR GeneID; 899623; -. DR KEGG; heo:C694_05615; -. DR KEGG; hpy:HP1087; -. DR PATRIC; 20593513; VBIHelPyl33062_1136. DR eggNOG; ENOG4105DTN; Bacteria. DR eggNOG; COG0196; LUCA. DR KO; K11753; -. DR OMA; QRKIYKS; -. DR OrthoDB; EOG6QP0ZV; -. DR BioCyc; HPY:HP1087-MONOMER; -. DR UniPathway; UPA00276; UER00406. DR UniPathway; UPA00277; UER00407. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003919; F:FMN adenylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0008531; F:riboflavin kinase activity; IEA:UniProtKB-EC. DR GO; GO:0006747; P:FAD biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009398; P:FMN biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 2.40.30.30; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR015864; FAD_synthase. DR InterPro; IPR023468; Riboflavin_kinase. DR InterPro; IPR002606; Riboflavin_kinase_bac. DR InterPro; IPR015865; Riboflavin_kinase_bac/euk. DR InterPro; IPR023465; Riboflavin_kinase_domain. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR PANTHER; PTHR22749; PTHR22749; 1. DR Pfam; PF06574; FAD_syn; 1. DR Pfam; PF01687; Flavokinase; 1. DR PIRSF; PIRSF004491; FAD_Synth; 1. DR SMART; SM00904; Flavokinase; 1. DR SUPFAM; SSF82114; SSF82114; 1. DR TIGRFAMs; TIGR00083; ribF; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|PIRNR:PIRNR004491}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW FAD {ECO:0000256|PIRNR:PIRNR004491}; KW Flavoprotein {ECO:0000256|PIRNR:PIRNR004491}; KW FMN {ECO:0000256|PIRNR:PIRNR004491}; KW Kinase {ECO:0000256|PIRNR:PIRNR004491}; KW Nucleotide-binding {ECO:0000256|PIRNR:PIRNR004491}; KW Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR004491}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|PIRNR:PIRNR004491}. FT DOMAIN 157 280 Flavokinase. {ECO:0000259|SMART:SM00904}. SQ SEQUENCE 280 AA; 32211 MW; 977516175192A188 CRC64; MLNFLSISSE PKIKSLAIGK FDGLHLGHQA LFKELKDPKA LLIIEKKHYT KGYLTPLKYR AKLVGMPLFF VYLEEISQLN ALDFLDLLKK KFPHLERLVV GYDFRFGHER QNDALFLKER FEKTIIVPEV KVQEISVHSK MIKLALSHGD LSLANKLLGR PYEVCGEVIS DQGLGHKELA PTLNIKTKDF ILPSFGVYAS LVKIKDPIYQ KSVSFIGNRL STDQNFAIEC HVLDTIIENP PQEIALRWVQ KIRDNMRFSS LKELKNQIQQ DILRAKEILR // ID O25621_HELPY Unreviewed; 21 AA. AC O25621; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08019.1}; GN OrderedLocusNames=HP_0968 {ECO:0000313|EMBL:AAD08019.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08019.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08019.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08019.1; -; Genomic_DNA. DR PIR; H64640; H64640. DR EnsemblBacteria; AAD08019; AAD08019; HP_0968. DR BioCyc; HPY:HP0968-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 21 AA; 2475 MW; D2D558B7BDA87EFD CRC64; MLALEIYIDI CLKDALIDYF V // ID O25309_HELPY Unreviewed; 329 AA. AC O25309; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Aminodeoxychorismate lyase (PabC) {ECO:0000313|EMBL:AAD07652.1}; GN OrderedLocusNames=HP_0587 {ECO:0000313|EMBL:AAD07652.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07652.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07652.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07652.1; -; Genomic_DNA. DR PIR; C64593; C64593. DR RefSeq; NP_207382.1; NC_000915.1. DR RefSeq; WP_000208854.1; NC_018939.1. DR ProteinModelPortal; O25309; -. DR DIP; DIP-3582N; -. DR IntAct; O25309; 2. DR MINT; MINT-186070; -. DR STRING; 85962.HP0587; -. DR PaxDb; O25309; -. DR EnsemblBacteria; AAD07652; AAD07652; HP_0587. DR GeneID; 899284; -. DR KEGG; heo:C694_03030; -. DR KEGG; hpy:HP0587; -. DR PATRIC; 20592451; VBIHelPyl33062_0614. DR eggNOG; ENOG4105HHA; Bacteria. DR eggNOG; COG1559; LUCA. DR KO; K07082; -. DR OMA; WFEKIIL; -. DR OrthoDB; EOG67T5RG; -. DR BioCyc; HPY:HP0587-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.30.160.60; -; 1. DR InterPro; IPR003770; UPF0755_YceG-like. DR InterPro; IPR013087; Znf_C2H2/integrase_DNA-bd. DR Pfam; PF02618; YceG; 1. DR TIGRFAMs; TIGR00247; TIGR00247; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Lyase {ECO:0000313|EMBL:AAD07652.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 34 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 329 AA; 37616 MW; C53A3805ACF7F258 CRC64; MTTKRVNTAT NKIMTLNTFL DTCFLLFISI LFYLSIPIYP NKVVVVPQGS LKKVFFSLKE QGVDMNALDL LFLRLMGMPK KGYIDMGDGA LRKGDFLVRL IKAKAAQKSA TLIPGESRYF FTQILSETYQ LETSDLNQAY ESIAPRLNGE VIEDGVIWPD TYHLPLGEDA FKIMQTLIGQ SMKKHEALSK QWLGYYHKEE WFEKIILASI VQKEAANVEE MPLIASVIFN RLKKGMPLQM DGALNYQEFS HAKVTKERIK TDNTPYNTYK FKGLPKNPVG SVSLEAIRAV IFPKKTDFLY FVKMPDKKHA FSATYKEHLK NINLSNNHF // ID O25081_HELPY Unreviewed; 122 AA. AC O25081; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07384.1}; GN OrderedLocusNames=HP_0311 {ECO:0000313|EMBL:AAD07384.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07384.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07384.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07384.1; -; Genomic_DNA. DR PIR; G64558; G64558. DR RefSeq; NP_207109.1; NC_000915.1. DR RefSeq; WP_000337920.1; NC_018939.1. DR ProteinModelPortal; O25081; -. DR DIP; DIP-3333N; -. DR IntAct; O25081; 1. DR MINT; MINT-170638; -. DR STRING; 85962.HP0311; -. DR PaxDb; O25081; -. DR DNASU; 900092; -. DR EnsemblBacteria; AAD07384; AAD07384; HP_0311. DR GeneID; 900092; -. DR KEGG; heo:C694_01570; -. DR KEGG; hpy:HP0311; -. DR PATRIC; 20591849; VBIHelPyl33062_0322. DR eggNOG; ENOG410640C; Bacteria. DR eggNOG; ENOG41128TU; LUCA. DR OMA; NQILAFY; -. DR OrthoDB; EOG6B62CT; -. DR BioCyc; HPY:HP0311-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 122 AA; 13818 MW; A9A04BD3FE34C6F5 CRC64; MCVLCGELIS SFHWTDESDS YGIDENLKGQ NALISANENA RERKRARLKR VRLLNQILAF YGLKINDWQG AKFVLCDKKG QSVIVNDLGD LWDKAQNLAK KEMDALDSHL LAFLNQNANA IH // ID O25798_HELPY Unreviewed; 202 AA. AC O25798; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Carbonic anhydrase {ECO:0000313|EMBL:AAD08232.1}; GN OrderedLocusNames=HP_1186 {ECO:0000313|EMBL:AAD08232.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08232.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08232.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08232.1; -; Genomic_DNA. DR PIR; B64668; B64668. DR RefSeq; NP_207977.1; NC_000915.1. DR RefSeq; WP_010875602.1; NC_000915.1. DR ProteinModelPortal; O25798; -. DR STRING; 85962.HP1186; -. DR PaxDb; O25798; -. DR EnsemblBacteria; AAD08232; AAD08232; HP_1186. DR GeneID; 899948; -. DR KEGG; hpy:HP1186; -. DR PATRIC; 20593729; VBIHelPyl33062_1242. DR eggNOG; COG3338; LUCA. DR KO; K01674; -. DR OMA; SEEGHEF; -. DR OrthoDB; EOG65N1DV; -. DR BioCyc; HPY:HP1186-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.10.200.10; -; 1. DR InterPro; IPR001148; Carbonic_anhydrase_a. DR InterPro; IPR023561; Carbonic_anhydrase_a-class. DR PANTHER; PTHR18952; PTHR18952; 1. DR Pfam; PF00194; Carb_anhydrase; 1. DR SMART; SM01057; Carb_anhydrase; 1. DR SUPFAM; SSF51069; SSF51069; 1. DR PROSITE; PS51144; ALPHA_CA_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 202 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158051. FT DOMAIN 21 202 Alpha-carbonic anhydrase. FT {ECO:0000259|PROSITE:PS51144}. SQ SEQUENCE 202 AA; 23216 MW; A16C1472AAEC3D00 CRC64; MKKTFLIALA LTASLVGAEN TKWDYKNKEN GPHRWDKLHK DFEVCKSGKS QSPINIEHYY HTQDKADLQF KYAASKPKAV FFTHHTLKAS FEPTNHINYR GHDYVLDNVH FHAPMEFLIN NKTRPLSAHF VHKDAKGRLL VLAIGFEEGK ENPNLDPILE GIQKKQNFKE VALDAFLPKS INYYHLTALS PLLLAQRGWH GL // ID O25472_HELPY Unreviewed; 165 AA. AC O25472; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07836.1}; GN OrderedLocusNames=HP_0783 {ECO:0000313|EMBL:AAD07836.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07836.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07836.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07836.1; -; Genomic_DNA. DR PIR; G64617; G64617. DR RefSeq; NP_207576.1; NC_000915.1. DR RefSeq; WP_010875545.1; NC_000915.1. DR ProteinModelPortal; O25472; -. DR PaxDb; O25472; -. DR PRIDE; O25472; -. DR EnsemblBacteria; AAD07836; AAD07836; HP_0783. DR GeneID; 898962; -. DR KEGG; hpy:HP0783; -. DR PATRIC; 20592855; VBIHelPyl33062_0816. DR OMA; WALPFYF; -. DR OrthoDB; EOG6M6JNJ; -. DR BioCyc; HPY:HP0783-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 165 AA; 18614 MW; 3C24BA68805F5778 CRC64; MALPFYFVSA LAAIDIDEVT EAQANSVKLS DQLVSLSDKL LEKAVDRGRN TDHLKDLNDL HEKIKHLRLI LEPKPKDKEN NPNLKDHQGS ETIEIGETIK KALGEPVFPQ DALDAALQID KQLDSFKQDN LIDVKPLKDV LAQLEAELRK AINFQKQWLN STKPN // ID O25354_HELPY Unreviewed; 150 AA. AC O25354; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07714.1}; GN OrderedLocusNames=HP_0637 {ECO:0000313|EMBL:AAD07714.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07714.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07714.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07714.1; -; Genomic_DNA. DR PIR; E64599; E64599. DR RefSeq; NP_207431.1; NC_000915.1. DR RefSeq; WP_000554116.1; NC_018939.1. DR ProteinModelPortal; O25354; -. DR IntAct; O25354; 1. DR STRING; 85962.HP0637; -. DR PaxDb; O25354; -. DR EnsemblBacteria; AAD07714; AAD07714; HP_0637. DR GeneID; 898922; -. DR KEGG; heo:C694_03295; -. DR KEGG; hpy:HP0637; -. DR PATRIC; 20592559; VBIHelPyl33062_0668. DR OMA; YMPYYYM; -. DR OrthoDB; EOG64R676; -. DR BioCyc; HPY:HP0637-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 41 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 150 AA; 16894 MW; D973548592430EDF CRC64; MHQNNKTFLP SQSAHLSKII LFLNTGFLAY LLSACGANVP IEEVLVKDPK ETKAQEVARE EKAIQQENAT IDARTTPLIN RFTNYSAYGS LNGFYNSVDN LNSPMQNGMY GGYYMPYYYM PYGFMPYGSG LMPYGPYGYG APGYFPYAFY // ID O25251_HELPY Unreviewed; 38 AA. AC O25251; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07581.1}; GN OrderedLocusNames=HP_0511 {ECO:0000313|EMBL:AAD07581.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07581.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07581.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07581.1; -; Genomic_DNA. DR PIR; G64583; G64583. DR RefSeq; NP_207308.1; NC_000915.1. DR RefSeq; WP_000849509.1; NC_018939.1. DR IntAct; O25251; 1. DR STRING; 85962.HP0511; -. DR PaxDb; O25251; -. DR EnsemblBacteria; AAD07581; AAD07581; HP_0511. DR GeneID; 899263; -. DR KEGG; heo:C694_02625; -. DR KEGG; hpy:HP0511; -. DR PATRIC; 20592297; VBIHelPyl33062_0537. DR OrthoDB; EOG6RNQKW; -. DR BioCyc; HPY:HP0511-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 38 AA; 4028 MW; 350FAFC2C42D9A9F CRC64; MKTIRNSVFI GASLLGGCAS VEAYFDALHV ARVKDACL // ID O25433_HELPY Unreviewed; 521 AA. AC O25433; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07792.1}; GN OrderedLocusNames=HP_0733 {ECO:0000313|EMBL:AAD07792.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07792.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07792.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07792.1; -; Genomic_DNA. DR PIR; E64611; E64611. DR ProteinModelPortal; O25433; -. DR IntAct; O25433; 2. DR STRING; 85962.HP0733; -. DR PaxDb; O25433; -. DR PRIDE; O25433; -. DR EnsemblBacteria; AAD07792; AAD07792; HP_0733. DR PATRIC; 20592751; VBIHelPyl33062_0764. DR eggNOG; ENOG4106IY3; Bacteria. DR eggNOG; ENOG410Y946; LUCA. DR OMA; KHELQKG; -. DR OrthoDB; EOG60CWK4; -. DR BioCyc; HPY:HP0733-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 3. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01926; MMR_HSR1; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 65 224 G (guanine nucleotide-binding). FT {ECO:0000259|Pfam:PF01926}. FT COILED 12 57 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 521 AA; 60596 MW; D0888A61BE5EA119 CRC64; MKNIYLDVKA SIENLQNIFK NTDNENERLK KFNQEALEVF QKLERESLKE LESLKNNEEW ENFTIAFYGE TGAGKSTFIE CLRMFFKEQS KVVQQERFKR LYSNYQNNYQ NDECKKQAIL NELHSLQDGA IIGDGRSDFT LKTRSYSFQY NHQNFTLLDV PGIEGDEKKV IDQISNATQK AHAIFYVTKT PNPPQKGEEK KEGTIEKIQK QLDSQTEVWT IFNKPINNPR AFKDGLIDGS EKESLKILNK EMKNILGKHY KGYKAVSAQV AFYGLSSALI PGTDFDKNKQ KFLKDFKARE LLYQSHFQQL GEFIAEELIK NSRAKIIQSN CNKALKVVEQ LQKAIEITIE KRIDPMIKEA QEYQHEARYN LDRSTDKFIL NLTNSAFYEI DQFKSDLREK MYAHINKNIE DEECKEIFKN ELIQGIETLH EDIKWRFREC EKRFDGEIKE AIKQLEYRIK DSLAMLERIS IDRDFNLNFD TDSGIDGTKL ATSIGGLGLL GIFNAWNPMG WLALTAGLLQ D // ID O25335_HELPY Unreviewed; 111 AA. AC O25335; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07688.1}; GN OrderedLocusNames=HP_0614 {ECO:0000313|EMBL:AAD07688.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07688.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07688.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07688.1; -; Genomic_DNA. DR PIR; F64596; F64596. DR RefSeq; NP_207409.1; NC_000915.1. DR RefSeq; WP_000969950.1; NC_000915.1. DR ProteinModelPortal; O25335; -. DR DIP; DIP-3463N; -. DR IntAct; O25335; 3. DR MINT; MINT-186599; -. DR STRING; 85962.HP0614; -. DR PaxDb; O25335; -. DR PRIDE; O25335; -. DR EnsemblBacteria; AAD07688; AAD07688; HP_0614. DR GeneID; 899291; -. DR KEGG; hpy:HP0614; -. DR PATRIC; 20592507; VBIHelPyl33062_0642. DR OMA; EKGFPNR; -. DR OrthoDB; EOG615VP7; -. DR BioCyc; HPY:HP0614-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 11 38 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 111 AA; 12983 MW; 3555E830FCA07278 CRC64; MMEHHKVHTT IQALQAKRKK LLTELAELEA EIKVSSERKS SFNISLSPSL LAEIEEIEYE EKTSKERRIN HSVLLSPSFM AKVDEYMKEK GFSNRSLLFE KALEFYMLKH P // ID O25196_HELPY Unreviewed; 128 AA. AC O25196; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07517.1}; GN OrderedLocusNames=HP_0448 {ECO:0000313|EMBL:AAD07517.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07517.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07517.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07517.1; -; Genomic_DNA. DR PIR; H64575; H64575. DR RefSeq; NP_207246.1; NC_000915.1. DR RefSeq; WP_000691910.1; NC_018939.1. DR ProteinModelPortal; O25196; -. DR DIP; DIP-3429N; -. DR IntAct; O25196; 2. DR MINT; MINT-165036; -. DR STRING; 85962.HP0448; -. DR PaxDb; O25196; -. DR PRIDE; O25196; -. DR EnsemblBacteria; AAD07517; AAD07517; HP_0448. DR GeneID; 899244; -. DR KEGG; hpy:HP0448; -. DR PATRIC; 20592155; VBIHelPyl33062_0466. DR OMA; YCVELEI; -. DR BioCyc; HPY:HP0448-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 128 AA; 14824 MW; CBD080D41C98E9A0 CRC64; MKIISFENDS VCDKHLLIPC RIYCVELEIR HNDLGLNAIE KCALKLKESG VKDEELKGFL GFGGELDLLE PILEKIETKT LEEYKKIHAH FYYNLINQEF LHFVDLERVR AIDGKEVKCP TAKDDWAS // ID O26021_HELPY Unreviewed; 365 AA. AC O26021; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08522.1}; GN OrderedLocusNames=HP_1487 {ECO:0000313|EMBL:AAD08522.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08522.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08522.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08522.1; -; Genomic_DNA. DR PIR; G64705; G64705. DR RefSeq; NP_208278.1; NC_000915.1. DR RefSeq; WP_000489051.1; NC_018939.1. DR ProteinModelPortal; O26021; -. DR DIP; DIP-3308N; -. DR IntAct; O26021; 2. DR MINT; MINT-178500; -. DR STRING; 85962.HP1487; -. DR PaxDb; O26021; -. DR EnsemblBacteria; AAD08522; AAD08522; HP_1487. DR GeneID; 899805; -. DR KEGG; heo:C694_07700; -. DR KEGG; hpy:HP1487; -. DR PATRIC; 20594385; VBIHelPyl33062_1561. DR eggNOG; ENOG4108MUS; Bacteria. DR eggNOG; COG0842; LUCA. DR KO; K01992; -. DR OMA; YTAPSFA; -. DR OrthoDB; EOG600DKS; -. DR BioCyc; HPY:HP1487-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 180 199 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 211 233 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 245 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 276 295 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 337 358 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 365 AA; 41090 MW; 154990B69FC0FA5E CRC64; MFRLISAWVL QDKFLFIVCF ILPFCLGVLG TQIFKQEIPR QLPIVVVDLD KTTTSHQVAF ELGATSALQI KHQVASLLEA KRFLNSAEAY GALVLPRDLE KKIKMGRKVD LPFYYNAEYV LVGKTLKNAF LQTALTLDAK TLATKALVRD SNLISAKAQA MPIVLQLHAL YNEENNYTQY LLSVMLPCMW LIFIAIGMLN FIQKASNMRE LLISIVANVC VFSFWGMGMA FYFNLIGMEG HYAHLSLVFL AVVLMTLIMS GFVVLVYGVS KSAIETAGAI GVYTAPSFAF AGVTYPQNNM EIFGDFWSHC LPISHFMRFF LQEAYYKTDF TESLNSLMPL VFFLIFLVLG LLIFYFSFKK GKASA // ID O25999_HELPY Unreviewed; 225 AA. AC O25999; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08508.1}; GN OrderedLocusNames=HP_1463 {ECO:0000313|EMBL:AAD08508.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08508.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08508.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08508.1; -; Genomic_DNA. DR PIR; G64702; G64702. DR RefSeq; NP_208254.1; NC_000915.1. DR RefSeq; WP_001202825.1; NC_018939.1. DR ProteinModelPortal; O25999; -. DR IntAct; O25999; 2. DR STRING; 85962.HP1463; -. DR PaxDb; O25999; -. DR EnsemblBacteria; AAD08508; AAD08508; HP_1463. DR GeneID; 899830; -. DR KEGG; heo:C694_07575; -. DR KEGG; hpy:HP1463; -. DR PATRIC; 20594337; VBIHelPyl33062_1537. DR KO; K18480; -. DR OMA; WIDLPRN; -. DR OrthoDB; EOG6D2KT1; -. DR BioCyc; HPY:HP1463-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.10610; -; 1. DR InterPro; IPR005586; ABC_trans_aux. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 225 AA; 24841 MW; 4DE5AB9EA40592B5 CRC64; MRATAIKIFS LSSALALLLH GCLSINLKQM LPEIRTYDLN ASSFEITQCA KPLTEVRLIS ILSADLFNTK EIVFKAKDGQ ITHGKHQKWI DLPRNMLKTM FMQEAQKACL GVALPPYGAG APTYAVRFTI LSFSLLEKEN STYRAEFALG YDISVKGDSH SGVIIKHENI SSLENKTTKT SKNGNQDFQE SAIQSLQHVS VQAIQEAVSL IKKAIEAQSV SPLKK // ID O25373_HELPY Unreviewed; 414 AA. AC O25373; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07729.1}; GN OrderedLocusNames=HP_0659 {ECO:0000313|EMBL:AAD07729.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07729.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07729.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07729.1; -; Genomic_DNA. DR PIR; C64602; C64602. DR RefSeq; NP_207453.1; NC_000915.1. DR RefSeq; WP_001225999.1; NC_018939.1. DR ProteinModelPortal; O25373; -. DR IntAct; O25373; 1. DR STRING; 85962.HP0659; -. DR PaxDb; O25373; -. DR EnsemblBacteria; AAD07729; AAD07729; HP_0659. DR GeneID; 899005; -. DR KEGG; heo:C694_03410; -. DR KEGG; hpy:HP0659; -. DR PATRIC; 20592603; VBIHelPyl33062_0690. DR eggNOG; ENOG4105MM2; Bacteria. DR eggNOG; COG0760; LUCA. DR OMA; HLEMQEL; -. DR OrthoDB; EOG6PGK4M; -. DR BioCyc; HPY:HP0659-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR015391; SurA_N. DR InterPro; IPR027304; Trigger_fact/SurA_dom. DR Pfam; PF09312; SurA_N; 1. DR SUPFAM; SSF109998; SSF109998; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 414 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157732. FT DOMAIN 179 259 SurA_N. {ECO:0000259|Pfam:PF09312}. FT COILED 39 77 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 414 AA; 47633 MW; D8838F88817BE846 CRC64; MRKIFSYVLK ALLFIGIVYA EPESKVEALE GRKQESSLDK KIRQELKNKD LKNKELKNKK EEKKNTEEKK ETKAKRKPRA EVHHGDTKNP TQKITPPKIK ENAKGVQNQG VQSNAPKLEE KDTTSQTLEK KGASPSSQFN SIFGNPNDAA NNTLEDKVVG GISLLVNGSP ITLYQIQEEQ EKSKVSKAQA RDRLIAERIK NQEIERLKIH VDDDKLDQEM AMMAQQQGMD LDHFKQMLMA EGHYKLYRDQ LKEHLEMQEL LRNILLTNVD TSSETKMREY YNKHKEQFSI PTEIETVRYT STNQEDLERA MADPNLEIPG VSKANEKIEM KTLNPQIAQV FISHEQGSFT PVMNGGGGQF ITFYIKEKKG KNEVSFSQAK QFIAQKLVEE SKDKILEEHF EKLRVKSRIV MIRE // ID O25673_HELPY Unreviewed; 178 AA. AC O25673; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08084.1}; GN OrderedLocusNames=HP_1029 {ECO:0000313|EMBL:AAD08084.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08084.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08084.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:4TSD} RP X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) IN COMPLEX WITH ZINC. RX PubMed=26096900; DOI=10.1111/febs.13344; RA Vallese F., Percudani R., Fischer W., Zanotti G.; RT "The crystal structure of Helicobacter pylori HP1029 highlights the RT functional diversity of the sialic acid-related DUF386 family."; RL FEBS J. 282:3311-3322(2015). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08084.1; -; Genomic_DNA. DR PIR; E64648; E64648. DR RefSeq; NP_207819.1; NC_000915.1. DR RefSeq; WP_000964040.1; NC_018939.1. DR PDB; 4TSD; X-ray; 1.53 A; A/B=1-178. DR PDBsum; 4TSD; -. DR ProteinModelPortal; O25673; -. DR STRING; 85962.HP1029; -. DR PaxDb; O25673; -. DR EnsemblBacteria; AAD08084; AAD08084; HP_1029. DR GeneID; 899564; -. DR KEGG; heo:C694_05325; -. DR KEGG; hpy:HP1029; -. DR PATRIC; 20593395; VBIHelPyl33062_1078. DR eggNOG; ENOG41084B4; Bacteria. DR eggNOG; COG2731; LUCA. DR OMA; IEQSYCL; -. DR OrthoDB; EOG6ZPT54; -. DR BioCyc; HPY:HP1029-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 2.60.120.370; -; 1. DR InterPro; IPR004375; YhcH/YjgK/YiaL. DR Pfam; PF04074; DUF386; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:4TSD}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000213|PDB:4TSD}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Zinc {ECO:0000213|PDB:4TSD}. FT METAL 81 81 Zinc; via tele nitrogen. FT {ECO:0000213|PDB:4TSD}. FT METAL 86 86 Zinc. {ECO:0000213|PDB:4TSD}. FT METAL 145 145 Zinc; via tele nitrogen. FT {ECO:0000213|PDB:4TSD}. SQ SEQUENCE 178 AA; 20294 MW; BB5571BC3974DB17 CRC64; MAIFGELSSL GHLFKKTQEL EILHEYLKEV MQKGSKANQR VLNLATNTEF QVPLGHGIFS IEQSYCLEHA KESEKGFFES HKKYVDFQLI VKGVEGAKAV GINQAVIKNP YDEKRDLIVY EPVSEASFLR LHAGMLAIFF ENDAHALRFY GESFEKYREE PIFKAVVKAP KGLIKLKL // ID O25419_HELPY Unreviewed; 578 AA. AC O25419; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 113. DE SubName: Full=DNA polymerase III gamma and tau subunits (DnaX) {ECO:0000313|EMBL:AAD07767.1}; GN OrderedLocusNames=HP_0717 {ECO:0000313|EMBL:AAD07767.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07767.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07767.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07767.1; -; Genomic_DNA. DR PIR; E64609; E64609. DR RefSeq; NP_207511.1; NC_000915.1. DR RefSeq; WP_001197484.1; NC_018939.1. DR ProteinModelPortal; O25419; -. DR DIP; DIP-3354N; -. DR IntAct; O25419; 5. DR MINT; MINT-183607; -. DR STRING; 85962.HP0717; -. DR PaxDb; O25419; -. DR EnsemblBacteria; AAD07767; AAD07767; HP_0717. DR GeneID; 900238; -. DR KEGG; heo:C694_03690; -. DR KEGG; hpy:HP0717; -. DR PATRIC; 20592721; VBIHelPyl33062_0749. DR eggNOG; ENOG4107QMP; Bacteria. DR eggNOG; COG2812; LUCA. DR KO; K02343; -. DR OMA; EMMLFLK; -. DR OrthoDB; EOG6WQD76; -. DR BioCyc; HPY:HP0717-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009360; C:DNA polymerase III complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR012763; DNA_pol_III_sug/sutau. DR InterPro; IPR027417; P-loop_NTPase. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR02397; dnaX_nterm; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 35 177 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 578 AA; 66245 MW; 38C3471732AD5275 CRC64; MQVLALKYRP KHFSELVGQE SVAKTLSLAL DNQRLANAYL FSGLRGSGKT SSSRIFARAL MCEEGPKAVP CDTCIQCQSA LNNHHIDIIE MDGASNRGID DVRNLIEQTR YKPSFGRYKI FIIDEVHMFT TEAFNALLKT LEEPPSHVKF LLATTDALKL PATILSRTQH FRFKKIPENS VISHLKTILE KEQVSYETSA LEKLAHSGQG SLRDTITLLE QAINYCDNAI TESKVAEMLG AIDRSVLEDF FQSLINQDEA RLKERYAILE NYETESVLEE MMLFLKAKLL SPDFYSILLI ERFFKIIMSS LSLLKEGANA SFVLLLLKMK FKEALKFKAL DDAILELEQT PFNQNPSISY NAPKQESKNI EKREKIEQIE RIEGTEKREK LEKKENAETP QTPMLSAKDR IFHNLFKQVQ TLVYERNYEL GAVFEKNIRF IDFDSQTKTL TWESLATDKD KELLRERFKI VKSIVDGVFG KGESIKIALK NHSENKSTLE VVKELKFPYS KPKPTTETTA ETKEKETKEK EIQENDTKEI QEVQPKQAPT ALQEFMANHS ELIEEIKSEF EIKSVELL // ID O25618_HELPY Unreviewed; 443 AA. AC O25618; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08017.1}; GN OrderedLocusNames=HP_0965 {ECO:0000313|EMBL:AAD08017.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08017.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08017.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08017.1; -; Genomic_DNA. DR PIR; E64640; E64640. DR RefSeq; NP_207757.1; NC_000915.1. DR RefSeq; WP_010875569.1; NC_018939.1. DR ProteinModelPortal; O25618; -. DR DIP; DIP-3514N; -. DR IntAct; O25618; 3. DR MINT; MINT-165440; -. DR STRING; 85962.HP0965; -. DR PaxDb; O25618; -. DR PRIDE; O25618; -. DR EnsemblBacteria; AAD08017; AAD08017; HP_0965. DR GeneID; 899498; -. DR KEGG; hpy:HP0965; -. DR PATRIC; 20593243; VBIHelPyl33062_1003. DR eggNOG; ENOG4107WR0; Bacteria. DR eggNOG; COG0699; LUCA. DR OMA; KEMQAED; -. DR OrthoDB; EOG6PP9HJ; -. DR BioCyc; HPY:HP0965-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR022812; Dynamin_SF. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00350; Dynamin_N; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 443 AA; 50174 MW; 59FE110E2C56FA1F CRC64; MNEQELIQKS ALIEKTLQEQ GLQERAGPFI SENAVIKTEE LEKTLKEMQA EDRDLKVGII GRVKAGKSSL LNALIFEGVE VLPKAATPMT ASLTILKYAK TLSAEVEFYS PKDILELKNE HARYEREFNR IVDEEVKRQK EKQSLSNRAK EGFKNVSKWL GKNKSTEAAP KERVLSDEEI NNRAERIAKS ELEKDTKLVS SHDQYERMKK SGSLNTENLD SHIQANSLQE LNQKLLQFVG ADRKYMPYTK AVQISLNNPN LKDLEVIDTP GVNDPIASRE ERTKALLKDC DVVFIISSSN QFLTESDMSL FDRVSNKESL QEIYFVASQA DSAVLSMSEV EKSRHHLPTA LENAQKSLSS SLNKTMEALI QTNPNQRGIF EKAIKNGVIL TSGACFSMYK DFKNQASWES KKEECYNAWR NLTNAYPLTL LTALINLKKA YYS // ID O26101_HELPY Unreviewed; 336 AA. AC O26101; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Methicillin resistance protein (Llm) {ECO:0000313|EMBL:AAD08619.1}; GN OrderedLocusNames=HP_1581 {ECO:0000313|EMBL:AAD08619.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08619.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08619.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08619.1; -; Genomic_DNA. DR PIR; E64717; E64717. DR RefSeq; NP_208372.1; NC_000915.1. DR RefSeq; WP_010875640.1; NC_018939.1. DR ProteinModelPortal; O26101; -. DR STRING; 85962.HP1581; -. DR PaxDb; O26101; -. DR EnsemblBacteria; AAD08619; AAD08619; HP_1581. DR GeneID; 899710; -. DR KEGG; heo:C694_08190; -. DR KEGG; hpy:HP1581; -. DR PATRIC; 20594589; VBIHelPyl33062_1662. DR eggNOG; ENOG4107UC5; Bacteria. DR eggNOG; COG0472; LUCA. DR OMA; KATMPDN; -. DR OrthoDB; EOG6GJBQT; -. DR BioCyc; HPY:HP1581-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008963; F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity; IEA:InterPro. DR InterPro; IPR000715; Glycosyl_transferase_4. DR PANTHER; PTHR22926; PTHR22926; 1. DR Pfam; PF00953; Glycos_transf_4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 21 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 141 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 148 166 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 190 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 218 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 224 243 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 298 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 304 323 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 336 AA; 37804 MW; 6FC2E862DE2FE576 CRC64; MLWVLYFLTS LFICSLIVLW SKKSMLFVDN ANKIQGFHHA RTPRAGGLGI FLSFVLAYLF EPFEAPFKGF FVFLGLLLVF LSGFLEDINL SLSPKIRLIL QAVGVVCIIS SMPLVVSDFS PLFSLPYFIA FLFAIFMLVG ISNAINIIDG FNGLASGICA ITLLVIHYIE PSSLACLLAY MVLGFMVLNF PLGKIFLGDG GAYFLGLVCG ISLLHLSLEQ KISVFFGLNL MLYPVIEVLF SILRRKIKRQ KATMPDNLHL HTLLFKYLQQ RSFNYPNPLC AFILILCNLP FILISVFFRL NPYALIAISL VFIACYLMGY AYLNRQVCAL EKRAFQ // ID O25050_HELPY Unreviewed; 177 AA. AC O25050; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07347.1}; GN OrderedLocusNames=HP_0272 {ECO:0000313|EMBL:AAD07347.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07347.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07347.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07347.1; -; Genomic_DNA. DR PIR; H64553; H64553. DR RefSeq; NP_207070.1; NC_000915.1. DR RefSeq; WP_001212813.1; NC_018939.1. DR ProteinModelPortal; O25050; -. DR DIP; DIP-3467N; -. DR IntAct; O25050; 2. DR MINT; MINT-181174; -. DR STRING; 85962.HP0272; -. DR PaxDb; O25050; -. DR EnsemblBacteria; AAD07347; AAD07347; HP_0272. DR GeneID; 900117; -. DR KEGG; heo:C694_01375; -. DR KEGG; hpy:HP0272; -. DR PATRIC; 20591771; VBIHelPyl33062_0283. DR eggNOG; ENOG4105VMA; Bacteria. DR eggNOG; ENOG4112200; LUCA. DR OMA; PIFDYSR; -. DR OrthoDB; EOG6WX4PG; -. DR BioCyc; HPY:HP0272-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 177 AA; 20663 MW; 47BC40DFCAA7CB10 CRC64; MRFSYIEPRA KYLISKLSKI WVFYIFLSFV VIGGLVWFMH NAIKSTQDNA SSLTIQERLY RHEISRLQVK TDETLKLIKE AKKRLNYNDD IRDVLQGLLN IVPDSITINS IEIDQQSVVV SGKTPSKEAF YFLFQNKLNP MFDYSRAEFF PLSDGWFNFV STNFSNSLLI KNPESIK // ID O25778_HELPY Unreviewed; 63 AA. AC O25778; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08214.1}; GN OrderedLocusNames=HP_1163 {ECO:0000313|EMBL:AAD08214.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08214.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08214.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08214.1; -; Genomic_DNA. DR PIR; C64665; C64665. DR RefSeq; NP_207954.1; NC_000915.1. DR RefSeq; WP_001090949.1; NC_018939.1. DR ProteinModelPortal; O25778; -. DR IntAct; O25778; 2. DR STRING; 85962.HP1163; -. DR PaxDb; O25778; -. DR EnsemblBacteria; AAD08214; AAD08214; HP_1163. DR GeneID; 899923; -. DR KEGG; heo:C694_06005; -. DR KEGG; hpy:HP1163; -. DR PATRIC; 20593677; VBIHelPyl33062_1217. DR eggNOG; ENOG41069ZY; Bacteria. DR eggNOG; ENOG41124Y7; LUCA. DR OMA; WVIAMML; -. DR OrthoDB; EOG6H1Q79; -. DR BioCyc; HPY:HP1163-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR004714; Cyt_oxidase_maturation_cbb3. DR Pfam; PF03597; FixS; 1. DR TIGRFAMs; TIGR00847; ccoS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 63 AA; 7102 MW; 46B097152E785ACC CRC64; MNTEILTIML VVSVLMGLVG LIAFLWGVKS GQFDDEKRML ESVLYDSASD LNEAILQEKR QKN // ID O24857_HELPY Unreviewed; 27 AA. AC O24857; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07085.1}; GN OrderedLocusNames=HP_0008 {ECO:0000313|EMBL:AAD07085.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07085.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07085.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07085.1; -; Genomic_DNA. DR PIR; H64520; H64520. DR RefSeq; WP_010875433.1; NC_018939.1. DR PaxDb; O24857; -. DR EnsemblBacteria; AAD07085; AAD07085; HP_0008. DR KEGG; heo:C694_00035; -. DR BioCyc; HPY:HP0008-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 27 AA; 3439 MW; A7A08DEAB871D320 CRC64; MRFCYWLVLF FWGFKKALFL SRSNKSY // ID O25129_HELPY Unreviewed; 30 AA. AC O25129; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07440.1}; GN OrderedLocusNames=HP_0365 {ECO:0000313|EMBL:AAD07440.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07440.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07440.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07440.1; -; Genomic_DNA. DR PIR; E64565; E64565. DR ProteinModelPortal; O25129; -. DR IntAct; O25129; 4. DR STRING; 85962.HP0365; -. DR PaxDb; O25129; -. DR PRIDE; O25129; -. DR EnsemblBacteria; AAD07440; AAD07440; HP_0365. DR BioCyc; HPY:HP0365-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 30 AA; 3246 MW; 99B61AF0C1132D43 CRC64; MAKLVDALDL GSSAARHEGS IPFFRTILND // ID O25874_HELPY Unreviewed; 217 AA. AC O25874; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Transcriptional regulator (TenA) {ECO:0000313|EMBL:AAD08332.1}; GN OrderedLocusNames=HP_1287 {ECO:0000313|EMBL:AAD08332.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08332.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08332.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08332.1; -; Genomic_DNA. DR PIR; G64680; G64680. DR RefSeq; NP_208079.1; NC_000915.1. DR RefSeq; WP_001198338.1; NC_018939.1. DR ProteinModelPortal; O25874; -. DR DIP; DIP-3726N; -. DR IntAct; O25874; 2. DR MINT; MINT-165617; -. DR STRING; 85962.HP1287; -. DR PaxDb; O25874; -. DR EnsemblBacteria; AAD08332; AAD08332; HP_1287. DR GeneID; 899910; -. DR KEGG; heo:C694_06650; -. DR KEGG; hpy:HP1287; -. DR PATRIC; 20593953; VBIHelPyl33062_1347. DR eggNOG; ENOG4105ETU; Bacteria. DR eggNOG; COG0819; LUCA. DR KO; K03707; -. DR OMA; CISHPFV; -. DR OrthoDB; EOG6JMMXP; -. DR BioCyc; HPY:HP1287-MONOMER; -. DR BRENDA; 3.5.99.2; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0050334; F:thiaminase activity; IEA:InterPro. DR GO; GO:0006772; P:thiamine metabolic process; IEA:InterPro. DR Gene3D; 1.20.910.10; -; 1. DR InterPro; IPR016084; Haem_Oase-like_multi-hlx. DR InterPro; IPR004305; Thiaminase-2/PQQC. DR InterPro; IPR027574; Thiaminase_II. DR Pfam; PF03070; TENA_THI-4; 1. DR SUPFAM; SSF48613; SSF48613; 1. DR TIGRFAMs; TIGR04306; salvage_TenA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 9 216 TENA_THI-4. {ECO:0000259|Pfam:PF03070}. SQ SEQUENCE 217 AA; 25038 MW; 2B8793E32FD148D2 CRC64; MQVSQYLYQN VQSIWGDCIS HPFVQGIGRG TLERDKFRFY IIQDYLFLLE YAKVFALGVV KACDEAVMRE FSNAIQDILN NEMSIHNHYI RGLQITQKEL QNARPTLANK SYTSYMLAEG FKGSIKEVAA AVLSCGWSYL VIAQNLSQIP NALEHAFYGH WIKGYSSKEF QACVNWNINL LDSLTLTSSK QEIEKLKDIF ITTSEYEYLF WDMAYQS // ID O25392_HELPY Unreviewed; 126 AA. AC O25392; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD14888.1}; GN OrderedLocusNames=HP_0682 {ECO:0000313|EMBL:AAD14888.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14888.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14888.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14888.1; -; Genomic_DNA. DR PIR; B64605; B64605. DR RefSeq; NP_207476.1; NC_000915.1. DR RefSeq; WP_010875521.1; NC_000915.1. DR ProteinModelPortal; O25392; -. DR IntAct; O25392; 3. DR STRING; 85962.HP0682; -. DR PaxDb; O25392; -. DR PRIDE; O25392; -. DR EnsemblBacteria; AAD14888; AAD14888; HP_0682. DR GeneID; 898965; -. DR KEGG; hpy:HP0682; -. DR PATRIC; 20592647; VBIHelPyl33062_0712. DR OMA; DKMGGFV; -. DR OrthoDB; EOG6TXR0K; -. DR BioCyc; HPY:HP0682-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 19 42 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 126 AA; 13553 MW; 6255882128B031BF CRC64; MCQTCLESQF LNLNFMKGFV MSGLRTFSCV VVLCGAMANV AIASPKIEAR GELGKFIGGG VGGFVGDKMG GFVGGAIGGY IGSEIGDRVE DYIRGVDREP QNKEPQAPRE PIRDLYDYGY SFGHAW // ID O25193_HELPY Unreviewed; 61 AA. AC O25193; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07521.1}; GN OrderedLocusNames=HP_0445 {ECO:0000313|EMBL:AAD07521.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07521.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07521.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07521.1; -; Genomic_DNA. DR PIR; E64575; E64575. DR ProteinModelPortal; O25193; -. DR IntAct; O25193; 6. DR STRING; 85962.HP0445; -. DR PaxDb; O25193; -. DR PRIDE; O25193; -. DR EnsemblBacteria; AAD07521; AAD07521; HP_0445. DR PATRIC; 20592149; VBIHelPyl33062_0463. DR OrthoDB; EOG66MQZS; -. DR BioCyc; HPY:HP0445-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 61 AA; 7347 MW; 5784B15F94B8C4D6 CRC64; MQFPLKKDLR ISQKYVIPKG FDPTNKEYKN FLVKDLPKLV HREVEIVMKL LFEINEVVDR D // ID O25563_HELPY Unreviewed; 223 AA. AC O25563; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Phosphotransacetylase (Pta) {ECO:0000313|EMBL:AAD07947.1}; GN OrderedLocusNames=HP_0905 {ECO:0000313|EMBL:AAD07947.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07947.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07947.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07947.1; -; Genomic_DNA. DR PIR; A64633; A64633. DR RefSeq; WP_001863234.1; NC_018939.1. DR ProteinModelPortal; O25563; -. DR STRING; 85962.HP0905; -. DR PaxDb; O25563; -. DR DNASU; 899434; -. DR EnsemblBacteria; AAD07947; AAD07947; HP_0905. DR KEGG; heo:C694_04660; -. DR PATRIC; 20593109; VBIHelPyl33062_0940. DR eggNOG; COG0857; LUCA. DR KO; K13788; -. DR OrthoDB; EOG6BKJ5W; -. DR BioCyc; HPY:HP0905-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 223 AA; 24848 MW; EA4089615356C219 CRC64; MQGLWIYPED TEVLGVACKS LLKALTPRYQ KVALFSPISG GCESLEECES LNPLEFHSAI SKQKALELAS TAQEELLFET ILKRYDELQS THDFVINLGC APKFFLNAPL DLNTILAKHL NASVVAVAQT SLEYLKAMHS HILKKEAPFA VGLFAGETLE KPHFLSMSLC KQQCELEADL IESVLQIKSE IITPLAFQRG LEKKAKKQIK KVVLPESEKM KGF // ID O24921_HELPY Unreviewed; 176 AA. AC O24921; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07170.1}; GN OrderedLocusNames=HP_0095 {ECO:0000313|EMBL:AAD07170.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07170.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07170.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07170.1; -; Genomic_DNA. DR PIR; G64531; G64531. DR RefSeq; NP_206895.1; NC_000915.1. DR RefSeq; WP_001125803.1; NC_018939.1. DR ProteinModelPortal; O24921; -. DR IntAct; O24921; 3. DR STRING; 85962.HP0095; -. DR PaxDb; O24921; -. DR EnsemblBacteria; AAD07170; AAD07170; HP_0095. DR GeneID; 900221; -. DR KEGG; heo:C694_00465; -. DR KEGG; hpy:HP0095; -. DR PATRIC; 20591401; VBIHelPyl33062_0100. DR OMA; IKWRTRS; -. DR OrthoDB; EOG615VJC; -. DR BioCyc; HPY:HP0095-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 176 AA; 20846 MW; 0B0E8D4E6A0899A7 CRC64; MPKPKKNTLP CSLSVKMSYF MRFLIKWRTR SLSHKMMTLI QILSILALAS KASEDLEEQL KKIKDYIYRT LNAKIASDVY NRVLILVNEY CTNEELFDKE SVKISDLLIQ DIQLYALVDE MLKEDKYQVQ HTILKGIIKR KYDEAYSLNS EDRILLEYQE RLLEHSHASF SNKKFK // ID O25553_HELPY Unreviewed; 95 AA. AC O25553; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07948.1}; GN OrderedLocusNames=HP_0893 {ECO:0000313|EMBL:AAD07948.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07948.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07948.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07948.1; -; Genomic_DNA. DR PIR; E64631; E64631. DR RefSeq; NP_207686.1; NC_000915.1. DR RefSeq; WP_001134157.1; NC_018939.1. DR ProteinModelPortal; O25553; -. DR DIP; DIP-3575N; -. DR IntAct; O25553; 15. DR MINT; MINT-184156; -. DR STRING; 85962.HP0893; -. DR PaxDb; O25553; -. DR EnsemblBacteria; AAD07948; AAD07948; HP_0893. DR GeneID; 899421; -. DR KEGG; heo:C694_04585; -. DR KEGG; hpy:HP0893; -. DR PATRIC; 20593075; VBIHelPyl33062_0925. DR OMA; FKKHCEN; -. DR OrthoDB; EOG6BW52F; -. DR BioCyc; HPY:HP0893-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 21 48 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 95 AA; 11356 MW; C25325B77E7615BC CRC64; MPNTTNKDYT KYSQRQLFSF LNSIKTKQKR ALEKLKEIQA QKQRIKKALQ FKALNLTENG YTIEEEREIL ARAKDTKNRL CFKSIEDFKK HCENL // ID O25167_HELPY Unreviewed; 105 AA. AC O25167; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07488.1}; GN OrderedLocusNames=HP_0411 {ECO:0000313|EMBL:AAD07488.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07488.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07488.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07488.1; -; Genomic_DNA. DR PIR; C64571; C64571. DR ProteinModelPortal; O25167; -. DR DIP; DIP-3423N; -. DR IntAct; O25167; 6. DR MINT; MINT-163759; -. DR STRING; 85962.HP0411; -. DR PaxDb; O25167; -. DR PRIDE; O25167; -. DR EnsemblBacteria; AAD07488; AAD07488; HP_0411. DR BioCyc; HPY:HP0411-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 105 AA; 11655 MW; E6EE528BD67DC065 CRC64; MPLLILAVFL KNYAQKLENS AIITLHVKIS GRSAVWLAHL VWDQGVEGSN PFAPTTFLHN LLFCLRFFGR ISLPFRMVGV AQSVRASDCG PEGRGFDSHL PPHLI // ID O25348_HELPY Unreviewed; 384 AA. AC O25348; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 100. DE SubName: Full=Quinone-reactive Ni/Fe hydrogenase, small subunit (HydA) {ECO:0000313|EMBL:AAD07691.1}; GN OrderedLocusNames=HP_0631 {ECO:0000313|EMBL:AAD07691.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07691.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07691.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07691.1; -; Genomic_DNA. DR PIR; G64598; G64598. DR RefSeq; NP_207425.1; NC_000915.1. DR RefSeq; WP_000499027.1; NC_018939.1. DR ProteinModelPortal; O25348; -. DR IntAct; O25348; 1. DR STRING; 85962.HP0631; -. DR PaxDb; O25348; -. DR EnsemblBacteria; AAD07691; AAD07691; HP_0631. DR GeneID; 899296; -. DR KEGG; heo:C694_03265; -. DR KEGG; hpy:HP0631; -. DR PATRIC; 20592545; VBIHelPyl33062_0661. DR eggNOG; ENOG4105E3S; Bacteria. DR eggNOG; COG1740; LUCA. DR KO; K05927; -. DR OMA; RSFNAHN; -. DR OrthoDB; EOG6J74S9; -. DR BioCyc; HPY:HP0631-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009375; C:ferredoxin hydrogenase complex; IEA:InterPro. DR GO; GO:0008901; F:ferredoxin hydrogenase activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.40.50.700; -; 1. DR Gene3D; 4.10.480.10; -; 1. DR InterPro; IPR027394; Cytochrome-c3_hydrogenase_C. DR InterPro; IPR006137; NADH_UbQ_OxRdtase-like_20kDa. DR InterPro; IPR001821; NiFe_hydrogenase_ssu. DR InterPro; IPR006311; TAT_signal. DR PANTHER; PTHR30013; PTHR30013; 1. DR Pfam; PF14720; NiFe_hyd_SSU_C; 1. DR Pfam; PF01058; Oxidored_q6; 1. DR PIRSF; PIRSF000310; NiFe_hyd_ssu; 1. DR PRINTS; PR00614; NIHGNASESMLL. DR TIGRFAMs; TIGR00391; hydA; 1. DR PROSITE; PS51318; TAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 86 230 Oxidored_q6. {ECO:0000259|Pfam:PF01058}. FT DOMAIN 251 333 NiFe_hyd_SSU_C. FT {ECO:0000259|Pfam:PF14720}. SQ SEQUENCE 384 AA; 42354 MW; 70B794CE70CB2F46 CRC64; MFYDEKKTYQ KIEERLDIVR SFNAHNEHKN LQDEFKGAGI SRRDLLKWAG MMSTALALPA SFAPLTLKAV EVANRLPVIW LHMAECTGCS ESLLRSADPT IDSIIFDYIN LEYHETIMVA SGFQAEKSLH DAIEKHKNNY ILMVEGGIPQ GTEYFLTQGP NAETGAEECR KAAQYAAAIF AIGTCSSFGG VQAAYPNPSN AQPLHKIIDK PVINVPGCPP SEKNIVGNVL YYLMFGALPK LDAYNRPSWA YGNRIHDLCE RRGHFDAGEF VEHFGDENAK RGFCLYKMGC KGPYTFNNCS KLRFNSHTSW PIGAGHGCIG CSEPNFWDTM SPFEEPLANR SIKTAFDGLG ADKVADKVGT TLLSATAIGI VAHALLSKAI KNKE // ID O26049_HELPY Unreviewed; 430 AA. AC O26049; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08565.1}; GN OrderedLocusNames=HP_1520 {ECO:0000313|EMBL:AAD08565.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08565.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08565.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08565.1; -; Genomic_DNA. DR PIR; H64709; H64709. DR ProteinModelPortal; O26049; -. DR STRING; 85962.HP1520; -. DR PaxDb; O26049; -. DR PRIDE; O26049; -. DR DNASU; 899771; -. DR EnsemblBacteria; AAD08565; AAD08565; HP_1520. DR PATRIC; 20594457; VBIHelPyl33062_1597. DR eggNOG; ENOG4108K3P; Bacteria. DR eggNOG; ENOG410XW40; LUCA. DR OMA; YREKKPE; -. DR OrthoDB; EOG6PP9HF; -. DR BioCyc; HPY:HP1520-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 104 128 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 430 AA; 50573 MW; 23DC6FE5E956B629 CRC64; MGLKIINIEN CYGIGKIQKT SLDFSKSNSY LLYAQNGVFK TSFAKSLTDL INNEMPKDNF YPNRKSKIEI EFNGEKILKE NVAVFHSYDE EFSSEDSVTT FMAKSDLKQQ YDNILLELEK EKKALLKSLR DIASGFDYEE EIKTIKNEKN KSFYEILDNH LTEIESSEKH YSFKYRDIFD GSKKVKDFVN KHHDLIEQYF NKYQELLSQS KIFKHMNSGD FGTNHADDLK KALENNRFFK ANHSLKIAGE EITNYQKLSD IFENEKNRIL NNEELKESFD KIEKVINANK ELKAFKDAIS KDNTLLTEFL DYDSFRKKVL FSYLKQVIQN VKSLVNLYRE KKPEIEEIIK QASKDQKEWE SVIEIFNQRF LVPFKVELQN QKDILLNKDA AQFRFIFSDD NQDMNVQKED LQKHLSGGEK ESVIYLTNLV // ID O25418_HELPY Unreviewed; 133 AA. AC O25418; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07766.1}; GN OrderedLocusNames=HP_0716 {ECO:0000313|EMBL:AAD07766.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07766.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07766.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07766.1; -; Genomic_DNA. DR PIR; D64609; D64609. DR RefSeq; NP_207510.1; NC_000915.1. DR RefSeq; WP_001202493.1; NC_018939.1. DR ProteinModelPortal; O25418; -. DR STRING; 85962.HP0716; -. DR PaxDb; O25418; -. DR EnsemblBacteria; AAD07766; AAD07766; HP_0716. DR GeneID; 899004; -. DR KEGG; heo:C694_03685; -. DR KEGG; hpy:HP0716; -. DR PATRIC; 20592719; VBIHelPyl33062_0748. DR eggNOG; ENOG41082Y0; Bacteria. DR eggNOG; COG0802; LUCA. DR KO; K06925; -. DR OMA; FHYDIYQ; -. DR OrthoDB; EOG6GBMHT; -. DR BioCyc; HPY:HP0716-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0002949; P:tRNA threonylcarbamoyladenosine modification; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003442; T6A_TsaE. DR Pfam; PF02367; TsaE; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00150; T6A_YjeE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 133 AA; 14970 MW; 26C35D7B13E6F23A CRC64; MRANLDELDK VAAAILKDDF KGVVLLKGVV GSGKTTLVQA CLKHLGLDIQ ATSPTFSLMH AYSESVFHYD FYMHDLKACL ELGMLECLLE KGIHFVEWGD EKLEKILKKY DLAIKVVEVK TESTSRFYTI KIA // ID O25542_HELPY Unreviewed; 291 AA. AC O25542; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07926.1}; GN OrderedLocusNames=HP_0874 {ECO:0000313|EMBL:AAD07926.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07926.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07926.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC P77872:katA; NbExp=3; IntAct=EBI-7585664, EBI-7585674; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07926.1; -; Genomic_DNA. DR PIR; B64629; B64629. DR RefSeq; NP_207668.1; NC_000915.1. DR RefSeq; WP_000829005.1; NC_018939.1. DR ProteinModelPortal; O25542; -. DR DIP; DIP-3560N; -. DR IntAct; O25542; 1. DR MINT; MINT-165980; -. DR STRING; 85962.HP0874; -. DR PaxDb; O25542; -. DR EnsemblBacteria; AAD07926; AAD07926; HP_0874. DR GeneID; 899403; -. DR KEGG; heo:C694_04475; -. DR KEGG; hpy:HP0874; -. DR PATRIC; 20593037; VBIHelPyl33062_0906. DR OMA; GRYERDD; -. DR OrthoDB; EOG60SCHQ; -. DR BioCyc; HPY:HP0874-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR019546; TAT_signal_bac_arc. DR TIGRFAMs; TIGR01409; TAT_signal_seq; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 291 AA; 32796 MW; 9E427010125ED2C7 CRC64; MKRRDFIKTT TLGATGAVLG AQILQAEESK GSVAKYKIEA QYSIDFDSAE HTSLFIPMPS VVASNVHLQG NHASYKSMLN FGVPYLQVDF LKSTQKKQVH LSYEIASYQL NERLFETSDF VAMGRYERDD ASVANIANQL KGTTPKESVR NFYAFIKHEM PKRQKALEGK ENLPKRESLP WFATISKESM FVSLCHACGI KSAEVQGLKL GQNSVVKNAP RVEVYLKDSF LAFDFQNNHK EVFIPLNRHK DMQLDSALLA TFGDAFALVD GRDLGNYESK LFEKRVSYTI V // ID O25091_HELPY Unreviewed; 254 AA. AC O25091; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Outer membrane protein (Omp10) {ECO:0000313|EMBL:AAD07398.1}; GN OrderedLocusNames=HP_0324 {ECO:0000313|EMBL:AAD07398.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07398.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07398.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07398.1; -; Genomic_DNA. DR PIR; D64560; D64560. DR RefSeq; NP_207122.1; NC_000915.1. DR RefSeq; WP_000773872.1; NC_000915.1. DR ProteinModelPortal; O25091; -. DR STRING; 85962.HP0324; -. DR PaxDb; O25091; -. DR PRIDE; O25091; -. DR EnsemblBacteria; AAD07398; AAD07398; HP_0324. DR GeneID; 899055; -. DR KEGG; hpy:HP0324; -. DR PATRIC; 20591881; VBIHelPyl33062_0338. DR OMA; IGFKFPT; -. DR OrthoDB; EOG6TR0C6; -. DR BioCyc; HPY:HP0324-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 254 AA; 28767 MW; 0F9368570EEF21A5 CRC64; MKLNLQEIQL RTLLKMLVGA SLLTHALIAK EESAAPSWTK NLYMGVNYQT GSINLMTNIH EVREVTNYQT GYTNIITSVN SVKKLTNMGS NGIGLVMGYN HFFHPDKILG LRYFAFLDWQ GYGMRYPKGY YGGNNMITYG VGVDAVWNFF QGSFYQDDIS VDIGVFGGIA IAGNSWYIGS KGQELLGITN SSAVDNTSFQ FLFNFGLKAL FVDEHEFEIG FKFPTINNKY YTTDALKVQM RRVFAFYVGY NYHF // ID O25729_HELPY Unreviewed; 208 AA. AC O25729; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=2-keto-3-deoxy-6-phosphogluconate aldolase (Eda) {ECO:0000313|EMBL:AAD08142.1}; GN OrderedLocusNames=HP_1099 {ECO:0000313|EMBL:AAD08142.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08142.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08142.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08142.1; -; Genomic_DNA. DR PIR; C64657; C64657. DR RefSeq; NP_207890.1; NC_000915.1. DR RefSeq; WP_001152804.1; NC_018939.1. DR ProteinModelPortal; O25729; -. DR STRING; 85962.HP1099; -. DR PaxDb; O25729; -. DR EnsemblBacteria; AAD08142; AAD08142; HP_1099. DR GeneID; 899635; -. DR KEGG; heo:C694_05670; -. DR KEGG; hpy:HP1099; -. DR PATRIC; 20593537; VBIHelPyl33062_1148. DR eggNOG; ENOG4108UHU; Bacteria. DR eggNOG; COG0800; LUCA. DR KO; K01625; -. DR OMA; KFFPAEY; -. DR OrthoDB; EOG67DPKT; -. DR BioCyc; HPY:HP1099-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR000887; Aldlse_KDPG_KHG. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR031337; KDPG/KHG_AS_1. DR InterPro; IPR031338; KDPG/KHG_AS_2. DR Pfam; PF01081; Aldolase; 1. DR TIGRFAMs; TIGR01182; eda; 1. DR PROSITE; PS00159; ALDOLASE_KDPG_KHG_1; 1. DR PROSITE; PS00160; ALDOLASE_KDPG_KHG_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 208 AA; 22616 MW; 881A42C1314199EB CRC64; MQDKIIEVLQ ISPIVPVVVI ENIKDAVPLA QSLIEGGIPI IEVTLRSSCA LEAIELIAKN MPKMRVGAGT ILNPTQLEQA QNRGAEFLIS PGLTIKLLEH AKKKDMPLIP GVSSSSEVMQ ALELGYSALK FFPAEYCGGV KLLNAFNGPF KGVKFCPTGG ISADNMRSYL NLENVLCVGG SWLTPKNLIQ NKEWDKITEI CKRALALR // ID O25261_HELPY Unreviewed; 199 AA. AC O25261; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Cag pathogenicity island protein (Cag6) {ECO:0000313|EMBL:AAD07593.1}; GN OrderedLocusNames=HP_0526 {ECO:0000313|EMBL:AAD07593.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07593.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07593.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O34461:HP_0424; NbExp=3; IntAct=EBI-9263582, EBI-7506839; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07593.1; -; Genomic_DNA. DR PIR; F64585; F64585. DR RefSeq; NP_207322.1; NC_000915.1. DR RefSeq; WP_000418809.1; NC_018939.1. DR ProteinModelPortal; O25261; -. DR SMR; O25261; 2-179. DR IntAct; O25261; 2. DR STRING; 85962.HP0526; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25261; -. DR EnsemblBacteria; AAD07593; AAD07593; HP_0526. DR GeneID; 898744; -. DR KEGG; heo:C694_02710; -. DR KEGG; hpy:HP0526; -. DR PATRIC; 20592327; VBIHelPyl33062_0552. DR KO; K12091; -. DR OMA; FNETERQ; -. DR OrthoDB; EOG62ZHTH; -. DR BioCyc; HPY:HP0526-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR015139; CagPAI_CagZ. DR Pfam; PF09053; CagZ; 1. DR SUPFAM; SSF109839; SSF109839; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 199 AA; 23017 MW; 68F2F32BAF61C814 CRC64; MELGFNEAER QKILDSNSSL MGNANEVRDK FIQNYASSLK DSNDPQDFLR RVQELRINMQ KNFISFDVYY NYLNNLVLAS YNRCKQEKTF AESTIKNELT LGEFVAEISD NFNNFMCDEV ARISDLVASY LPREYLPPFI DGNMMGVAFQ ILGIDDFGRK LNEIVQDIGT KYIILSKNKT YLTSLERAKL ITQLKLNLE // ID O25951_HELPY Unreviewed; 235 AA. AC O25951; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08444.1}; GN OrderedLocusNames=HP_1401 {ECO:0000313|EMBL:AAD08444.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08444.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08444.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08444.1; -; Genomic_DNA. DR PIR; A64695; A64695. DR RefSeq; NP_208192.1; NC_000915.1. DR RefSeq; WP_000995184.1; NC_018939.1. DR ProteinModelPortal; O25951; -. DR STRING; 85962.HP1401; -. DR PaxDb; O25951; -. DR EnsemblBacteria; AAD08444; AAD08444; HP_1401. DR GeneID; 899895; -. DR KEGG; heo:C694_07240; -. DR KEGG; hpy:HP1401; -. DR PATRIC; 20594191; VBIHelPyl33062_1466. DR eggNOG; ENOG4107VIU; Bacteria. DR eggNOG; COG1451; LUCA. DR KO; K07043; -. DR OMA; CLEYIVV; -. DR OrthoDB; EOG6WHNTR; -. DR BioCyc; HPY:HP1401-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002725; DUF45. DR Pfam; PF01863; DUF45; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 116 151 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 235 AA; 28138 MW; 313E3FB465E0F596 CRC64; MNAYCLTLND TNIAIEKKDI KHLHISVCPP DGSVHVSCPL ALNDESLRLS LIKRLHWIKE QQQNFLNQNR QSQRGMLERE SHYLFGKRYL LKIEHTTKKH FVLQNPKYLI LHVHQKTSLE NRLKVLENYY RQVLREKIQT CINRYEKILN ESIQSFKIQK MKRIWGSCNI AKRALLFNLE LAKVPRKGIE YVVVHELLHL KTRHHNEYFR DLLSLYLPNW QRAKASLKET YLERS // ID O24956_HELPY Unreviewed; 232 AA. AC O24956; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE SubName: Full=Cytochrome c oxidase, monoheme subunit, membrane-bound (FixO) {ECO:0000313|EMBL:AAD07215.1}; GN OrderedLocusNames=HP_0145 {ECO:0000313|EMBL:AAD07215.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07215.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07215.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07215.1; -; Genomic_DNA. DR PIR; A64538; A64538. DR RefSeq; NP_206944.1; NC_000915.1. DR RefSeq; WP_000490788.1; NC_018939.1. DR ProteinModelPortal; O24956; -. DR DIP; DIP-3242N; -. DR IntAct; O24956; 9. DR MINT; MINT-168255; -. DR STRING; 85962.HP0145; -. DR PaxDb; O24956; -. DR DNASU; 899007; -. DR EnsemblBacteria; AAD07215; AAD07215; HP_0145. DR GeneID; 899007; -. DR KEGG; heo:C694_00720; -. DR KEGG; hpy:HP0145; -. DR PATRIC; 20591509; VBIHelPyl33062_0154. DR eggNOG; ENOG4105DUJ; Bacteria. DR eggNOG; COG2993; LUCA. DR KO; K00405; -. DR OMA; TDWHENH; -. DR OrthoDB; EOG6RZB37; -. DR BioCyc; HPY:HP0145-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0009060; P:aerobic respiration; IEA:InterPro. DR Gene3D; 1.10.760.10; -; 2. DR InterPro; IPR000883; COX1. DR InterPro; IPR009056; Cyt_c-like_dom. DR InterPro; IPR003468; Cyt_c_oxidase_monohaem-su/FixO. DR PANTHER; PTHR10422; PTHR10422; 1. DR Pfam; PF02433; FixO; 1. DR SUPFAM; SSF46626; SSF46626; 2. DR TIGRFAMs; TIGR00781; ccoO; 1. DR PROSITE; PS51007; CYTC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 47 221 Cytochrome c. FT {ECO:0000259|PROSITE:PS51007}. SQ SEQUENCE 232 AA; 26548 MW; 21C85CCACD14F62C CRC64; MFSFLEKNPF FFTLAFIFVF AIAGLVEILP NFFKSARPIE GLRPYTVLET AGRQIYIQEG CYHCHSQLIR PFQAEVDRYG AYSLSGEYAY DRPFLWGSKR IGPDLHRVGD YRTTDWHEKH MFDPKSVVPH SIMPAYKHLF TKKSDFDTAY AEALTQKKVF GVPYDTENGV KLGSVEEAKK AYLEEAKKIT ADMKDKRVLE AIERGEVLEI VALIAYLNSL GNSRINANQN AK // ID O25850_HELPY Unreviewed; 133 AA. AC O25850; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 97. DE RecName: Full=NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; DE EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639}; GN OrderedLocusNames=HP_1260 {ECO:0000313|EMBL:AAD08306.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08306.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08306.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron- CC sulfur (Fe-S) centers, to quinones in the respiratory chain. CC {ECO:0000256|RuleBase:RU003639}. CC -!- CATALYTIC ACTIVITY: NADH + a quinone = NAD(+) + a quinol. CC {ECO:0000256|RuleBase:RU003639}. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU003639}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU003639}. CC -!- SIMILARITY: Belongs to the complex I subunit 3 family. CC {ECO:0000256|RuleBase:RU003639}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08306.1; -; Genomic_DNA. DR PIR; D64677; D64677. DR RefSeq; NP_208052.1; NC_000915.1. DR RefSeq; WP_001183543.1; NC_018939.1. DR ProteinModelPortal; O25850; -. DR STRING; 85962.HP1260; -. DR PaxDb; O25850; -. DR EnsemblBacteria; AAD08306; AAD08306; HP_1260. DR GeneID; 900263; -. DR KEGG; heo:C694_06515; -. DR KEGG; hpy:HP1260; -. DR PATRIC; 20593897; VBIHelPyl33062_1319. DR eggNOG; ENOG4105KWU; Bacteria. DR eggNOG; COG0838; LUCA. DR KO; K00330; -. DR OMA; IEMLGFV; -. DR OrthoDB; EOG6QVRQ6; -. DR BioCyc; HPY:HP1260-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW. DR InterPro; IPR000440; NADH_UbQ/plastoQ_OxRdtase_su3. DR PANTHER; PTHR11058; PTHR11058; 1. DR Pfam; PF00507; Oxidored_q4; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW NAD {ECO:0000256|RuleBase:RU003639}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003639}; KW Quinone {ECO:0000256|RuleBase:RU003639}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:AAD08306.1}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 92 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 120 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 133 AA; 15619 MW; 7F737775E0D65530 CRC64; MQQATEALNH PYFGVFVLLV FTFWVFNLTL RIQRFLSRKM AQKKGEKLKL APYECGPVAL KQPNRVSHHF YIMAMLFILF DVEIVFMFPW AIGFKKLGLF GLVEMLGFVF FLTIGFIYAL KRNALSWQKL EVK // ID O25075_HELPY Unreviewed; 329 AA. AC O25075; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07373.1}; GN OrderedLocusNames=HP_0304 {ECO:0000313|EMBL:AAD07373.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07373.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07373.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07373.1; -; Genomic_DNA. DR PIR; H64557; H64557. DR RefSeq; NP_207102.1; NC_000915.1. DR RefSeq; WP_000819954.1; NC_018939.1. DR ProteinModelPortal; O25075; -. DR DIP; DIP-3197N; -. DR IntAct; O25075; 5. DR MINT; MINT-170823; -. DR STRING; 85962.HP0304; -. DR PaxDb; O25075; -. DR EnsemblBacteria; AAD07373; AAD07373; HP_0304. DR GeneID; 900104; -. DR KEGG; heo:C694_01535; -. DR KEGG; hpy:HP0304; -. DR PATRIC; 20591835; VBIHelPyl33062_0315. DR OMA; AEQDYFF; -. DR OrthoDB; EOG6GBM7Q; -. DR BioCyc; HPY:HP0304-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:InterPro. DR GO; GO:0016829; F:lyase activity; IEA:InterPro. DR Gene3D; 1.50.10.110; -; 1. DR InterPro; IPR008397; Alginate_lyase_dom. DR InterPro; IPR008929; Chondroitin_lyas. DR Pfam; PF05426; Alginate_lyase; 1. DR SUPFAM; SSF48230; SSF48230; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 329 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157708. FT DOMAIN 32 280 Alginate_lyase. FT {ECO:0000259|Pfam:PF05426}. SQ SEQUENCE 329 AA; 37589 MW; 26ACCE2064C67BDF CRC64; MKRFVLFLLF MCVCVQAYAE QDYFFRDFKS RDLPQKLHLD KKLSQTIQPC MQLNASKHYT STGVREPDKC TKSFKKSALM SYDLALGYLV SKNKQYGLKA IEILNAWAKE LQSVDTYQSE DNINFYMPYM NMAYWFVKKA FPSPEYEDFI KRMRQYSQSA LNTNHGAWGI LFDVSSALAL DDNALLHNSA NRWQEWVFKA IDENGVIASA ITRSDTSDYH GGPTKGIKGI AYTNFALLAL TISGELLFEN GYDLWGSGAG KRLSVAYNKV ATWILNPETF PYFQPNLIGV HNNAYFIILA KHYSSPSANE LLKQGDLHED GFRLKLRSP // ID O25469_HELPY Unreviewed; 90 AA. AC O25469; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07833.1}; GN OrderedLocusNames=HP_0780 {ECO:0000313|EMBL:AAD07833.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07833.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07833.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07833.1; -; Genomic_DNA. DR PIR; D64617; D64617. DR RefSeq; NP_207573.1; NC_000915.1. DR RefSeq; WP_010875544.1; NC_000915.1. DR ProteinModelPortal; O25469; -. DR DIP; DIP-3759N; -. DR IntAct; O25469; 4. DR MINT; MINT-188145; -. DR STRING; 85962.HP0780; -. DR PaxDb; O25469; -. DR PRIDE; O25469; -. DR EnsemblBacteria; AAD07833; AAD07833; HP_0780. DR GeneID; 899343; -. DR KEGG; hpy:HP0780; -. DR PATRIC; 20592849; VBIHelPyl33062_0813. DR OMA; STRDYCI; -. DR OrthoDB; EOG67T5P2; -. DR BioCyc; HPY:HP0780-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 90 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157742. FT COILED 30 57 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 90 AA; 10228 MW; A07A8C2EFB9FA19C CRC64; MAVKKIVVSW CVALAFLSAD SAQANKAISN ADLIKEIRDL KKIISAQNTE INNLRKVQEV LSGQLGDMRK DILSTRDYCI SLRPYIYNWR // ID O25079_HELPY Unreviewed; 292 AA. AC O25079; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07375.1}; GN OrderedLocusNames=HP_0309 {ECO:0000313|EMBL:AAD07375.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07375.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07375.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07375.1; -; Genomic_DNA. DR PIR; E64558; E64558. DR RefSeq; NP_207107.1; NC_000915.1. DR RefSeq; WP_000850703.1; NC_018939.1. DR ProteinModelPortal; O25079; -. DR IntAct; O25079; 1. DR STRING; 85962.HP0309; -. DR PaxDb; O25079; -. DR EnsemblBacteria; AAD07375; AAD07375; HP_0309. DR GeneID; 898762; -. DR KEGG; heo:C694_01560; -. DR KEGG; hpy:HP0309; -. DR PATRIC; 20591845; VBIHelPyl33062_0320. DR eggNOG; ENOG4105CQP; Bacteria. DR eggNOG; COG0388; LUCA. DR OMA; NLRNGRE; -. DR OrthoDB; EOG6NWBNF; -. DR BioCyc; HPY:HP0309-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 11 285 CN hydrolase. FT {ECO:0000259|PROSITE:PS50263}. SQ SEQUENCE 292 AA; 32632 MW; 3F1ECED12740000F CRC64; MKTKNPAKRI LKTAVIQMQS KPYALNENLQ LALNLAKEAH DKGANLIVLP ELFDSGYFVN DKDADFGLDF KAIEHSELKS ETLRALSDFA KSNKVHLVAC SIEKTNQKLY DSAYIIPPKV GIVGKHRKIY LWGDEKSRFR RGKKYEVFTL DFGDFSAKVG LQICYEIGFG VGANLLALQG AEVLIYPSAF GKARAYNWDL LSRARALENG CFVCACNHNG EETNAQLKQT LEFAGDSRII APNGKIIAQA TKLNEVIIAE MDLNEVALQR QKIPYLQDFD TKLTKKGFGK FT // ID O24875_HELPY Unreviewed; 741 AA. AC O24875; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 116. DE SubName: Full=ATP-dependent C1p protease (ClpA) {ECO:0000313|EMBL:AAD07102.1}; GN OrderedLocusNames=HP_0033 {ECO:0000313|EMBL:AAD07102.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07102.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07102.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ClpA/ClpB family. CC {ECO:0000256|RuleBase:RU004432}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07102.1; -; Genomic_DNA. DR PIR; A64524; A64524. DR RefSeq; NP_206835.1; NC_000915.1. DR RefSeq; WP_001051514.1; NC_018939.1. DR ProteinModelPortal; O24875; -. DR SMR; O24875; 158-349. DR DIP; DIP-3404N; -. DR IntAct; O24875; 12. DR MINT; MINT-178062; -. DR STRING; 85962.HP0033; -. DR PaxDb; O24875; -. DR EnsemblBacteria; AAD07102; AAD07102; HP_0033. DR GeneID; 899138; -. DR KEGG; heo:C694_00155; -. DR KEGG; hpy:HP0033; -. DR PATRIC; 20591265; VBIHelPyl33062_0034. DR eggNOG; ENOG4105C2Z; Bacteria. DR eggNOG; COG0542; LUCA. DR KO; K03694; -. DR OMA; EYKEAHS; -. DR OrthoDB; EOG65F8SM; -. DR BioCyc; HPY:HP0033-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.1780.10; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR019489; Clp_ATPase_C. DR InterPro; IPR004176; Clp_N. DR InterPro; IPR001270; ClpA/B. DR InterPro; IPR018368; ClpA/B_CS1. DR InterPro; IPR028299; ClpA/B_CS2. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 1. DR Pfam; PF07724; AAA_2; 1. DR Pfam; PF10431; ClpB_D2-small; 1. DR PRINTS; PR00300; CLPPROTEASEA. DR SMART; SM00382; AAA; 2. DR SMART; SM01086; ClpB_D2-small; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF81923; SSF81923; 1. DR PROSITE; PS00870; CLPAB_1; 1. DR PROSITE; PS00871; CLPAB_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU004433, KW ECO:0000256|SAAS:SAAS00463698}; KW Chaperone {ECO:0000256|RuleBase:RU004433, KW ECO:0000256|SAAS:SAAS00480820}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD07102.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004433, KW ECO:0000256|SAAS:SAAS00463698}; KW Protease {ECO:0000313|EMBL:AAD07102.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Repeat {ECO:0000256|SAAS:SAAS00417491}. FT DOMAIN 196 341 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 475 639 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 638 727 ClpB_D2-small. FT {ECO:0000259|SMART:SM01086}. SQ SEQUENCE 741 AA; 83254 MW; B26488DC06710195 CRC64; MAKFNQDLNE VLNQALNLAL DLNHALCTTE HVLLVILEHE SGEKIIGTLE RDDYDKLKQI LKDYLLQYVP LKSDPAKMPA RSFVLLRMLK RMYASCFESV GVEELLILML DHPDCYASKL MDSFGIARLY SNPALLDLDN HGIPNDINDN EEAPKNTPLK KYAKNLSALA QDNALDPVIG REEEILRVIE ILGRRKKNNP LLIGEAGVGK TSIAEALALK IAQKEVPEFL QEYEVYSLDL ALMVAGAKYR GDFEKRLKKT LKEIQQNGRI ILFIDEIHTL LGTGSSNAGS LDAANILKPV LTDGSLKCLG ATTFEEYRSV FEKDKAFNRR FSVIKVEEPS KEACYLILKK IAPLYEEHHQ VRYDESVFKA CVDLTSDYMH DKFLPDKAIE LLDEVGSRKK ISPKKGKKIG VDDVKETLAL KLKIPKMRLS SDKKALLRNL EKSLKNKIFA QAEAISLVSN AIKIQHCGLS AKNKPVGSFL FVGPSGVGKT ELAKELALNL NLHFERFDMS EYKEAHSVAK LIGSPSGYVG FEQGGLLVNA IKKHPHCLLL LDEIEKAHSN VYDLLLQVMD NATLSDNLGN QASFKHVILI MTSNVGSKDK DTLGFFSAKN TKYDKAVKEL LTPELRSRID AIVPFNALSL EDFERIVSVE LDKLKALALE QDITLKFHKE VVKFIAQKSY QTTLGAREIK KIIHNEIKTK LSDILLLQSF KKPCKIACLL EKNQLVLKEI KRAQKVKEND F // ID O25650_HELPY Unreviewed; 273 AA. AC O25650; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08051.1}; GN OrderedLocusNames=HP_1004 {ECO:0000313|EMBL:AAD08051.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08051.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08051.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08051.1; -; Genomic_DNA. DR PIR; D64645; D64645. DR ProteinModelPortal; O25650; -. DR STRING; 85962.HP1004; -. DR PaxDb; O25650; -. DR PRIDE; O25650; -. DR EnsemblBacteria; AAD08051; AAD08051; HP_1004. DR PATRIC; 20593333; VBIHelPyl33062_1048. DR eggNOG; ENOG4105XPN; Bacteria. DR eggNOG; COG3843; LUCA. DR OMA; CLFANSK; -. DR OrthoDB; EOG65J54B; -. DR BioCyc; HPY:HP1004-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005094; Endonuclease_MobA/VirD2. DR Pfam; PF03432; Relaxase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 273 AA; 32600 MW; 179856B2A4B5917A CRC64; MALEKSYSKN FESDELFDYE IIKPKKTLKI QYTYAKRYYK EVEKFAKNLT QLTQEEFMRL REPQKQVVIK NIGNMTRLHS KRAMDYIAKH GELVRDEFFN EVNYNDIAEQ WNEQFEKLLE NKSRVKNCAL HLVFSIDENC NEKNLKALEL SVYQTLTNTL GYDYPFIMKL HTHQNNPHAH VIINKTNKIT NKQLCFNSKD SCKEFYHTLR ETFKDYLFAN SKGELQYSNT PNIYKAIKDI ETELDALENR LETIRVLGMK TIFIKFWVVQ LLK // ID O25415_HELPY Unreviewed; 406 AA. AC O25415; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07769.1}; GN OrderedLocusNames=HP_0711 {ECO:0000313|EMBL:AAD07769.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07769.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07769.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07769.1; -; Genomic_DNA. DR PIR; G64608; G64608. DR RefSeq; NP_207505.1; NC_000915.1. DR RefSeq; WP_000270639.1; NC_018939.1. DR ProteinModelPortal; O25415; -. DR STRING; 85962.HP0711; -. DR PaxDb; O25415; -. DR DNASU; 899319; -. DR EnsemblBacteria; AAD07769; AAD07769; HP_0711. DR GeneID; 899319; -. DR KEGG; heo:C694_03660; -. DR KEGG; hpy:HP0711; -. DR PATRIC; 20592709; VBIHelPyl33062_0743. DR eggNOG; ENOG4105QTS; Bacteria. DR eggNOG; COG1896; LUCA. DR eggNOG; COG4940; LUCA. DR KO; K07023; -. DR OMA; ASKWEFD; -. DR OrthoDB; EOG6S52H0; -. DR BioCyc; HPY:HP0711-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.3210.10; -; 2. DR InterPro; IPR006674; HD_domain. DR Pfam; PF13023; HD_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 204 384 HD. {ECO:0000259|Pfam:PF13023}. SQ SEQUENCE 406 AA; 47297 MW; 2EC4C3A904FB5B75 CRC64; MYAAHPIKPL KAPKLKTQFL RRVFVGASIR RWNDQACPLE FVELDKQAHK AMIAYLLAKD LKDRGNDLDL DLLIKFFCFE FLERLVLTDI KPPIFYALQQ THSQELASYV VQSLQDEISM YFSLEELKEY LSHRPQILET QILESAHFYA SKWEFDIIYH FNPNMYGVKE IKDKIDKQLH NNEHLFEGLF GEKEDLKKLV SMFGQLRFQK RWSQTPRVPQ TSVLGHTLCV ALMGYLLSFD LKACKSMRIN HFLGGLFHDL PEILTRDIIT PIKQSVAGLD HCIKEIEKKE MQNKVYSFVS LGVQEDLKYF TENEFKNRYK DKSNKIIFTK DAEELFTLYN SDEYLGVCGE LLKVCDHLSA FLEAQISLSH GISSNDLIKG AQNLLELRSQ TELLDLDLGK LFRDFK // ID O25361_HELPY Unreviewed; 97 AA. AC O25361; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07705.1}; GN OrderedLocusNames=HP_0644 {ECO:0000313|EMBL:AAD07705.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07705.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07705.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07705.1; -; Genomic_DNA. DR PIR; D64600; D64600. DR RefSeq; NP_207438.1; NC_000915.1. DR RefSeq; WP_000577921.1; NC_018939.1. DR ProteinModelPortal; O25361; -. DR STRING; 85962.HP0644; -. DR PaxDb; O25361; -. DR EnsemblBacteria; AAD07705; AAD07705; HP_0644. DR GeneID; 898959; -. DR KEGG; heo:C694_03330; -. DR KEGG; hpy:HP0644; -. DR PATRIC; 20592573; VBIHelPyl33062_0675. DR eggNOG; ENOG41082BX; Bacteria. DR eggNOG; COG0762; LUCA. DR KO; K02221; -. DR OMA; VRPDPYN; -. DR OrthoDB; EOG69WFPS; -. DR BioCyc; HPY:HP0644-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR003425; CCB3/YggT. DR Pfam; PF02325; YGGT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 91 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 97 AA; 11254 MW; 51ABA9BFB2B2430A CRC64; MIFSTLINAI AVILSSLITI YMWIVIIYSL ISFVQPNPNN PIMQILARLC EPVFYFLRSR FKLVFNGLDF SPLVVVIVLK FLDLTLIQWL FMLAKNL // ID O25556_HELPY Unreviewed; 708 AA. AC O25556; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Outer membrane protein (Omp19) {ECO:0000313|EMBL:AAD07943.1}; GN OrderedLocusNames=HP_0896 {ECO:0000313|EMBL:AAD07943.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07943.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07943.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07943.1; -; Genomic_DNA. DR PIR; H64631; H64631. DR RefSeq; NP_207689.1; NC_000915.1. DR RefSeq; WP_000753173.1; NC_018939.1. DR ProteinModelPortal; O25556; -. DR DIP; DIP-3714N; -. DR IntAct; O25556; 2. DR MINT; MINT-166540; -. DR STRING; 85962.HP0896; -. DR PaxDb; O25556; -. DR EnsemblBacteria; AAD07943; AAD07943; HP_0896. DR GeneID; 899424; -. DR KEGG; heo:C694_04600; -. DR KEGG; hpy:HP0896; -. DR PATRIC; 20593083; VBIHelPyl33062_0929. DR OMA; TITCNSY; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP0896-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 708 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158562. SQ SEQUENCE 708 AA; 77693 MW; AAA780D4FE73ACB3 CRC64; MKKTLLLSLS LSLSFLLHAE DDGFYTSVGY QIGEAAQMVK NTKGIQELSD NYEKLNNLLN NYSTLNTLIK LSADPSAIND ARDNLGSSSR NLLDVKTNSP AYQAVLLALN AAVGLWQVTS YAFTACGPGS NENANGGIQT FNNVPGQDTT TITCNSYYEP GHGGPISTAN YAKINQAYQI IQKALTANGA NGDGVPVLSN TTTKLDFTIN GDKRTGGKPN TPEKFPWSDG KYIHTQWINT IVTPTETNIN TENNAQELLK QASIIITTLN EACPNFQNGG RSYWQGISGN GTMCGMFKNE ISAIQGMIAN AQEAVAQSKI VSENAQNQNN LDTGKPFNPY TDASFAQSML KNAQAQAEIL NQAEQVVKNF EKIPTAFVSD SLGVCYEVQG GERRGTNPGQ VTSNTWGAGC AYVKQTITNL DNSIAHFGTQ EQQIQQAENI ADTLVNFKSR YSELGNTYNS ITTALSKVPN AQSLQNVVSK KNNPYSPQGI ETNYYLNQNS YNQIQTINQE LGRNPFRKVG IVNSQTNNGA MNGIGIQVGY KQFFGQKRKW GARYYGFFDY NHAFIKSSFF NSASDVWTYG FGADALYNFI NDKATNFLGK NNKLSVGLFG GIALAGTSWL NSEYVNLATV NNVYNAKMNV ANFQFLFNMG VRMNLARSKK KGSDHAAQHG IELGLKIPTI NTNYYSFMGA ELKYRRLYSV YLNYVFAY // ID O25413_HELPY Unreviewed; 300 AA. AC O25413; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07762.1}; GN OrderedLocusNames=HP_0709 {ECO:0000313|EMBL:AAD07762.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07762.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07762.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07762.1; -; Genomic_DNA. DR PIR; E64608; E64608. DR RefSeq; NP_207503.1; NC_000915.1. DR RefSeq; WP_001232624.1; NC_018939.1. DR ProteinModelPortal; O25413; -. DR STRING; 85962.HP0709; -. DR PaxDb; O25413; -. DR DNASU; 898996; -. DR EnsemblBacteria; AAD07762; AAD07762; HP_0709. DR GeneID; 898996; -. DR KEGG; heo:C694_03650; -. DR KEGG; hpy:HP0709; -. DR PATRIC; 20592705; VBIHelPyl33062_0741. DR eggNOG; ENOG4105VDU; Bacteria. DR eggNOG; COG1912; LUCA. DR KO; K09134; -. DR OMA; VEIPYQK; -. DR OrthoDB; EOG63FW3R; -. DR BioCyc; HPY:HP0709-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 2.40.30.90; -; 1. DR InterPro; IPR002747; SAM_Chlor/Fluor. DR InterPro; IPR023227; SAM_OH_AdoTrfase_C. DR InterPro; IPR023228; SAM_OH_AdoTrfase_N. DR Pfam; PF01887; SAM_adeno_trans; 1. DR PIRSF; PIRSF006779; UCP006779; 1. DR SUPFAM; SSF101852; SSF101852; 1. DR SUPFAM; SSF102522; SSF102522; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 300 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157805. SQ SEQUENCE 300 AA; 33022 MW; 3A1C7235973BEBB6 CRC64; MRKTISALFL SACIGLSSVY ADNALILQTD FSLKDGAVSA MKGVAFSVDS HLKIFDLTHE IPPYNIWEGA YRLYQTASYW PKGSVFVSVV DPGVGTKRKS VVLKTKNGQY FVSPDNGTLT LVAQTLGIDS VREIDEKANR LKGSEKSYTF HGRDVYAYTG ARLASGAITF EQVGPELPPK VVEIPYQKAK ATKGEVKGNI PILDIQYGNV WSNISDKLLN QAKIKLNDTL CVTIFKGSKK QYEGKMPYVA SFGDVPEGQP LVYLNSLLNV SVALNRDNFA QKYQIKSGAD WNIDIKKCAK // ID O25639_HELPY Unreviewed; 209 AA. AC O25639; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08036.1}; GN OrderedLocusNames=HP_0991 {ECO:0000313|EMBL:AAD08036.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08036.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08036.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08036.1; -; Genomic_DNA. DR PIR; G64643; G64643. DR RefSeq; WP_010875576.1; NC_018939.1. DR ProteinModelPortal; O25639; -. DR STRING; 85962.HP0991; -. DR PaxDb; O25639; -. DR PRIDE; O25639; -. DR EnsemblBacteria; AAD08036; AAD08036; HP_0991. DR PATRIC; 20593307; VBIHelPyl33062_1035. DR OMA; RNKIWEC; -. DR OrthoDB; EOG62K1VB; -. DR BioCyc; HPY:HP0991-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 209 AA; 24586 MW; 445090352CD0734C CRC64; MAFEMKEHSK EFPNKKQLQT MLENAFDNGA ESFIDDWHER FGGISRENTY KALGIKEYSD EGKILAFGER SYIRQYKKDF EESTYDTRQT LSAMANMGGE NDYKITWLKP KYQLHSSNNI KPLMSNTELL NMIELTNIKK EYVMGCNMEI DGSKYPIHKD WGFFGKAKVP ETWRNKIWEC IKNKVKSYDN TTTKIGIVWK KNTYSISHH // ID O25633_HELPY Unreviewed; 274 AA. AC O25633; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08029.1}; GN OrderedLocusNames=HP_0983 {ECO:0000313|EMBL:AAD08029.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08029.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08029.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08029.1; -; Genomic_DNA. DR PIR; G64642; G64642. DR RefSeq; NP_207774.1; NC_000915.1. DR RefSeq; WP_000343415.1; NC_018939.1. DR ProteinModelPortal; O25633; -. DR DIP; DIP-3212N; -. DR IntAct; O25633; 3. DR MINT; MINT-174294; -. DR PaxDb; O25633; -. DR EnsemblBacteria; AAD08029; AAD08029; HP_0983. DR GeneID; 899516; -. DR KEGG; heo:C694_05070; -. DR KEGG; hpy:HP0983; -. DR PATRIC; 20593289; VBIHelPyl33062_1026. DR eggNOG; ENOG4105D64; Bacteria. DR eggNOG; COG0668; LUCA. DR KO; K03442; -. DR OMA; SNNTACR; -. DR OrthoDB; EOG61GG69; -. DR BioCyc; HPY:HP0983-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR011066; MscC_channel_C. DR InterPro; IPR006685; MscS_channel. DR InterPro; IPR011014; MscS_channel_TM-2. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. DR SUPFAM; SSF82689; SSF82689; 1. DR SUPFAM; SSF82861; SSF82861; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 17 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 57 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 116 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 274 AA; 30443 MW; F2A33FF649704D8E CRC64; MDEIKTLLVD FFPQAKHFGI ILIKAIVVFC IGFYFSFFLQ KKTMKFLSKK DEILANFVAQ VTFILILIIT TIIALSTLGV QTTSIITVLG TVGIAVALAL KDYLSSIAGG IILIILHPFK KGDIIEISGL EGKVEALNFF NTSLRLHDGR LAVLPNRSVA NSNIINSNNT ACRRIEWVCG VGYGSDIELV HKTIKDVIDA MEKIDKNMPT FIGITDFGQS SLNFTIRVWA KIEDGIFNVR SELIERIKNA LDANHIEIPF NKLDIAIKNQ DSPK // ID O26082_HELPY Unreviewed; 335 AA. AC O26082; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Iron(III) ABC transporter, periplasmic iron-binding protein (CeuE) {ECO:0000313|EMBL:AAD08601.1}; GN OrderedLocusNames=HP_1561 {ECO:0000313|EMBL:AAD08601.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08601.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08601.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains Fe/B12 periplasmic-binding domain. CC {ECO:0000256|SAAS:SAAS00514624}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08601.1; -; Genomic_DNA. DR PIR; A64715; A64715. DR RefSeq; NP_208352.1; NC_000915.1. DR RefSeq; WP_000961734.1; NC_018939.1. DR ProteinModelPortal; O26082; -. DR DIP; DIP-3443N; -. DR IntAct; O26082; 2. DR MINT; MINT-164053; -. DR STRING; 85962.HP1561; -. DR PaxDb; O26082; -. DR EnsemblBacteria; AAD08601; AAD08601; HP_1561. DR GeneID; 899730; -. DR KEGG; heo:C694_08090; -. DR KEGG; hpy:HP1561; -. DR PATRIC; 20594549; VBIHelPyl33062_1642. DR eggNOG; ENOG4107S5J; Bacteria. DR eggNOG; COG0614; LUCA. DR KO; K02016; -. DR OMA; YIGSYVE; -. DR OrthoDB; EOG6B626R; -. DR BioCyc; HPY:HP1561-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002491; ABC_transptr_periplasmic_BD. DR Pfam; PF01497; Peripla_BP_2; 1. DR PROSITE; PS50983; FE_B12_PBP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 31 {ECO:0000256|SAM:SignalP}. FT CHAIN 32 335 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158606. FT DOMAIN 50 309 Fe/B12 periplasmic-binding. FT {ECO:0000259|PROSITE:PS50983}. SQ SEQUENCE 335 AA; 37552 MW; 78ABAFFB010534EF CRC64; MLVTRFKKAF ISYSLGVLVA SLWLNVCNAS AQEVKVKDYF GEQTIKLPVS KIAYIGSYVE VPAMLNVWNR VVGVSDYAFK DDIVKATLKG EDLKRVKHMS TDHTAALNVE LLKKLSPDLV VTFVGNPKAV EHAKKFGISF LSFQETTIAE AMQAMQAQAT VLEIDASKKF AKMQETLDFI AERLKNVKKK KGVELFHKAN KISGHQAISS DILEKGGIDN FGLKYVKFGR ADISVEKIVK ENPEIIFIWW ISPLTPEDVL NNPKFATIKA IKNKQVYKLP TMDIGGPRAP LISLFIALKA HPEAFKGVDI NAMVKDYYKV VFDLNDAEVE PFLWH // ID O24884_HELPY Unreviewed; 470 AA. AC O24884; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Mannose-6-phosphate isomerase (Pmi) or (AlgA) {ECO:0000313|EMBL:AAD07111.1}; GN OrderedLocusNames=HP_0043 {ECO:0000313|EMBL:AAD07111.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07111.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07111.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2QH5} RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 2-298. RA Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Iizuka M., RA Dickey M., Maletic M., Wasserman S.R., Koss J., Burley S.K., RA Almo S.C.; RT "Crystal structure of Mannose-6-phosphate isomerase from Helicobacter RT pylori."; RL Submitted (JUN-2007) to the PDB data bank. CC -!- SIMILARITY: Belongs to the mannose-6-phosphate isomerase type 2 CC family. {ECO:0000256|RuleBase:RU004190}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07111.1; -; Genomic_DNA. DR PIR; C64525; C64525. DR RefSeq; NP_206844.1; NC_000915.1. DR RefSeq; WP_000694809.1; NC_018939.1. DR PDB; 2QH5; X-ray; 2.30 A; A/B=2-298. DR PDBsum; 2QH5; -. DR ProteinModelPortal; O24884; -. DR SMR; O24884; 1-266. DR DIP; DIP-3748N; -. DR IntAct; O24884; 1. DR MINT; MINT-164598; -. DR STRING; 85962.HP0043; -. DR PaxDb; O24884; -. DR EnsemblBacteria; AAD07111; AAD07111; HP_0043. DR GeneID; 899159; -. DR KEGG; heo:C694_00195; -. DR KEGG; hpy:HP0043; -. DR PATRIC; 20591285; VBIHelPyl33062_0044. DR eggNOG; ENOG4105CJT; Bacteria. DR eggNOG; COG0662; LUCA. DR eggNOG; COG0836; LUCA. DR KO; K00971; -. DR OMA; VCTAARY; -. DR OrthoDB; EOG6X3W6T; -. DR BioCyc; HPY:HP0043-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR GO; GO:0000271; P:polysaccharide biosynthetic process; IEA:InterPro. DR Gene3D; 2.60.120.10; -; 1. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR006375; Man1P_GuaTrfase/Man6P_Isoase. DR InterPro; IPR001538; Man6P_isomerase-2_C. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF01050; MannoseP_isomer; 1. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF51182; SSF51182; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR01479; GMP_PMI; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2QH5}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Isomerase {ECO:0000313|EMBL:AAD07111.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 280 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. FT DOMAIN 311 461 MannoseP_isomer. FT {ECO:0000259|Pfam:PF01050}. FT COILED 326 353 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 470 AA; 53371 MW; 7D9F3FC322B757C6 CRC64; MKIKNILLSG GSGKRLWPLS RSLYPKQFLK LFDHKSLFEL SFKRNASLVD ETLIVCNEKH YFLALEEIKN EIKNKSVGFL LESLSKNTAN AIALSALMSD KEDLLIVTPS DHLIKDLQAY ENAIKKAIDL AQKGFLVTFG VSIDKPNTEF GYIESPNGLD VKRFIEKPSL DKAIEFQKSG GFYFNSGMFV FQAGVFLDEL KKHAPTILKG CERAFESLEN AYFFEKKIAR LSEKSMQDLE DMSIDIALMQ QSHKIKMVEL NAKWSDLGNF NALFEEAANE PKENVSLNQT PVFAKESENN LVFSHKVSAL LGVENLAVID TKDALLIAHK DKAKDLKALV NEVETNNQEL LQTHTKVYRP WGSYEVLHES GCYKVKILEV KPNARLSLQK HFHRSEHWVV ISGMASVELD HQLFELQANE STYIPKNTLH RLANYGKIPL IIIEVQVGEY VGEDDIVRID DDFNRQNQNA // ID O25559_HELPY Unreviewed; 77 AA. AC O25559; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Hydrogenase expression/formation protein (HypC) {ECO:0000313|EMBL:AAD07945.1}; GN OrderedLocusNames=HP_0899 {ECO:0000313|EMBL:AAD07945.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07945.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07945.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07945.1; -; Genomic_DNA. DR PIR; C64632; C64632. DR RefSeq; NP_207692.1; NC_000915.1. DR RefSeq; WP_000335443.1; NC_018939.1. DR ProteinModelPortal; O25559; -. DR SMR; O25559; 1-74. DR STRING; 85962.HP0899; -. DR PaxDb; O25559; -. DR EnsemblBacteria; AAD07945; AAD07945; HP_0899. DR GeneID; 899429; -. DR KEGG; heo:C694_04615; -. DR KEGG; hpy:HP0899; -. DR PATRIC; 20593091; VBIHelPyl33062_0931. DR eggNOG; ENOG4105WRB; Bacteria. DR eggNOG; COG0298; LUCA. DR KO; K04653; -. DR OMA; VDNERQS; -. DR OrthoDB; EOG6GR3F3; -. DR BioCyc; HPY:HP0899-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR019812; Hydgase_assmbl_chp_CS. DR InterPro; IPR001109; Hydrogenase_HupF/HypC. DR Pfam; PF01455; HupF_HypC; 1. DR PRINTS; PR00445; HUPFHYPC. DR TIGRFAMs; TIGR00074; hypC_hupF; 1. DR PROSITE; PS01097; HUPF_HYPC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 77 AA; 8627 MW; A3D13E2FA3B472F3 CRC64; MCLAIPSKVI AIKDNVVLLE TLGVQREASL DLMGESVKVG DYVLLHIGYV MSKIDEKEAL ESIELYQEMI ARMNETQ // ID O26041_HELPY Unreviewed; 108 AA. AC O26041; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08557.1}; GN OrderedLocusNames=HP_1511 {ECO:0000313|EMBL:AAD08557.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08557.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08557.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08557.1; -; Genomic_DNA. DR PIR; G64708; G64708. DR RefSeq; NP_208302.1; NC_000915.1. DR RefSeq; WP_000643733.1; NC_018939.1. DR ProteinModelPortal; O26041; -. DR STRING; 85962.HP1511; -. DR PaxDb; O26041; -. DR EnsemblBacteria; AAD08557; AAD08557; HP_1511. DR GeneID; 899780; -. DR KEGG; heo:C694_07825; -. DR KEGG; hpy:HP1511; -. DR PATRIC; 20594437; VBIHelPyl33062_1587. DR eggNOG; COG1629; LUCA. DR OMA; KHAYRPF; -. DR OrthoDB; EOG6HF623; -. DR BioCyc; HPY:HP1511-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 108 AA; 12441 MW; F6BA4FF4D4A6727D CRC64; MKAIFSLFFL LIVLKANPIN PLLEPLYFPS YAQFLNLAPH FVIKKKRAYR PFQWGNTIII KRHDLEERQS NQPSDIFRQN AEINVSSQTF LKGMSNASSR TVLDSAAQ // ID O25645_HELPY Unreviewed; 61 AA. AC O25645; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08047.1}; GN OrderedLocusNames=HP_0999 {ECO:0000313|EMBL:AAD08047.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08047.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08047.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08047.1; -; Genomic_DNA. DR PIR; G64644; G64644. DR RefSeq; WP_010875579.1; NC_018939.1. DR ProteinModelPortal; O25645; -. DR STRING; 85962.HP0999; -. DR PaxDb; O25645; -. DR PRIDE; O25645; -. DR EnsemblBacteria; AAD08047; AAD08047; HP_0999. DR PATRIC; 20593323; VBIHelPyl33062_1043. DR OMA; NQEAYSP; -. DR OrthoDB; EOG6MSS8B; -. DR BioCyc; HPY:HP0999-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 61 AA; 7184 MW; 14535C61D1B89266 CRC64; MSKDRDYKPV FNPKSKEVLE KMNAEKRASL VDEREEVKEQ ANQEAYRPMK KAANDDYDMG M // ID O24983_HELPY Unreviewed; 224 AA. AC O24983; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07253.1}; GN OrderedLocusNames=HP_0181 {ECO:0000313|EMBL:AAD07253.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07253.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07253.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07253.1; -; Genomic_DNA. DR PIR; E64542; E64542. DR RefSeq; NP_206980.1; NC_000915.1. DR RefSeq; WP_010875450.1; NC_000915.1. DR ProteinModelPortal; O24983; -. DR DIP; DIP-3262N; -. DR IntAct; O24983; 1. DR MINT; MINT-178581; -. DR STRING; 85962.HP0181; -. DR PaxDb; O24983; -. DR PRIDE; O24983; -. DR EnsemblBacteria; AAD07253; AAD07253; HP_0181. DR GeneID; 898993; -. DR KEGG; hpy:HP0181; -. DR PATRIC; 20591585; VBIHelPyl33062_0192. DR eggNOG; COG1286; LUCA. DR KO; K03558; -. DR OMA; RGFYHGF; -. DR OrthoDB; EOG6W4609; -. DR BioCyc; HPY:HP0181-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0009403; P:toxin biosynthetic process; IEA:InterPro. DR InterPro; IPR003825; Colicin-V_CvpA. DR Pfam; PF02674; Colicin_V; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 115 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 148 175 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 224 AA; 24909 MW; B27185B3874D42F7 CRC64; MVVVAFGIRG FYHGFVSEVA GTLGIVLGVY LASRYSVAVG NLFSEHLYDL RNETMTNLIG FLLVLASIWV FFLAFGVLLG KVLVFSGLGI IDKALGFIFS CLKTFLVLSF ILYALSKMEV MKDANAYLQE KSAFFSTMKS VASKIMRLDG VKHVEQNLKD NLEEMSDEVK NKESFNKNKE SFNKAMDKGV ESLKEKAKDL PKNMLDPKAN QTPPNPTPSN KEPL // ID O24889_HELPY Unreviewed; 769 AA. AC O24889; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 100. DE SubName: Full=Transcriptional regulator (HypF) {ECO:0000313|EMBL:AAD07115.1}; GN OrderedLocusNames=HP_0048 {ECO:0000313|EMBL:AAD07115.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07115.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07115.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains YrdC-like domain. CC {ECO:0000256|SAAS:SAAS00501982}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07115.1; -; Genomic_DNA. DR PIR; H64525; H64525. DR RefSeq; NP_206849.1; NC_000915.1. DR RefSeq; WP_001164180.1; NC_000915.1. DR ProteinModelPortal; O24889; -. DR IntAct; O24889; 3. DR MINT; MINT-187587; -. DR STRING; 85962.HP0048; -. DR PaxDb; O24889; -. DR PRIDE; O24889; -. DR EnsemblBacteria; AAD07115; AAD07115; HP_0048. DR GeneID; 899169; -. DR KEGG; hpy:HP0048; -. DR PATRIC; 20591295; VBIHelPyl33062_0049. DR eggNOG; ENOG4105C8H; Bacteria. DR eggNOG; COG0068; LUCA. DR KO; K04656; -. DR OMA; YVMTSAN; -. DR OrthoDB; EOG6ND0QX; -. DR BioCyc; HPY:HP0048-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0003725; F:double-stranded RNA binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0046944; P:protein carbamoylation; IEA:InterPro. DR Gene3D; 3.90.870.10; -; 1. DR InterPro; IPR001792; Acylphosphatase-like_dom. DR InterPro; IPR017968; Acylphosphatase_CS. DR InterPro; IPR004421; Carbamoyltransferase_HypF. DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom. DR InterPro; IPR006070; YrdC-like_dom. DR InterPro; IPR011125; Znf_HypF. DR Pfam; PF00708; Acylphosphatase; 1. DR Pfam; PF01300; Sua5_yciO_yrdC; 1. DR Pfam; PF07503; zf-HYPF; 2. DR PIRSF; PIRSF006256; CMPcnvr_hdrg_mat; 1. DR SUPFAM; SSF54975; SSF54975; 1. DR SUPFAM; SSF55821; SSF55821; 1. DR TIGRFAMs; TIGR00143; hypF; 1. DR PROSITE; PS00150; ACYLPHOSPHATASE_1; 1. DR PROSITE; PS51160; ACYLPHOSPHATASE_3; 1. DR PROSITE; PS51163; YRDC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 20 105 Acylphosphatase-like. FT {ECO:0000259|PROSITE:PS51160}. FT DOMAIN 211 395 YrdC-like. {ECO:0000259|PROSITE:PS51163}. SQ SEQUENCE 769 AA; 87039 MW; 4D05A7255C297D71 CRC64; MQHLNQTAWK FALCNDATLL NKITLFGVVQ GVGMRPFIYT LAQKLELVGF VRNTQAALEI ILPAHKTESF LNALKKGLPP LALVEKIIIS PYDKALHFNG FRILESKNHP LNLLSQIPKD LGVCKDCLRE IRDKNSPYFH YAFNSCAKCG ARYSLLNALP YDRENSALKP FKLCDFCASI YQDPTNKRFH IQGISCKKCG IALNYKRFKN DDALLECAKD IQKGKIIALK GLGGFALLCD GRNFQTIERL RLLKNRPLKP FALMFKDLNT AKQHAFLNAL ECESLISTSA PILLARKKPD IKLAPNIAKN SPFYGVILPY TPLHALLLDL LDFPIVFTSA NFSSLPLASD EAEIDALSFI FDFKLTHNRA IIHRIDDSIV QHVDNAIRPM RLARGFAPLY LTLPKRSNGS PKKILALGAQ QKGHFSLLDS GTSILLLSPF CGDLSVLENE KHFKETLNFF LKTYDFKPTI LACDKHQNYT TTQMAFDFNT PLLQVQHHHA HFLASVLDAL LQDPHLNHPF IGIVWDGSGA YENKIYGAEC FVGDLERIEE TARFEEFWLL GGQKAIKEPR RLVLEIALKH QLNKLLKRVQ KHFKEDELEI FQQMHDKKIQ SIATNSIGRL FDIVAFSLDL TGTISFEAES GQVLENLALQ SDEIAFYPFE IKNSVVCLKE FYQAFEKDLG VLEPERIAKK FFNSLVEIIT ALIVPFKEHV VVCSGGVFCN QLLCEQLAKR LRGLKRQYFF HKHFPPNDSS IPIGQALMAY FNPTIIKKG // ID O25771_HELPY Unreviewed; 696 AA. AC O25771; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp25) {ECO:0000313|EMBL:AAD08204.1}; GN OrderedLocusNames=HP_1156 {ECO:0000313|EMBL:AAD08204.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08204.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08204.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08204.1; -; Genomic_DNA. DR PIR; D64664; D64664. DR RefSeq; NP_207947.1; NC_000915.1. DR RefSeq; WP_001179119.1; NC_018939.1. DR ProteinModelPortal; O25771; -. DR DIP; DIP-3128N; -. DR IntAct; O25771; 2. DR MINT; MINT-184031; -. DR STRING; 85962.HP1156; -. DR PaxDb; O25771; -. DR EnsemblBacteria; AAD08204; AAD08204; HP_1156. DR GeneID; 899916; -. DR KEGG; heo:C694_05970; -. DR KEGG; hpy:HP1156; -. DR PATRIC; 20593663; VBIHelPyl33062_1210. DR OMA; YYLEAMG; -. DR OrthoDB; EOG6NPM3P; -. DR BioCyc; HPY:HP1156-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 26 {ECO:0000256|SAM:SignalP}. FT CHAIN 27 696 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157763. SQ SEQUENCE 696 AA; 76346 MW; 78CBCB866CB0A7D4 CRC64; MQNFVFSKKW LICSSLLPLF FLNPLAAEDD GFFMGVSYQT SLAIQRVDNS GLNASQAAST YIRQNAIALE SAAVPLAYYL EAMGQQTRVL MQMLCPDPSK RCLLYAGGYK NGSSNTNGDT GNNPPRGNVN ATFDMQSLVN NLNKLTQLIG ETLIRNPENL SNAKVFNVKF GNQSTVIALP EGLANTMNAL NDDITNALTT LWYNQTLTNK SFNSGNSVNF SPQVLQHLLQ DGLATSNQTI CSTQNQCTAT NEAKSIAQNA QNIFQALMQA GILGGLANEK QFGFTYNKAP NGSDSQQGYQ SFSGPGYYTK NGANGTTQAP LKALPAGATI GSGNGQYTYH PSSAVYYLAD SIIANGITAS MIFSGMQNFA NKAAKLTGTS SYSQMQDAIN YGESLLSNTV AYGDFITNWV APYLDLNNKG LNFLPSYGGQ LNGANHQTPQ LTPQQAQQEQ KVIMNQLEQA TNAPTPAQIN RILANPYSPT AKTLMAYGLY RSKAVIGGVI DEMQTKVNQV YQMGFARNFL EHNSNSNNMN GFGVKMGYKQ FFGKKRMFGL RYYGFYDFGY AQFGAESSLV KATLSSYGAG TDFLYNVFTR KRGTEAIDIG FFAGIQLAGQ TWKTNFLDQV DGNHLKPKDT SFQFLFDLGI RTNFSKIAHQ KRSRFSQGIE FGLKIPVLYH TYYQSEGVTA KYRRAFSFYV GYNIGF // ID O25451_HELPY Unreviewed; 48 AA. AC O25451; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07816.1}; GN OrderedLocusNames=HP_0756 {ECO:0000313|EMBL:AAD07816.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07816.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07816.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07816.1; -; Genomic_DNA. DR PIR; D64614; D64614. DR RefSeq; NP_207549.1; NC_000915.1. DR RefSeq; WP_000656201.1; NC_018939.1. DR ProteinModelPortal; O25451; -. DR STRING; 85962.HP0756; -. DR PaxDb; O25451; -. DR EnsemblBacteria; AAD07816; AAD07816; HP_0756. DR GeneID; 899334; -. DR KEGG; heo:C694_03890; -. DR KEGG; hpy:HP0756; -. DR PATRIC; 20592801; VBIHelPyl33062_0789. DR BioCyc; HPY:HP0756-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 48 AA; 6058 MW; 7FC7C3710F493313 CRC64; MKDYEDELED FEEEELEGFE EEDEEYGDYK NVYDDDDYED YNSDYEEE // ID O25661_HELPY Unreviewed; 519 AA. AC O25661; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 96. DE SubName: Full=Amino acid permease (RocE) {ECO:0000313|EMBL:AAD08062.1}; GN OrderedLocusNames=HP_1017 {ECO:0000313|EMBL:AAD08062.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08062.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08062.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08062.1; -; Genomic_DNA. DR PIR; A64647; A64647. DR RefSeq; NP_207807.1; NC_000915.1. DR RefSeq; WP_000924663.1; NC_000915.1. DR ProteinModelPortal; O25661; -. DR DIP; DIP-3084N; -. DR IntAct; O25661; 1. DR MINT; MINT-178782; -. DR STRING; 85962.HP1017; -. DR PaxDb; O25661; -. DR PRIDE; O25661; -. DR EnsemblBacteria; AAD08062; AAD08062; HP_1017. DR GeneID; 899552; -. DR KEGG; hpy:HP1017; -. DR PATRIC; 20593369; VBIHelPyl33062_1065. DR eggNOG; ENOG4108IQI; Bacteria. DR eggNOG; COG0833; LUCA. DR KO; K03293; -. DR OMA; FLAVWST; -. DR OrthoDB; EOG6HQSQM; -. DR BioCyc; HPY:HP1017-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015171; F:amino acid transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR004841; AA-permease/SLC12A_dom. DR InterPro; IPR002293; AA/rel_permease1. DR InterPro; IPR004840; Amoino_acid_permease_CS. DR PANTHER; PTHR11785; PTHR11785; 1. DR Pfam; PF00324; AA_permease; 1. DR PIRSF; PIRSF006060; AA_transporter; 1. DR PROSITE; PS00218; AMINO_ACID_PERMEASE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 36 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 90 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 96 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 141 162 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 174 193 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 205 227 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 251 274 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 295 312 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 344 369 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 390 410 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 422 441 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 461 482 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 488 506 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 65 509 AA_permease. {ECO:0000259|Pfam:PF00324}. SQ SEQUENCE 519 AA; 57877 MW; EB9420767B5DECC0 CRC64; MLLIVFFKFY FQYSIKKKSF YFIFVIIQAI FIFNLRRCRM DNQKITHQNI TQKQGELKRD MKMRHLLMIA FGGAIGTGLF VGTGGNIASA GPLGTLIAYC FGGLVVYCIM LSLGELASVY PTTGSFGDYA AKFIGPGTGY MVFWMYWLGW VITVALEYIA IGMLMQRWFA DIPIHYWVIL CIALVFLLNF FSVKIFAEGE FFFSLIKVLA VIAFIGIGAI GIIYQIYSHG FGSIFDNFHF GDKGFFPNGS AAVFSAMLAV IFAFTGTEVI GVAVGETKNA SEVMPKAIKA TLWRIVFFFL GSVFVISVFL PMNDSSITQS PFVSVLERIN LPFIGMGIPY VADIMNAVII TAMFSTANSG LYGASRMIYG LSKQKMFFKV FSQLNRQGTP TYAMFFSLSF SLIGLLVQIY AKENVVEALI NVISFTVIIV WVSVSVSQYS FRKQYLKAGH SLEDLPYKAP FLPFLQLIGI TGCAIGVIGS AMDKDQRIGM ILTIVFAVIC YIGYYFTQKA NENNKKDLI // ID O24860_HELPY Unreviewed; 93 AA. AC O24860; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07091.1}; GN OrderedLocusNames=HP_0015 {ECO:0000313|EMBL:AAD07091.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07091.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07091.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07091.1; -; Genomic_DNA. DR PIR; G64521; G64521. DR RefSeq; NP_206817.1; NC_000915.1. DR RefSeq; WP_001272690.1; NC_018939.1. DR ProteinModelPortal; O24860; -. DR STRING; 85962.HP0015; -. DR PaxDb; O24860; -. DR EnsemblBacteria; AAD07091; AAD07091; HP_0015. DR GeneID; 899094; -. DR KEGG; heo:C694_00070; -. DR KEGG; hpy:HP0015; -. DR PATRIC; 20591223; VBIHelPyl33062_0013. DR OMA; IFLIGMC; -. DR OrthoDB; EOG6K4045; -. DR BioCyc; HPY:HP0015-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR007039; TrbC/VirB2. DR Pfam; PF04956; TrbC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 65 90 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 10526 MW; 5E13E652C402A22F CRC64; MSAHFLKIVF LVGMCVSSLF AEGLEGFFNA LEAQLKSPIA KGILMVIFIG IAIYVWRNLD RWKEILFTIL GVVFGIFLFF KAPSLANWFM GIF // ID O25668_HELPY Unreviewed; 288 AA. AC O25668; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 101. DE SubName: Full=Co-chaperone-curved DNA binding protein A (CbpA) {ECO:0000313|EMBL:AAD08066.1}; GN OrderedLocusNames=HP_1024 {ECO:0000313|EMBL:AAD08066.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08066.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08066.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25669:HP_1025; NbExp=2; IntAct=EBI-6415948, EBI-6415953; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08066.1; -; Genomic_DNA. DR PIR; H64647; H64647. DR RefSeq; NP_207814.1; NC_000915.1. DR RefSeq; WP_000045822.1; NC_018939.1. DR ProteinModelPortal; O25668; -. DR DIP; DIP-3508N; -. DR IntAct; O25668; 9. DR MINT; MINT-170669; -. DR STRING; 85962.HP1024; -. DR PaxDb; O25668; -. DR EnsemblBacteria; AAD08066; AAD08066; HP_1024. DR GeneID; 899559; -. DR KEGG; heo:C694_05300; -. DR KEGG; hpy:HP1024; -. DR PATRIC; 20593385; VBIHelPyl33062_1073. DR eggNOG; ENOG4105DVC; Bacteria. DR eggNOG; COG2214; LUCA. DR KO; K05516; -. DR OMA; QKFRIKE; -. DR OrthoDB; EOG6BPDKP; -. DR BioCyc; HPY:HP1024-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 1.10.287.110; -; 1. DR InterPro; IPR002939; DnaJ_C. DR InterPro; IPR001623; DnaJ_domain. DR InterPro; IPR018253; DnaJ_domain_CS. DR InterPro; IPR008971; HSP40/DnaJ_pept-bd. DR Pfam; PF00226; DnaJ; 1. DR Pfam; PF01556; DnaJ_C; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR SUPFAM; SSF49493; SSF49493; 2. DR PROSITE; PS00636; DNAJ_1; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 68 J. {ECO:0000259|PROSITE:PS50076}. SQ SEQUENCE 288 AA; 32908 MW; 9143884C0768FFEE CRC64; MSKSLYQTLN VSENASQDEI KKSYRRLARQ YHPDLNKTKE AEEKFKEINA AYEILSDEEK RRQYDQFGDN MFGGQNFSDF ARSRGPSEDL DDILSSIFGK GGFSQRFSQN SQGFSGFNFS NFAPENLDIT AALNVSVLDT LLGNKKQVSI NNETFSLKIP IGVEEGEKIR VRNKGKTGRT TRGDLLLEIH IEEDEMYRRE KDDITQIFDL PLKTALFGGK IEIATWHKTL TLTIPPNTKA MQKFRIKEKG IKNRKTSHVG DLYLQARLIL PKTETLSNEL KALLEKEL // ID O25907_HELPY Unreviewed; 359 AA. AC O25907; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_1352 {ECO:0000313|EMBL:AAD08395.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08395.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08395.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08395.1; -; Genomic_DNA. DR PIR; H64688; H64688. DR RefSeq; NP_208144.1; NC_000915.1. DR RefSeq; WP_000346779.1; NC_018939.1. DR ProteinModelPortal; O25907; -. DR STRING; 85962.HP1352; -. DR REBASE; 56831; M.Hpy26695ORF6975P. DR PaxDb; O25907; -. DR EnsemblBacteria; AAD08395; AAD08395; HP_1352. DR GeneID; 900350; -. DR KEGG; heo:C694_06975; -. DR KEGG; hpy:HP1352; -. DR PATRIC; 20594089; VBIHelPyl33062_1415. DR eggNOG; ENOG4107WUI; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00571; -. DR OMA; APFMTAR; -. DR OrthoDB; EOG6FV84T; -. DR BioCyc; HPY:HP1352-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD08395.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08395.1}. FT DOMAIN 28 249 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 359 AA; 41887 MW; 88A9C4D7CD82973D CRC64; MDFLKENLNT IIEGDCLEKL KDFPNRSVDF IFADPPYFMQ TEGELKRFEG TKFQGVEDYW DKFGSFKEYD AFCLGWLKEC QRILKDNGSI CVIGSFQNIF RIGFHLQNLG FWILNDIIWH KSNPVPNFAG KRLCNAHETL IWCAKHKNSK VAFNYKTMKY LNNDKQEKSV WQIPICMGNE RLKDAQGKKV HSTQKPEALL KKIILSATKP KDIILDPFFG TGTTGAVAKS MNRYFIGIEK DSFYIKEAAK RLNNTRDKSD FITNLDLETK PPKIPMSLLI SKQLLKIGDF LYSPNKEKIC QVLENGQVRD NENYETSIHK MSAKYLNKTN HNGWKFFYAY YQNQFLLLDE LRYICQKDS // ID O25258_HELPY Unreviewed; 481 AA. AC O25258; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Cag pathogenicity island protein (Cag3) {ECO:0000313|EMBL:AAD07589.1}; GN OrderedLocusNames=HP_0522 {ECO:0000313|EMBL:AAD07589.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07589.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07589.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC P97245:cagT; NbExp=3; IntAct=EBI-2506871, EBI-2585196; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07589.1; -; Genomic_DNA. DR PIR; B64585; B64585. DR RefSeq; NP_207318.1; NC_000915.1. DR RefSeq; WP_000488766.1; NC_018939.1. DR ProteinModelPortal; O25258; -. DR DIP; DIP-3529N; -. DR IntAct; O25258; 17. DR MINT; MINT-165300; -. DR STRING; 85962.HP0522; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25258; -. DR EnsemblBacteria; AAD07589; AAD07589; HP_0522. DR GeneID; 899037; -. DR KEGG; heo:C694_02690; -. DR KEGG; hpy:HP0522; -. DR PATRIC; 20592319; VBIHelPyl33062_0548. DR KO; K12088; -. DR OMA; YANDVIC; -. DR OrthoDB; EOG64V28W; -. DR BioCyc; HPY:HP0522-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 481 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157801. FT COILED 31 58 {ECO:0000256|SAM:Coils}. FT COILED 290 342 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 481 AA; 55080 MW; 156C4CA8E03D100D CRC64; MFRKLATAVS LIGLLTSNTL YAKEISEADK VIKATKETKE TKKEAKRLKK EAKQRQQIPD HKKPQYVSVD DTKTQALFDI YDTLNVNDKS FGDWFGNSAL KDKTYLYAMD LLDYNNYLSI ENPIIKTRAM GTYADLIIIT GSLEQVNGYY NILKALNKRN AKFVLKINEN MPYAQATFLR VPKRSDPNAH TLDKGASIDE NKLFEQQKKM YFNYANDVIC RPDDEVCSPL RDEMVAMPTS DSVTQKPNII APYSLYRLKE TNNANEAQPS PYATQTAPEN SKEKLIEELI ANSQLVANEE EREKKLLAEK EKQEAELAKY KLKDLENQKK LKALEAELKK KNAKKPRVVE VPVSPQTSNS DETMRVVKEK ENYNGLLVDK ETTIKRSYEG TLISENSYSK KTPLNPNDLR SLEEEIKSYY IKSNGLCYTN GINLYVKIKN DPYKEGMLCG YESVQNLLSP LKDKLKYDKQ KLQKALLKDS K // ID O24985_HELPY Unreviewed; 267 AA. AC O24985; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07255.1}; GN OrderedLocusNames=HP_0185 {ECO:0000313|EMBL:AAD07255.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07255.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07255.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07255.1; -; Genomic_DNA. DR PIR; A64543; A64543. DR RefSeq; NP_206984.1; NC_000915.1. DR RefSeq; WP_001290538.1; NC_018939.1. DR ProteinModelPortal; O24985; -. DR STRING; 85962.HP0185; -. DR PaxDb; O24985; -. DR EnsemblBacteria; AAD07255; AAD07255; HP_0185. DR GeneID; 898982; -. DR KEGG; heo:C694_00920; -. DR KEGG; hpy:HP0185; -. DR PATRIC; 20591593; VBIHelPyl33062_0196. DR OMA; RYLIGPY; -. DR OrthoDB; EOG6XDGVF; -. DR BioCyc; HPY:HP0185-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 43 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 267 AA; 30350 MW; CA6DAB3F335922B8 CRC64; MSEKERLNEV ILEEENNGSG TKKVFLIVAI AIIILAVLLM VFWKSTRVAP KETFLQTDSG MQKIGNTKDE KKDDEFESLN LDPSKQEDKL DKVADNVKKQ ENDAFNMPTQ TDQTQTEMKT TEETQEAQKG LKVVEHTSTQ KESQAVAKKE ISHKKPKATP KDKEAHKDKD KHAVKELKVK KEAHKEVPKK ANSKTTLTKG HYLQVGVFAH TPNKAFLQAF NQFPHKIEDR GSTKRYLIGP YKNKQEALMH ADEVSKKMTK PVVIEAR // ID O25942_HELPY Unreviewed; 435 AA. AC O25942; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Fibronectin/fibrinogen-binding protein {ECO:0000313|EMBL:AAD08432.1}; GN OrderedLocusNames=HP_1392 {ECO:0000313|EMBL:AAD08432.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08432.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08432.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08432.1; -; Genomic_DNA. DR PIR; H64693; H64693. DR RefSeq; NP_208183.1; NC_000915.1. DR RefSeq; WP_000667832.1; NC_018939.1. DR ProteinModelPortal; O25942; -. DR DIP; DIP-3118N; -. DR IntAct; O25942; 1. DR MINT; MINT-183366; -. DR STRING; 85962.HP1392; -. DR PaxDb; O25942; -. DR EnsemblBacteria; AAD08432; AAD08432; HP_1392. DR GeneID; 899904; -. DR KEGG; heo:C694_07190; -. DR KEGG; hpy:HP1392; -. DR PATRIC; 20594171; VBIHelPyl33062_1456. DR eggNOG; ENOG4107VQK; Bacteria. DR eggNOG; COG1293; LUCA. DR OMA; ARANDLW; -. DR OrthoDB; EOG61GG68; -. DR BioCyc; HPY:HP1392-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008532; DUF814. DR Pfam; PF05670; DUF814; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 334 415 DUF814. {ECO:0000259|Pfam:PF05670}. FT COILED 178 209 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 435 AA; 51096 MW; FCD0E9977A6E71C2 CRC64; MKFFLLKKFS EFLNAQTHFS LKRLNASSFL LETFSKEKHA FVVDLSAPYI GLSKKPPESV LKNTLALDFC LNKFTRNAKI LQANIIDNDR ILEINGAKDL AYKSENFILR LEMIPKKANL MILDKEKCVI EAFRFNDRVA KNDILGALPP NIYEHQEEDL DFKGLLDILE KDFLFYQHKE LEHKKNQIIK RLNAQKERLK EKLEKLEDPK NLQLEAKELQ TQASLLLTYQ HLIHKHESRV VLKDFEDKER AIEIDKSMPL NAFINKKFTL SKKKKQKSQF LYLEEENLKE KIAFKENQIN YVKGAQEESV LEMFMPSKNS KIKRPMSGYE VLYYKDFKIG LGKNQKENIK LLQDARANDL WMHVRNIPGS HLIVFCQKNA PKDDVIMELA KMLIKMQKDA FNSYEIDYTQ RKFVKIIKGA NVIYSKYRTI SLKDT // ID O25647_HELPY Unreviewed; 94 AA. AC O25647; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08048.1}; GN OrderedLocusNames=HP_1001 {ECO:0000313|EMBL:AAD08048.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08048.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08048.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08048.1; -; Genomic_DNA. DR PIR; A64645; A64645. DR RefSeq; NP_207792.1; NC_000915.1. DR RefSeq; WP_000394638.1; NC_018939.1. DR ProteinModelPortal; O25647; -. DR IntAct; O25647; 1. DR STRING; 85962.HP1001; -. DR PaxDb; O25647; -. DR EnsemblBacteria; AAD08048; AAD08048; HP_1001. DR GeneID; 899534; -. DR KEGG; heo:C694_05165; -. DR KEGG; hpy:HP1001; -. DR PATRIC; 20593327; VBIHelPyl33062_1045. DR OMA; NANKHEK; -. DR OrthoDB; EOG6PKFGS; -. DR BioCyc; HPY:HP1001-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 94 AA; 11381 MW; 690A6636EAD09899 CRC64; MEFKNTKKDR LSDLENRFEN ANKHETNKHE KEDRKKAHTL YISEKVMNSV EEYLNEFGAF RENKSVFVQD AIIFYLEYKK KEMKQMLLDK ASKL // ID O25217_HELPY Unreviewed; 416 AA. AC O25217; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE SubName: Full=Glutathione-regulated potassium-efflux system protein (KefB) {ECO:0000313|EMBL:AAD07539.1}; GN OrderedLocusNames=HP_0471 {ECO:0000313|EMBL:AAD07539.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07539.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07539.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07539.1; -; Genomic_DNA. DR PIR; G64578; G64578. DR RefSeq; NP_207269.1; NC_000915.1. DR RefSeq; WP_000431914.1; NC_018939.1. DR ProteinModelPortal; O25217; -. DR STRING; 85962.HP0471; -. DR PaxDb; O25217; -. DR EnsemblBacteria; AAD07539; AAD07539; HP_0471. DR GeneID; 899250; -. DR KEGG; heo:C694_02415; -. DR KEGG; hpy:HP0471; -. DR PATRIC; 20592213; VBIHelPyl33062_0495. DR eggNOG; ENOG4105CKD; Bacteria. DR eggNOG; COG0475; LUCA. DR KO; K03455; -. DR OMA; ILNIAQN; -. DR OrthoDB; EOG6XDGX2; -. DR BioCyc; HPY:HP0471-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015299; F:solute:proton antiporter activity; IEA:InterPro. DR InterPro; IPR006153; Cation/H_exchanger. DR Pfam; PF00999; Na_H_Exchanger; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003721}. FT TRANSMEM 6 23 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 47 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 53 72 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 106 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 146 169 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 175 195 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 216 235 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 269 288 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 294 313 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 325 344 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 374 393 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 394 Na_H_Exchanger. FT {ECO:0000259|Pfam:PF00999}. SQ SEQUENCE 416 AA; 46097 MW; B12F6D011B6290F3 CRC64; MENSTLYIVI AGLWLAVGFG IFLKKLDMPV IIGYICTGTV LAAFFKINDF DLLSDIGEFG IVFLMFMIGI EFNFDKLKSI KQEVLVFGLL QVVLCALIAF LLGYFVLGLS PIFSLVLGMG LSLSSTAIVL KFFEDSKQLS TPMGKSAVGI LIFQDIAAIP MLLILTILGS KDSNVNLLIL KTFISAGIIL VLLLLPGKKG ANLILEQAKD TRLPEIFIGT ILVIVCSAAG LSHFFGFSMS LGAFIVGMAI SKSRYKINVQ EEFAQLKNLF LALFFITIGM QINVSFFMEK FFVVIFLLIL VMGFKTAIIY ALLRFFRDAK TAIKTALSLA QIGEFSFVIF LNSGSHQLFN LQEKKGILGF LHQKNILNIA QNDIHQLLIL MVVFSMLATP FILKYLESIA QFILHQKSQE NEPAKK // ID O25358_HELPY Unreviewed; 75 AA. AC O25358; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07716.1}; GN OrderedLocusNames=HP_0641 {ECO:0000313|EMBL:AAD07716.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07716.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07716.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07716.1; -; Genomic_DNA. DR PIR; A64600; A64600. DR RefSeq; NP_207435.1; NC_000915.1. DR RefSeq; WP_010875511.1; NC_018939.1. DR ProteinModelPortal; O25358; -. DR STRING; 85962.HP0641; -. DR PaxDb; O25358; -. DR PRIDE; O25358; -. DR EnsemblBacteria; AAD07716; AAD07716; HP_0641. DR GeneID; 900211; -. DR KEGG; hpy:HP0641; -. DR PATRIC; 20592567; VBIHelPyl33062_0672. DR OrthoDB; EOG6ND0HX; -. DR BioCyc; HPY:HP0641-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 1.10.1040.10; -; 1. DR InterPro; IPR013328; 6PGD_dom_2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 75 AA; 8640 MW; 9AF28FAAC0C83403 CRC64; MITMNAIQWP KKWILGETDN FVSNEVIVKG LDFNKVVQHL PFLFKAQELY SQAEKSGLGE LDMAAVYHYL EKGEH // ID O26045_HELPY Unreviewed; 179 AA. AC O26045; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08558.1}; GN OrderedLocusNames=HP_1516 {ECO:0000313|EMBL:AAD08558.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08558.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08558.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08558.1; -; Genomic_DNA. DR PIR; D64709; D64709. DR RefSeq; NP_208307.1; NC_000915.1. DR RefSeq; WP_000413023.1; NC_018939.1. DR ProteinModelPortal; O26045; -. DR IntAct; O26045; 1. DR STRING; 85962.HP1516; -. DR PaxDb; O26045; -. DR EnsemblBacteria; AAD08558; AAD08558; HP_1516. DR GeneID; 899775; -. DR KEGG; heo:C694_07850; -. DR KEGG; hpy:HP1516; -. DR PATRIC; 20594449; VBIHelPyl33062_1593. DR OMA; DFFEPTK; -. DR OrthoDB; EOG60PHMC; -. DR BioCyc; HPY:HP1516-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 53 80 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 179 AA; 22019 MW; 500F7F1293CD6731 CRC64; MEKLFEKILH EMRSRTSFLL AFVVSLIVFI FNLKGVFQLI FESIFQYTQN KILSFSLSFF FIFFFFYAIF LIFYQIFLWY GAKKYKQNQR DSEIVYNIQK FPNEIKEELY RCYSKKQNKI LRTKKLDDLI DYLDLIGFFK SRDFFEPTKD DYIVKPDVLR AIKKYHKIAF KSVYWQQNK // ID O25060_HELPY Unreviewed; 550 AA. AC O25060; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 114. DE SubName: Full=Cell division protein (FtsH) {ECO:0000313|EMBL:AAD07354.1}; GN OrderedLocusNames=HP_0286 {ECO:0000313|EMBL:AAD07354.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07354.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07354.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the AAA ATPase family. CC {ECO:0000256|RuleBase:RU003651}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07354.1; -; Genomic_DNA. DR PIR; F64555; F64555. DR RefSeq; NP_207084.1; NC_000915.1. DR RefSeq; WP_001116713.1; NC_018939.1. DR ProteinModelPortal; O25060; -. DR SMR; O25060; 159-392. DR IntAct; O25060; 1. DR STRING; 85962.HP0286; -. DR PaxDb; O25060; -. DR EnsemblBacteria; AAD07354; AAD07354; HP_0286. DR GeneID; 900112; -. DR KEGG; heo:C694_01445; -. DR KEGG; hpy:HP0286; -. DR PATRIC; 20591799; VBIHelPyl33062_0297. DR eggNOG; ENOG41081AA; Bacteria. DR eggNOG; COG0465; LUCA. DR OMA; YESGSAF; -. DR OrthoDB; EOG6W71WG; -. DR BioCyc; HPY:HP0286-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00674; AAA; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU003651}; KW Cell cycle {ECO:0000313|EMBL:AAD07354.1}; KW Cell division {ECO:0000313|EMBL:AAD07354.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003651}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 110 129 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 194 330 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 550 AA; 62926 MW; 86519C666D65CE5C CRC64; MPFSKNLENL TAPFKRIKNR SLVLALGFLI LTFCLLLFLI LSDVSRLISG KDFFYVIQSH PKQTLIEDEN YFYANKGLYK TNKEAFLRVY KIPESMPIER RENLSKVSKI FLALLFFISS MLFGIFWRLP KRLDTKMSLE SAHKNELENA FQRYDALGVR FEDIAGVDEV KEELLEVIDY LKNPKKYQDL GIFLPKGVLL IGPPGVGKTM IAKALASEAR VPFFYESGSA FSQIYVGAGA KKVHELFMHA KRHAPSIIFI DEIDALGKAR GGHRSDEREA TLNQLLTEMD GFLQNDEVVV IGATNQMEVM DEALLRSKRF DRRIFISLPD LLERQSILEK LLENKKHALN YLKIAKICVG FSGAMLATLI NESALNALKH QRTEIAESDI LEVKDKIAYG KKKPQTLDEN QKELVALYQS AKALSAYWLE IEFDKAPILG EFIAFNENKI HSESEIKNYI KVYLSGTIIL ELLYKERYSL SKQDLQKAKF LNEFMASELL LAPTKESLSV LYEEQLEFLK PQIAACKRLS VLLLEQEYLE HSNLYDLLNG // ID O25385_HELPY Unreviewed; 228 AA. AC O25385; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 64. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07740.1}; GN OrderedLocusNames=HP_0674 {ECO:0000313|EMBL:AAD07740.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07740.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07740.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07740.1; -; Genomic_DNA. DR PIR; B64604; B64604. DR ProteinModelPortal; O25385; -. DR DIP; DIP-3474N; -. DR IntAct; O25385; 5. DR MINT; MINT-178240; -. DR STRING; 85962.HP0674; -. DR PaxDb; O25385; -. DR PRIDE; O25385; -. DR EnsemblBacteria; AAD07740; AAD07740; HP_0674. DR PATRIC; 20592633; VBIHelPyl33062_0705. DR OMA; GNTFHFI; -. DR OrthoDB; EOG61KBJB; -. DR BioCyc; HPY:HP0674-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 228 AA; 26154 MW; 9ED1CC81D23BF491 CRC64; MLAYCFITPD DLKNLKERLF IDIINAINQK KRVALDHAQI DDIQYNVLDN AFYFIFDVGN PSQLAIKVPR KSLENDELPN TKKNIFNGLI RTIYGCIDDE NSFLLENDKT IKDLNIQDLL GPLKTQAFPL SYIITDAINQ KEGVALDYAL INDIKYNLLD NTFHFIFDVG NPLLKESSQF IIEVPREALD LENVDRLVEY TLSPNNHSQS SLVYHISEGS YIIHLIDD // ID O25917_HELPY Unreviewed; 397 AA. AC O25917; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 110. DE SubName: Full=Signal-transducing protein, histidine kinase {ECO:0000313|EMBL:AAD08404.1}; GN OrderedLocusNames=HP_1364 {ECO:0000313|EMBL:AAD08404.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08404.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08404.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08404.1; -; Genomic_DNA. DR PIR; D64690; D64690. DR RefSeq; NP_208156.1; NC_000915.1. DR RefSeq; WP_000951935.1; NC_000915.1. DR ProteinModelPortal; O25917; -. DR STRING; 85962.HP1364; -. DR PaxDb; O25917; -. DR EnsemblBacteria; AAD08404; AAD08404; HP_1364. DR GeneID; 900321; -. DR KEGG; heo:C694_07040; -. DR KEGG; hpy:HP1364; -. DR PATRIC; 20594117; VBIHelPyl33062_1429. DR eggNOG; ENOG4105BZU; Bacteria. DR eggNOG; ENOG410XNMH; LUCA. DR KO; K02484; -. DR OMA; MQTHADY; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP1364-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR Pfam; PF02518; HATPase_c; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Kinase {ECO:0000313|EMBL:AAD08404.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08404.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 154 181 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 197 395 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 397 AA; 45852 MW; 1D0CA359F99D227A CRC64; MAIALTHYEK KSLKLFLGIY LGSSFVLMLV ISVLAFNYEK NEKIKMIRMD MDKMASKIAS EVIALHMQTH GDYQNALNAL ISRYKDASIA LFDSKKRVLY SNIPESANLI KNHKEAGFFS FRGEYYLLSD ETFAHLGVAK MLFKNSKPLH FSSLYRNIVL VFVVAFLCVI GVSVFLGRLF LKPIRNEITR IDHFLKNTTH ELNTPMSALV LSLKTLEDNQ QHRRIKIAIQ RMSFLYRSLS YLVMQDIERE SFVLLDLKAL IIKENTLFSE MIDYHKLEFK SDLVEVELKA KEQDFISLYS NLLMNAIKYS VMNGYIHIEL THAFLKVKNL GYEIPKDKIT ELSVRYVRFN SGVLGYGIGL GLVKKVCEKY KMRLEIHSEP SLKGSFYENS FCVQFQG // ID O25477_HELPY Unreviewed; 499 AA. AC O25477; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07845.1}; GN OrderedLocusNames=HP_0788 {ECO:0000313|EMBL:AAD07845.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07845.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07845.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07845.1; -; Genomic_DNA. DR PIR; D64618; D64618. DR RefSeq; NP_207581.1; NC_000915.1. DR RefSeq; WP_001108275.1; NC_018939.1. DR ProteinModelPortal; O25477; -. DR STRING; 85962.HP0788; -. DR PaxDb; O25477; -. DR EnsemblBacteria; AAD07845; AAD07845; HP_0788. DR GeneID; 899346; -. DR KEGG; heo:C694_04040; -. DR KEGG; hpy:HP0788; -. DR PATRIC; 20592863; VBIHelPyl33062_0820. DR OMA; KMTQAEM; -. DR OrthoDB; EOG6DC6F7; -. DR BioCyc; HPY:HP0788-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003678; Put_OMP. DR Pfam; PF02521; HP_OMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 499 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158028. SQ SEQUENCE 499 AA; 56878 MW; 4FDCA9752C293B3D CRC64; MNYKVASAKN IATLLFLLSS QSQAFDLGKI AKIKAGAESF SKVGFNNKPI NTNKGLYPTE TFMTIMAYMQ VDFTELLPKS ATANGHHLDG SLGGWGGAVI YDSTKDFINE VTGKTYGAMA WNYVGYWGGL VGQKPWASCG LATGNLTQGQ YDKMTQAEMT QLSNQEALEA STCAKGYAAH TRNYVIYNAY LRYNYKDIFE IRGGRYESPA DYMSGYNQGL DMTLNLGNFK FWWFSSFGRG FAYNEWLYNF YSPKTYTLKN GQTINPGVHA FYAIWNYKGW SIQPFVYFSP FNEYDPNFTI TYDSNPTFTG LGFRSQTDVT VLNPFYAKRF WDTYQFGMPA GKNAHSLMIK QKFEWNEYNF GFGIYKSFGN ANWMIGYHGN RLGFDFWTNT VYANTLNSLS YMMDANAFTV FAFGGGVHRK LLWGLLGRLT YGPRANEQVL SLNFGYKFTK NFSADIKFEY YNVLMHQGYK MGWNGPKLDS QPATDQDRSH IFTEIVWKL // ID O25350_HELPY Unreviewed; 224 AA. AC O25350; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit (HydC) {ECO:0000313|EMBL:AAD07693.1}; GN OrderedLocusNames=HP_0633 {ECO:0000313|EMBL:AAD07693.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07693.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07693.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07693.1; -; Genomic_DNA. DR PIR; A64599; A64599. DR RefSeq; NP_207427.1; NC_000915.1. DR RefSeq; WP_000359859.1; NC_018939.1. DR ProteinModelPortal; O25350; -. DR STRING; 85962.HP0633; -. DR PaxDb; O25350; -. DR EnsemblBacteria; AAD07693; AAD07693; HP_0633. DR GeneID; 898931; -. DR KEGG; heo:C694_03275; -. DR KEGG; hpy:HP0633; -. DR PATRIC; 20592549; VBIHelPyl33062_0663. DR eggNOG; ENOG4105X7T; Bacteria. DR eggNOG; COG1969; LUCA. DR KO; K03620; -. DR OMA; FYIAYPF; -. DR OrthoDB; EOG6B8XHX; -. DR BioCyc; HPY:HP0633-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR011577; Cyt_b561_bac/Ni-Hgenase. DR InterPro; IPR016174; Di-haem_cyt_TM. DR InterPro; IPR000516; Ni-dep_Hydgase_cyt-B. DR Pfam; PF01292; Ni_hydr_CYTB; 1. DR PRINTS; PR00161; NIHGNASECYTB. DR SUPFAM; SSF81342; SSF81342; 1. DR TIGRFAMs; TIGR02125; CytB-hydogenase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 128 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 184 205 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 13 218 Ni_hydr_CYTB. {ECO:0000259|Pfam:PF01292}. SQ SEQUENCE 224 AA; 25824 MW; FF98ADC16F9A87B9 CRC64; MDKMNKVVLH KEYSGFVRFF HWVRALSIFA LIATGFYIAY PFLQPNSSFY KGVYLLQAYV RSFHVMFGFL LISALIFRTY LFFTKESLME RKSFSQLLSP KAWIDQMKAY FLISGKPHTK GAYNPIQLVA YSTLIVLIVL MSLSGMVLYY NVYHAGLGAF LGSAFKWFET LCGGLANVRF IHHLATWGFI LFVPVHVYMV FFHSIRYESS GADSMINGYG YTKE // ID O25486_HELPY Unreviewed; 206 AA. AC O25486; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07859.1}; GN OrderedLocusNames=HP_0806 {ECO:0000313|EMBL:AAD07859.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07859.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07859.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07859.1; -; Genomic_DNA. DR PIR; F64620; F64620. DR RefSeq; NP_207599.1; NC_000915.1. DR RefSeq; WP_000883304.1; NC_018939.1. DR ProteinModelPortal; O25486; -. DR DIP; DIP-3527N; -. DR IntAct; O25486; 5. DR MINT; MINT-169664; -. DR STRING; 85962.HP0806; -. DR PaxDb; O25486; -. DR EnsemblBacteria; AAD07859; AAD07859; HP_0806. DR GeneID; 898910; -. DR KEGG; heo:C694_04130; -. DR KEGG; hpy:HP0806; -. DR PATRIC; 20592899; VBIHelPyl33062_0838. DR eggNOG; ENOG4105MD7; Bacteria. DR eggNOG; COG1451; LUCA. DR KO; K07043; -. DR OMA; IFCPNYR; -. DR OrthoDB; EOG6WHNTR; -. DR BioCyc; HPY:HP0806-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002725; DUF45. DR Pfam; PF01863; DUF45; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 206 AA; 24129 MW; F0885C70C4C2245E CRC64; MLDDIPITIQ KSKKIKTLSL NITPSLEVIL KMPNSCSQTR ASAFLKEQEA WLKKTFLSMQ EKHSLLRTNL EKYQNKILVF DEVKNANDYT LTELKKILKT YLEQKLPLIA QKMQTSYTHF SIRNNAKVLG SCSYHNRLSF ALLLVCAQKE AIDYVIIHEL AHTIHKNHSK NFWRCVQIFC PNYRALRERL KQNTIFYAQL LKTLQP // ID O25726_HELPY Unreviewed; 118 AA. AC O25726; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08147.1}; GN OrderedLocusNames=HP_1094 {ECO:0000313|EMBL:AAD08147.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08147.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08147.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08147.1; -; Genomic_DNA. DR PIR; F64656; F64656. DR RefSeq; NP_207885.1; NC_000915.1. DR RefSeq; WP_010875592.1; NC_000915.1. DR ProteinModelPortal; O25726; -. DR IntAct; O25726; 2. DR PaxDb; O25726; -. DR PRIDE; O25726; -. DR EnsemblBacteria; AAD08147; AAD08147; HP_1094. DR GeneID; 899630; -. DR KEGG; hpy:HP1094; -. DR PATRIC; 20593529; VBIHelPyl33062_1144. DR OrthoDB; EOG6K6V57; -. DR BioCyc; HPY:HP1094-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 118 AA; 13487 MW; 2FA79BA06D3A2E78 CRC64; MCERKLLFFK SNLILSFIGT CLNAYEKDNE LWALAKIYDI EAVLDLLNNE KSTSPAVYCY YEKDNAVIVD KPMLINHLAI VEQGHWDKKD RNSIDNSKIN ILDLNYPTAK AIGLFLAS // ID O25379_HELPY Unreviewed; 607 AA. AC O25379; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07736.1}; GN OrderedLocusNames=HP_0668 {ECO:0000313|EMBL:AAD07736.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07736.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07736.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07736.1; -; Genomic_DNA. DR PIR; D64603; D64603. DR ProteinModelPortal; O25379; -. DR DIP; DIP-3620N; -. DR IntAct; O25379; 1. DR MINT; MINT-167348; -. DR STRING; 85962.HP0668; -. DR REBASE; 6149; HpyAXVIII. DR PaxDb; O25379; -. DR PRIDE; O25379; -. DR EnsemblBacteria; AAD07736; AAD07736; HP_0668. DR PATRIC; 20592621; VBIHelPyl33062_0699. DR eggNOG; ENOG4108ES7; Bacteria. DR eggNOG; COG4889; LUCA. DR OrthoDB; EOG63FVXB; -. DR BioCyc; HPY:HP0668-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 4. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU004294}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004294}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 111 312 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 412 578 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 607 AA; 68760 MW; 207FD00C31CFF8C3 CRC64; MQCKFHQNSI SYNDISPFLT QLQSGVREVR FKKGIIISTS NLTSNALNAI EQIRSTGMGI DIDEITEEDF IYSRIDWEKF DPTKTQDEIP LCDKKKPRSH QTEAINATKE YFSDPKNARG KLIMACGTGK TYTSLKIMEA LDSKITLFLA PSIALLSQTF REYAQEKSEP FYASIVCSDD KVGKSKDEDN DDIKFSELPL KPSTRLEDIL SVRKKAQKEN KRFIIFSTYQ SALRIKEAQE AGLGGIDLII CDEAHRTVGA MYSSNERDDK NAFTLCHSDK NIKAKKRLYM TATPKVYSES SKAKAKESDN VIYSMDDAEI FGEEIYTLNF SKAIALDLLT DYKVIILAVR KENLSGVTNS VNKKISQLKA EGTKLDKKLI NNEFVCKIIG THKGLAKQDL IVLNEKNKED HNLQNQYDTA PSQRAINFCK SINTSKNIKD SFETIMECYD EELKKKSFKN LKISIDHIDG TMNCKDRLEK LEELNQFEPN TCKVLSNARC LSEGVDVPAL DSIVFFDGKS AMVDIIQAVG RVMRKAKRKK RGYIILPIAL EESEIQNLDE AVNNTNFKNI WKVIKALRSH DPSLVDEATF KEKIKIFGSD DGNQSQR // ID O25007_HELPY Unreviewed; 159 AA. AC O25007; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07295.1}; GN OrderedLocusNames=HP_0219 {ECO:0000313|EMBL:AAD07295.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07295.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07295.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07295.1; -; Genomic_DNA. DR PIR; C64547; C64547. DR RefSeq; NP_207017.1; NC_000915.1. DR RefSeq; WP_010875455.1; NC_000915.1. DR ProteinModelPortal; O25007; -. DR STRING; 85962.HP0219; -. DR PaxDb; O25007; -. DR PRIDE; O25007; -. DR EnsemblBacteria; AAD07295; AAD07295; HP_0219. DR GeneID; 899165; -. DR KEGG; hpy:HP0219; -. DR PATRIC; 20591661; VBIHelPyl33062_0230. DR OMA; HVDITKN; -. DR OrthoDB; EOG61KBHS; -. DR BioCyc; HPY:HP0219-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 159 AA; 18626 MW; 2EA32C9760CC556F CRC64; MVSIERMESK INRLSTKIDA LLEQQKRVIS LLETYLSVYP TQEASNKFFK SVAQGMELAP EIAQEDEEKR LYVLQYLSHV DITKNKQDSQ LKKDCLEFIQ RFNVPKPIII TALYNLRGIK PTKKEVAKQL QKLYVWEKRY QQGGIDALKD RRGRPLKKP // ID O25278_HELPY Unreviewed; 115 AA. AC O25278; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Cag pathogenicity island protein (Cag25) {ECO:0000313|EMBL:AAD07612.1}; GN OrderedLocusNames=HP_0546 {ECO:0000313|EMBL:AAD07612.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07612.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07612.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07612.1; -; Genomic_DNA. DR PIR; B64588; B64588. DR RefSeq; NP_207342.1; NC_000915.1. DR RefSeq; WP_000668162.1; NC_018939.1. DR ProteinModelPortal; O25278; -. DR IntAct; O25278; 1. DR STRING; 85962.HP0546; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25278; -. DR EnsemblBacteria; AAD07612; AAD07612; HP_0546. DR GeneID; 900038; -. DR KEGG; heo:C694_02815; -. DR KEGG; hpy:HP0546; -. DR PATRIC; 20592363; VBIHelPyl33062_0570. DR KO; K12110; -. DR OMA; KGIADIW; -. DR OrthoDB; EOG6Z3KN0; -. DR BioCyc; HPY:HP0546-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR031607; T4SS_CagC. DR Pfam; PF16943; T4SS_CagC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 61 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 81 100 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 115 AA; 11997 MW; 1ACD612B346B1BC6 CRC64; MKFFTRITDS YKKVVVTLGL VVTTNPLMAV TSPAEGVTET KTLVIQIISV LAIVGGCALG VKGIADIWKI SDDIKRGQAT VFAYAQPIAM LAVAGGIIYL STKFGFNIGE SGGAS // ID O25010_HELPY Unreviewed; 73 AA. AC O25010; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 94. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07296.1}; GN OrderedLocusNames=HP_0222 {ECO:0000313|EMBL:AAD07296.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07296.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07296.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:1X93} RP STRUCTURE BY NMR OF 31-73. RX PubMed=15723352; DOI=10.1002/prot.20406; RA Popescu A., Karpay A., Israel D.A., Peek R.M., Krezel A.M.; RT "Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of RT transcriptional regulators."; RL Proteins 59:303-311(2005). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07296.1; -; Genomic_DNA. DR PIR; F64547; F64547. DR RefSeq; NP_207020.1; NC_000915.1. DR RefSeq; WP_000415831.1; NC_018939.1. DR PDB; 1X93; NMR; -; A/B=31-73. DR PDBsum; 1X93; -. DR ProteinModelPortal; O25010; -. DR SMR; O25010; 31-73. DR STRING; 85962.HP0222; -. DR PaxDb; O25010; -. DR EnsemblBacteria; AAD07296; AAD07296; HP_0222. DR GeneID; 899989; -. DR KEGG; heo:C694_01120; -. DR KEGG; hpy:HP0222; -. DR PATRIC; 20591667; VBIHelPyl33062_0233. DR OMA; HLRETKN; -. DR OrthoDB; EOG6ZKXW8; -. DR BioCyc; HPY:HP0222-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR031895; RHH_CopG. DR InterPro; IPR010985; Ribbon_hlx_hlx. DR Pfam; PF16777; RHH_7; 1. DR SUPFAM; SSF47598; SSF47598; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:1X93}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 73 AA; 8599 MW; 88CB94306384FCC7 CRC64; MEKTENTDET RLRGTKNKLG RKPKADANKK TRAVSLYFSD EQYQKLEKMA NEEEESVGSY IKRYILKALR KIE // ID O25430_HELPY Unreviewed; 101 AA. AC O25430; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07789.1}; GN OrderedLocusNames=HP_0730 {ECO:0000313|EMBL:AAD07789.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07789.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07789.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07789.1; -; Genomic_DNA. DR PIR; B64611; B64611. DR RefSeq; NP_207524.1; NC_000915.1. DR RefSeq; WP_000491700.1; NC_018939.1. DR ProteinModelPortal; O25430; -. DR DIP; DIP-3385N; -. DR IntAct; O25430; 4. DR MINT; MINT-174955; -. DR STRING; 85962.HP0730; -. DR PaxDb; O25430; -. DR EnsemblBacteria; AAD07789; AAD07789; HP_0730. DR GeneID; 900231; -. DR KEGG; heo:C694_03755; -. DR KEGG; hpy:HP0730; -. DR PATRIC; 20592747; VBIHelPyl33062_0762. DR OMA; ENDPSNK; -. DR OrthoDB; EOG6GR3CN; -. DR BioCyc; HPY:HP0730-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 101 AA; 11575 MW; 60D5C641B682B00E CRC64; MFSKICSSLK LLNALKGFLF KRISSPVQSA RIANMVLDIK NALEGENDPS NKAGKTLDLI VGFKKEYPQD FDELFEILKE LIQEYEQNPD EIKQNLKEIL K // ID O25845_HELPY Unreviewed; 594 AA. AC O25845; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (OppA) {ECO:0000313|EMBL:AAD08296.1}; GN OrderedLocusNames=HP_1252 {ECO:0000313|EMBL:AAD08296.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08296.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08296.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08296.1; -; Genomic_DNA. DR PIR; D64676; D64676. DR RefSeq; NP_208044.1; NC_000915.1. DR RefSeq; WP_000231350.1; NC_018939.1. DR ProteinModelPortal; O25845; -. DR STRING; 85962.HP1252; -. DR PaxDb; O25845; -. DR EnsemblBacteria; AAD08296; AAD08296; HP_1252. DR GeneID; 899906; -. DR KEGG; heo:C694_06470; -. DR KEGG; hpy:HP1252; -. DR PATRIC; 20593881; VBIHelPyl33062_1311. DR eggNOG; ENOG4105E43; Bacteria. DR eggNOG; COG4166; LUCA. DR KO; K13893; -. DR OMA; WRIESTA; -. DR OrthoDB; EOG6DRPCJ; -. DR BioCyc; HPY:HP1252-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR030678; Peptide/Ni-bd. DR InterPro; IPR000914; SBP_5_dom. DR Pfam; PF00496; SBP_bac_5; 1. DR PIRSF; PIRSF002741; MppA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 93 502 SBP_bac_5. {ECO:0000259|Pfam:PF00496}. SQ SEQUENCE 594 AA; 68795 MW; DF0A3DB00C8C0E66 CRC64; MVFKILGLWL GVFCFLEATP YLYLGEEPKY KDNFTHFEYA NPNAKKGGVL RNDAIGTFDS LNPFALKGTK AEGLDLIYDT LMVQSLDEPF AEYPLIAKDA EVAKDNSYVI FTIDKRARFS NNAPILASDV KFSFDTIMKL GSPIYRQYYQ DVKKAVVLDK HHVKFIFKTT ENKELPLILG QLQIFSKKAF QEDYFEKNPL LIPVSSGPYV IASFDVGKKI TYQRNPNYWA RNLPSRKGQF NFDQIKFEYY KDETIALQAF LSGAYDWRLE STAKVWARGY VGKAMDNKEI TKYLIAHKMP SGMQGFFFNT RREIFKDKRV REALFYAFDF EWANKNLFFS QYKRTTSFFS NSIYASPPLP SPEEKALLAP YEKSLDERVF KEPYVVPRTD GVDVLGYNLR ENLKYAQKLL ESTGFSYKNM RLVDKNNKPF SFTLLLNSPA FERLALAFAK NLRVLGIEMK IQRVDLSQYV NRIKSYDFDM IVGVIGQSSF PGNEQRFYFG SLSAKEKGTR NYAGISSKAV DDLIEKIINA KDYKEQLAAI QAMDRVLLWG FYVIPHFYLP NYRIAAYNYI GMPEISPSYG FSPYLWWIKE KDLQ // ID O25941_HELPY Unreviewed; 98 AA. AC O25941; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08439.1}; GN OrderedLocusNames=HP_1391 {ECO:0000313|EMBL:AAD08439.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08439.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08439.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08439.1; -; Genomic_DNA. DR PIR; G64693; G64693. DR RefSeq; NP_208182.1; NC_000915.1. DR RefSeq; WP_000539103.1; NC_018939.1. DR ProteinModelPortal; O25941; -. DR DIP; DIP-3722N; -. DR IntAct; O25941; 1. DR MINT; MINT-164128; -. DR STRING; 85962.HP1391; -. DR PaxDb; O25941; -. DR EnsemblBacteria; AAD08439; AAD08439; HP_1391. DR GeneID; 899905; -. DR KEGG; heo:C694_07185; -. DR KEGG; hpy:HP1391; -. DR PATRIC; 20594169; VBIHelPyl33062_1455. DR OMA; ELWHEER; -. DR OrthoDB; EOG6HMXK0; -. DR BioCyc; HPY:HP1391-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 98 AA; 10960 MW; 41C9AA8730D578FB CRC64; MGVSALGNVT YINQNAPLNS AIQQGARSDM LDLAQSFQSK LELAQETRAL ENMQAISDKD PKEGSKNRYQ NSQRAKAFGL EEEEIELWHE EHLLDIVG // ID O25870_HELPY Unreviewed; 485 AA. AC O25870; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08329.1}; GN OrderedLocusNames=HP_1283 {ECO:0000313|EMBL:AAD08329.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08329.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08329.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08329.1; -; Genomic_DNA. DR PIR; C64680; C64680. DR RefSeq; NP_208075.1; NC_000915.1. DR RefSeq; WP_000838751.1; NC_018939.1. DR ProteinModelPortal; O25870; -. DR DIP; DIP-3700N; -. DR IntAct; O25870; 1. DR MINT; MINT-181212; -. DR STRING; 85962.HP1283; -. DR CAZy; GT9; Glycosyltransferase Family 9. DR PaxDb; O25870; -. DR EnsemblBacteria; AAD08329; AAD08329; HP_1283. DR GeneID; 898796; -. DR KEGG; heo:C694_06630; -. DR KEGG; hpy:HP1283; -. DR PATRIC; 20593945; VBIHelPyl33062_1343. DR eggNOG; ENOG4108RDX; Bacteria. DR eggNOG; COG0859; LUCA. DR OMA; GVFCTHP; -. DR OrthoDB; EOG6SBSZK; -. DR BioCyc; HPY:HP1283-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR InterPro; IPR002201; Glyco_trans_9. DR Pfam; PF01075; Glyco_transf_9; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 36 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 485 AA; 56944 MW; FC815BA87F99C50B CRC64; MKSLLSLFLK SKLSYLYYCP YIAFVLMVAT IAKIPLIQKI PVIRRFFNSR YSFQKDSLIR IQNQLDRLLT LTKPAPPPIR KKTLCFIRLD IIGDYILYRN FLPLFKKYFE DYETTFIGNA TIKGIATHCD SQYIDKFIFL DNAYWEKYLR IGVNGSRLSK LKELLFFLPK FMRKRYEDVS NLRKESYEIC INSSMFYFST KEDAIIKHLI AENKVGVFCT HPIESSFRTD YRKRGEIRKS FYTHLFYPKE VPQFLYDSNQ DFFQSFFKHF KGVDIGFVEL ELKLPIAFEY EKFKNILKPP YGVLNLGASD DSRVYKRFDE MIYFLNPDYQ LVLCGNSKKD EELANSILKR HKNAISLVNQ TGLIEYLYLL KNASFAMGNE SSITHLSACL KIPYAFIVSS GLSSPRFHPY PKEVGPNIHM IYPRDFQKII SRSSDWMFKA MTMPHPPVDF VNPQDIISAI KRFAPHLLKE DAPSNTNETT YFERV // ID O25272_HELPY Unreviewed; 237 AA. AC O25272; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Cag pathogenicity island protein (Cag18) {ECO:0000313|EMBL:AAD07605.1}; GN OrderedLocusNames=HP_0539 {ECO:0000313|EMBL:AAD07605.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07605.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07605.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3ZCI, ECO:0000213|PDB:3ZCJ} RP X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 21-237, AND DISULFIDE BONDS. RX PubMed=24076404; DOI=10.1016/J.STR.2013.08.018; RA Barden S., Lange S., Tegtmeyer N., Conradi J., Sewald N., Backert S., RA Niemann H.H.; RT "A helical RGD motif promoting cell adhesion: crystal structures of RT the Helicobacter pylori type IV secretion system pilus protein CagL."; RL Structure 21:1931-1941(2013). RN [3] {ECO:0000213|PDB:4CII} RP X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 21-237, AND DISULFIDE BONDS. RX PubMed=24816107; DOI=10.1107/S1399004714003150; RA Barden S., Schomburg B., Conradi J., Backert S., Sewald N., RA Niemann H.H.; RT "Structure of a three-dimensional domain-swapped dimer of the RT Helicobacter pylori type IV secretion system pilus protein CagL."; RL Acta Crystallogr. D 70:1391-1400(2014). RN [4] {ECO:0000213|PDB:4X5U} RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 21-237, AND DISULFIDE BONDS. RX PubMed=25837254; DOI=10.1074/jbc.M115.641829; RA Bonsor D.A., Pham K.T., Beadenkopf R., Diederichs K., Haas R., RA Beckett D., Fischer W., Sundberg E.J.; RT "Integrin engagement by the helical RGD motif of the Helicobacter RT pylori CagL protein is regulated by pH-induced displacement of a RT neighboring helix."; RL J. Biol. Chem. 290:12929-12940(2015). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07605.1; -; Genomic_DNA. DR PIR; C64587; C64587. DR RefSeq; NP_207335.1; NC_000915.1. DR RefSeq; WP_000855299.1; NC_018939.1. DR PDB; 3ZCI; X-ray; 2.20 A; A=21-237. DR PDB; 3ZCJ; X-ray; 3.25 A; A/B/C/D/E/F=21-237. DR PDB; 4CII; X-ray; 2.15 A; A=21-237. DR PDB; 4X5U; X-ray; 2.30 A; A=21-237. DR PDBsum; 3ZCI; -. DR PDBsum; 3ZCJ; -. DR PDBsum; 4CII; -. DR PDBsum; 4X5U; -. DR ProteinModelPortal; O25272; -. DR DIP; DIP-3544N; -. DR IntAct; O25272; 4. DR MINT; MINT-161915; -. DR STRING; 85962.HP0539; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25272; -. DR EnsemblBacteria; AAD07605; AAD07605; HP_0539. DR GeneID; 900036; -. DR KEGG; heo:C694_02780; -. DR KEGG; hpy:HP0539; -. DR PATRIC; 20592349; VBIHelPyl33062_0563. DR KO; K12103; -. DR OMA; LMLAHNK; -. DR OrthoDB; EOG62C9CC; -. DR BioCyc; HPY:HP0539-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3ZCI, ECO:0000213|PDB:3ZCJ, KW ECO:0000213|PDB:4CII, ECO:0000213|PDB:4X5U}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 204 231 {ECO:0000256|SAM:Coils}. FT DISULFID 128 139 {ECO:0000213|PDB:3ZCJ, FT ECO:0000213|PDB:4CII, FT ECO:0000213|PDB:4X5U}. SQ SEQUENCE 237 AA; 26840 MW; E92A988319DF4487 CRC64; MKTLVKNTIS SFLLLSVLMA EDITSGLKQL DSTYQETNQQ VLKNLDEIFS TTSPSANNEM GEEDALNIKK AAIALRGDLA LLKANFEANE LFFISEDVIF KTYMSSPELL LTYMKINPLD QNTAEQQCGI SDKVLVLYCE GKLKIEQEKQ NIRERLETSL KAYQSNIGGT ASLITASQTL VESLKNKNFI KGIRKLMLAH NKVFLNYLEE LDALERSLEQ SKRQYLQERQ SSKIIVK // ID O25617_HELPY Unreviewed; 363 AA. AC O25617; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08016.1}; GN OrderedLocusNames=HP_0964 {ECO:0000313|EMBL:AAD08016.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08016.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08016.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08016.1; -; Genomic_DNA. DR PIR; D64640; D64640. DR RefSeq; NP_207756.1; NC_000915.1. DR RefSeq; WP_010875568.1; NC_000915.1. DR ProteinModelPortal; O25617; -. DR STRING; 85962.HP0964; -. DR PaxDb; O25617; -. DR PRIDE; O25617; -. DR EnsemblBacteria; AAD08016; AAD08016; HP_0964. DR GeneID; 899497; -. DR KEGG; hpy:HP0964; -. DR PATRIC; 20593241; VBIHelPyl33062_1002. DR OMA; RYTERVE; -. DR OrthoDB; EOG67T5KC; -. DR BioCyc; HPY:HP0964-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 314 362 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 363 AA; 41717 MW; A79AE53F287392EE CRC64; MLQCMAEFNQ RLPPDAFNSV DKSEESLLFL SNMGAIKERL EKAASRKEEI ISQRLQDYAQ SQANNLHNLI AQLFQDLEDE KKRVKNADMG AIKKQIEAYE KLSGNIEIGF REAYEEFIFH FIKNTRDGLN ETLTKAIQKA SALAREEEEE ERYTERVKQG GLFGSFKRNF LWWADDDAGY DEVSRTRATI KAGAVLDYLT EMHERCENAL NDSADSFKVV FRKELYAKVF SQLREIISDD LIDEVAFQKS VMAVLDSIEF KEFDYTDKLP SEIRGKTGFL KGDEADAFIQ SVGNYVRNFE SEAKKDVKGY IQGLREALER QNFASDTLQK LKENMQNLQN QVQNKEQSIA QLDAQIQALK GIQ // ID O24949_HELPY Unreviewed; 211 AA. AC O24949; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07211.1}; GN OrderedLocusNames=HP_0137 {ECO:0000313|EMBL:AAD07211.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07211.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07211.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07211.1; -; Genomic_DNA. DR PIR; A64537; A64537. DR RefSeq; NP_206937.1; NC_000915.1. DR RefSeq; WP_000032040.1; NC_018939.1. DR ProteinModelPortal; O24949; -. DR DIP; DIP-3221N; -. DR IntAct; O24949; 25. DR MINT; MINT-161456; -. DR STRING; 85962.HP0137; -. DR PaxDb; O24949; -. DR DNASU; 898907; -. DR EnsemblBacteria; AAD07211; AAD07211; HP_0137. DR GeneID; 898907; -. DR KEGG; heo:C694_00675; -. DR KEGG; hpy:HP0137; -. DR PATRIC; 20591491; VBIHelPyl33062_0145. DR eggNOG; ENOG4107ZW7; Bacteria. DR eggNOG; COG1556; LUCA. DR KO; K00782; -. DR OMA; GANPIYR; -. DR OrthoDB; EOG6VB704; -. DR BioCyc; HPY:HP0137-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.10420; -; 1. DR InterPro; IPR024185; FTHF_cligase-like. DR InterPro; IPR003741; LUD_dom. DR Pfam; PF02589; DUF162; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 43 210 DUF162. {ECO:0000259|Pfam:PF02589}. SQ SEQUENCE 211 AA; 23611 MW; D461F72727F9C89C CRC64; MSKELILKRI KEARAKHAIQ GANPIYRNII KVEFEDLVEE YKHFQVLNKA EVIESAKENL EQAILKALEN FKSKKILHST DLNLNFEAFK DFTLQPYDKE IEAMREELFE IDTALLHGVC GISSLGMIGA VSSHASPRLL SLITLNCIIL LKKESIVRNL SEGMQALKNQ SQNGALPTNM LLIGGPSRTA DIELKTVFGV HGPQKVAIIL Y // ID O25742_HELPY Unreviewed; 256 AA. AC O25742; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD08161.1}; GN OrderedLocusNames=HP_1117 {ECO:0000313|EMBL:AAD08161.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08161.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08161.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08161.1; -; Genomic_DNA. DR PIR; E64659; E64659. DR RefSeq; NP_207908.1; NC_000915.1. DR RefSeq; WP_000540113.1; NC_000915.1. DR ProteinModelPortal; O25742; -. DR IntAct; O25742; 1. DR STRING; 85962.HP1117; -. DR PaxDb; O25742; -. DR PRIDE; O25742; -. DR EnsemblBacteria; AAD08161; AAD08161; HP_1117. DR GeneID; 899653; -. DR KEGG; hpy:HP1117; -. DR PATRIC; 20593575; VBIHelPyl33062_1167. DR eggNOG; ENOG4105EUU; Bacteria. DR eggNOG; COG0790; LUCA. DR KO; K07126; -. DR OMA; EKRNYIY; -. DR OrthoDB; EOG6TJ7WZ; -. DR BioCyc; HPY:HP1117-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR006597; Sel1-like. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF08238; Sel1; 5. DR SMART; SM00671; SEL1; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}. FT CHAIN 24 256 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157921. SQ SEQUENCE 256 AA; 29012 MW; 78F478C8D74D093F CRC64; MGYASKLALK ICLASLCLFS ALGAEHLEQK RNYIYKGEEA YNNKEYERAA SFYKSAIKNG EPLAYVLLGI MYENGRGVPK DEKKAAEYFQ KAVDNDIPRG YNNLGVMYKE GRGVPKDEKK AVEYFRIATE KGYTNAYINL GIMYMEGRGV PSNYVKATEC FRKAMHKGNV EAYILLGDIY YSGNDQLGIE PDKDKAIVYY KMAADMSSSR AYEGLAESYQ YGLGVEKDKK KAEEYMQKAC DFDIDKNCKK KNTSSR // ID O25003_HELPY Unreviewed; 552 AA. AC O25003; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Sodium-dependent transporter (HuNaDC-1) {ECO:0000313|EMBL:AAD07282.1}; GN OrderedLocusNames=HP_0214 {ECO:0000313|EMBL:AAD07282.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07282.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07282.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07282.1; -; Genomic_DNA. DR PIR; F64546; F64546. DR RefSeq; NP_207012.1; NC_000915.1. DR RefSeq; WP_000427574.1; NC_000915.1. DR ProteinModelPortal; O25003; -. DR DIP; DIP-3090N; -. DR IntAct; O25003; 2. DR MINT; MINT-166640; -. DR STRING; 85962.HP0214; -. DR PaxDb; O25003; -. DR PRIDE; O25003; -. DR EnsemblBacteria; AAD07282; AAD07282; HP_0214. DR GeneID; 900012; -. DR KEGG; hpy:HP0214; -. DR PATRIC; 20591651; VBIHelPyl33062_0225. DR eggNOG; ENOG4105C8P; Bacteria. DR eggNOG; COG0471; LUCA. DR KO; K14445; -. DR OMA; RTNFSIC; -. DR OrthoDB; EOG6GN72M; -. DR BioCyc; HPY:HP0214-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0006814; P:sodium ion transport; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR001898; Na/sul_symport. DR Pfam; PF00939; Na_sulph_symp; 1. DR TIGRFAMs; TIGR00785; dass; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 22 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 111 129 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 150 168 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 174 193 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 242 263 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 283 310 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 339 359 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 371 390 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 402 420 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 432 455 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 462 481 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 487 506 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 527 551 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 552 AA; 59921 MW; E78801969E617E16 CRC64; MENHSHANTH TDTRTDDKST KIVRLLGLIG GALIALVIYY ALNSQMPHIV EEIPKLSSLN YKAMPVVAGV AVLMGIWWMT EAIDLPATAL LPLVLFSVFS VDQFASVSSS YASPIIFLFM GGFILALSMQ KWNLHTRIAL SIILLVGTSP RRLILGFMMA TGFLSMWVSN TATAVMMLPV GMSVLQLVAK LVGKEDASNS WHQKEEITKA HGGIMSNIVH KGKDITQVIQ EKTTIYRTNF SICLMLGIAY AASIGSLGTL IGTPPNALLA GYMKTAFNIE IDFAQWMVFG TPLAFIMLIL AWLLLTYVIF PLKIKEIPGG KEVIRVELKK LGRLSQAEIS VGIIFILASL GWIFLGVMLK SWGVKIDKID SVIAMGVSAL LFILPANHQG DRLIDWGVAK KLPWDVLLLF GGGLALSAQF SKTGLSLWIG HLVSGFSHLP ILFIIVMVTL MVIFLTEITS NTATAAAFLP VIGGVAMGMG YENHQSLLLT IPVALSATCA FMLPVVTPPN AIAYGSGYVK ITDMIKAGLW LNLVGVVLIS TFSYFLVSLI FN // ID O25793_HELPY Unreviewed; 443 AA. AC O25793; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE SubName: Full=Multidrug-efflux transporter {ECO:0000313|EMBL:AAD08227.1}; GN OrderedLocusNames=HP_1181 {ECO:0000313|EMBL:AAD08227.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08227.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08227.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08227.1; -; Genomic_DNA. DR PIR; E64667; E64667. DR RefSeq; NP_207972.1; NC_000915.1. DR RefSeq; WP_000473297.1; NC_018939.1. DR ProteinModelPortal; O25793; -. DR STRING; 85962.HP1181; -. DR PaxDb; O25793; -. DR EnsemblBacteria; AAD08227; AAD08227; HP_1181. DR GeneID; 899943; -. DR KEGG; heo:C694_06110; -. DR KEGG; hpy:HP1181; -. DR PATRIC; 20593717; VBIHelPyl33062_1236. DR eggNOG; ENOG4107RDB; Bacteria. DR eggNOG; COG0477; LUCA. DR OMA; ANTVFYA; -. DR OrthoDB; EOG6T7N4X; -. DR BioCyc; HPY:HP1181-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 2. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 36 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 90 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 96 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 128 152 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 178 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 199 223 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 235 254 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 287 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 293 311 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 331 352 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 358 380 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 4 385 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 443 AA; 48844 MW; 986093E7238A8E5A CRC64; MFKKIFPLAL VSSLRFLGLF IVLPVISLYA DSFHSSSPLL VGLAVGGAYL TQIVFQTPMG ILSDKIGRKV VVMVCLLLFL AGSLVCFIAN DIVWLVIGRF IQGMGALGGV ISAMVADEVK EEERTKAMAI MGAFIFISFT ISMAIGPGVV AFLGGAKWLF LLTAILTLLS LLMLLKVKDA PKISYQIKNI KAYQPNSKAL YLLYLSSFFE KAFMTLIFVL IPLALVNEFH KDESFLILVY VPGALLGVLS MGIASVMAEK YNKPKGVMLS GVLLFIVSYL CLFLADSSFL GKYLWLFIVG VAFFFIGFAT LEPIMQSLAS KFAKVHEKGK VLGQFTTFGY LGSFVGGVSG GLSYHHLGVS NTSLIVVALG LIWGLSLFLL NNPSKQKNVY FPLDAYNEEQ FETLEDKIIE WYVNISEEII IVKYNSDHIS EEEIIHLAQN FRK // ID O25937_HELPY Unreviewed; 350 AA. AC O25937; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 96. DE SubName: Full=DNA polymerase III epsilon subunit (DnaQ) {ECO:0000313|EMBL:AAD08426.1}; GN OrderedLocusNames=HP_1387 {ECO:0000313|EMBL:AAD08426.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08426.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08426.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08426.1; -; Genomic_DNA. DR PIR; C64693; C64693. DR RefSeq; NP_208178.1; NC_000915.1. DR RefSeq; WP_000590937.1; NC_000915.1. DR ProteinModelPortal; O25937; -. DR STRING; 85962.HP1387; -. DR PaxDb; O25937; -. DR PRIDE; O25937; -. DR EnsemblBacteria; AAD08426; AAD08426; HP_1387. DR GeneID; 900292; -. DR KEGG; hpy:HP1387; -. DR PATRIC; 20594163; VBIHelPyl33062_1452. DR eggNOG; ENOG4107ZBF; Bacteria. DR eggNOG; COG0847; LUCA. DR KO; K02342; -. DR OrthoDB; EOG6PKFH3; -. DR BioCyc; HPY:HP1387-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 3.30.420.10; -; 1. DR InterPro; IPR006054; DnaQ. DR InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF00929; RNase_T; 1. DR SMART; SM00479; EXOIII; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR TIGRFAMs; TIGR00573; dnaq; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 108 272 Exonuclease. {ECO:0000259|SMART:SM00479}. SQ SEQUENCE 350 AA; 40046 MW; B260A3BE9CF5CD1D CRC64; MIKISLNSNK RAWMWWFQGV IFLNPKIVSW LLKAYRMSDN LLHKDIQALI ARLKRQDLSL GMLEKSLSRL IHDEINLEYL KACGLNFIET SENLITLKNL KTPLKDEVFS FIDLETTGSC PIKHEILEIG AVQVKGGEII NRFETLVKVK SVPDYIAELT GITYEDTLNA PSAHEALQEL RLFLGNSVFV AHNANFDYNF LGRYFVEKLH CPLLNLKLCT LDLSKRAILS MRYSLSFLKE LLGFGIEVSH RAYADALASY KLFEICLLNL PSYIKTTMDL IDFSKCANTL IKRPPKARYQ EIPSPFSLFE KTKGLFNHKS NQLNESCLMG FMGTEILASL FDTFECCLVF // ID O25611_HELPY Unreviewed; 393 AA. AC O25611; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=3-deoxy-d-manno-octulosonic-acid transferase (KdtA) {ECO:0000313|EMBL:AAD08000.1}; GN OrderedLocusNames=HP_0957 {ECO:0000313|EMBL:AAD08000.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08000.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08000.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08000.1; -; Genomic_DNA. DR PIR; E64639; E64639. DR RefSeq; NP_207749.1; NC_000915.1. DR RefSeq; WP_000472177.1; NC_018939.1. DR ProteinModelPortal; O25611; -. DR STRING; 85962.HP0957; -. DR CAZy; GT30; Glycosyltransferase Family 30. DR PaxDb; O25611; -. DR DNASU; 899490; -. DR EnsemblBacteria; AAD08000; AAD08000; HP_0957. DR GeneID; 899490; -. DR KEGG; heo:C694_04930; -. DR KEGG; hpy:HP0957; -. DR PATRIC; 20593227; VBIHelPyl33062_0995. DR eggNOG; ENOG4105D8A; Bacteria. DR eggNOG; COG1519; LUCA. DR KO; K02527; -. DR OMA; FEAELWL; -. DR OrthoDB; EOG6H7FNN; -. DR BioCyc; HPY:HP0957-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR007507; Glycos_transf_N. DR Pfam; PF04413; Glycos_transf_N; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08000.1}. FT DOMAIN 34 202 Glycos_transf_N. FT {ECO:0000259|Pfam:PF04413}. SQ SEQUENCE 393 AA; 45623 MW; 6428BA3321554F46 CRC64; MFKFFYLLFL TLGHLLGAPF IFFWSFKEKY RHSLKARFFL KDNFLKSEPV FWFHACSYGE VKSLEPIIHA LKEPILISVT TNTGFELAAQ TYQHSKHIEV RYLPFETLLF AWKKNLKRLK TLVVTEAELW FNVFDTAQKL GAKTMLINAR ISVRSYPKYQ RFSFFYALLF KRIDLILAQS KEDKKRLLNL GAKKVVDFLN IKRFSKPVIT SFYPKNPSAL NIVLASTHEG EEELGLKAFL ELKKTFKNAR LIVVPRHPER FKSVQDLLQN TLKTTPFSWE CFSSKGFVEC DILLVDSLGE LNNFYQIADI VILGGSFVKM GGHNPLEPAF FNARLITGEY IFNQVALFEL VKPYKIVPKE DLLDALLDYK NLGMARFLEN GHDLNELLAF IKH // ID O25543_HELPY Unreviewed; 791 AA. AC O25543; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 96. DE SubName: Full=Iron-regulated outer membrane protein (FrpB) {ECO:0000313|EMBL:AAD07924.1}; GN OrderedLocusNames=HP_0876 {ECO:0000313|EMBL:AAD07924.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07924.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07924.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell outer membrane CC {ECO:0000256|RuleBase:RU003357}. CC -!- SIMILARITY: Belongs to the TonB-dependent receptor family. CC {ECO:0000256|RuleBase:RU003357}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07924.1; -; Genomic_DNA. DR PIR; D64629; D64629. DR RefSeq; NP_207670.1; NC_000915.1. DR RefSeq; WP_000479960.1; NC_018939.1. DR ProteinModelPortal; O25543; -. DR IntAct; O25543; 1. DR MINT; MINT-183472; -. DR STRING; 85962.HP0876; -. DR PaxDb; O25543; -. DR EnsemblBacteria; AAD07924; AAD07924; HP_0876. DR GeneID; 899405; -. DR KEGG; heo:C694_04485; -. DR KEGG; hpy:HP0876; -. DR PATRIC; 20593041; VBIHelPyl33062_0908. DR eggNOG; ENOG4107QPX; Bacteria. DR eggNOG; COG1629; LUCA. DR KO; K02014; -. DR OMA; KANGNIY; -. DR OrthoDB; EOG6384F1; -. DR BioCyc; HPY:HP0876-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR Gene3D; 2.40.170.20; -; 4. DR InterPro; IPR012910; Plug_dom. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF07715; Plug; 1. DR Pfam; PF00593; TonB_dep_Rec; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU003357}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW TonB box {ECO:0000256|RuleBase:RU003357}. FT DOMAIN 47 142 Plug. {ECO:0000259|Pfam:PF07715}. FT DOMAIN 510 790 TonB_dep_Rec. {ECO:0000259|Pfam:PF00593}. SQ SEQUENCE 791 AA; 88525 MW; 419F3A0CA6EB9C51 CRC64; MFLRVYPKLR YALCFPLLAE TCYSEERTLN KVTTQAKRIF TYNNEFKVTS KELDQRQSNE VKDLFRTNPD VNVGGGSVMG QKIYVRGVED RLLRVTVDGA AQNGNIYHHQ GNTVIDPGML KSVEVTKGAA NASAGPGAIA GVIKMETKGA ADFIPRGKNY AASGAVSFYT NFGDRETFRS AYQNAHFDII AYYTHQNIFY YRSGATAMKN LFNPTQADKE PGTPSEQNNA LIKMNGYLSD RDTLTFSWNM TRDNATRPLR SNAIGLAYPC EAPFSPDSSQ GCPNVLDSFT RYMYHSINSA NNLSLQYKRE AGNSFGDPRL DFTLYTSIRN AQFDPLFDPN GVYAKFPTSL ASAWEKENYP CVEGAYCTPS FSDVDKPSSQ PRNLFLNNTG LNLKVAHVID EATDSLFEYG FNYQNLSVFD ARIPKSELYR PNQVYTDDKG QKQIACSLVN NNPNDPTLCQ RGKANGNIYG GYVQANYSPH KIITFGAGVR WDAYTLYDKD WNHRYTQGFS PSAALVLSPI EPLSLKITYS QVTRGVMPGD GVYMRQNDLR YAKNIKPEVG SNAEFNIDYS SQYFSGRAAA FYQALDNFIS QYAQNLIVTN LSQAIRIYGY EVGGTFRYKG VSLNVGVSRT WPTTRGYLMA DSYELAASTG NVFIIKLDYT IPKTGINLAW LSRFVTGLDY CGFDIYLPDY GTAEKPKTPT DLAKCGSQLG LVHMHKPGYG VSNFYINWSP KTKSRWKGLL LSAVFNNVFN KFYVDQTSPY VMSPDMPGTD AVKRAIAEPG FNARFEVAYK W // ID O24878_HELPY Unreviewed; 351 AA. AC O24878; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=NADH-ubiquinone oxidoreductase subunit {ECO:0000313|EMBL:AAD07105.1}; GN OrderedLocusNames=HP_0037 {ECO:0000313|EMBL:AAD07105.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07105.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07105.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07105.1; -; Genomic_DNA. DR PIR; E64524; E64524. DR RefSeq; NP_206839.1; NC_000915.1. DR RefSeq; WP_000786660.1; NC_018939.1. DR ProteinModelPortal; O24878; -. DR STRING; 85962.HP0037; -. DR PaxDb; O24878; -. DR EnsemblBacteria; AAD07105; AAD07105; HP_0037. DR GeneID; 899145; -. DR KEGG; heo:C694_00175; -. DR KEGG; hpy:HP0037; -. DR PATRIC; 20591273; VBIHelPyl33062_0038. DR eggNOG; COG3846; LUCA. DR KO; K12052; -. DR OMA; WFITPLT; -. DR OrthoDB; EOG6CVV8T; -. DR BioCyc; HPY:HP0037-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0030255; P:protein secretion by the type IV secretion system; IEA:InterPro. DR InterPro; IPR007688; Conjugal_tfr_TrbL/VirB6. DR Pfam; PF04610; TrbL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:AAD07105.1}. FT TRANSMEM 36 54 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 171 190 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 226 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 238 262 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 351 AA; 39786 MW; A4FA7E812013B51A CRC64; MKNDAYEIIL SWFITPLTAI LGRFAEFFLY TLHAQLVFNS VVALAFMLFA YRSLKEQNFF SASALTEALL FVGFFALFNY ALKNPMHFYE FFQNAIFIAP NMIAQSLSQS LSNFSDHALS LDFIFNHGFY ALSFISDLSH NEMSVWLFLS VLQGLFLSVL FAIIILVYLE VHVWCSLGVL FLAFGFFKTW RSVVVICLKK CFALGFYKPF LLLVGFLNVS VTKALIDAHM QEKQDLSLLL VVALFLCCVF IIGVPFFINA LFRVQNSLKE TYKLATNLSA NLSQNALNSL QYITTPPASS SVSSSMSESV SKEKETHSPT FKVETTQLDV KIPNFKQKKV KKDTINTKNE I // ID O26065_HELPY Unreviewed; 167 AA. AC O26065; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 105. DE SubName: Full=Ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (FbcF) {ECO:0000313|EMBL:AAD08580.1}; GN OrderedLocusNames=HP_1540 {ECO:0000313|EMBL:AAD08580.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08580.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08580.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 Rieske domain. CC {ECO:0000256|RuleBase:RU004493}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08580.1; -; Genomic_DNA. DR PIR; D64712; D64712. DR RefSeq; NP_208331.1; NC_000915.1. DR RefSeq; WP_000763654.1; NC_018939.1. DR ProteinModelPortal; O26065; -. DR IntAct; O26065; 3. DR MINT; MINT-4074429; -. DR STRING; 85962.HP1540; -. DR PaxDb; O26065; -. DR EnsemblBacteria; AAD08580; AAD08580; HP_1540. DR GeneID; 899751; -. DR KEGG; heo:C694_07980; -. DR KEGG; hpy:HP1540; -. DR PATRIC; 20594503; VBIHelPyl33062_1619. DR eggNOG; ENOG4107ZIS; Bacteria. DR eggNOG; COG0723; LUCA. DR KO; K00411; -. DR OMA; QPAYAQN; -. DR OrthoDB; EOG6RNQD9; -. DR BioCyc; HPY:HP1540-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016679; F:oxidoreductase activity, acting on diphenols and related substances as donors; IEA:InterPro. DR Gene3D; 2.102.10.10; -; 1. DR InterPro; IPR017941; Rieske_2Fe-2S. DR InterPro; IPR014349; Rieske_Fe-S_prot. DR InterPro; IPR006311; TAT_signal. DR PANTHER; PTHR10134; PTHR10134; 1. DR Pfam; PF00355; Rieske; 1. DR SUPFAM; SSF50022; SSF50022; 1. DR PROSITE; PS51296; RIESKE; 1. DR PROSITE; PS51318; TAT; 1. PE 4: Predicted; KW 2Fe-2S {ECO:0000256|RuleBase:RU004492}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Iron {ECO:0000256|RuleBase:RU004492}; KW Iron-sulfur {ECO:0000256|RuleBase:RU004492}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|RuleBase:RU004492}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 9 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 97 153 Rieske. {ECO:0000259|PROSITE:PS51296}. SQ SEQUENCE 167 AA; 18271 MW; BB05C9F83014B988 CRC64; MADIQRRDFL GMSLASVTAI GAIASLVAMK KTWDPLPSVV SAGFTTIDVA NMQEGQFSTV EWRGKPVYIL KRSKKEGFNE KRDFKVGESV FTTAIQICTH LGCIPTYQDE EKGFLCPCHG GRFTSDGVNI AGTPPPRPFD IPPFKIEGTK ITFGEAGAEY KKMMAKA // ID O25177_HELPY Unreviewed; 417 AA. AC O25177; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07494.1}; GN OrderedLocusNames=HP_0425 {ECO:0000313|EMBL:AAD07494.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07494.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07494.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07494.1; -; Genomic_DNA. DR PIR; A64573; A64573. DR RefSeq; NP_207223.1; NC_000915.1. DR RefSeq; WP_001124691.1; NC_018939.1. DR ProteinModelPortal; O25177; -. DR STRING; 85962.HP0425; -. DR PaxDb; O25177; -. DR EnsemblBacteria; AAD07494; AAD07494; HP_0425. DR GeneID; 900073; -. DR KEGG; heo:C694_02165; -. DR KEGG; hpy:HP0425; -. DR PATRIC; 20592101; VBIHelPyl33062_0440. DR eggNOG; COG0608; LUCA. DR OMA; EVDWIDK; -. DR OrthoDB; EOG6DJXX9; -. DR BioCyc; HPY:HP0425-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 417 AA; 47547 MW; 9C5CBAF2632942A6 CRC64; MPKKELLKMS KKRIFKDFLK EAKQHRPIVF YTDNDCDGML AGSVLMSMCY RLGIKDFFFF SPLRNAHGYG FTDLALNDLL SQPCIFNPKT NQLVRLDCIK NQFQKNPLLF SADLGADLAA NTELQEILLE HFEQCIITDH HKSFEVDWID ENKIAYINLN DEKDANYYSG AFTSALVFSQ IFQTQTTPLE EELIAITLLS DRIDLDHGDN LDMVLSLAQA KHERIKCFFK DKDLSLAQDD LDEISNLYGF NCINYINALS RLSGAREFKG CYDSYLHYLV LKHFNPINDP RLSVFNVKEF KRYNDIKKKM VKESEENAQI FPCNKILVAL LDESCSTKVG VSGLVANNFL KKYPSNRSLC IYRDNKDGYS GSARGGGNFL SQIKTIPLIQ AGGHEEAFGL SFAKEDFKKV IKSLQAL // ID O25691_HELPY Unreviewed; 140 AA. AC O25691; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08097.1}; GN OrderedLocusNames=HP_1051 {ECO:0000313|EMBL:AAD08097.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08097.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08097.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08097.1; -; Genomic_DNA. DR PIR; C64651; C64651. DR RefSeq; NP_207842.1; NC_000915.1. DR RefSeq; WP_010875586.1; NC_000915.1. DR ProteinModelPortal; O25691; -. DR DIP; DIP-3635N; -. DR IntAct; O25691; 2. DR MINT; MINT-166786; -. DR STRING; 85962.HP1051; -. DR PaxDb; O25691; -. DR PRIDE; O25691; -. DR DNASU; 899586; -. DR EnsemblBacteria; AAD08097; AAD08097; HP_1051. DR GeneID; 899586; -. DR KEGG; hpy:HP1051; -. DR PATRIC; 20593439; VBIHelPyl33062_1100. DR eggNOG; COG1214; LUCA. DR OMA; TSLKLTH; -. DR OrthoDB; EOG6KHG0F; -. DR BioCyc; HPY:HP1051-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 140 AA; 16061 MW; CD1AB06F500E4D79 CRC64; MYQNNFLCAS YTSKSKTSEA LVEVFSQLFK DFKNPTLPAI KGVYYAKGPG SFTSLKLTHV FLHTLALIHD FELYSTIGFD FNDNTPILAY ANKYFVSKEM ESLSDFKDLK IAPKDFMLPP FLEKDKFTQL NTPFYILPPI // ID O25031_HELPY Unreviewed; 179 AA. AC O25031; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07322.1}; GN OrderedLocusNames=HP_0249 {ECO:0000313|EMBL:AAD07322.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07322.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07322.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07322.1; -; Genomic_DNA. DR PIR; A64551; A64551. DR RefSeq; NP_207047.1; NC_000915.1. DR RefSeq; WP_000157404.1; NC_018939.1. DR ProteinModelPortal; O25031; -. DR DIP; DIP-3300N; -. DR IntAct; O25031; 19. DR MINT; MINT-162232; -. DR STRING; 85962.HP0249; -. DR PaxDb; O25031; -. DR EnsemblBacteria; AAD07322; AAD07322; HP_0249. DR GeneID; 900121; -. DR KEGG; heo:C694_01260; -. DR KEGG; hpy:HP0249; -. DR PATRIC; 20591723; VBIHelPyl33062_0260. DR OMA; IYPIETR; -. DR OrthoDB; EOG67HJVP; -. DR BioCyc; HPY:HP0249-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR013417; CHP02588. DR Pfam; PF09624; DUF2393; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 74 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 179 AA; 20366 MW; 5F05702FCFD43B66 CRC64; MASLAFIQAF LESFKGFLSQ ATLISVLIAS VLILFCAILL LLALLLRNRL ASYIATAAFL GAFLSMPFVL NILLTQAIYP IETRILHANP LSYSNAFSLQ VGVKNHSKFT LNKCVLRLEV LKNPHNFVEE HAFKWFVKKS YEKIFKEKIL PKESKVFSFF IDNYPYSKTA PYQVSLFCL // ID O25339_HELPY Unreviewed; 120 AA. AC O25339; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07689.1}; GN OrderedLocusNames=HP_0622 {ECO:0000313|EMBL:AAD07689.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07689.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07689.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07689.1; -; Genomic_DNA. DR PIR; F64597; F64597. DR RefSeq; NP_207416.1; NC_000915.1. DR RefSeq; WP_000501484.1; NC_018939.1. DR ProteinModelPortal; O25339; -. DR STRING; 85962.HP0622; -. DR PaxDb; O25339; -. DR EnsemblBacteria; AAD07689; AAD07689; HP_0622. DR GeneID; 899293; -. DR KEGG; heo:C694_03220; -. DR KEGG; hpy:HP0622; -. DR PATRIC; 20592527; VBIHelPyl33062_0652. DR eggNOG; ENOG41069EC; Bacteria. DR eggNOG; ENOG410XY67; LUCA. DR OMA; GETLLCK; -. DR OrthoDB; EOG68SW1W; -. DR BioCyc; HPY:HP0622-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 48 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 120 AA; 13281 MW; 8C379862A717BB35 CRC64; MGAVVVLFLT LVLLFLVLRD FGLASPKQKI LAFLIVGIIG ASISVYTYKQ NQQNQQEIAL QRAFLRGETL LCKGIKVNNQ TFNLVSGTLS FLGKKQTPMK DVLVDLDSCQ TLQKDPLIQP // ID O25487_HELPY Unreviewed; 787 AA. AC O25487; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Iron(III) dicitrate transport protein (FecA) {ECO:0000313|EMBL:AAD07854.1}; GN OrderedLocusNames=HP_0807 {ECO:0000313|EMBL:AAD07854.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07854.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07854.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell outer membrane CC {ECO:0000256|RuleBase:RU003357}. CC -!- SIMILARITY: Belongs to the TonB-dependent receptor family. CC {ECO:0000256|RuleBase:RU003357}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07854.1; -; Genomic_DNA. DR PIR; G64620; G64620. DR RefSeq; NP_207600.1; NC_000915.1. DR RefSeq; WP_010875548.1; NC_000915.1. DR ProteinModelPortal; O25487; -. DR DIP; DIP-3263N; -. DR IntAct; O25487; 1. DR MINT; MINT-178590; -. DR STRING; 85962.HP0807; -. DR PaxDb; O25487; -. DR PRIDE; O25487; -. DR EnsemblBacteria; AAD07854; AAD07854; HP_0807. DR GeneID; 898746; -. DR KEGG; hpy:HP0807; -. DR PATRIC; 20592901; VBIHelPyl33062_0839. DR eggNOG; ENOG4108ENF; Bacteria. DR eggNOG; COG4772; LUCA. DR KO; K16091; -. DR OMA; QYGPNTF; -. DR OrthoDB; EOG6G7QZW; -. DR BioCyc; HPY:HP0807-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR Gene3D; 2.40.170.20; -; 3. DR InterPro; IPR012910; Plug_dom. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF07715; Plug; 1. DR Pfam; PF00593; TonB_dep_Rec; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU003357}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}; KW TonB box {ECO:0000256|RuleBase:RU003357}. FT SIGNAL 1 29 {ECO:0000256|SAM:SignalP}. FT CHAIN 30 787 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157744. FT DOMAIN 59 173 Plug. {ECO:0000259|Pfam:PF07715}. FT DOMAIN 525 767 TonB_dep_Rec. {ECO:0000259|Pfam:PF00593}. SQ SEQUENCE 787 AA; 88946 MW; 3DFEC3B2335AD908 CRC64; MNGYLRVKTS YFLALNALTF LSFNSLVGAK EQHHTLQKVT TTEQKFNPSA PLSWQSEEMR NSTSSRTVIS NKELKKTGNL NIENALQNVP GIQIRDATGT GVLPKISVRG FGGGGNGHSN TNMILVNGIP IYGAPYSNIE LAIFPVTFQS VDRIDVIKGG TSVQYGPNTF GGVVNIITKE IPKEWENQAA ERITFWGRSS NGNFVDPKEK GKPLAQTLGN QMLFNTYGRT AGMLGKHVGI SAQGNWINGQ GFRQNSPTKV QNYLLDAVYK INATNTFKAY YQYYQYNSYH PGTLSAQDYA YNRFINERPD NQDGGRAKRF GIVYQNYFGD PDRKVGGDFK FTYFTHDMSR DFGFSNQYQS VYMSSQNKIL PFKGKGKISA TNPNCGLYSY SDTNSPCWQF FDNIRRSVVN AFEPKLNLIV NTGKVKQTFN MGMRFLTEDL YRRSTTRKNP SMPNNGSGFD AGTSLNNFNN YTAVYASDEI NFNNGMLTIT PGLRYTFLNY EKKDAPPFKA GQTGKTIKDR YNQWNPAVNV GYKPIKELLF YFNYQRSYIP PQFSNIGSFV GTSTDYFQIF NVMEGGSRYY FNNQVSFNAN YFVIFANNYF TGRYGDNKEP VNARSQGVEL ELYYTPIRGL NFHAAYTFID ANITSHTMVT NPANPKGPKK DIFGKKLPFV SPHQFILDAS YTYAKTTIGL SSFFYSRTYS DVLNTVPFIQ YAPTIKNGAI TTKTAGMTPW YWVWNLQIST TFWERKKQSV NASLQINNIF NMKYWFSGIG TSLTGKKPRL LGASQRM // ID O25084_HELPY Unreviewed; 39 AA. AC O25084; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07386.1}; GN OrderedLocusNames=HP_0314 {ECO:0000313|EMBL:AAD07386.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07386.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07386.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07386.1; -; Genomic_DNA. DR PIR; B64559; B64559. DR ProteinModelPortal; O25084; -. DR PaxDb; O25084; -. DR PRIDE; O25084; -. DR EnsemblBacteria; AAD07386; AAD07386; HP_0314. DR BioCyc; HPY:HP0314-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 39 AA; 4770 MW; EF757CA55BEA42A5 CRC64; MRLLHFFLSV MGSFHKTARY DCLVLLKKRC FPLYKCQKF // ID O25234_HELPY Unreviewed; 278 AA. AC O25234; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 93. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07568.1}; GN OrderedLocusNames=HP_0492 {ECO:0000313|EMBL:AAD07568.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07568.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07568.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2I9I} RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 36-278. RA Bonanno J.B., Dickey M., Bain K.T., Mckenzie C., Ozyurt S., RA Wasserman S., Sauder J.M., Burley S.K., Almo S.C.; RT "Crystal Structure of Helicobacter pylori hypothetical protein RT O25234."; RL Submitted (SEP-2006) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07568.1; -; Genomic_DNA. DR PIR; D64581; D64581. DR RefSeq; NP_207289.1; NC_000915.1. DR RefSeq; WP_000442290.1; NC_018939.1. DR PDB; 2I9I; X-ray; 1.80 A; A=36-278. DR PDBsum; 2I9I; -. DR ProteinModelPortal; O25234; -. DR SMR; O25234; 51-271. DR DIP; DIP-3500N; -. DR IntAct; O25234; 2. DR MINT; MINT-185392; -. DR STRING; 85962.HP0492; -. DR PaxDb; O25234; -. DR DNASU; 899256; -. DR EnsemblBacteria; AAD07568; AAD07568; HP_0492. DR GeneID; 899256; -. DR KEGG; heo:C694_02530; -. DR KEGG; hpy:HP0492; -. DR PATRIC; 20592259; VBIHelPyl33062_0518. DR KO; K15846; -. DR OMA; TIFEKRG; -. DR OrthoDB; EOG68Q0N7; -. DR BioCyc; HPY:HP0492-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:InterPro. DR InterPro; IPR007876; NeuraminylLac-bd_hemagglutn. DR Pfam; PF05211; NLBH; 1. DR PIRSF; PIRSF019714; Neuraminyllac-bd_haemagglutn; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2I9I}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 30 {ECO:0000256|SAM:SignalP}. FT CHAIN 31 278 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157722. SQ SEQUENCE 278 AA; 31948 MW; 32F8F72010FC20E4 CRC64; MERSLIFKKV RIYSKMLVAL GLSSVLIGCA MNPSAETKTP NDAKNQVQTH ERMKTSSEHV TPLDFNYPIH IVQAPQNHHV VGILTPRIQV SDNLKPYIDK FQDALINQIQ TIFEKRGYQV LRFQDEKALN AQDKRKIFSV LDLKGWVGIL EDLKMNLKDP NNPNLDTLVD QSSGSVWFNF YEPESNRVVH DFAVEVGTFQ AMTYTYKHNN SGGLNSSNSI IHEYLEKNKE DAIHKILNRM YAVVMKKAVT ELTKENIDKY REAIDRMKGF KSSMPQKK // ID O25848_HELPY Unreviewed; 154 AA. AC O25848; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Conserved hypothetical mitochondrial protein 4 {ECO:0000313|EMBL:AAD08304.1}; GN OrderedLocusNames=HP_1258 {ECO:0000313|EMBL:AAD08304.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08304.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08304.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08304.1; -; Genomic_DNA. DR PIR; B64677; B64677. DR RefSeq; NP_208050.1; NC_000915.1. DR RefSeq; WP_000201774.1; NC_018939.1. DR ProteinModelPortal; O25848; -. DR IntAct; O25848; 1. DR STRING; 85962.HP1258; -. DR PaxDb; O25848; -. DR EnsemblBacteria; AAD08304; AAD08304; HP_1258. DR GeneID; 898798; -. DR KEGG; heo:C694_06500; -. DR KEGG; hpy:HP1258; -. DR PATRIC; 20593893; VBIHelPyl33062_1317. DR eggNOG; ENOG4105ZB8; Bacteria. DR eggNOG; COG1714; LUCA. DR OMA; APFIFKF; -. DR OrthoDB; EOG67T5KT; -. DR BioCyc; HPY:HP1258-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR010432; RDD. DR Pfam; PF06271; RDD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 54 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 85 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 134 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 30 138 RDD. {ECO:0000259|Pfam:PF06271}. SQ SEQUENCE 154 AA; 17843 MW; 49D1BA54D9119E39 CRC64; MATKKTKKNK TPKKKQALES PLKGLYLSLR LKAFITDIFM IYTPMLYIMT YAILGSAKDF RENQSAIFLC LLFYALTHSF FIAFKSQSPG MRYARFKLIK NNGEKVGFFL ALWRFVLWVL SMGLLIGFVT PFIFKFFLHD KLSGTHIETI KEAT // ID O24947_HELPY Unreviewed; 449 AA. AC O24947; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (Dhs1) {ECO:0000313|EMBL:AAD07204.1}; GN OrderedLocusNames=HP_0134 {ECO:0000313|EMBL:AAD07204.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07204.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07204.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07204.1; -; Genomic_DNA. DR PIR; F64536; F64536. DR RefSeq; NP_206934.1; NC_000915.1. DR RefSeq; WP_000072772.1; NC_018939.1. DR ProteinModelPortal; O24947; -. DR DIP; DIP-3199N; -. DR IntAct; O24947; 3. DR MINT; MINT-167126; -. DR STRING; 85962.HP0134; -. DR PaxDb; O24947; -. DR EnsemblBacteria; AAD07204; AAD07204; HP_0134. DR GeneID; 900153; -. DR KEGG; heo:C694_00660; -. DR KEGG; hpy:HP0134; -. DR PATRIC; 20591485; VBIHelPyl33062_0142. DR eggNOG; ENOG4105C7V; Bacteria. DR eggNOG; COG3200; LUCA. DR KO; K01626; -. DR OMA; HFEMTGQ; -. DR OrthoDB; EOG6H1Q0Q; -. DR BioCyc; HPY:HP0134-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003849; F:3-deoxy-7-phosphoheptulonate synthase activity; IEA:InterPro. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:InterPro. DR InterPro; IPR002480; DAHP_synth_2. DR PANTHER; PTHR21337; PTHR21337; 1. DR Pfam; PF01474; DAHP_synth_2; 1. DR TIGRFAMs; TIGR01358; DAHP_synth_II; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 449 AA; 50818 MW; 78B77A9528054319 CRC64; MSNTTWSPTS WHSFKIEQHP TYKDKQELER VKKELHSYPP LVFAGEARNL QERLAQVIDN KAFLLQGGDC AESFSQFSAN RIRDMFKVMM QMAIVLTFAG SIPIVKVGRI AGQFAKPRSN ATEMLDNEEV LSYRGDIING ISKKEREPNP ERMLKAYHQS VATLNLIRAF AQGGLADLEQ VHRFNLDFVK NNDFGQKYQQ IADRITQALG FMRACGVEIE RTPILREVEF YTSHEALLLH YEEPLVRKDS LTNQFYDCSA HMLWIGERTR DPKGAHVEFL RGVCNPIGVK IGPNASVSEV LELCDVLNPR NIKGRLNLIV RMGSKMIKER LPKLLQGVLE EKRHILWSID PMHGNTVKTS LGVKTRAFDS VLDEVKSFFE IHRAEGSLAS GVHLEMTGEN VTECIGGSQA ITEEGLSCHY YTQCDPRLNA TQALELAFLI ADMLKKQHA // ID O25524_HELPY Unreviewed; 533 AA. AC O25524; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 110. DE SubName: Full=ABC transporter, ATP-binding protein (YheS) {ECO:0000313|EMBL:AAD07900.1}; GN OrderedLocusNames=HP_0853 {ECO:0000313|EMBL:AAD07900.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07900.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07900.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07900.1; -; Genomic_DNA. DR PIR; E64626; E64626. DR RefSeq; NP_207647.1; NC_000915.1. DR RefSeq; WP_000942070.1; NC_018939.1. DR ProteinModelPortal; O25524; -. DR DIP; DIP-3234N; -. DR IntAct; O25524; 1. DR MINT; MINT-163732; -. DR STRING; 85962.HP0853; -. DR PaxDb; O25524; -. DR EnsemblBacteria; AAD07900; AAD07900; HP_0853. DR GeneID; 899382; -. DR KEGG; heo:C694_04370; -. DR KEGG; hpy:HP0853; -. DR PATRIC; 20592995; VBIHelPyl33062_0885. DR eggNOG; ENOG4105C5H; Bacteria. DR eggNOG; COG0488; LUCA. DR OMA; WSENAKI; -. DR OrthoDB; EOG6F297F; -. DR BioCyc; HPY:HP0853-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 3. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR032781; ABC_tran_Xtn. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 2. DR Pfam; PF12848; ABC_tran_Xtn; 1. DR SMART; SM00382; AAA; 2. DR SUPFAM; SSF52540; SSF52540; 2. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD07900.1}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD07900.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 254 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. FT DOMAIN 322 531 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. FT COILED 245 270 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 533 AA; 59932 MW; 935660B7071C540A CRC64; MLQTINLTQR YATKKLFENV NIKLDKNKRY GLIGANGAGK STFLKILSKS IDCSSGEVII TSGMKMGVLG QDQYAFEDLS LKDAVLIGNK RLYDAIKEKE RLYTEGDLSD DKVNARLGEL ETICVEEDPM YECEVAIEKI LEDLGIPSSK HNDLMKTLPS SDKFKILLAQ VLFPKPDILL LDEPTNNLDL NAIEWLENNL KRHEGTMVVI SHDRHFLNAV CTHILDLDFH SVREFSGNYD DWYIASTLIA KQQEAERNKK LKEKEELEKF IARFSANASK AKQATSRQKQ LDKLDIQSLA VSSRRDPSII FKPKRTIGNE ALECENISKS YDDQIVLNQV SLKVMPKDKI ALIGPNGVGK STLCKILVEE LKPDKGVVKW GATVSKGYFP QNVSEEISGE ETLYQWLFNF NKKIESAEVR NALGRMLFNG EEQEKCVNAL SGGEKHRMVL SKLMLEGGNF LVLDEPTNHL DLEAIIALGE ALFKFDGALI CVSHDRELID AYANRIIELV PSPKGASIID FKGSYEEYLA SKK // ID O25765_HELPY Unreviewed; 169 AA. AC O25765; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08201.1}; GN OrderedLocusNames=HP_1146 {ECO:0000313|EMBL:AAD08201.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08201.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08201.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08201.1; -; Genomic_DNA. DR PIR; B64663; B64663. DR RefSeq; WP_010875599.1; NC_018939.1. DR ProteinModelPortal; O25765; -. DR STRING; 85962.HP1146; -. DR PaxDb; O25765; -. DR PRIDE; O25765; -. DR EnsemblBacteria; AAD08201; AAD08201; HP_1146. DR PATRIC; 20593643; VBIHelPyl33062_1200. DR eggNOG; COG1432; LUCA. DR OMA; MEKIETT; -. DR OrthoDB; EOG6RVFVX; -. DR BioCyc; HPY:HP1146-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 169 AA; 20228 MW; 5DFD837F6F20F540 CRC64; MRTEPLFYFK KQGMFKSPCY TYGKIHILGE SMEKTETTIF VDWENLLADL KAIQETDERL KEPNFNFNNP EQLLVLIRSF LEPEEELKRI YFYVSEPFTE VEPRIKGNKN EELEEYKEKN PKDYEERVNK SGIIQSFNHN IAQQNQVKLR VGRVMFKFTN ESEDKEVLI // ID O24899_HELPY Unreviewed; 284 AA. AC O24899; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07136.1}; GN OrderedLocusNames=HP_0059 {ECO:0000313|EMBL:AAD07136.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07136.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07136.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07136.1; -; Genomic_DNA. DR PIR; C64527; C64527. DR RefSeq; NP_206859.1; NC_000915.1. DR RefSeq; WP_000536434.1; NC_018939.1. DR ProteinModelPortal; O24899; -. DR STRING; 85962.HP0059; -. DR PaxDb; O24899; -. DR EnsemblBacteria; AAD07136; AAD07136; HP_0059. DR GeneID; 900260; -. DR KEGG; heo:C694_00280; -. DR KEGG; hpy:HP0059; -. DR PATRIC; 20591319; VBIHelPyl33062_0061. DR OMA; RREQQEM; -. DR OrthoDB; EOG6SJJMS; -. DR BioCyc; HPY:HP0059-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 39 234 {ECO:0000256|SAM:Coils}. FT COILED 246 277 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 284 AA; 32724 MW; 7E52BF92E5944128 CRC64; MGTFIEKCFG FYQVRKELEA RISGLEDENA ELFAENEKLA LGTSELKDAN NQLRQKNDKL FTTKENLTQE KTELTEKNKV LTTEKGNLDN QLNASQKQVQ ALEQSQQVLE NEKVELTNKI TDLSKEKENL TKANTELKTE NDKLNHQVIA LTKEQDSLKQ ERAQLQDAHG FLEELCANLE KDNQHLTDKL KKLESAQKNL ENSNDQLLQA IENIAEEKTE LEREIARLKS LEATDKSELD LQNCRFKSAI EDLKRQNRKL EEENIALKER AYGLKEQPSK QPKP // ID O25507_HELPY Unreviewed; 119 AA. AC O25507; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07893.1}; GN OrderedLocusNames=HP_0836 {ECO:0000313|EMBL:AAD07893.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07893.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07893.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07893.1; -; Genomic_DNA. DR PIR; D64624; D64624. DR ProteinModelPortal; O25507; -. DR DIP; DIP-3491N; -. DR IntAct; O25507; 3. DR MINT; MINT-165148; -. DR STRING; 85962.HP0836; -. DR PaxDb; O25507; -. DR PRIDE; O25507; -. DR EnsemblBacteria; AAD07893; AAD07893; HP_0836. DR PATRIC; 20592965; VBIHelPyl33062_0870. DR eggNOG; COG3018; LUCA. DR OrthoDB; EOG6DJZ3R; -. DR BioCyc; HPY:HP0836-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 119 AA; 13211 MW; A0FE8925EEB56795 CRC64; MPMRLHTAFF GINSLLVASL LISGCSLFKK RNTNAQLIPP SANGLQAPIY PPTNFTPRKS IQPLPSPRLE NNDQPVISSN PTNAIPNTPI LTPNNVIELN AWAWAWLQNP PFHPLKPWL // ID O25947_HELPY Unreviewed; 271 AA. AC O25947; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08442.1}; GN OrderedLocusNames=HP_1397 {ECO:0000313|EMBL:AAD08442.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08442.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08442.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08442.1; -; Genomic_DNA. DR PIR; E64694; E64694. DR ProteinModelPortal; O25947; -. DR IntAct; O25947; 4. DR STRING; 85962.HP1397; -. DR PaxDb; O25947; -. DR DNASU; 899899; -. DR EnsemblBacteria; AAD08442; AAD08442; HP_1397. DR KEGG; heo:C694_07220; -. DR PATRIC; 20594183; VBIHelPyl33062_1462. DR eggNOG; ENOG4105DPE; Bacteria. DR eggNOG; COG1479; LUCA. DR OMA; NAFITWL; -. DR OrthoDB; EOG6JHRG3; -. DR BioCyc; HPY:HP1397-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004919; DUF262. DR Pfam; PF03235; DUF262; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 13 226 DUF262. {ECO:0000259|Pfam:PF03235}. SQ SEQUENCE 271 AA; 31833 MW; 8C639D99FB6281A0 CRC64; MAKIESNDSH LRGILKDELY YQIPIYQRPY QWTEENCEKL LDDLFFNYED DREGDYFCGS LVLIAISKDS KATTYDVVDG QQRLSTFILL AKVLADLYND CLDPKNLEHL QEGWKDRHTE RKRLSFNTIG SNAEYDFQDA LEHFNDSQAS KNKNNKNNYL KNAICLKDYL MKKEIKNIND FIEWLYSNVK FITIICPNID KALRIFNVLN ARGLPLNATD IFKGELLKHA KEHEREEFVS RWNALSQKCS DNDLTMETLF SWYNLSQSGN F // ID O26072_HELPY Unreviewed; 112 AA. AC O26072; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08586.1}; GN OrderedLocusNames=HP_1548 {ECO:0000313|EMBL:AAD08586.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08586.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08586.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08586.1; -; Genomic_DNA. DR PIR; D64713; D64713. DR RefSeq; NP_208339.1; NC_000915.1. DR RefSeq; WP_000383778.1; NC_018939.1. DR ProteinModelPortal; O26072; -. DR STRING; 85962.HP1548; -. DR PaxDb; O26072; -. DR EnsemblBacteria; AAD08586; AAD08586; HP_1548. DR GeneID; 899743; -. DR KEGG; heo:C694_08020; -. DR KEGG; hpy:HP1548; -. DR PATRIC; 20594519; VBIHelPyl33062_1627. DR OMA; KVIYIFF; -. DR OrthoDB; EOG6MWNDH; -. DR BioCyc; HPY:HP1548-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 49 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 77 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 103 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 112 AA; 12226 MW; 11181E71B6B3B5BC CRC64; MDWGRVVHVL FSLISLTTIA GFLYEPNTVV LFVALALNLI SVTLKIGVIK RFASELLASS LATVLHLIPA FVFLQILNNL VTAYMLMIGA LISNAFSLIF LLIESVVTSE TD // ID O24928_HELPY Unreviewed; 259 AA. AC O24928; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07172.1}; GN OrderedLocusNames=HP_0102 {ECO:0000313|EMBL:AAD07172.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07172.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07172.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07172.1; -; Genomic_DNA. DR PIR; F64532; F64532. DR RefSeq; NP_206902.1; NC_000915.1. DR RefSeq; WP_000922020.1; NC_000915.1. DR ProteinModelPortal; O24928; -. DR DIP; DIP-3745N; -. DR IntAct; O24928; 1. DR MINT; MINT-183793; -. DR STRING; 85962.HP0102; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR PaxDb; O24928; -. DR PRIDE; O24928; -. DR EnsemblBacteria; AAD07172; AAD07172; HP_0102. DR GeneID; 898929; -. DR KEGG; hpy:HP0102; -. DR PATRIC; 20591415; VBIHelPyl33062_0107. DR eggNOG; ENOG4105K64; Bacteria. DR eggNOG; COG0463; LUCA. DR OMA; SADFEMI; -. DR OrthoDB; EOG60KN22; -. DR BioCyc; HPY:HP0102-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR001173; Glyco_trans_2-like. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00535; Glycos_transf_2; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 130 Glyco_trans_2-like. FT {ECO:0000259|Pfam:PF00535}. SQ SEQUENCE 259 AA; 29653 MW; 195A1C5EA1D05180 CRC64; MLKVSVITAC FNSEKTIEDT ILSVLHQTYK NIEYIIIDGA STDSTLEIIQ KHRDKIACVM SEKDEGIYDA MNKGIKRSSG DIIALLNSDD FYKDEFVVEK VVHEFERKNC DSVYADLVFV KPDCLEKVVR YYEIGEFNPK TLLYGVVPAH PTLFVKKAIY ERYGLYKTDY KISADFEMII RLFVVQKISF SYLKEVLVVM RTGGVSASGF KSLLLRNKEN IRACKENGIQ ANVFSMLLKY PRKIMGLFKR GKGGLKRND // ID O24883_HELPY Unreviewed; 233 AA. AC O24883; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=TrbI protein {ECO:0000313|EMBL:AAD07110.1}; GN OrderedLocusNames=HP_0042 {ECO:0000313|EMBL:AAD07110.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07110.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07110.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2BHV} RP X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS). RX PubMed=15764702; DOI=10.1073/pnas.0408927102; RA Terradot L., Bayliss R., Oomen C., Leonard G.A., Baron C., Waksman G.; RT "Structures of two core subunits of the bacterial type IV secretion RT system, VirB8 from Brucella suis and ComB10 from Helicobacter RT pylori."; RL Proc. Natl. Acad. Sci. U.S.A. 102:4596-4601(2005). CC -!- INTERACTION: CC O24862:HP_0017; NbExp=2; IntAct=EBI-528018, EBI-528030; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07110.1; -; Genomic_DNA. DR PIR; B64525; B64525. DR PDB; 2BHV; X-ray; 3.00 A; A/B/C/D/E/F=1-233. DR PDBsum; 2BHV; -. DR ProteinModelPortal; O24883; -. DR SMR; O24883; 23-233. DR DIP; DIP-3109N; -. DR IntAct; O24883; 15. DR MINT; MINT-159828; -. DR STRING; 85962.HP0042; -. DR PaxDb; O24883; -. DR PRIDE; O24883; -. DR EnsemblBacteria; AAD07110; AAD07110; HP_0042. DR PATRIC; 20591283; VBIHelPyl33062_0043. DR eggNOG; ENOG4105CMA; Bacteria. DR eggNOG; COG2948; LUCA. DR OMA; TPHGINI; -. DR OrthoDB; EOG6VHZ7H; -. DR BioCyc; HPY:HP0042-MONOMER; -. DR EvolutionaryTrace; O24883; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005498; T4SS_VirB10/TraB/TrbI. DR Pfam; PF03743; TrbI; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2BHV}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 233 AA; 25796 MW; 389EBDE2F238413C CRC64; MDNPKGIDGF TNLKEKDIAT NENKLLRTIT ADKMIPAFLI TPISSQIAGK VIAQVESDIF AHMGKAVLIP KGSKVIGYYS NNNKMGEYRL DIVWSRIITP HGINIMLTNA KGADIKGYNG LVGELIERNF QRYGVPLLLS TLTNGLLIGI TSALNNRGNK EGATNFFGDY LLMQLMRQSG MGINQVVNQI LRDKSKIAPI VVIREGSRVF ISPNTDIFFP IPRENEVIAE FLK // ID O25078_HELPY Unreviewed; 134 AA. AC O25078; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07383.1}; GN OrderedLocusNames=HP_0308 {ECO:0000313|EMBL:AAD07383.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07383.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07383.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07383.1; -; Genomic_DNA. DR PIR; D64558; D64558. DR RefSeq; NP_207106.1; NC_000915.1. DR RefSeq; WP_000336506.1; NC_018939.1. DR ProteinModelPortal; O25078; -. DR STRING; 85962.HP0308; -. DR PaxDb; O25078; -. DR EnsemblBacteria; AAD07383; AAD07383; HP_0308. DR GeneID; 900106; -. DR KEGG; heo:C694_01555; -. DR KEGG; hpy:HP0308; -. DR PATRIC; 20591843; VBIHelPyl33062_0319. DR OMA; CQIQCLL; -. DR OrthoDB; EOG6CGCHR; -. DR BioCyc; HPY:HP0308-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 51 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 109 128 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 134 AA; 15130 MW; B27D8406F998BB75 CRC64; MCQIQCLLIL LSINIVSAII VYFFQAFQGV LNFEGGFLGF FIVALSSYYG VKKRLDLRKQ NSIEKEEKQK FQKFALGLEM SFNVWRLGGY GVLLGILGTL LFLHLFNGLI FLIGVFVSSL SSALLRFLNN NGKF // ID O25763_HELPY Unreviewed; 85 AA. AC O25763; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08190.1}; GN OrderedLocusNames=HP_1144 {ECO:0000313|EMBL:AAD08190.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08190.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08190.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08190.1; -; Genomic_DNA. DR PIR; H64662; H64662. DR ProteinModelPortal; O25763; -. DR STRING; 85962.HP1144; -. DR PaxDb; O25763; -. DR PRIDE; O25763; -. DR EnsemblBacteria; AAD08190; AAD08190; HP_1144. DR OMA; NNTMERS; -. DR OrthoDB; EOG6NPMB5; -. DR BioCyc; HPY:HP1144-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 85 AA; 9377 MW; B7F2809D21504F53 CRC64; MGRSLALALQ KASISRFASV HRAPLINHFL EQVILQSPSD ENKNIKTIAF GGVIKLNPHN RNPLLKPYSA FIALSCTQFH YSACA // ID O25089_HELPY Unreviewed; 505 AA. AC O25089; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Poly E-rich protein {ECO:0000313|EMBL:AAD07390.1}; GN OrderedLocusNames=HP_0322 {ECO:0000313|EMBL:AAD07390.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07390.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07390.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07390.1; -; Genomic_DNA. DR PIR; B64560; B64560. DR RefSeq; NP_207120.1; NC_000915.1. DR RefSeq; WP_000782061.1; NC_018939.1. DR ProteinModelPortal; O25089; -. DR IntAct; O25089; 1. DR STRING; 85962.HP0322; -. DR PaxDb; O25089; -. DR EnsemblBacteria; AAD07390; AAD07390; HP_0322. DR GeneID; 899206; -. DR KEGG; heo:C694_01630; -. DR KEGG; hpy:HP0322; -. DR PATRIC; 20591875; VBIHelPyl33062_0335. DR OMA; QDVETPQ; -. DR OrthoDB; EOG654P19; -. DR BioCyc; HPY:HP0322-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 165 200 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 505 AA; 58469 MW; B7633BA416820C70 CRC64; MKMILFNQNP MITKLLESVS KKLELPIENF NHYQELSARL KENQEWLLIA DDECLEKLDQ VDWLELKETI SQNKNSVCMY KKGNEAQPFL EGFEVKIKKP FLPTEMLKVL QKKLGSNASE LEPSQNLDPT QEVLETNWDE LENLGDLEAL VQEEPNNEEQ LLPTLNDQEE KEEVKEEEKE EVKEEEKEEV KEEEKEEVKE TPQEEKKPKD DETQEGETLK DKEVSKELEA PQELEIPKEE TQEQDPIKEE TQENKEEKQE KTQDSPSAQE LEAMQELVKE IQENSNGQEN KEKTQESAEI PQDKEIQEVV TEKTQAQELE VPKEKTQESA EALQETQAHE LEKQEIAETP QDVEIPQSQD KEVQELEIPK EETQENTETP QDVETPQEKE TQEDHYESIE DIPEPVMAKA MGEELPFLNE AVAKIPNNEN DTETPKESVT ETSKNENNTE TPQEKEESDK TSSPLELRLN LQDLLKSLNQ ESLKSLLENK TLSIKITLED KKPNA // ID O25816_HELPY Unreviewed; 159 AA. AC O25816; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08266.1}; GN OrderedLocusNames=HP_1217 {ECO:0000313|EMBL:AAD08266.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08266.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08266.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08266.1; -; Genomic_DNA. DR PIR; A64672; A64672. DR RefSeq; NP_208009.1; NC_000915.1. DR RefSeq; WP_000556006.1; NC_018939.1. DR ProteinModelPortal; O25816; -. DR STRING; 85962.HP1217; -. DR PaxDb; O25816; -. DR EnsemblBacteria; AAD08266; AAD08266; HP_1217. DR GeneID; 899051; -. DR KEGG; heo:C694_06290; -. DR KEGG; hpy:HP1217; -. DR PATRIC; 20593807; VBIHelPyl33062_1274. DR eggNOG; COG1714; LUCA. DR OMA; ANPIYHS; -. DR OrthoDB; EOG63NMJK; -. DR BioCyc; HPY:HP1217-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR010432; RDD. DR Pfam; PF06271; RDD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 46 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 139 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 28 149 RDD. {ECO:0000259|Pfam:PF06271}. SQ SEQUENCE 159 AA; 18700 MW; 8C3C413A35D9FE83 CRC64; MHSPNLEKEE TEIIETLLMR EKMRLCPLYW RILAFLTDGL LVAFLLSDLL DACDFLHSLY WLANPIYHSA FVAMGFIILY GVYEIFFVCL CKMSLAKLVF RIKIIDIYLA DCPSRAILLK RLGLKIVVFL CPFLWFVAFK NPYHRAWHEE KSKSLLVLF // ID O25304_HELPY Unreviewed; 324 AA. AC O25304; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07647.1}; GN OrderedLocusNames=HP_0582 {ECO:0000313|EMBL:AAD07647.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07647.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07647.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07647.1; -; Genomic_DNA. DR PIR; F64592; F64592. DR RefSeq; NP_207377.1; NC_000915.1. DR RefSeq; WP_001114818.1; NC_018939.1. DR ProteinModelPortal; O25304; -. DR DIP; DIP-3452N; -. DR IntAct; O25304; 2. DR MINT; MINT-179434; -. DR STRING; 85962.HP0582; -. DR PaxDb; O25304; -. DR EnsemblBacteria; AAD07647; AAD07647; HP_0582. DR GeneID; 899026; -. DR KEGG; heo:C694_03000; -. DR KEGG; hpy:HP0582; -. DR PATRIC; 20592437; VBIHelPyl33062_0607. DR eggNOG; ENOG4105NB1; Bacteria. DR eggNOG; COG0810; LUCA. DR OMA; NHKHKAL; -. DR OrthoDB; EOG6NGVVD; -. DR BioCyc; HPY:HP0582-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR006260; TonB_C. DR Pfam; PF03544; TonB_C; 1. DR TIGRFAMs; TIGR01352; tonB_Cterm; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 44 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 247 320 TonB_C. {ECO:0000259|Pfam:PF03544}. FT COILED 134 177 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 324 AA; 37382 MW; 1FFC4C5380C8DB37 CRC64; MPENSKLQPA KLGKNFDPVD HSNRNFFFSL ILSVLLHWLI YFLFEHREDF FPSKPKLVKL NPENLLVLKR GHSQDPSKNT QGAPKPTLAG PQKPPTPPTP PTPPTPPTPP KPIEKPKPEP KPKPKPEPKK PNHKHKALKK VEKVEEKKVV EEKKEEKKIV EQKVEQKVEQ KKIEEKKPVK KEFDPNQLSF LPKEVAPPRQ ENNKGLDNQT RRDIDELYGE EFGDLGTAEK DFIRNNLRDI GRITQKYLEY PQVAAYLGQD GTNAVEFYLH PNGDITDLKI IIGSEYKMLD DNTLKTIQIA YKDYPRPKTK TLIRIRVRYY LGGN // ID O25215_HELPY Unreviewed; 162 AA. AC O25215; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07531.1}; GN OrderedLocusNames=HP_0469 {ECO:0000313|EMBL:AAD07531.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07531.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07531.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07531.1; -; Genomic_DNA. DR PIR; E64578; E64578. DR RefSeq; NP_207267.1; NC_000915.1. DR RefSeq; WP_001188605.1; NC_018939.1. DR ProteinModelPortal; O25215; -. DR STRING; 85962.HP0469; -. DR PaxDb; O25215; -. DR EnsemblBacteria; AAD07531; AAD07531; HP_0469. DR GeneID; 898898; -. DR KEGG; heo:C694_02405; -. DR KEGG; hpy:HP0469; -. DR PATRIC; 20592209; VBIHelPyl33062_0493. DR eggNOG; ENOG4105Y57; Bacteria. DR eggNOG; ENOG4112CSX; LUCA. DR OMA; VLFNRCD; -. DR OrthoDB; EOG644ZQN; -. DR BioCyc; HPY:HP0469-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 162 AA; 18649 MW; B0487347B0D6D578 CRC64; MQRELRLLNN KHCMEYLQFL SKNHLSFNLL CERDAIDFSP KLPKEIHEKF GALVLFVLAG YTLESLIIDT KSVQFEAGFG PNNIGSVVQV KLPGIIQILI KEKNENAVLF NRCDSLELFQ KEDSIAQEPK KDERESKEWL DSKEALFSNS KNRAILENLH KS // ID O25780_HELPY Unreviewed; 386 AA. AC O25780; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Tetracycline resistance protein tetA(P), putative {ECO:0000313|EMBL:AAD08210.1}; GN OrderedLocusNames=HP_1165 {ECO:0000313|EMBL:AAD08210.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08210.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08210.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08210.1; -; Genomic_DNA. DR PIR; E64665; E64665. DR RefSeq; NP_207956.1; NC_000915.1. DR RefSeq; WP_000944753.1; NC_018939.1. DR ProteinModelPortal; O25780; -. DR DIP; DIP-3142N; -. DR IntAct; O25780; 1. DR MINT; MINT-179841; -. DR STRING; 85962.HP1165; -. DR PaxDb; O25780; -. DR EnsemblBacteria; AAD08210; AAD08210; HP_1165. DR GeneID; 899925; -. DR KEGG; heo:C694_06015; -. DR KEGG; hpy:HP1165; -. DR PATRIC; 20593681; VBIHelPyl33062_1219. DR eggNOG; COG0477; LUCA. DR OMA; WQAYFLK; -. DR OrthoDB; EOG6R5C7Q; -. DR BioCyc; HPY:HP1165-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 89 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 117 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 138 155 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 161 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 215 234 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 246 265 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 274 293 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 299 319 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 331 350 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 356 379 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 386 AA; 43775 MW; 06A53F3DC35B672D CRC64; MLRKNILAYY GANFLLIIAQ SLPHAILTPL LLSKGLSLSE ILLVQTFFSF CVLVAEYPSG VLADLMSRKN LFLVSNAFLI ASFSFVLFFD SFIFMLLAWG LYGLYSACSS GTIEASLITD IKENKKDLSK FLAKNNQITY LGMIIGSSLG SFLYLKVHAM LYIVGIFLIM LCVLTIIFYF KEKEGDFKSQ KSLKLLKEQV KGSLKELKDN PKLKILLVGH LITPVFFMSH FQMWQAYFLK QGVKEQYLFV FYIAFQVISI LIHFLKASSY SQKIALSSLV VLLGVSPLLL SNIPYCFIGV YALMVAFFTY MSYCLNYQFS KFVSKNNISS LSSLLSSCVR VVSVLILSLS SLELRYFSPL TIITMHFALT LIILFFFLYK AKPFDE // ID O24914_HELPY Unreviewed; 457 AA. AC O24914; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07159.1}; GN OrderedLocusNames=HP_0087 {ECO:0000313|EMBL:AAD07159.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07159.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07159.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07159.1; -; Genomic_DNA. DR PIR; G64530; G64530. DR RefSeq; NP_206887.1; NC_000915.1. DR RefSeq; WP_001268661.1; NC_018939.1. DR ProteinModelPortal; O24914; -. DR DIP; DIP-3757N; -. DR IntAct; O24914; 3. DR MINT; MINT-171024; -. DR STRING; 85962.HP0087; -. DR PaxDb; O24914; -. DR EnsemblBacteria; AAD07159; AAD07159; HP_0087. DR GeneID; 900166; -. DR KEGG; heo:C694_00425; -. DR KEGG; hpy:HP0087; -. DR PATRIC; 20591383; VBIHelPyl33062_0092. DR eggNOG; ENOG4105EFF; Bacteria. DR eggNOG; COG0791; LUCA. DR OMA; SHKIGGV; -. DR OrthoDB; EOG6Z6FP1; -. DR BioCyc; HPY:HP0087-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.90.1720.10; -; 1. DR InterPro; IPR000064; NLP_P60_dom. DR InterPro; IPR025606; NLPC/P60_N_dom. DR InterPro; IPR027017; P60_peptidase_YkfC. DR InterPro; IPR026864; SH3b2-type_SH3. DR Pfam; PF12912; N_NLPC_P60; 1. DR Pfam; PF00877; NLPC_P60; 1. DR Pfam; PF12914; SH3_7; 1. DR PIRSF; PIRSF019015; P60_peptidase_YkfC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 18 118 N_NLPC_P60. {ECO:0000259|Pfam:PF12912}. FT DOMAIN 205 243 SH3_7. {ECO:0000259|Pfam:PF12914}. FT DOMAIN 301 436 NLPC_P60. {ECO:0000259|Pfam:PF00877}. SQ SEQUENCE 457 AA; 52340 MW; 61F5936854A87B9C CRC64; MRYFLVVFLF LFVGCTKKDF TLKDLSLPQE ASSYLASSQN GSNNNQSIDP QALRENLKES YLKAWYSPWL DMKVKSNKKE VFWILKEMNK STGYGEDLKP NAKAFNDALI KSMDIEHYPS VKIRAVVARD SDVRAVPTNK PYYLSQKGYP FDRYQNSLIF QGTPVLITHF NLDKTYAHIQ SSFVYGWIKV SDLVYMHDKD IELLTHLKDY VMPIKDKIPL YTDYGDFYTN ARVGELFALI PQSQKTPQKP QKKELKAYGF LRDAKGYAAL QSVILEEKDF FVFPKAFNSE NMAYFIDTML GQKYGWGGLL GNRDCSAFTR DSFANFGILL PRNSYAQSRY ANNYVDLSSM KAKEKEDYIL KNATPFGTLI YLKGHIMLYL GAHNHQAIVA HSIWSVQTQK HFKTLSHKIG GVVITSLWLA EEHNGAFSKK KLLIDRVLGM SDLKDFVNKT SSPLNAN // ID O25523_HELPY Unreviewed; 313 AA. AC O25523; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07913.1}; GN OrderedLocusNames=HP_0852 {ECO:0000313|EMBL:AAD07913.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07913.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07913.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07913.1; -; Genomic_DNA. DR PIR; D64626; D64626. DR RefSeq; NP_207645.1; NC_000915.1. DR RefSeq; WP_000804194.1; NC_018939.1. DR ProteinModelPortal; O25523; -. DR DIP; DIP-3179N; -. DR IntAct; O25523; 2. DR MINT; MINT-170179; -. DR STRING; 85962.HP0852; -. DR PaxDb; O25523; -. DR EnsemblBacteria; AAD07913; AAD07913; HP_0852. DR GeneID; 899381; -. DR KEGG; heo:C694_04365; -. DR KEGG; hpy:HP0852; -. DR PATRIC; 20592993; VBIHelPyl33062_0884. DR eggNOG; ENOG4108MSH; Bacteria. DR eggNOG; COG2958; LUCA. DR KO; K09805; -. DR OMA; KGEIENM; -. DR OrthoDB; EOG6SFPCG; -. DR BioCyc; HPY:HP0852-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 313 AA; 35777 MW; E806EED399C8ADB7 CRC64; MKPQDIEIVQ SVLEITGPIK PTEVYDKAKE LFEKGEITNM FDCGGKTPHQ SVSSYIYTAL NKGEELPFKK VQENPTLIAL KDAAKELGLD AQKISAPSSK IAHERDLHPF LTYMAINNEN LKCYTKTIFH EESSKSIKGM DRWLYPDMVG VRFLHAELSN ENLIAFSKKF DTLPIKLVSF ELKKEISVHN CRECYFQAIS NSSWANEGYL VGRHIDTHNP QLMDLLKRLH ASFGIGVIDL RTNEDKSAIL LNAKYKEKID YTVASELSAK NEKFSGFLKS VVDYDPNHPQ RYKDEFDEVK KKEELYPNPS LSF // ID O25996_HELPY Unreviewed; 104 AA. AC O25996; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=Thioredoxin {ECO:0000313|EMBL:AAD08500.1}; GN OrderedLocusNames=HP_1458 {ECO:0000313|EMBL:AAD08500.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08500.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08500.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08500.1; -; Genomic_DNA. DR PIR; B64702; B64702. DR RefSeq; NP_208249.1; NC_000915.1. DR RefSeq; WP_001293258.1; NC_018939.1. DR ProteinModelPortal; O25996; -. DR DIP; DIP-3185N; -. DR IntAct; O25996; 3. DR MINT; MINT-169998; -. DR STRING; 85962.HP1458; -. DR PaxDb; O25996; -. DR EnsemblBacteria; AAD08500; AAD08500; HP_1458. DR GeneID; 899835; -. DR KEGG; heo:C694_07550; -. DR KEGG; hpy:HP1458; -. DR PATRIC; 20594327; VBIHelPyl33062_1532. DR eggNOG; ENOG4106AR0; Bacteria. DR eggNOG; COG0526; LUCA. DR OMA; EMINGKN; -. DR OrthoDB; EOG6QG8RK; -. DR BioCyc; HPY:HP1458-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR GO; GO:0045454; P:cell redox homeostasis; IEA:InterPro. DR GO; GO:0006662; P:glycerol ether metabolic process; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR005746; Thioredoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR InterPro; IPR013766; Thioredoxin_domain. DR PANTHER; PTHR10438; PTHR10438; 1. DR Pfam; PF00085; Thioredoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 104 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 104 AA; 11745 MW; 29809607F6CEB9C4 CRC64; MSEMINGKNY AEKIAHQAVV VNVGASWCPD CRKIEPIMEN LAKTYKGKVE FFKVSFDESQ DLKESLGIRK IPTLIFYKNA KEVGERLVEP SSQKPIEDAL KALL // ID O24881_HELPY Unreviewed; 247 AA. AC O24881; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07120.1}; GN OrderedLocusNames=HP_0040 {ECO:0000313|EMBL:AAD07120.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07120.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07120.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07120.1; -; Genomic_DNA. DR PIR; H64524; H64524. DR ProteinModelPortal; O24881; -. DR IntAct; O24881; 7. DR STRING; 85962.HP0039m; -. DR PaxDb; O24881; -. DR EnsemblBacteria; AAD07120; AAD07120; HP_0040. DR PATRIC; 20591279; VBIHelPyl33062_0041. DR eggNOG; COG3504; LUCA. DR OrthoDB; EOG6NKQXB; -. DR BioCyc; HPY:HP0040-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR010258; Conjugal_tfr_TrbG/VirB9/CagX. DR Pfam; PF03524; CagX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 247 AA; 28407 MW; 321916248D1EAAE8 CRC64; MATLLFFSKP ISDFVLGDKV GFDAKILESN DRILLIKPLQ IGVDSNISVI DNEGKIFSFY VFSTTFTSSK HPNLQVFIED KNYYSNAFLK PQKENMAENA PKDAPTNNKP LKEEKEETKE KEEETITIGD NTNAMKIVKK DIQKGYKALK SSQRKWYCLG ICSKKSKLSL MPKEIFNDKQ FTYFKFDKRL ALSKFPVIYK VVDGYDNPVN TRIVGDYIIA EDVSAKWTLR LGKDYLCIRF VKKAKDE // ID O25220_HELPY Unreviewed; 224 AA. AC O25220; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 98. DE SubName: Full=Molybdenum ABC transporter, permease protein (ModB) {ECO:0000313|EMBL:AAD07542.1}; GN OrderedLocusNames=HP_0474 {ECO:0000313|EMBL:AAD07542.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07542.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07542.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07542.1; -; Genomic_DNA. DR PIR; B64579; B64579. DR RefSeq; NP_207272.1; NC_000915.1. DR RefSeq; WP_000349469.1; NC_018939.1. DR ProteinModelPortal; O25220; -. DR STRING; 85962.HP0474; -. DR PaxDb; O25220; -. DR EnsemblBacteria; AAD07542; AAD07542; HP_0474. DR GeneID; 899251; -. DR KEGG; heo:C694_02430; -. DR KEGG; hpy:HP0474; -. DR PATRIC; 20592219; VBIHelPyl33062_0498. DR eggNOG; ENOG4105E0C; Bacteria. DR eggNOG; COG4149; LUCA. DR KO; K02018; -. DR OMA; NYSKAHQ; -. DR OrthoDB; EOG6R2H32; -. DR BioCyc; HPY:HP0474-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015098; F:molybdate ion transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR011867; ModB_ABC. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR02141; modB_ABC; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 12 36 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 48 68 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 88 106 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 198 216 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 9 213 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 224 AA; 24744 MW; 3FDBD0B3E26F62EE CRC64; MDHEFLITMR LSFSLALITT LILLPVGIFL GYFLSLKRNL LTSLTETLVY MPLVLPPSVL GFYLLLIFSP SSFLGAFLQD VLNVKLVFSF QGLILGSVIF SLPFMVSPIK SALISLPASL KEASYSLGKG EYYTLFFVLL PNIKPSLLMA IITTFTHTIG EFGVVMMLGG DILGETRVAS IAIFNEAEAL NYSKAHQYAL TLTLISFSLL FVTLFLNKKQ SSFL // ID O25580_HELPY Unreviewed; 369 AA. AC O25580; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Outer membrane protein (Omp22) {ECO:0000313|EMBL:AAD07978.1}; GN OrderedLocusNames=HP_0923 {ECO:0000313|EMBL:AAD07978.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07978.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07978.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07978.1; -; Genomic_DNA. DR PIR; C64635; C64635. DR RefSeq; NP_207715.1; NC_000915.1. DR RefSeq; WP_001160353.1; NC_018939.1. DR ProteinModelPortal; O25580; -. DR STRING; 85962.HP0923; -. DR PaxDb; O25580; -. DR EnsemblBacteria; AAD07978; AAD07978; HP_0923. DR GeneID; 899452; -. DR KEGG; heo:C694_04750; -. DR KEGG; hpy:HP0923; -. DR PATRIC; 20593147; VBIHelPyl33062_0959. DR OMA; EITNMQN; -. DR OrthoDB; EOG6ZH2DR; -. DR BioCyc; HPY:HP0923-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 369 AA; 41971 MW; FBE536439B30D735 CRC64; MQFQKALLHS SFFLPLFLSF CIAEENGAYA SVGFEYSISH AVEHNNPFLN QERIQIISNA QNKIYKLHQV KNEITSMPKT FAYINNALKN NSKLTPTEMQ AEQYYLQSTF QNIEKIVMLS GGVSSNPQLV QALEKMQEPI TNPLEFEENL RNLEVQFAQS QNRMLSSLSS QIAAISNSLN ALDPNSYSKN ISSMYGVSLS VGYKHFFTKK KNQGLRYYLF YDYGYTNFGF VGNGFDGLGK MNNHLYGLGI DYLYNFIDNA KKHSSVGFYL GFALAGSSWV GSGLSMWVSQ TDFINNYLTG YQAKMHTSFF QIPLNFGVRV NVNRHNGFEM GLKIPLAMNS FYETHGKGLN TSLFFKRLVM FNVSYVYSF // ID O25969_HELPY Unreviewed; 180 AA. AC O25969; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08466.1}; GN OrderedLocusNames=HP_1426 {ECO:0000313|EMBL:AAD08466.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08466.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08466.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08466.1; -; Genomic_DNA. DR PIR; B64698; B64698. DR ProteinModelPortal; O25969; -. DR STRING; 85962.HP1426; -. DR PaxDb; O25969; -. DR PRIDE; O25969; -. DR EnsemblBacteria; AAD08466; AAD08466; HP_1426. DR PATRIC; 20594251; VBIHelPyl33062_1495. DR OMA; PIGIISP; -. DR OrthoDB; EOG6PP9KT; -. DR BioCyc; HPY:HP1426-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 136 162 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 180 AA; 20406 MW; 34F937D5E2C76E5A CRC64; MLGFNLSHAI DESEPNKLVG KKVQEALAKE KAKAKNQRAD KSAFFAGLGY SGMFSWNLAY KDSFVLLRHY DFNFGGRLLE RKDPSTILNG FNFKVGYQYA APVKIKKMGF GVRGGFQYSY KAGNYMEKDK YQQHLFGVPI GIISPVSIFN GGMITMSTYS FFMDFYTMCM KMRSFSSVIL // ID O25561_HELPY Unreviewed; 41 AA. AC O25561; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07952.1}; GN OrderedLocusNames=HP_0901 {ECO:0000313|EMBL:AAD07952.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07952.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07952.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07952.1; -; Genomic_DNA. DR PIR; E64632; E64632. DR RefSeq; NP_207694.1; NC_000915.1. DR RefSeq; WP_000973857.1; NC_000915.1. DR ProteinModelPortal; O25561; -. DR IntAct; O25561; 1. DR STRING; 85962.HP0901; -. DR PaxDb; O25561; -. DR EnsemblBacteria; AAD07952; AAD07952; HP_0901. DR GeneID; 899431; -. DR KEGG; heo:C694_04625; -. DR KEGG; hpy:HP0901; -. DR PATRIC; 20593095; VBIHelPyl33062_0933. DR OrthoDB; EOG651T3G; -. DR BioCyc; HPY:HP0901-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 41 AA; 4886 MW; 2D31ED90FDF536D1 CRC64; MMKAVFINVW YLLLTIILLI IIWRIIRLVL KNKDDSNDKV G // ID O25194_HELPY Unreviewed; 259 AA. AC O25194; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07516.1}; GN OrderedLocusNames=HP_0446 {ECO:0000313|EMBL:AAD07516.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07516.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07516.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07516.1; -; Genomic_DNA. DR PIR; F64575; F64575. DR RefSeq; NP_207244.1; NC_000915.1. DR RefSeq; WP_001158055.1; NC_018939.1. DR ProteinModelPortal; O25194; -. DR STRING; 85962.HP0446; -. DR PaxDb; O25194; -. DR EnsemblBacteria; AAD07516; AAD07516; HP_0446. DR GeneID; 898873; -. DR KEGG; heo:C694_02265; -. DR KEGG; hpy:HP0446; -. DR PATRIC; 20592151; VBIHelPyl33062_0464. DR OMA; GICGYLK; -. DR OrthoDB; EOG6C2WCV; -. DR BioCyc; HPY:HP0446-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 259 AA; 30360 MW; EE13531B320DBD29 CRC64; MQERVFKRKV LDANILKEMH ANNVCYSKHS KDRFIPFKFD KFGYVGCKLF KKILNFPSNT TFFGGTGCKK LMELLSEIVI DSRSSKIALN RHYALTRLQW CDRTLRHNLQ ILERIGFLTA FKNKKGYIFL SMHDFTKIEN YEHSGLNGES NLPNSFFLGI CGYLKKLFKK LKDRAFRLAN KHGVFFLKIP KHFQMQNFNN IFLEFVSVNN PCFSYRLTYD QLVGKKIPNI KCSYQQAIVK KNIHRALDEL SIDKEILAS // ID O25485_HELPY Unreviewed; 284 AA. AC O25485; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Lipooligosaccharide 5G8 epitope biosynthesis-associated protein (Lex2B) {ECO:0000313|EMBL:AAD07853.1}; GN OrderedLocusNames=HP_0805 {ECO:0000313|EMBL:AAD07853.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07853.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07853.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07853.1; -; Genomic_DNA. DR PIR; E64620; E64620. DR RefSeq; NP_207598.1; NC_000915.1. DR RefSeq; WP_001263320.1; NC_018939.1. DR ProteinModelPortal; O25485; -. DR STRING; 85962.HP0805; -. DR CAZy; GT25; Glycosyltransferase Family 25. DR PaxDb; O25485; -. DR DNASU; 899352; -. DR EnsemblBacteria; AAD07853; AAD07853; HP_0805. DR GeneID; 899352; -. DR KEGG; heo:C694_04125; -. DR KEGG; hpy:HP0805; -. DR PATRIC; 20592897; VBIHelPyl33062_0837. DR eggNOG; ENOG4107EI9; Bacteria. DR eggNOG; COG3306; LUCA. DR KO; K07270; -. DR OMA; HGVKNYV; -. DR OrthoDB; EOG6RJV3W; -. DR BioCyc; HPY:HP0805-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002654; Glyco_trans_25. DR Pfam; PF01755; Glyco_transf_25; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 284 AA; 32973 MW; BD755D1DE4C8F9F0 CRC64; MRVFIIHLSP KTCQNFSLKE THITPLLESL KLQGISYEIF DAIYSKISPT QLHPLILEHL HPSFMVEDLW AFCKNKKHPP CALKNFFYAI KHCGKRMGFG ELGCYASHYS LWQKCIELNE AICILEDDII IKDRFKESLE FCRHHINELG YIRLMHLEEN VAKQKTPVKG VSQILNFKDG IGTQGYVLAP KAAQKLLKYS AKEWVMPIDC VMDRHYWHGV KNYVLEEFAI ACDGMNAQNS NTEKQRPKKL PLSIRIGRSL HKSTIKFLDK VFRYSPKLIR IGKH // ID O25366_HELPY Unreviewed; 476 AA. AC O25366; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Fucosyltransferase {ECO:0000313|EMBL:AAD07710.1}; GN OrderedLocusNames=HP_0651 {ECO:0000313|EMBL:AAD07710.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07710.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07710.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07710.1; -; Genomic_DNA. DR PIR; C64601; C64601. DR RefSeq; NP_207445.1; NC_000915.1. DR RefSeq; WP_000487430.1; NC_018939.1. DR ProteinModelPortal; O25366; -. DR SMR; O25366; 1-352. DR DIP; DIP-3531N; -. DR IntAct; O25366; 3. DR MINT; MINT-171425; -. DR STRING; 85962.HP0651; -. DR CAZy; GT10; Glycosyltransferase Family 10. DR PaxDb; O25366; -. DR EnsemblBacteria; AAD07710; AAD07710; HP_0651. DR GeneID; 900268; -. DR KEGG; heo:C694_03365; -. DR KEGG; hpy:HP0651; -. DR PATRIC; 20592587; VBIHelPyl33062_0682. DR eggNOG; ENOG4105GC5; Bacteria. DR eggNOG; ENOG410ZWEQ; LUCA. DR OMA; VGENERI; -. DR OrthoDB; EOG6C0138; -. DR BioCyc; HPY:HP0651-MONOMER; -. DR BRENDA; 2.4.1.152; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0008417; F:fucosyltransferase activity; IEA:InterPro. DR GO; GO:0006486; P:protein glycosylation; IEA:InterPro. DR InterPro; IPR016646; Alpha-1_3/4-FUT_helico. DR InterPro; IPR001503; Glyco_trans_10. DR PANTHER; PTHR11929; PTHR11929; 1. DR Pfam; PF00852; Glyco_transf_10; 1. DR PIRSF; PIRSF016150; Alpha1_3/4FUT_helico; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Glycosyltransferase {ECO:0000313|EMBL:AAD07710.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07710.1}. FT COILED 364 440 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 476 AA; 55927 MW; 32BFFDBBD36E1F74 CRC64; MFQPLLDAFI ESASIEKMVS KSPPPPLKIA VANWWGDEEI KEFKKSVLYF ILSQRYAITL HQNPNESSDL VFSNPLGAAR KILSYQNTKR VFYTGENESP NFNLFDYAIG FDELDFNDRY LRMPLYYAHL HYEAELVNDT TAPYKLKDNS LYALKKPSHH FKENHPNLCA VVNDESDLLK RGFASFVASN ANAPMRNAFY DALNSIEPVT GGGSVRNTLG YKVGNKSEFL SQYKFNLCFE NSQGYGYVTE KILDAYFSHT IPIYWGSPSV AKDFNPKSFV NVHDFNNFDE AIDYIKYLHT HPNAYLDMLY ENPLNTLDGK AYFYQDLSFK KILDFFKTIL ENDTIYHNNP FIFYRDLHEP LISIDDLRVN YDDLRVNYDD LRVNYDDLRV NYDDLRVNYD DLRVNYDDLR VNYDDLRVNY DDLRVNYDDL RVNYDRLLQN ASPLLELSQN TTFKIYRKAY QKSLPLLRTI RRWVKK // ID O25810_HELPY Unreviewed; 172 AA. AC O25810; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Ulcer-associated gene restriction endonuclease (IceA) {ECO:0000313|EMBL:AAD08253.1}; GN OrderedLocusNames=HP_1209 {ECO:0000313|EMBL:AAD08253.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08253.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08253.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08253.1; -; Genomic_DNA. DR RefSeq; WP_000393723.1; NC_018939.1. DR ProteinModelPortal; O25810; -. DR STRING; 85962.HP1209; -. DR REBASE; 56833; Hpy26695ORF6255P. DR PaxDb; O25810; -. DR EnsemblBacteria; AAD08253; AAD08253; HP_1209. DR KEGG; heo:C694_06260; -. DR PATRIC; 20593789; VBIHelPyl33062_1267. DR OMA; WSAKNIK; -. DR OrthoDB; EOG6WQD6P; -. DR BioCyc; HPY:HP1209-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW. DR InterPro; IPR003615; HNH_nuc. DR InterPro; IPR007979; NlaIII/ICEA1. DR Pfam; PF05315; ICEA; 1. DR SMART; SM00507; HNHc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Endonuclease {ECO:0000313|EMBL:AAD08253.1}; KW Hydrolase {ECO:0000313|EMBL:AAD08253.1}; KW Nuclease {ECO:0000313|EMBL:AAD08253.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 34 92 HNHc. {ECO:0000259|SMART:SM00507}. SQ SEQUENCE 172 AA; 20006 MW; 8E963911606B7A35 CRC64; MEFDKGQTLG NFIDRIRLNG YNTECVFNQS ICQDIKNHYK QQCCAMCGVR GNSENTQIEV DHKDGRKDDS RVSDLSTQAF DDFQALCKAC NDKKRQICKK CKETGYRFDA RKIPGNHYSF YEGEAEYDGC VGCYQYDPIQ YRKTCNDRIY NEGYQKGYSD GYQIGYHQKT TL // ID O25915_HELPY Unreviewed; 417 AA. AC O25915; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Competence locus E (ComE3) {ECO:0000313|EMBL:AAD08401.1}; GN OrderedLocusNames=HP_1361 {ECO:0000313|EMBL:AAD08401.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08401.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08401.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08401.1; -; Genomic_DNA. DR PIR; A64690; A64690. DR RefSeq; NP_208153.1; NC_000915.1. DR RefSeq; WP_010875615.1; NC_000915.1. DR ProteinModelPortal; O25915; -. DR STRING; 85962.HP1361; -. DR TCDB; 3.A.11.3.1; the bacterial competence-related dna transformation transporter (dna-t) family. DR PaxDb; O25915; -. DR PRIDE; O25915; -. DR EnsemblBacteria; AAD08401; AAD08401; HP_1361. DR GeneID; 900327; -. DR KEGG; hpy:HP1361; -. DR PATRIC; 20594111; VBIHelPyl33062_1426. DR eggNOG; ENOG4107XJD; Bacteria. DR eggNOG; COG0658; LUCA. DR KO; K02238; -. DR OMA; FFRAFLM; -. DR OrthoDB; EOG6WT8BS; -. DR BioCyc; HPY:HP1361-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR004477; ComEC_N. DR Pfam; PF03772; Competence; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 156 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 210 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 216 235 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 242 274 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 294 315 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 327 350 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 370 387 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 394 415 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 139 365 Competence. {ECO:0000259|Pfam:PF03772}. SQ SEQUENCE 417 AA; 47985 MW; B9D557BE7F7ED828 CRC64; MCGVFLSLLL AINLYLEYLN YQKLDFSKPT SLSAQILLQY PKTKDQKTYF VLKLQSKNMI FYTTIKEPLK NLQYRHAQFF GKIKPCSFLE SLKSCFFQTY SFSLTRKQDF KSHWRHFIDS AHENALVGNL YRALFIGDSL NKDLRDRANA LGINHLLAIS GFHLGILSVS VYFLSSLFYT PLQKRYFPYR NAFYDIGVLV WVFLLGYLLL LDFLPSFFRA FLMGLLGFLA CFFGVRLLSF KLLILACCIA IALLPKLLFS VGFLLSVCGV WYIFLFLKHT QIFFKTSSFL MRSFQAISLS ALVFLNMLII VHAFFPMFSP YQLFSIPLGL IFIVFFPLSL FLHAVGLGSL LDRLLSMPLT IPTISVPSPL WLLGVHLFLT ILSARFFKVY LSMNVLSAGF FLYCCYQYII MPSLIVG // ID O25108_HELPY Unreviewed; 31 AA. AC O25108; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07418.1}; GN OrderedLocusNames=HP_0341 {ECO:0000313|EMBL:AAD07418.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07418.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07418.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07418.1; -; Genomic_DNA. DR PIR; E64562; E64562. DR RefSeq; NP_207139.1; NC_000915.1. DR RefSeq; WP_000916576.1; NC_018939.1. DR ProteinModelPortal; O25108; -. DR STRING; 85962.HP0341; -. DR PaxDb; O25108; -. DR EnsemblBacteria; AAD07418; AAD07418; HP_0341. DR GeneID; 900096; -. DR KEGG; heo:C694_01730; -. DR KEGG; hpy:HP0341; -. DR BioCyc; HPY:HP0341-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 31 AA; 3517 MW; 2E664E0DA80971F9 CRC64; MLKNFKKAFF RALCLGALCL LGEWCSNLGR L // ID O25015_HELPY Unreviewed; 483 AA. AC O25015; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Outer membrane protein (Omp6) {ECO:0000313|EMBL:AAD07298.1}; GN OrderedLocusNames=HP_0229 {ECO:0000313|EMBL:AAD07298.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07298.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07298.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07298.1; -; Genomic_DNA. DR PIR; E64548; E64548. DR RefSeq; NP_207027.1; NC_000915.1. DR RefSeq; WP_000751160.1; NC_018939.1. DR ProteinModelPortal; O25015; -. DR DIP; DIP-3733N; -. DR IntAct; O25015; 1. DR MINT; MINT-170334; -. DR STRING; 85962.HP0229; -. DR PaxDb; O25015; -. DR EnsemblBacteria; AAD07298; AAD07298; HP_0229. DR GeneID; 899171; -. DR KEGG; heo:C694_01155; -. DR KEGG; hpy:HP0229; -. DR PATRIC; 20591683; VBIHelPyl33062_0240. DR OMA; INNTNFQ; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP0229-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 42 69 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 483 AA; 53063 MW; B2CCFB350C27039A CRC64; MKKTILLSLM VSSLLAENDG VFMSVGYQIG EAVQQVKNTG EIQKVSNAYE NLNNLLTRYN ELKQTASNTN SSTAQAIDNL KESASRLKTT PNSANQAVSS ALSSAVAMWQ VIVSNLANNS LPTSEYNKIN AISQSLQNTL ENKNNDLKIE NDYDHLLTQA STIINTLQSQ CPGIDGGNGK PWGINASGNA CNIFGNTFNA ITSMIDSAKK AAADARRTAP ESPNQPSAFN NADFNKNLNQ VSSVINDTIS YLKGDNLATI YNTLQKTPDS KGFQSLVSRS SYSYSLNETQ YSEFQTTTKE FGHNPFRSVG LINSQSNNGA MNGVGVQLGY KQFFGKNKFF GIRYYAFFDY NHAYIKSNFF NSASNVFTYG AGSDLLLNFI NGGSDKNRKV SFGIFGGIAL AGTTWLNSQF MNLKTTNSAY SAKINNTNFQ FLFNTGLRLQ GIHHGVELGV KIPTINTNYY SFMGAKLAYR RLYSVYFNYV LAY // ID O25866_HELPY Unreviewed; 94 AA. AC O25866; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08328.1}; GN OrderedLocusNames=HP_1276 {ECO:0000313|EMBL:AAD08328.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08328.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08328.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08328.1; -; Genomic_DNA. DR PIR; D64679; D64679. DR RefSeq; NP_208068.1; NC_000915.1. DR RefSeq; WP_000358197.1; NC_018939.1. DR ProteinModelPortal; O25866; -. DR STRING; 85962.HP1276; -. DR PaxDb; O25866; -. DR EnsemblBacteria; AAD08328; AAD08328; HP_1276. DR GeneID; 900264; -. DR KEGG; heo:C694_06595; -. DR KEGG; hpy:HP1276; -. DR PATRIC; 20593929; VBIHelPyl33062_1335. DR OMA; THEMKKE; -. DR OrthoDB; EOG6J1DJ4; -. DR BioCyc; HPY:HP1276-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 94 AA; 10736 MW; 4FFDF3021F8E4046 CRC64; MDKKDKNKNA SHLTHEMKKE HGGLLEASKK AEMQPIFKAL WGIAQEEKEG YKQAAEGYKK ALEAKEKMDK IVNTLKAINH DNNTIDIEPE DEKD // ID O25318_HELPY Unreviewed; 192 AA. AC O25318; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07665.1}; GN OrderedLocusNames=HP_0596 {ECO:0000313|EMBL:AAD07665.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07665.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07665.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3GUQ} RP X-RAY CRYSTALLOGRAPHY (2.47 ANGSTROMS) OF 28-192. RX PubMed=19643085; DOI=10.1016/j.bbrc.2009.07.121; RA Tsuge H., Tsurumura T., Utsunomiya H., Kise D., Kuzuhara T., RA Watanabe T., Fujiki H., Suganuma M.; RT "Structural basis for the Helicobacter pylori-carcinogenic TNF-alpha- RT inducing protein."; RL Biochem. Biophys. Res. Commun. 388:193-198(2009). RN [3] {ECO:0000213|PDB:2WCQ, ECO:0000213|PDB:2WCR} RP X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS) OF 34-192. RX PubMed=19401200; DOI=10.1016/j.febslet.2009.04.033; RA Tosi T., Cioci G., Jouravleva K., Dian C., Terradot L.; RT "Structures of the tumor necrosis factor alpha inducing protein RT Tipalpha: a novel virulence factor from Helicobacter pylori."; RL FEBS Lett. 583:1581-1585(2009). RN [4] {ECO:0000213|PDB:3GIO} RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 28-192. RX PubMed=19596016; DOI=10.1016/j.jmb.2009.07.010; RA Jang J.Y., Yoon H.J., Yoon J.Y., Kim H.S., Lee S.J., Kim K.H., RA Kim d.o. .J., Jang S., Han B.G., Lee B.I., Suh S.W.; RT "Crystal structure of the TNF-alpha-Inducing protein (Tipalpha) from RT Helicobacter pylori: Insights into Its DNA-binding activity."; RL J. Mol. Biol. 392:191-197(2009). RN [5] {ECO:0000213|PDB:3VNC} RP X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 25-192. RX PubMed=22860022; DOI=10.1371/journal.pone.0041871; RA Gao M., Li D., Hu Y., Zhang Y., Zou Q., Wang D.C.; RT "Crystal structure of TNF-alpha-inducing protein from Helicobacter RT pylori in active form reveals the intrinsic molecular flexibility for RT unique DNA-binding."; RL PLoS ONE 7:e41871-e41871(2012). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07665.1; -; Genomic_DNA. DR PIR; D64594; D64594. DR RefSeq; NP_207391.1; NC_000915.1. DR RefSeq; WP_000890837.1; NC_018939.1. DR PDB; 2WCQ; X-ray; 1.90 A; A/B=34-192. DR PDB; 2WCR; X-ray; 1.70 A; A/B=34-192. DR PDB; 3GIO; X-ray; 2.40 A; A/B=28-192. DR PDB; 3GUQ; X-ray; 2.47 A; A=28-192. DR PDB; 3VNC; X-ray; 2.60 A; A/B=25-192. DR PDBsum; 2WCQ; -. DR PDBsum; 2WCR; -. DR PDBsum; 3GIO; -. DR PDBsum; 3GUQ; -. DR PDBsum; 3VNC; -. DR STRING; 85962.HP0596; -. DR PaxDb; O25318; -. DR EnsemblBacteria; AAD07665; AAD07665; HP_0596. DR GeneID; 898978; -. DR KEGG; heo:C694_03080; -. DR KEGG; hpy:HP0596; -. DR PATRIC; 20592471; VBIHelPyl33062_0624. DR OMA; KMSLDNQ; -. DR OrthoDB; EOG6K9QGV; -. DR BioCyc; HPY:HP0596-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR031923; Tipalpha. DR Pfam; PF16753; Tipalpha; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2WCQ, ECO:0000213|PDB:2WCR, KW ECO:0000213|PDB:3GIO, ECO:0000213|PDB:3GUQ}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 192 AA; 21878 MW; F643AFD91293D9CF CRC64; MLEKSFLKSK QLFLCGLGVL MLQACTCPNT SQRNSFLQDV PYWMLQNRSE YITQGVDSSH IVDGKKTEEI EKIATKRATI RVAQNIVHKL KEAYLSKTNR IKQKITNEMF IQMTQPIYDS LMNVDRLGIY INPNNEEVFA LVRARGFDKD ALSEGLHKMS LDNQAVSILV AKVEEIFKDS VNYGDVKVPI AM // ID O26047_HELPY Unreviewed; 95 AA. AC O26047; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08559.1}; GN OrderedLocusNames=HP_1518 {ECO:0000313|EMBL:AAD08559.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08559.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08559.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08559.1; -; Genomic_DNA. DR PIR; F64709; F64709. DR RefSeq; NP_208309.1; NC_000915.1. DR RefSeq; WP_000617669.1; NC_018939.1. DR ProteinModelPortal; O26047; -. DR DIP; DIP-3752N; -. DR IntAct; O26047; 8. DR MINT; MINT-175273; -. DR STRING; 85962.HP1518; -. DR REBASE; 56817; Hpy26695ORFAP. DR PaxDb; O26047; -. DR DNASU; 899773; -. DR EnsemblBacteria; AAD08559; AAD08559; HP_1518. DR GeneID; 899773; -. DR KEGG; heo:C694_07860; -. DR KEGG; hpy:HP1518; -. DR PATRIC; 20594453; VBIHelPyl33062_1595. DR eggNOG; COG1002; LUCA. DR OMA; IKERYAY; -. DR BioCyc; HPY:HP1518-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 95 AA; 11219 MW; DCBCF52D21F376DA CRC64; MIRFAHISLK DFIKKHNPQT PTKETIENFE KEINSLLENA PRQDDEEFQK NEINKFLGKV SSIEKHYTYK SVALKNAFIN NDKLLKHVFL SDVRN // ID O25135_HELPY Unreviewed; 156 AA. AC O25135; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Biotin carboxyl carrier protein (FabE) {ECO:0000313|EMBL:AAD07435.1}; GN OrderedLocusNames=HP_0371 {ECO:0000313|EMBL:AAD07435.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07435.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07435.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25330:HP_0609; NbExp=3; IntAct=EBI-7492921, EBI-7493198; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07435.1; -; Genomic_DNA. DR PIR; C64566; C64566. DR RefSeq; NP_207169.1; NC_000915.1. DR RefSeq; WP_001053815.1; NC_018939.1. DR ProteinModelPortal; O25135; -. DR DIP; DIP-3399N; -. DR IntAct; O25135; 9. DR MINT; MINT-162332; -. DR STRING; 85962.HP0371; -. DR PaxDb; O25135; -. DR EnsemblBacteria; AAD07435; AAD07435; HP_0371. DR GeneID; 900086; -. DR KEGG; heo:C694_01885; -. DR KEGG; hpy:HP0371; -. DR PATRIC; 20591979; VBIHelPyl33062_0383. DR eggNOG; ENOG4105KM4; Bacteria. DR eggNOG; COG0511; LUCA. DR KO; K02160; -. DR OMA; EVEYPCK; -. DR OrthoDB; EOG6CVV6Z; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009317; C:acetyl-CoA carboxylase complex; IEA:InterPro. DR GO; GO:0003989; F:acetyl-CoA carboxylase activity; IEA:InterPro. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:InterPro. DR InterPro; IPR001249; AcCoA_biotinCC. DR InterPro; IPR000089; Biotin_lipoyl. DR InterPro; IPR011053; Single_hybrid_motif. DR Pfam; PF00364; Biotin_lipoyl; 1. DR PRINTS; PR01071; ACOABIOTINCC. DR SUPFAM; SSF51230; SSF51230; 1. DR TIGRFAMs; TIGR00531; BCCP; 1. DR PROSITE; PS50968; BIOTINYL_LIPOYL; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 78 154 Lipoyl-binding. FT {ECO:0000259|PROSITE:PS50968}. SQ SEQUENCE 156 AA; 17133 MW; 2F3B860AD53947C5 CRC64; MNLSEIEELI KEFKASDLGH LKLKHEHFEL VLDKESAYAK KSALNPAHSP APIMVEASMP SVQTPVPMVC TPIVDKKEDF VLSPMVGTFY HAPSPGAEPY VKAGDTLKKG QIVGIVEAMK IMNEIEVEYP CKVVSVEVGD AQPVEYGTKL IKVEKL // ID O25049_HELPY Unreviewed; 327 AA. AC O25049; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07346.1}; GN OrderedLocusNames=HP_0271 {ECO:0000313|EMBL:AAD07346.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07346.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07346.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07346.1; -; Genomic_DNA. DR PIR; G64553; G64553. DR RefSeq; NP_207069.1; NC_000915.1. DR RefSeq; WP_000911905.1; NC_018939.1. DR ProteinModelPortal; O25049; -. DR STRING; 85962.HP0271; -. DR PaxDb; O25049; -. DR EnsemblBacteria; AAD07346; AAD07346; HP_0271. DR GeneID; 899189; -. DR KEGG; heo:C694_01370; -. DR KEGG; hpy:HP0271; -. DR PATRIC; 20591769; VBIHelPyl33062_0282. DR OMA; CEKQAFE; -. DR OrthoDB; EOG6Q5NR7; -. DR BioCyc; HPY:HP0271-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 327 AA; 38558 MW; D54725037BB816EA CRC64; MLKGLKKAFK ERFCSQVYIS FNVDHNLLST QVIRIKNDRI KEKFFKTFET KVETKNGEVP IQALKIARTY SQKYPYTYFS AMSKAKEVLC EKQAFEQIKQ ENQDYHACEV NQKYCVYVES KDFLKDFKRF KIQDVDFLFS PFSLIYDFVR DNLENKPLLY LLLERSRFYF LIADKKEIFL AKSVFLEEQP EEFIESKEED FMGMDNEAVD LFLSEIQEDI DSLEEAIGLD SSKDNSEKIT EDAYSLIEGM TNIPLIADVL QEGLRGVYHS REIDFVEKVV VLDSCQIHQK ALMHLQETLM IEVDRLDFSL VERLNILARM ENEKHAF // ID O25221_HELPY Unreviewed; 265 AA. AC O25221; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 113. DE SubName: Full=Molybdenum ABC transporter, ATP-binding protein (ModD) {ECO:0000313|EMBL:AAD07543.1}; GN OrderedLocusNames=HP_0475 {ECO:0000313|EMBL:AAD07543.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07543.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07543.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07543.1; -; Genomic_DNA. DR PIR; C64579; C64579. DR RefSeq; NP_207273.1; NC_000915.1. DR RefSeq; WP_000588404.1; NC_018939.1. DR ProteinModelPortal; O25221; -. DR STRING; 85962.HP0475; -. DR PaxDb; O25221; -. DR EnsemblBacteria; AAD07543; AAD07543; HP_0475. DR GeneID; 900061; -. DR KEGG; heo:C694_02435; -. DR KEGG; hpy:HP0475; -. DR PATRIC; 20592221; VBIHelPyl33062_0499. DR eggNOG; ENOG4108IJ6; Bacteria. DR eggNOG; COG1118; LUCA. DR KO; K02017; -. DR OMA; QTFLFLN; -. DR OrthoDB; EOG6P5ZHH; -. DR BioCyc; HPY:HP0475-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07543.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033, KW ECO:0000313|EMBL:AAD07543.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 232 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 265 AA; 30186 MW; 3B3D68A0D341B6C8 CRC64; MIKARFKKRL LGSRGAFDLN IDLEIKEAEV VALLGESGAG KSTILRILAG LEAVNSGYIE VNHSVWLDTQ KKIFLKPQQR KIGFVFQDYA LFPHLNVYQN IAFAHPKDKN KIHEVLRLMR LENLSQQKIL QLSGGQAQRV ALARALIAAK NLLLLDEPLN ALDNALKNEV QQGLLDFIKR ENLSVLLVSH NPNEITKLAQ TFLFLNNGVI DPNQENRLFS NRLLIKPLFE DENYCHYEVI SQTISLPKDC LNPTFKLDFN QNKKF // ID O26090_HELPY Unreviewed; 164 AA. AC O26090; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 98. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08607.1}; GN OrderedLocusNames=HP_1570 {ECO:0000313|EMBL:AAD08607.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08607.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08607.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|PIRSR:PIRSR006118-2}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08607.1; -; Genomic_DNA. DR PIR; B64716; B64716. DR RefSeq; NP_208361.1; NC_000915.1. DR RefSeq; WP_000593725.1; NC_018939.1. DR ProteinModelPortal; O26090; -. DR IntAct; O26090; 2. DR MINT; MINT-169651; -. DR STRING; 85962.HP1570; -. DR PaxDb; O26090; -. DR DNASU; 899721; -. DR EnsemblBacteria; AAD08607; AAD08607; HP_1570. DR GeneID; 899721; -. DR KEGG; heo:C694_08135; -. DR KEGG; hpy:HP1570; -. DR PATRIC; 20594567; VBIHelPyl33062_1651. DR eggNOG; ENOG4108Z4R; Bacteria. DR eggNOG; COG1778; LUCA. DR KO; K03270; -. DR OMA; FDENFHE; -. DR OrthoDB; EOG62C9JR; -. DR BioCyc; HPY:HP1570-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0019143; F:3-deoxy-manno-octulosonate-8-phosphatase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1000; -; 1. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006549; HAD-SF_hydro_IIIA. DR InterPro; IPR010023; KDO_8-P_phosphatase. DR Pfam; PF08282; Hydrolase_3; 1. DR PIRSF; PIRSF006118; KDO8-P_Ptase; 1. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01662; HAD-SF-IIIA; 1. DR TIGRFAMs; TIGR01670; KdsC-phosphatas; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|SAAS:SAAS00455242}; KW Magnesium {ECO:0000256|PIRSR:PIRSR006118-2}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR006118-2}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 77 142 HAD-like_dom. {ECO:0000259|Pfam:PF08282}. FT METAL 8 8 Magnesium. FT {ECO:0000256|PIRSR:PIRSR006118-2}. FT METAL 10 10 Magnesium; via carbonyl oxygen. FT {ECO:0000256|PIRSR:PIRSR006118-2}. FT METAL 101 101 Magnesium. FT {ECO:0000256|PIRSR:PIRSR006118-2}. SQ SEQUENCE 164 AA; 18267 MW; F1552592AFEE9F7D CRC64; MIKLLLLDVD GTLTDGSLYF DENFHEIKAF NVKDGLGMTL WQKLGKKIAI ITGRTSIMVK KRMESLGVQF VFMGVENKNT VIERLKKDLQ LSAQEIACVG DDYNDLGMFK ACALSFAPFD AHPLLKSKAY KVLQNSGGKG AVREAIDYLL TLEGLQDEAL KLYL // ID O25383_HELPY Unreviewed; 390 AA. AC O25383; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 108. DE SubName: Full=Solute-binding signature and mitochondrial signature protein (AspB) {ECO:0000313|EMBL:AAD07733.1}; GN OrderedLocusNames=HP_0672 {ECO:0000313|EMBL:AAD07733.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07733.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07733.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU000479}; CC -!- SIMILARITY: Belongs to the class-I pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU000479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07733.1; -; Genomic_DNA. DR PIR; H64603; H64603. DR RefSeq; NP_207466.1; NC_000915.1. DR RefSeq; WP_000967300.1; NC_018939.1. DR ProteinModelPortal; O25383; -. DR STRING; 85962.HP0672; -. DR PaxDb; O25383; -. DR EnsemblBacteria; AAD07733; AAD07733; HP_0672. DR GeneID; 900010; -. DR KEGG; heo:C694_03475; -. DR KEGG; hpy:HP0672; -. DR PATRIC; 20592629; VBIHelPyl33062_0703. DR eggNOG; ENOG4105CHM; Bacteria. DR eggNOG; COG0436; LUCA. DR KO; K00812; -. DR OMA; SNPTGML; -. DR OrthoDB; EOG6RRKNS; -. DR BioCyc; HPY:HP0672-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR004838; NHTrfase_class1_PyrdxlP-BS. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00105; AA_TRANSFER_CLASS_1; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000256|RuleBase:RU000481}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU000479}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU000481}. FT DOMAIN 31 382 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 390 AA; 42875 MW; FDEE58B9CA400588 CRC64; MLYSSKIQSL SESATIAIST LAKELKSQGK DILSFSAGEP DFDTPQAIKD AAIKALNDGF TKYTPVAGIP ELLKAIAFKL KKENNLDYEP NEILVSNGAK QSLFNAIQAL IEEGDEVIIP VPFWVTYPEL VKYSGGVSQF IQTDEKSHFK ITPKQLKDAL SPKTKMLILT TPSNPTGMLY SKAELEVLGE VLKDTKVWVL SDEIYEKLVY KGEFVSCAAV SEEMKKRTIT ISGLSKSVAM TGWRMGYAAS KDKKLVKLMN NLQSQCTSNI NSITQMASIV ALEGLVDKEI ETMRQAFERR CDLAHAKINA IGGLNALKPD GAFYLFIHIG SLCGGDSMRF CHELLEKEGV ALVPGKAFGL EGYVRLSFAC SEEQIEKGIE RIARFVKSKG // ID O25077_HELPY Unreviewed; 90 AA. AC O25077; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07382.1}; GN OrderedLocusNames=HP_0307 {ECO:0000313|EMBL:AAD07382.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07382.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07382.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07382.1; -; Genomic_DNA. DR PIR; C64558; C64558. DR RefSeq; NP_207105.1; NC_000915.1. DR RefSeq; WP_001010071.1; NC_000915.1. DR ProteinModelPortal; O25077; -. DR IntAct; O25077; 3. DR STRING; 85962.HP0307; -. DR PaxDb; O25077; -. DR PRIDE; O25077; -. DR EnsemblBacteria; AAD07382; AAD07382; HP_0307. DR GeneID; 899202; -. DR KEGG; hpy:HP0307; -. DR PATRIC; 20591841; VBIHelPyl33062_0318. DR eggNOG; ENOG4105XZ2; Bacteria. DR eggNOG; ENOG41125PY; LUCA. DR OMA; CEFLKKP; -. DR OrthoDB; EOG6NSGMM; -. DR BioCyc; HPY:HP0307-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032820; ATPase_put. DR Pfam; PF09527; ATPase_gene1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 65 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 90 AA; 10433 MW; 6A38A445BBF805F6 CRC64; MNFLKKPKYY KFIEGANYLS LGLSMVVAIL MGVAIGYGLK KLTHISWLFW LGVIWGVLAS FLNVYKAYKN MQKDYEELAK DPKYTQNKTK // ID O25478_HELPY Unreviewed; 48 AA. AC O25478; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07847.1}; GN OrderedLocusNames=HP_0789 {ECO:0000313|EMBL:AAD07847.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07847.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07847.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07847.1; -; Genomic_DNA. DR PIR; E64618; E64618. DR RefSeq; NP_207582.1; NC_000915.1. DR RefSeq; WP_001105655.1; NC_018939.1. DR ProteinModelPortal; O25478; -. DR STRING; 85962.HP0789; -. DR PaxDb; O25478; -. DR EnsemblBacteria; AAD07847; AAD07847; HP_0789. DR GeneID; 898911; -. DR KEGG; heo:C694_04045; -. DR KEGG; hpy:HP0789; -. DR PATRIC; 20592865; VBIHelPyl33062_0821. DR BioCyc; HPY:HP0789-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 48 AA; 5492 MW; ED5911D96F57BFEB CRC64; MNYETIAESN ESTVVAEFHS NNERKSAYES EAELERAFIA LLEKQALK // ID O26046_HELPY Unreviewed; 1279 AA. AC O26046; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Type IIS restriction enzyme R and M protein (ECO57IR) {ECO:0000313|EMBL:AAD08556.1}; GN OrderedLocusNames=HP_1517 {ECO:0000313|EMBL:AAD08556.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08556.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08556.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08556.1; -; Genomic_DNA. DR PIR; E64709; E64709. DR RefSeq; NP_208308.1; NC_000915.1. DR RefSeq; WP_000384831.1; NC_018939.1. DR ProteinModelPortal; O26046; -. DR DIP; DIP-3314N; -. DR IntAct; O26046; 1. DR MINT; MINT-171685; -. DR STRING; 85962.HP1517; -. DR REBASE; 3071; HpyAXIV. DR PaxDb; O26046; -. DR EnsemblBacteria; AAD08556; AAD08556; HP_1517. DR GeneID; 899774; -. DR KEGG; heo:C694_07855; -. DR KEGG; hpy:HP1517; -. DR PATRIC; 20594451; VBIHelPyl33062_1594. DR eggNOG; ENOG4105EBQ; Bacteria. DR eggNOG; COG1002; LUCA. DR KO; K00571; -. DR OMA; CKESITP; -. DR OrthoDB; EOG6TBHCK; -. DR BioCyc; HPY:HP1517-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 4. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR011639; RM_methylase_Eco57I. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR025931; TaqI_C. DR Pfam; PF07669; Eco57I; 1. DR Pfam; PF12950; TaqI_C; 1. DR SUPFAM; SSF53335; SSF53335; 4. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 843 952 Eco57I. {ECO:0000259|Pfam:PF07669}. FT DOMAIN 1058 1217 TaqI_C. {ECO:0000259|Pfam:PF12950}. SQ SEQUENCE 1279 AA; 149716 MW; 5838BF4E242A7A31 CRC64; MDYKKLDLPN TNYPNQEQLK AFETAFDAFL ETNQQENENH QNDAFNDLLK GVFKYKVKPT KKIDSTILNE NNEVEVIIEF KALKNPNEFI KKGDLNVKAF HESLLSYLTE RKEGNNNLKH LILATIKELY IIDANEFEVF NKDKEIENAF KNCHDRKGND TRTKAFYDAC QKRLNEFDRS LKYHYIPLKK ENLALIYQAL SPNFLLKIPK YSDANTLNKD FYEELLYILG LEEQNDKGKI LIKPSRTQNS LSDALKKEYK NLDDEEVMAL LIAWNNRILF LRLLESLLIS FKHFENPFLT TENFENFNDL NTLFFEVLAK KNSERLPEIK EDKILEKIPY LNSSLFDKTP LELKGHEIKL LDNKKLEIYK NSVLKKHKDY QKEKPLPLLK YLFKFLRLYK FTTTPKDIKD NTDTSESRLI NPSVLGLVFE KLNGYKEGSF YTPSFITSYM CKESITPIVL DKFNAIYQWD CENLKALRGE IDRNFSNEKA KEYLNTLLTL RICDPAVGSG HFLVSALNEM VRVAYELGLI ASLYRYDLKL ENDEIIIHHT PTGEIFNYIK PDSENDPHHH IQKELFNLKK SIIENCLFGV DINPNSCEIT KLRLWIELLK YSYYIFEKGK NTNALETLPN IDINIKCANS LISRFALKDK ALLKSEKNKN LEYSIAEYKE LVKIYKDPKI LETLTHPIKD SNAVRKYAKE RLYQELKQNP NKDFKKALND RIEKIKKAFK LTLNPPPKEL KFKKFLKEHL ELYGKSILEE ANYNGLELEA LALEKQMANL FFDYRPYPKL DKSDKVVGLE HFNRYVLTSY KDLQDENERY ANALEWRFEF PEVLDDEGDF SGFDCIIGNP PYIRQEHIKD LKPLLEKQYQ DFYNSTADIY TYFFALAFHL LKEKGFSAFI TSNKYTRAKY GAKLREWLLK KTTIVSYMEL NALKVFESAA VDTSIIHFIK QTPSKESEFK YYEPTPNDKD DLKSTPHLLM KQNVLSTESF IFANATLLDL RDKIESVGTP LKDWDIQINY GIKTGANEAF IIPTEKREEI LNACKTQEER ERTERLIKPI LRGKDIKRYS YEWAHLWVIN THNGYTSSLK SKIPPIDIEK YPAIKAHLDA HYDTIATRCD QGDTPYHLRN CAYLEDFEKE KIVWASVGFV EYCMIPGLLI LDTNYFFEVS KFGNTKNYLL GLLNSKLLTF WLKAKNTPLG DMGAYRNYKY NIMELPMVKI TAKNKKIADK IIALVDKILQ AKEKDPKANT QKLEKEIDAL VYQLYHLTDE EIKIIEEGQ // ID O26100_HELPY Unreviewed; 220 AA. AC O26100; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08625.1}; GN OrderedLocusNames=HP_1580 {ECO:0000313|EMBL:AAD08625.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08625.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08625.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08625.1; -; Genomic_DNA. DR PIR; D64717; D64717. DR RefSeq; NP_208371.1; NC_000915.1. DR RefSeq; WP_000898299.1; NC_000915.1. DR ProteinModelPortal; O26100; -. DR STRING; 85962.HP1580; -. DR PaxDb; O26100; -. DR PRIDE; O26100; -. DR EnsemblBacteria; AAD08625; AAD08625; HP_1580. DR GeneID; 899711; -. DR KEGG; hpy:HP1580; -. DR PATRIC; 20594587; VBIHelPyl33062_1661. DR eggNOG; ENOG4105P1V; Bacteria. DR eggNOG; ENOG4111U34; LUCA. DR OMA; AFSNAHK; -. DR OrthoDB; EOG6742VG; -. DR BioCyc; HPY:HP1580-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.20.144.10; -; 1. DR InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase. DR Pfam; PF01569; PAP2; 1. DR SUPFAM; SSF48317; SSF48317; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 170 188 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 117 192 acidPPc. {ECO:0000259|Pfam:PF01569}. SQ SEQUENCE 220 AA; 24549 MW; E4DBD2E8DAB7D71C CRC64; MLFNGLCLFE QASLCFRKAS VSMKKLKGLF LILLLWVYPL RSEPINEGAY ILEEIGDVLR FLPIFVGTVS LAMRDYRGLG ELAVGTLVTQ GVIYGLKGAF SNAHKDGARV EFAKRPCCNS WRGMPSGHAG GVFSAAGFVY YRYGWKPALP VIALAILTDA SRVVARQHTI LQVTIGSLIA WGFAYLFTSR YKPKQWMLYP EISSDFKGSS RYGVSFSYQW // ID O25390_HELPY Unreviewed; 289 AA. AC O25390; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Lipopolysaccharide biosynthesis protein (WbpB) {ECO:0000313|EMBL:AAD14883.1}; GN OrderedLocusNames=HP_0679 {ECO:0000313|EMBL:AAD14883.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14883.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14883.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14883.1; -; Genomic_DNA. DR PIR; G64604; G64604. DR ProteinModelPortal; O25390; -. DR DIP; DIP-3198N; -. DR IntAct; O25390; 2. DR MINT; MINT-185563; -. DR STRING; 85962.HP0679; -. DR PaxDb; O25390; -. DR PRIDE; O25390; -. DR DNASU; 898956; -. DR EnsemblBacteria; AAD14883; AAD14883; HP_0679. DR PATRIC; 20592641; VBIHelPyl33062_0709. DR eggNOG; ENOG4107R5Z; Bacteria. DR eggNOG; COG0673; LUCA. DR OMA; AGYIAPR; -. DR OrthoDB; EOG6PCPTK; -. DR BioCyc; HPY:HP0679-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR InterPro; IPR004104; OxRdtase_C. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR Pfam; PF02894; GFO_IDH_MocA_C; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 124 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. FT DOMAIN 139 248 GFO_IDH_MocA_C. FT {ECO:0000259|Pfam:PF02894}. SQ SEQUENCE 289 AA; 32941 MW; D97B2C657698AEFF CRC64; MLFAMIGSGG FIAPKHLQAI RDTGHFLDCS FDIHDSVGVL DEYFAQSEFF TNIEDFEKHL EQSKDMGKEI NYLSVCTPTH THFDHIRFGL RNGMHVICEK PLVLDPGEIQ ELKDLEVKHQ KRVFSLLPLR LHCDTLALKE KIKSELDKNP SKVFDITLTY ISVQGKWYFS SWRADVNRSG GLATQMGVNI FDTLIYLFGS VKDKVINKEE PDCVGGILFL EHAKIRWFFS INPEHMGVAK EKVYHKMILE GEEVNLTQSF DNLYIESYKQ ILAQGGFGLD DAMASVKLA // ID O24868_HELPY Unreviewed; 39 AA. AC O24868; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07095.1}; GN OrderedLocusNames=HP_0023 {ECO:0000313|EMBL:AAD07095.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07095.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07095.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07095.1; -; Genomic_DNA. DR PIR; G64522; G64522. DR RefSeq; WP_010875434.1; NC_018939.1. DR ProteinModelPortal; O24868; -. DR STRING; 85962.HP0023; -. DR PaxDb; O24868; -. DR PRIDE; O24868; -. DR EnsemblBacteria; AAD07095; AAD07095; HP_0023. DR PATRIC; 20591241; VBIHelPyl33062_0022. DR BioCyc; HPY:HP0023-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 39 AA; 4712 MW; E693EBC91CFBC448 CRC64; MVYLKWKVLF LGWLHLRALK RVGCRISSRL IVRIWGKSK // ID O26007_HELPY Unreviewed; 679 AA. AC O26007; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 87. DE SubName: Full=Type IIS restriction enzyme M protein (Mod) {ECO:0000313|EMBL:AAD08512.1}; GN OrderedLocusNames=HP_1472 {ECO:0000313|EMBL:AAD08512.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08512.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08512.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08512.1; -; Genomic_DNA. DR PIR; H64703; H64703. DR RefSeq; NP_208263.1; NC_000915.1. DR RefSeq; WP_001045361.1; NC_018939.1. DR ProteinModelPortal; O26007; -. DR DIP; DIP-3648N; -. DR IntAct; O26007; 3. DR MINT; MINT-178286; -. DR STRING; 85962.HP1472; -. DR REBASE; 56818; Hpy26695ORF7620P. DR PaxDb; O26007; -. DR EnsemblBacteria; AAD08512; AAD08512; HP_1472. DR GeneID; 899820; -. DR KEGG; heo:C694_07620; -. DR KEGG; hpy:HP1472; -. DR PATRIC; 20594355; VBIHelPyl33062_1546. DR eggNOG; COG0286; LUCA. DR KO; K00571; -. DR OMA; VLNPPYS; -. DR OrthoDB; EOG63FVXR; -. DR BioCyc; HPY:HP1472-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR014883; VRR_NUC. DR Pfam; PF02384; N6_Mtase; 1. DR Pfam; PF08774; VRR_NUC; 1. DR SMART; SM00990; VRR_NUC; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 115 VRR-NUC. {ECO:0000259|SMART:SM00990}. FT COILED 12 43 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 679 AA; 77050 MW; A39F9DDCD30987E6 CRC64; MNKVQSIDPL IADKFNNELR SYNLEYKLEQ ESLNKEIDEA LKNYASKNGG LGGNRPDVKL LLNTQDPNRR VPILIEYKGL KDKLIKLDKN KLVENFKNHE PHYKNIREYA LNGALHYANA ILHHTSYTEC IAIGITGYKD NKGGICSQIA VYYVNKSNLG MGIDVSKGEQ GYSDLSFLSR KHFNDFIKRV DTLSLSDEDL ERIREKKNQE IEDCLMRLNN NIYNKEKNFL SEHNRVYLVI ASIIANLGIP NLVTPLNKED LKSSDEVHQR DGDIMLRKIQ SFLENKDLSP EKRQSIISSL ETLLRNENNN KATNGESCLK RCFSEIVDSL GIYYKIGLST DFTGKLFNEM YRWLGFTKDQ LNDVVLTPPY VATLLARLSK VNKDSFVWDF ATGSAGLLVA SMNLMIEDAK KRITSPEELE QKIAHIKAKQ LLGIEILSDI HTLAVLNMIL MGDGSSQILN QDGLSGFDGK VNNEAFKANA FVLNPPYSAS GNGMVFVEQA LEKMQSGYAS VIIQSSAGSG KAKEYNVRIL EKHTLLASIK MPLDLFIGKS SVQTHIYVFR VNEKHDAKQR VKFINFSNDG YARANRKKAK ASHNLKDTHN AKERYNEVVD LVHIGQSCLK FLSEDDYYEN TIDPKNGSDW NQNKPTDTKP ELEDFKRTIA DYLSYEVSLI LKNQMPPKR // ID O25757_HELPY Unreviewed; 144 AA. AC O25757; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE SubName: Full=ATP synthase F0, subunit b' (AtpF') {ECO:0000313|EMBL:AAD08179.1}; GN OrderedLocusNames=HP_1137 {ECO:0000313|EMBL:AAD08179.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08179.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08179.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the ATPase B chain family. CC {ECO:0000256|RuleBase:RU003848}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08179.1; -; Genomic_DNA. DR PIR; A64662; A64662. DR RefSeq; NP_207928.1; NC_000915.1. DR RefSeq; WP_001027591.1; NC_000915.1. DR ProteinModelPortal; O25757; -. DR IntAct; O25757; 1. DR STRING; 85962.HP1137; -. DR PaxDb; O25757; -. DR EnsemblBacteria; AAD08179; AAD08179; HP_1137. DR GeneID; 899674; -. DR KEGG; heo:C694_05865; -. DR KEGG; hpy:HP1137; -. DR PATRIC; 20593619; VBIHelPyl33062_1189. DR eggNOG; ENOG4105WRM; Bacteria. DR eggNOG; COG0711; LUCA. DR KO; K02109; -. DR OMA; YQEIETI; -. DR OrthoDB; EOG67Q9CG; -. DR BioCyc; HPY:HP1137-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW. DR GO; GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro. DR InterPro; IPR002146; ATPase_F0-cplx_b/b'su_bac. DR Pfam; PF00430; ATP-synt_B; 1. PE 3: Inferred from homology; KW CF(0) {ECO:0000256|RuleBase:RU003848}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrogen ion transport {ECO:0000256|RuleBase:RU003848}; KW Ion transport {ECO:0000256|RuleBase:RU003848}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003848}. FT TRANSMEM 6 29 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 69 122 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 144 AA; 16497 MW; D351321DFC5A4209 CRC64; MNISVNPYLM AVVFVVFVLL LWAMNVWVYR PLLAFMDNRQ AEIKDSLAKI KTDNAQSVEI GHQIEALLKE AAEKRREIIA EAIQKATESY DAVIKQKENE LNQEFEAFAK QLQNEKQALK EQLQAQMPVF EDELNKRVAM GLGS // ID P96541_HELPY Unreviewed; 115 AA. AC P96541; DT 01-MAY-1997, integrated into UniProtKB/TrEMBL. DT 01-MAY-1997, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07529.1}; GN OrderedLocusNames=HP_0467 {ECO:0000313|EMBL:AAD07529.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07529.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07529.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07529.1; -; Genomic_DNA. DR PIR; C64578; C64578. DR RefSeq; NP_207265.1; NC_000915.1. DR RefSeq; WP_001220151.1; NC_000915.1. DR ProteinModelPortal; P96541; -. DR IntAct; P96541; 2. DR STRING; 85962.HP0467; -. DR PaxDb; P96541; -. DR PRIDE; P96541; -. DR EnsemblBacteria; AAD07529; AAD07529; HP_0467. DR GeneID; 898805; -. DR KEGG; hpy:HP0467; -. DR PATRIC; 20592205; VBIHelPyl33062_0491. DR eggNOG; ENOG41073XF; Bacteria. DR eggNOG; ENOG410Z3E7; LUCA. DR OMA; NGEGSEM; -. DR OrthoDB; EOG6C2WJV; -. DR BioCyc; HPY:HP0467-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 56 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 90 115 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 115 AA; 13848 MW; 7D4D4EB85FF513C0 CRC64; MRIIIRLLSF KMNAFLKLAL ASLMGGLWYA FNGEGSEIVA IGIFVLILFV FFIRPVSFQD PEKREEYIER LKKNHERKMI LQDKQKEEQM RLYQAKKERE SRQKQDLKEQ MKKYS // ID O26069_HELPY Unreviewed; 308 AA. AC O26069; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=ToxR-activated gene (TagE) {ECO:0000313|EMBL:AAD08583.1}; GN OrderedLocusNames=HP_1544 {ECO:0000313|EMBL:AAD08583.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08583.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08583.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08583.1; -; Genomic_DNA. DR PIR; H64712; H64712. DR RefSeq; NP_208335.1; NC_000915.1. DR RefSeq; WP_001136019.1; NC_018939.1. DR ProteinModelPortal; O26069; -. DR DIP; DIP-3645N; -. DR IntAct; O26069; 3. DR MINT; MINT-161790; -. DR STRING; 85962.HP1544; -. DR PaxDb; O26069; -. DR EnsemblBacteria; AAD08583; AAD08583; HP_1544. DR GeneID; 899747; -. DR KEGG; heo:C694_08000; -. DR KEGG; hpy:HP1544; -. DR PATRIC; 20594511; VBIHelPyl33062_1623. DR eggNOG; ENOG4105DR5; Bacteria. DR eggNOG; COG0739; LUCA. DR OMA; ELFIVGQ; -. DR OrthoDB; EOG62NX36; -. DR BioCyc; HPY:HP1544-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011055; Dup_hybrid_motif. DR InterPro; IPR016047; Peptidase_M23. DR Pfam; PF01551; Peptidase_M23; 1. DR SUPFAM; SSF51261; SSF51261; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 51 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 165 256 Peptidase_M23. FT {ECO:0000259|Pfam:PF01551}. SQ SEQUENCE 308 AA; 34925 MW; 6B83C554C0B5D1C4 CRC64; MPQNQLVITI IDESGSKQLK FSKNLKRNLI ISVVIFLLIV GLGVGFLKFL IAKMDTMTAE RNAVLRDFRD LYQKNYTLTK EIKNKREELF IVGQKIRTIE SLIEVKRGAN GGVHLYDEVD LDNLNLAQKH LALMLIPNGM PIKTYSAIKP TKERNHPIKK IKGVESGIDF IAPLNTPVYA SADGIVDFVK TNSNVGYGNL VRIEHAFGFS SIYTHLDHVN VQPKSFIQKG QLIGYSGKSG NSGGEKLHYE VRFLGKILDA QKFLAWDLDH FQSALEENKF IEWKNLFWVL EDIVQLQEHV DKDALISQ // ID O25747_HELPY Unreviewed; 76 AA. AC O25747; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08180.1}; GN OrderedLocusNames=HP_1122 {ECO:0000313|EMBL:AAD08180.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08180.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08180.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O06758:flhA; NbExp=2; IntAct=EBI-527952, EBI-6407872; CC O25676:HP_1032; NbExp=3; IntAct=EBI-527952, EBI-527933; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08180.1; -; Genomic_DNA. DR PIR; B64660; B64660. DR RefSeq; NP_207913.1; NC_000915.1. DR RefSeq; WP_001022303.1; NC_000915.1. DR ProteinModelPortal; O25747; -. DR DIP; DIP-3624N; -. DR IntAct; O25747; 6. DR MINT; MINT-169688; -. DR STRING; 85962.HP1122; -. DR PaxDb; O25747; -. DR PRIDE; O25747; -. DR EnsemblBacteria; AAD08180; AAD08180; HP_1122. DR GeneID; 899659; -. DR KEGG; hpy:HP1122; -. DR PATRIC; 20593587; VBIHelPyl33062_1173. DR OMA; KDFTMIN; -. DR OrthoDB; EOG6WMJ6B; -. DR BioCyc; HPY:HP1122-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR007412; FlgM. DR InterPro; IPR031316; FlgM_C. DR Pfam; PF04316; FlgM; 1. DR SUPFAM; SSF101498; SSF101498; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 38 69 FlgM. {ECO:0000259|Pfam:PF04316}. SQ SEQUENCE 76 AA; 8599 MW; EC9AA7DE666D7904 CRC64; MNIKLKDFTM INAVSSLAPV QSLGNYKRVE KNEKVENNEA ALDRVAEIKK AIENNQYKIN LHETSHKMAK DLLGIS // ID O25482_HELPY Unreviewed; 74 AA. AC O25482; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Molybdopterin converting factor, subunit 1 (MoaD) {ECO:0000313|EMBL:AAD07857.1}; GN OrderedLocusNames=HP_0801 {ECO:0000313|EMBL:AAD07857.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07857.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07857.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3RPF} RP X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS). RA Nocek B., Stein A., Marshall N., Jedrzejczak R., Babnigg G., RA Joachimiak A.; RT "Protein-protein complex of subunit 1 and 2 of Molybdopterin- RT converting factor from Helicobacter pylori 26695."; RL Submitted (APR-2011) to the PDB data bank. CC -!- INTERACTION: CC P56422:moaE; NbExp=3; IntAct=EBI-7674271, EBI-7674385; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07857.1; -; Genomic_DNA. DR PIR; A64620; A64620. DR RefSeq; NP_207594.1; NC_000915.1. DR RefSeq; WP_010875547.1; NC_000915.1. DR PDB; 3RPF; X-ray; 1.90 A; C/D=1-74. DR PDBsum; 3RPF; -. DR ProteinModelPortal; O25482; -. DR DIP; DIP-3524N; -. DR IntAct; O25482; 3. DR MINT; MINT-169562; -. DR STRING; 85962.HP0801; -. DR PaxDb; O25482; -. DR PRIDE; O25482; -. DR DNASU; 899069; -. DR EnsemblBacteria; AAD07857; AAD07857; HP_0801. DR GeneID; 899069; -. DR KEGG; hpy:HP0801; -. DR PATRIC; 20592889; VBIHelPyl33062_0833. DR eggNOG; ENOG4105XWH; Bacteria. DR eggNOG; COG1977; LUCA. DR KO; K03636; -. DR OMA; WLGVCAI; -. DR OrthoDB; EOG6KMBD9; -. DR BioCyc; HPY:HP0801-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR016155; Mopterin_synth/thiamin_S_b. DR InterPro; IPR003749; ThiS/MoaD. DR Pfam; PF02597; ThiS; 1. DR SUPFAM; SSF54285; SSF54285; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3RPF}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 74 AA; 8281 MW; 123C739C09FFB67C CRC64; MMVEVRFFGP IKEENFFIKA NDLKELRAIL QEKEGLKEWL GVCAIALNDH LIDNLNTPLK DGDVISLLPP VCGG // ID O26030_HELPY Unreviewed; 23 AA. AC O26030; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08548.1}; GN OrderedLocusNames=HP_1500 {ECO:0000313|EMBL:AAD08548.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08548.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08548.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08548.1; -; Genomic_DNA. DR PIR; D64707; D64707. DR RefSeq; WP_010875632.1; NC_018939.1. DR STRING; 85962.HP1500; -. DR PaxDb; O26030; -. DR PRIDE; O26030; -. DR EnsemblBacteria; AAD08548; AAD08548; HP_1500. DR BioCyc; HPY:HP1500-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 23 AA; 2606 MW; 17628564FD20931C CRC64; MCSNSSSLKI YSLESNFSFN SLF // ID O25334_HELPY Unreviewed; 233 AA. AC O25334; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 108. DE SubName: Full=ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAD07676.1}; GN OrderedLocusNames=HP_0613 {ECO:0000313|EMBL:AAD07676.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07676.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07676.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07676.1; -; Genomic_DNA. DR PIR; E64596; E64596. DR RefSeq; NP_207408.1; NC_000915.1. DR RefSeq; WP_000625017.1; NC_018939.1. DR ProteinModelPortal; O25334; -. DR DIP; DIP-3375N; -. DR IntAct; O25334; 1. DR MINT; MINT-180377; -. DR STRING; 85962.HP0613; -. DR PaxDb; O25334; -. DR EnsemblBacteria; AAD07676; AAD07676; HP_0613. DR GeneID; 900003; -. DR KEGG; heo:C694_03170; -. DR KEGG; hpy:HP0613; -. DR PATRIC; 20592505; VBIHelPyl33062_0641. DR eggNOG; COG1131; LUCA. DR OMA; NFSFKNH; -. DR OrthoDB; EOG6B09RZ; -. DR BioCyc; HPY:HP0613-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD07676.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD07676.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 220 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 233 AA; 26596 MW; 295AEC3869AAA667 CRC64; MISNISIHPK TMFKNALNIQ DFSFKSHTST AIIGTNGAGK STLINTILGI RSDYNFKAQN NNIPYHDNVI PQRKQLGVVS NLFNYPPRLN ANDLFKFYQF FHKNCTPNLF EKNLLNKTYE HLSDGQKQRL KIDLALSHHP QLIIMDEPET SLEQNALIRL SNLISLRNTQ QLTSIIATHD LIVLDSCEWV LFLKNGNIAQ YKPLNSILKS VAKTFNFKEK PTTKDLLALL KDI // ID O25107_HELPY Unreviewed; 88 AA. AC O25107; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07412.1}; GN OrderedLocusNames=HP_0340 {ECO:0000313|EMBL:AAD07412.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07412.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07412.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07412.1; -; Genomic_DNA. DR PIR; D64562; D64562. DR RefSeq; NP_207138.1; NC_000915.1. DR RefSeq; WP_001862993.1; NC_018939.1. DR ProteinModelPortal; O25107; -. DR DIP; DIP-3383N; -. DR IntAct; O25107; 14. DR MINT; MINT-159417; -. DR STRING; 85962.HP0340; -. DR PaxDb; O25107; -. DR EnsemblBacteria; AAD07412; AAD07412; HP_0340. DR GeneID; 899211; -. DR KEGG; heo:C694_01725; -. DR KEGG; hpy:HP0340; -. DR PATRIC; 20591915; VBIHelPyl33062_0354. DR OMA; IFILMRT; -. DR OrthoDB; EOG69D3FR; -. DR BioCyc; HPY:HP0340-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 88 AA; 10319 MW; 0541500EE040862F CRC64; MEILKLEGCE KHCKKKYAIE KVIKEVGLEL KSKSVMPYFF NEYDLTKNAN RKEPERLRSQ IISILMKTPK GREILKEYLN EGCILLGE // ID O25105_HELPY Unreviewed; 188 AA. AC O25105; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07410.1}; GN OrderedLocusNames=HP_0338 {ECO:0000313|EMBL:AAD07410.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07410.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07410.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07410.1; -; Genomic_DNA. DR PIR; B64562; B64562. DR RefSeq; NP_207136.1; NC_000915.1. DR RefSeq; WP_000032376.1; NC_018939.1. DR ProteinModelPortal; O25105; -. DR DIP; DIP-3338N; -. DR IntAct; O25105; 4. DR MINT; MINT-180968; -. DR STRING; 85962.HP0338; -. DR PaxDb; O25105; -. DR DNASU; 898809; -. DR EnsemblBacteria; AAD07410; AAD07410; HP_0338. DR GeneID; 898809; -. DR KEGG; heo:C694_01715; -. DR KEGG; hpy:HP0338; -. DR PATRIC; 20591911; VBIHelPyl33062_0352. DR OMA; SEKNERW; -. DR OrthoDB; EOG6XSZV4; -. DR BioCyc; HPY:HP0338-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 31 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 76 94 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 188 AA; 21978 MW; F6013B9EE645E62B CRC64; MSKENSVISG LMNFFSEKNE RWLLAHRHTR GFVIVAWLFR FKSIAFSILI TLLVIWVDIW VYSDVRQFLL DTSSSFVWLL SALLIKWGVI VFSARKCYKF SQKMFALIQK KRQIRENLKN RPNPLDTKNS PKERLSSVTE EIISKKQEEL QSKETPEGKH DGERLSSVTE EIISKKLEEL KAKNNKGN // ID O25548_HELPY Unreviewed; 31 AA. AC O25548; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07930.1}; GN OrderedLocusNames=HP_0881 {ECO:0000313|EMBL:AAD07930.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07930.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07930.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07930.1; -; Genomic_DNA. DR PIR; A64630; A64630. DR RefSeq; NP_207675.1; NC_000915.1. DR RefSeq; WP_000512315.1; NC_018939.1. DR ProteinModelPortal; O25548; -. DR PaxDb; O25548; -. DR EnsemblBacteria; AAD07930; AAD07930; HP_0881. DR GeneID; 899410; -. DR KEGG; heo:C694_04510; -. DR KEGG; hpy:HP0881; -. DR BioCyc; HPY:HP0881-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 31 AA; 3537 MW; DDFB4B1FC64723F1 CRC64; MGIMQKVGLI LMIIFSFAMS NDKKPPIDIE R // ID O25672_HELPY Unreviewed; 165 AA. AC O25672; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08083.1}; GN OrderedLocusNames=HP_1028 {ECO:0000313|EMBL:AAD08083.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08083.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08083.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08083.1; -; Genomic_DNA. DR PIR; D64648; D64648. DR RefSeq; NP_207818.1; NC_000915.1. DR RefSeq; WP_001241701.1; NC_018939.1. DR ProteinModelPortal; O25672; -. DR STRING; 85962.HP1028; -. DR PaxDb; O25672; -. DR EnsemblBacteria; AAD08083; AAD08083; HP_1028. DR GeneID; 899563; -. DR KEGG; heo:C694_05320; -. DR KEGG; hpy:HP1028; -. DR PATRIC; 20593393; VBIHelPyl33062_1077. DR eggNOG; COG4731; LUCA. DR OMA; LYIKSSF; -. DR OrthoDB; EOG6X10XC; -. DR BioCyc; HPY:HP1028-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR019223; DUF2147. DR Pfam; PF09917; DUF2147; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 21 137 DUF2147. {ECO:0000259|Pfam:PF09917}. SQ SEQUENCE 165 AA; 19212 MW; DE9BDEBAF4C8BCF4 CRC64; MRLVSLVIVF CCFLRAVELP GIYQTQEFLY MKSSFVEFFE HNGKFYAYGI SDVDGSKARK DKLNPNPKLR NRSDKGVVFL SDLIKVGKRS YKGGKAYNFY DGKTYYVRVT QNSNGDLEFT SSYDKWGYVG KTFTWKRLSD EEIKNLKLKR FNLDEVLKTI KDSPI // ID O25437_HELPY Unreviewed; 158 AA. AC O25437; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 86. DE RecName: Full=Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; DE EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162}; DE AltName: Full=Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; GN OrderedLocusNames=HP_0737 {ECO:0000313|EMBL:AAD07783.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07783.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07783.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: Lipid phosphatase which dephosphorylates CC phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). CC {ECO:0000256|PIRNR:PIRNR006162}. CC -!- CATALYTIC ACTIVITY: Phosphatidylglycerophosphate + H(2)O = CC phosphatidylglycerol + phosphate. {ECO:0000256|PIRNR:PIRNR006162}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|PIRNR:PIRNR006162}; CC -!- PATHWAY: Phospholipid metabolism; phosphatidylglycerol CC biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step CC 2/2. {ECO:0000256|PIRNR:PIRNR006162}. CC -!- SUBCELLULAR LOCATION: Cell inner membrane CC {ECO:0000256|PIRNR:PIRNR006162}; Multi-pass membrane protein CC {ECO:0000256|PIRNR:PIRNR006162}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07783.1; -; Genomic_DNA. DR PIR; A64612; A64612. DR RefSeq; NP_207531.1; NC_000915.1. DR RefSeq; WP_000357337.1; NC_018939.1. DR ProteinModelPortal; O25437; -. DR STRING; 85962.HP0737; -. DR PaxDb; O25437; -. DR EnsemblBacteria; AAD07783; AAD07783; HP_0737. DR GeneID; 899327; -. DR KEGG; heo:C694_03785; -. DR KEGG; hpy:HP0737; -. DR PATRIC; 20592761; VBIHelPyl33062_0769. DR eggNOG; ENOG4108ZAI; Bacteria. DR eggNOG; COG1267; LUCA. DR KO; K01095; -. DR OMA; GYSKKAP; -. DR OrthoDB; EOG6P5ZM2; -. DR BioCyc; HPY:HP0737-MONOMER; -. DR UniPathway; UPA00084; UER00504. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008962; F:phosphatidylglycerophosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0006655; P:phosphatidylglycerol biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009395; P:phospholipid catabolic process; IEA:UniProtKB-KW. DR Gene3D; 1.10.3760.10; -; 1. DR InterPro; IPR026037; PgpA. DR InterPro; IPR027416; YutG-like. DR InterPro; IPR007686; YutG/PgpA. DR Pfam; PF04608; PgpA; 1. DR PIRSF; PIRSF006162; PgpA; 1. DR SUPFAM; SSF101307; SSF101307; 1. PE 4: Predicted; KW Cell inner membrane {ECO:0000256|PIRNR:PIRNR006162}; KW Cell membrane {ECO:0000256|PIRNR:PIRNR006162}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|PIRNR:PIRNR006162}; KW Lipid degradation {ECO:0000256|PIRNR:PIRNR006162}; KW Lipid metabolism {ECO:0000256|PIRNR:PIRNR006162}; KW Magnesium {ECO:0000256|PIRNR:PIRNR006162}; KW Membrane {ECO:0000256|PIRNR:PIRNR006162, ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|PIRNR:PIRNR006162}; KW Phospholipid degradation {ECO:0000256|PIRNR:PIRNR006162}; KW Phospholipid metabolism {ECO:0000256|PIRNR:PIRNR006162}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 61 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 105 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 156 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 9 146 PgpA. {ECO:0000259|Pfam:PF04608}. SQ SEQUENCE 158 AA; 16909 MW; 857C84C2364C3ABC CRC64; MDKFSLRACF LTLFFSGYSK KAPGTIGSLV ALLLGLPVLI FSANTLFLGA VFVGLIAIAQ IDKEEEETKR HDSSYIVIDE LVGMWLAMAI SGLSLAGVIL SFIFFRIYDI TKPSLIGKID KEVKGGLGVV ADDALAGVLA GLSALLVIHI LGFFNIKL // ID O25707_HELPY Unreviewed; 262 AA. AC O25707; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08122.1}; GN OrderedLocusNames=HP_1074 {ECO:0000313|EMBL:AAD08122.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08122.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08122.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08122.1; -; Genomic_DNA. DR PIR; B64654; B64654. DR RefSeq; NP_207865.1; NC_000915.1. DR RefSeq; WP_001862769.1; NC_018939.1. DR ProteinModelPortal; O25707; -. DR DIP; DIP-3641N; -. DR IntAct; O25707; 10. DR MINT; MINT-162871; -. DR STRING; 85962.HP1074; -. DR PaxDb; O25707; -. DR EnsemblBacteria; AAD08122; AAD08122; HP_1074. DR GeneID; 899610; -. DR KEGG; heo:C694_05550; -. DR KEGG; hpy:HP1074; -. DR PATRIC; 20593487; VBIHelPyl33062_1123. DR OMA; ANYNHAS; -. DR OrthoDB; EOG6XHC2X; -. DR BioCyc; HPY:HP1074-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 3 30 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 262 AA; 31440 MW; 4554800980291D16 CRC64; MGIKEKEIEL ETLKREIAQA EASLEQDFIK YMVDKTNEKV EDLFFSNKPE FYRFVFTEQN NYLREKLTDK VGRAMDLSDE IQRDKTENES LENGTKFKKR FVFELQNDLI FLRTKRNTYS AKTEHENFQE RLLAAKDTFR LIKANDFKTK IYPYQITLRL KTKHIIVFRW LKKEIIKRFV KKDLFTETLS IKITDKKGQK YALIANYNHA SDIIELMLDD KTYTTTLYYQ KPLFDLIKNS NFNLTIKDNT LEINQAKKRL FV // ID O24946_HELPY Unreviewed; 413 AA. AC O24946; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Serine transporter (SdaC) {ECO:0000313|EMBL:AAD07203.1}; GN OrderedLocusNames=HP_0133 {ECO:0000313|EMBL:AAD07203.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07203.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07203.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07203.1; -; Genomic_DNA. DR PIR; E64536; E64536. DR RefSeq; NP_206933.1; NC_000915.1. DR RefSeq; WP_000046401.1; NC_018939.1. DR ProteinModelPortal; O24946; -. DR STRING; 85962.HP0133; -. DR PaxDb; O24946; -. DR EnsemblBacteria; AAD07203; AAD07203; HP_0133. DR GeneID; 899129; -. DR KEGG; heo:C694_00655; -. DR KEGG; hpy:HP0133; -. DR PATRIC; 20591483; VBIHelPyl33062_0141. DR eggNOG; ENOG4105C44; Bacteria. DR eggNOG; COG0814; LUCA. DR KO; K03837; -. DR OMA; RICNALV; -. DR OrthoDB; EOG6X10TH; -. DR BioCyc; HPY:HP0133-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0003333; P:amino acid transmembrane transport; IEA:InterPro. DR InterPro; IPR004694; Hydroxy_aa_transpt. DR InterPro; IPR018227; Tryptophan/tyrosine_permease. DR Pfam; PF03222; Trp_Tyr_perm; 1. DR TIGRFAMs; TIGR00814; stp; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 91 114 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 155 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 183 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 219 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 240 261 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 288 312 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 333 351 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 363 383 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 395 412 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 413 AA; 46243 MW; 5CF48127CE3F403F CRC64; MAQEKAVPRD PKKLNAFDLR WMVSLFGTAV GAGILFLPIR AGGHGVWAIV VMSAIIFPLT YLGHRALAYF IGSKDKEDIT MVVRSHFGAQ WGFLITLLYF LAIYPICLVY GVGITNVFDH FFTNQLHLAP FHRGLLAVAL VSLMMLVMVF NATIVTRICN ALVYPLCLIL LLFSLYLIPY WQGANLFVVP SFKEFVLAIW LTLPVLVFAF DHSPIISTFT QNVGKEYGVF KEYKLNQIEL GTSLMLLGFV MFFVFSCVMC LNADDFVKAR EQNIPILSYL ANTLNNPLIN YAGPVVAFLA IFSSFFGHYY GAKEGLEGII IQSLKLKKAS KPLSVSVTIF LWLTITLVAY INPNILDFIE NLGGPIIALI LFVMPMIAFY SVSSLKRFRN FKVDIFVFVF GSLTALSVFL GLF // ID O24888_HELPY Unreviewed; 332 AA. AC O24888; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Hydrogenase expression/formation protein (HypE) {ECO:0000313|EMBL:AAD07114.1}; GN OrderedLocusNames=HP_0047 {ECO:0000313|EMBL:AAD07114.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07114.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07114.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07114.1; -; Genomic_DNA. DR PIR; G64525; G64525. DR RefSeq; NP_206848.1; NC_000915.1. DR RefSeq; WP_000378843.1; NC_018939.1. DR ProteinModelPortal; O24888; -. DR DIP; DIP-3120N; -. DR IntAct; O24888; 2. DR MINT; MINT-167885; -. DR STRING; 85962.HP0047; -. DR PaxDb; O24888; -. DR EnsemblBacteria; AAD07114; AAD07114; HP_0047. DR GeneID; 899168; -. DR KEGG; heo:C694_00215; -. DR KEGG; hpy:HP0047; -. DR PATRIC; 20591293; VBIHelPyl33062_0048. DR eggNOG; ENOG4105C45; Bacteria. DR eggNOG; COG0309; LUCA. DR KO; K04655; -. DR OMA; DPIPRVC; -. DR OrthoDB; EOG6BW4W5; -. DR BioCyc; HPY:HP0047-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.1330.10; -; 1. DR Gene3D; 3.90.650.10; -; 1. DR InterPro; IPR010918; AIR_synth_C_dom. DR InterPro; IPR011854; HypE. DR InterPro; IPR016188; PurM-like_N. DR Pfam; PF00586; AIRS; 1. DR Pfam; PF02769; AIRS_C; 1. DR PIRSF; PIRSF005644; Hdrgns_mtr_HypE; 1. DR SUPFAM; SSF56042; SSF56042; 1. DR TIGRFAMs; TIGR02124; hypE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 48 146 AIRS. {ECO:0000259|Pfam:PF00586}. FT DOMAIN 158 309 AIRS_C. {ECO:0000259|Pfam:PF02769}. SQ SEQUENCE 332 AA; 36405 MW; 7762E5F0E9681FAC CRC64; MDSVTLACGN GGKETNALIE RVFMPYLKEW IVAFDEDAPK FEASGEYCVS TDSFVITPLI FNGGDIGKLC VCGSANDVSV QGGEPLYLNM GFILEEGLEI SLLKQILQSI QKELFKANLK LLSLDTKVVP KGSVDKLFIN TTCIGKIIKP GISSYHLQQG QAIILSDTIA NHGASLFAMR NEIKLKTNLE SDCQLLYPLL KPLFLSDLKI DALRDATRGG LASVLNEWAN SSRVKIVIEE EKIPLKEETK GICEILGLEP YALANEGVFV LALNQKDAPK ALEILKSNEK AKNACVIGKV FENPYPSVVL KNAWGFERIL EVPEGELLPR IC // ID O25473_HELPY Unreviewed; 44 AA. AC O25473; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07837.1}; GN OrderedLocusNames=HP_0784 {ECO:0000313|EMBL:AAD07837.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07837.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07837.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07837.1; -; Genomic_DNA. DR PIR; H64617; H64617. DR RefSeq; WP_010875546.1; NC_018939.1. DR ProteinModelPortal; O25473; -. DR STRING; 85962.HP0784; -. DR PaxDb; O25473; -. DR PRIDE; O25473; -. DR EnsemblBacteria; AAD07837; AAD07837; HP_0784. DR OrthoDB; EOG6CVVJS; -. DR BioCyc; HPY:HP0784-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 44 AA; 4921 MW; 0036A336C1E44C02 CRC64; MLFTVIFVAV LQAALGMLSV RQEICRNPSQ PHNFKVLSIL ANFC // ID O25644_HELPY Unreviewed; 600 AA. AC O25644; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08046.1}; GN OrderedLocusNames=HP_0996 {ECO:0000313|EMBL:AAD08046.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08046.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08046.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08046.1; -; Genomic_DNA. DR PIR; D64644; D64644. DR RefSeq; NP_207787.1; NC_000915.1. DR RefSeq; WP_010875578.1; NC_000915.1. DR ProteinModelPortal; O25644; -. DR DIP; DIP-3237N; -. DR IntAct; O25644; 6. DR MINT; MINT-175438; -. DR STRING; 85962.HP0996; -. DR PaxDb; O25644; -. DR PRIDE; O25644; -. DR EnsemblBacteria; AAD08046; AAD08046; HP_0996. DR GeneID; 899529; -. DR KEGG; hpy:HP0996; -. DR PATRIC; 20593317; VBIHelPyl33062_1040. DR eggNOG; COG3843; LUCA. DR OMA; RSEFAYR; -. DR OrthoDB; EOG6VB6QX; -. DR BioCyc; HPY:HP0996-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 150 177 {ECO:0000256|SAM:Coils}. FT COILED 423 450 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 600 AA; 71435 MW; E0107ABFE8CFC66F CRC64; MKRSHLENAL NYALENSETA YNEMFLECDK QFILESWLND FDLTKDYNET MHLVFSIKDK PDEETMQGLL HSTWESLKIR LPEYKFALVP HAHQDHAHIH CFINKTNQLT RRRLRFKGHE DCKEFFNELR SEFAYRLNDH LLSEEYLYVN EPKLKELDNI KQQLQDLEKE EKALEQIKSP QDEWDLNKAL QSEYLQELKY KNKAKALDIQ NNHSTPLKQK ISEFKIALFN HKDTSDDEKE QLDIDRIDKR KPVSEHLKNT NKHELYELLG FYQKELDKKQ NHSAFKNFAI LNGLDRDFER ETNGYSVLKK KEMLLNKLEH LDKRLLDKNS HLLLAQLRNE VKTKQNIQYN TLTNPILLAK ALELSKDKRP TLKTFKNAYF SARKYQFMLE SFKTKQNDPT YKLNDNTYEL VSKQLQDYQN TMLLLAKERL LFLEQDLKQK EEEFERAKEH YVKSSKHYRE TSLSPKEKQG FLKQIKQFSK ISKDILYTCN EIIGANRFLT HYDNLNLEKV LEHAKDTKLE QKEIQAITKE PNNDEPWIEF GKKEQARAKA HYQAMLEKEK AKELAKQQAN TLHSNELDDD PKAHAGLKQN DNTNFKGRNR // ID O25632_HELPY Unreviewed; 231 AA. AC O25632; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08032.1}; GN OrderedLocusNames=HP_0982 {ECO:0000313|EMBL:AAD08032.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08032.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08032.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08032.1; -; Genomic_DNA. DR PIR; F64642; F64642. DR RefSeq; NP_207773.1; NC_000915.1. DR RefSeq; WP_010875573.1; NC_000915.1. DR ProteinModelPortal; O25632; -. DR STRING; 85962.HP0982; -. DR PaxDb; O25632; -. DR PRIDE; O25632; -. DR EnsemblBacteria; AAD08032; AAD08032; HP_0982. DR GeneID; 899515; -. DR KEGG; hpy:HP0982; -. DR PATRIC; 20593283; VBIHelPyl33062_1023. DR OMA; IAIFIRS; -. DR OrthoDB; EOG6HQSXJ; -. DR BioCyc; HPY:HP0982-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 51 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 207 226 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 231 AA; 25974 MW; CAE96D33D059935E CRC64; MLPQNSGTLK LSLSLLYSKA YKIIKKSAEM NVLIRLCFIF LIGFFGANKT LNATAILSLD FGSFSMPITA NFSDGALNVF KWFEKHPSVG VKVGRLANQD DTIFTLVFIV IVVAIIALIA IFIRSILLNT IFVGSLIGSL WLYMVGFYYF YGVPFLSYLS GCYESFSFSA CYPHSLQLLP TLMQYSPIYS IIKLLAHFNI EITSKIIISL VWVCIGLYFL LLQAFFSLTN Y // ID O25353_HELPY Unreviewed; 92 AA. AC O25353; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07713.1}; GN OrderedLocusNames=HP_0636 {ECO:0000313|EMBL:AAD07713.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07713.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07713.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07713.1; -; Genomic_DNA. DR PIR; D64599; D64599. DR ProteinModelPortal; O25353; -. DR IntAct; O25353; 1. DR STRING; 85962.HP0636; -. DR PaxDb; O25353; -. DR PRIDE; O25353; -. DR EnsemblBacteria; AAD07713; AAD07713; HP_0636. DR PATRIC; 20592557; VBIHelPyl33062_0667. DR OrthoDB; EOG6JHRPN; -. DR BioCyc; HPY:HP0636-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 92 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158021. SQ SEQUENCE 92 AA; 10737 MW; 67831B1B74BD154A CRC64; MRIVRNLFLV SFVAYSSVFA TDLETETKSE KKSSKKFYKF HKNHKNDKKL YDFTKNSGLE GIDLEKSPNL KSHKKSDKKF YKQLAKNNIA EG // ID O25374_HELPY Unreviewed; 338 AA. AC O25374; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07730.1}; GN OrderedLocusNames=HP_0660 {ECO:0000313|EMBL:AAD07730.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07730.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07730.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07730.1; -; Genomic_DNA. DR PIR; D64602; D64602. DR RefSeq; NP_207454.1; NC_000915.1. DR RefSeq; WP_001163504.1; NC_018939.1. DR ProteinModelPortal; O25374; -. DR IntAct; O25374; 3. DR MINT; MINT-161158; -. DR STRING; 85962.HP0660; -. DR PaxDb; O25374; -. DR EnsemblBacteria; AAD07730; AAD07730; HP_0660. DR GeneID; 900237; -. DR KEGG; heo:C694_03415; -. DR KEGG; hpy:HP0660; -. DR PATRIC; 20592605; VBIHelPyl33062_0691. DR OMA; ALETLEC; -. DR OrthoDB; EOG6PP9JK; -. DR BioCyc; HPY:HP0660-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 35 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 105 172 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 338 AA; 39242 MW; A48064BBAD44D28E CRC64; MQHFNFLYKD SLFSIALFTF IIALVILLEQ ARAYFTQKKN KKFLQKFAQN QNAYAGSENL DELLKHAKIS SLMFLARAYS KADVQMSIEI LKGLLNRSLK DEEKIAVLDL LAKNYFSVGY LQKTKDTVKE ILRFSPRNVG ALLKLLHAYE LEKDYSKALE TLECLEELEV VEIETIKNYL YLMHLIENKE DVAKILHVSK ASLDLKKIAL NHLKSHDENL FWQEIDATKR LENVIDLLWD MNIPAFILEK HALLQDIARS QGLLLDNKPC QVFELEVLRA LLNSPIKARL TFEYRCKHCK QIFPFESHRC PVCYQLAFMD MVLKISKESY GSGLNARN // ID O25818_HELPY Unreviewed; 63 AA. AC O25818; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08268.1}; GN OrderedLocusNames=HP_1219 {ECO:0000313|EMBL:AAD08268.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08268.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08268.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08268.1; -; Genomic_DNA. DR PIR; C64672; C64672. DR RefSeq; WP_010875608.1; NC_018939.1. DR RefSeq; YP_009112937.1; NC_000915.1. DR ProteinModelPortal; O25818; -. DR IntAct; O25818; 1. DR STRING; 85962.HP1219; -. DR PaxDb; O25818; -. DR PRIDE; O25818; -. DR EnsemblBacteria; AAD08268; AAD08268; HP_1219. DR GeneID; 22656735; -. DR OMA; FNWRLGV; -. DR OrthoDB; EOG66MQV5; -. DR BioCyc; HPY:HP1219-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 63 AA; 7629 MW; 70FED4509478DDA3 CRC64; MPSHKNHYLS LTYFFNELAI NKKHESSRRC LQLYLNFKEI PCKNIQAIRD SFNWRLGVLR ETD // ID O25172_HELPY Unreviewed; 335 AA. AC O25172; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07489.1}; GN OrderedLocusNames=HP_0418 {ECO:0000313|EMBL:AAD07489.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07489.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07489.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25242:dnaN; NbExp=3; IntAct=EBI-9262675, EBI-7532786; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07489.1; -; Genomic_DNA. DR PIR; B64572; B64572. DR RefSeq; NP_207216.1; NC_000915.1. DR RefSeq; WP_001236552.1; NC_018939.1. DR ProteinModelPortal; O25172; -. DR IntAct; O25172; 1. DR STRING; 85962.HP0418; -. DR PaxDb; O25172; -. DR DNASU; 900077; -. DR EnsemblBacteria; AAD07489; AAD07489; HP_0418. DR GeneID; 900077; -. DR KEGG; heo:C694_02130; -. DR KEGG; hpy:HP0418; -. DR PATRIC; 20592087; VBIHelPyl33062_0433. DR eggNOG; ENOG4105FH8; Bacteria. DR eggNOG; ENOG410ZJ0G; LUCA. DR KO; K01772; -. DR OMA; CKIAFFD; -. DR OrthoDB; EOG6CZQHW; -. DR BioCyc; HPY:HP0418-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 335 AA; 38765 MW; E81737A7F8C1748A CRC64; MRLGVNEAVE LSLGELQNTP SISYFNSIVL SLNKVQKGSL FVAKDHTLIP KALELGAYGI LYTGEYPVSD RDVAWIKLKD IEHSLNHLFK FCLLNERVVG ALLSPIELEI ASKIMVSNFV WCLKESLEDL FIIEGCKIAF FDKLEWLHLF YKQEHLKEDL KESCLIILNQ SFFCSALVYE KQEYEFKMPC IFLGSLKRVI QLCEKLQIEF DLNLLGKKEY PLDHCKPFFV NKNLEIAPYG TTARVIVAET SKELFEMMLQ KAFEILSWGK IVVFCRKNSA AFFKKTNPYF YTTQNNLKEQ LKNLAFNFAF IHGISSHHLE SLLNPPFFKK TPTLW // ID O25718_HELPY Unreviewed; 235 AA. AC O25718; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Hemolysin (Tly) {ECO:0000313|EMBL:AAD08129.1}; GN OrderedLocusNames=HP_1086 {ECO:0000313|EMBL:AAD08129.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08129.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08129.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08129.1; -; Genomic_DNA. DR PIR; F64655; F64655. DR RefSeq; NP_207877.1; NC_000915.1. DR RefSeq; WP_001235220.1; NC_018939.1. DR ProteinModelPortal; O25718; -. DR DIP; DIP-3649N; -. DR IntAct; O25718; 7. DR MINT; MINT-164771; -. DR STRING; 85962.HP1086; -. DR PaxDb; O25718; -. DR EnsemblBacteria; AAD08129; AAD08129; HP_1086. DR GeneID; 899622; -. DR KEGG; heo:C694_05610; -. DR KEGG; hpy:HP1086; -. DR PATRIC; 20593511; VBIHelPyl33062_1135. DR eggNOG; ENOG4105DX0; Bacteria. DR eggNOG; COG1189; LUCA. DR KO; K06442; -. DR OMA; QVLVNKM; -. DR OrthoDB; EOG6VB6ZH; -. DR BioCyc; HPY:HP1086-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR Gene3D; 3.10.290.10; -; 1. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR004538; Haemolysin_A/TlyA. DR InterPro; IPR002877; rRNA_MeTrfase_FtsJ_dom. DR InterPro; IPR002942; S4_RNA-bd. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01728; FtsJ; 1. DR Pfam; PF01479; S4; 1. DR SMART; SM00363; S4; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00478; tly; 1. DR PROSITE; PS50889; S4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 61 S4 RNA-binding. FT {ECO:0000259|PROSITE:PS50889}. SQ SEQUENCE 235 AA; 26643 MW; B1A2363B910B1420 CRC64; MRLDYALFSQ HLVNSREKAK ALVLKNQVLV NKMVVSKPSF IVKENDKIEL IAEKLFVSRA GEKLGAFLET HFVDFKGKVV LDVGASKGGF SQVALLKGAK RVLCVDVGKM QLDESLKQDK RIECYEECDI RGFKTPETID LALCDVSFIS LYYILEAILP LSDEFLTLFK PQFEVGRGIK RNKKGVVVDK EAILNALENF KNHLKTKDFQ ILKIQESLVK GKNGNVEFFI HFKRA // ID O24873_HELPY Unreviewed; 593 AA. AC O24873; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07107.1}; GN OrderedLocusNames=HP_0030 {ECO:0000313|EMBL:AAD07107.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07107.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07107.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07107.1; -; Genomic_DNA. DR PIR; F64523; F64523. DR RefSeq; NP_206832.1; NC_000915.1. DR RefSeq; WP_000926158.1; NC_018939.1. DR ProteinModelPortal; O24873; -. DR DIP; DIP-3499N; -. DR IntAct; O24873; 8. DR MINT; MINT-163255; -. DR STRING; 85962.HP0030; -. DR PaxDb; O24873; -. DR EnsemblBacteria; AAD07107; AAD07107; HP_0030. DR GeneID; 899131; -. DR KEGG; heo:C694_00140; -. DR KEGG; hpy:HP0030; -. DR PATRIC; 20591259; VBIHelPyl33062_0031. DR OMA; MSSDKFV; -. DR OrthoDB; EOG6B35XP; -. DR BioCyc; HPY:HP0030-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 593 AA; 67897 MW; DB969549744EA3BC CRC64; MLLNYDFLEF VDEPKRNTSL TASIDKALAD RKLARQNKPS VRVLGKAMPL SKFLDAVGDE ISRLKYDMSH KTIKGSTIES SNLISIYKKI ASGLPFGTIS AFRPFKDAFY KDFTEKEQNA LIYAYKSGAD PKNADIIAKY WLSQSVDLDP YDPIKVVDFF HPQPENGKET TKFKNYKDRI ENIYATLYNT LGRGYVDKFF KKEATMRDFM SSDKFVERYR YTRKENMART QALKDIMNID RDFIGYIEVL GYWKDNPKDN ILPDKEVSFF VFQNEPSSTF DLKNHLLIWG KQFRQVAICY GGQLIANKNK TYRIDLISCR PDNFGEVWAK FTGIKFSVPS DLPQALTRIN DSVYTFLSRN KEGIGLNKLA LNKVVKTELK ATCMPYDYSK LGIETIGEDI RSNIKALQKM SRGYGHPKEF FLDAMIKKQE NAIKRIEARK CAVSDDFKQG MKRNIKVNNL VKAMRQGKKV SRTLIAKVLA NTIDTDAGYC FISPTDLATQ LGNISPRLSK SIVTAIEQAE GVRLNYALID KITYNSLHNI LSFIFDIDNP LSDQVFERLV IEVPREALKN VKLPQIKNVL TSQIFDGAYH FKS // ID O25218_HELPY Unreviewed; 186 AA. AC O25218; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Outer membrane protein (Omp11) {ECO:0000313|EMBL:AAD07540.1}; GN OrderedLocusNames=HP_0472 {ECO:0000313|EMBL:AAD07540.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07540.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07540.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07540.1; -; Genomic_DNA. DR PIR; H64578; H64578. DR RefSeq; NP_207270.1; NC_000915.1. DR RefSeq; WP_000595790.1; NC_018939.1. DR ProteinModelPortal; O25218; -. DR IntAct; O25218; 1. DR STRING; 85962.HP0472; -. DR PaxDb; O25218; -. DR EnsemblBacteria; AAD07540; AAD07540; HP_0472. DR GeneID; 898831; -. DR KEGG; heo:C694_02420; -. DR KEGG; hpy:HP0472; -. DR PATRIC; 20592215; VBIHelPyl33062_0496. DR OMA; KIACILS; -. DR OrthoDB; EOG64BQ5J; -. DR BioCyc; HPY:HP0472-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 186 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158011. SQ SEQUENCE 186 AA; 20925 MW; 9D1FC4E1D8CF7750 CRC64; MIKRIACILS LSTSLALAGE VNGFFMGAGY QQGRYGPYNS NYSDWRHGND LYGLNFKLGF VGFANKWFGA RVYGFLDWFN TSGTEHTKTN LLTYGGGGDL IVNLIPLDKF ALGLIGGVQL AGNTWMFPYD VNQTRFQFLW NLGGRMRVGD RSAFEAGVKF PMVNQGSKDV GLIRYYSWYV DYVFTF // ID O25259_HELPY Unreviewed; 169 AA. AC O25259; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Cag pathogenicity island protein (Cag4) {ECO:0000313|EMBL:AAD07590.1}; GN OrderedLocusNames=HP_0523 {ECO:0000313|EMBL:AAD07590.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07590.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07590.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07590.1; -; Genomic_DNA. DR PIR; C64585; C64585. DR RefSeq; NP_207319.1; NC_000915.1. DR RefSeq; WP_000462193.1; NC_018939.1. DR ProteinModelPortal; O25259; -. DR STRING; 85962.HP0523; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25259; -. DR EnsemblBacteria; AAD07590; AAD07590; HP_0523. DR GeneID; 900205; -. DR KEGG; heo:C694_02695; -. DR KEGG; hpy:HP0523; -. DR PATRIC; 20592321; VBIHelPyl33062_0549. DR KO; K12089; -. DR OMA; YSMFHIT; -. DR OrthoDB; EOG6FNHNQ; -. DR BioCyc; HPY:HP0523-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008258; Transglycosylase_SLT_dom_1. DR Pfam; PF01464; SLT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 36 148 SLT. {ECO:0000259|Pfam:PF01464}. SQ SEQUENCE 169 AA; 19694 MW; 67990182E4A53FB3 CRC64; MFEKWIGLTL LLNSLAYPCQ KVTISFKQYE NLLHIHQKGC DNEVMCRTLI SIALLESSLG LNNRREKSLK DTSYSMFHIT LNTAKKFYPT YSKTLLKFKL LNDVGFAIQL AKQILKENFD YYKQKHPNKS VYQLVEMAIG AYNGGMKHNP NGAYVKKFRC IYSQVRYNE // ID O25152_HELPY Unreviewed; 165 AA. AC O25152; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Purine-binding chemotaxis protein (CheW) {ECO:0000313|EMBL:AAD07456.1}; GN OrderedLocusNames=HP_0391 {ECO:0000313|EMBL:AAD07456.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07456.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07456.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25153:HP_0392; NbExp=3; IntAct=EBI-7496390, EBI-6410665; CC O25606:HP_0952; NbExp=3; IntAct=EBI-7496390, EBI-9260819; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07456.1; -; Genomic_DNA. DR PIR; G64568; G64568. DR RefSeq; NP_207189.1; NC_000915.1. DR RefSeq; WP_000070768.1; NC_018939.1. DR ProteinModelPortal; O25152; -. DR DIP; DIP-3415N; -. DR IntAct; O25152; 4. DR MINT; MINT-160594; -. DR STRING; 85962.HP0391; -. DR PaxDb; O25152; -. DR DNASU; 900081; -. DR EnsemblBacteria; AAD07456; AAD07456; HP_0391. DR GeneID; 900081; -. DR KEGG; heo:C694_01985; -. DR KEGG; hpy:HP0391; -. DR PATRIC; 20592021; VBIHelPyl33062_0404. DR eggNOG; ENOG4108RD3; Bacteria. DR eggNOG; COG0835; LUCA. DR KO; K03408; -. DR OMA; MEKITLI; -. DR OrthoDB; EOG60CWQ7; -. DR BioCyc; HPY:HP0391-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR InterPro; IPR002545; CheW. DR Pfam; PF01584; CheW; 1. DR SMART; SM00260; CheW; 1. DR SUPFAM; SSF50341; SSF50341; 1. DR PROSITE; PS50851; CHEW; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 27 165 CheW-like. {ECO:0000259|PROSITE:PS50851}. SQ SEQUENCE 165 AA; 18967 MW; 9743BBD172C2F6A5 CRC64; MSNQLKDLFE RQKEASAGSK QEDNEEVLQF IGFIIGDEEY AIPILNILEI VKPIGYTRVP ETPNYVLGVF NLRGNVFPLI SLRLKFGLKA EKQNKDTRYL VVRHNDQIAG FFIDRLTEAI RIKQTDIDPV PETLSDNNNL TYGIGKQNDR LVTILRVEEI LKKDF // ID O24882_HELPY Unreviewed; 123 AA. AC O24882; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07121.1}; GN OrderedLocusNames=HP_0041 {ECO:0000313|EMBL:AAD07121.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07121.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07121.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07121.1; -; Genomic_DNA. DR PIR; A64525; A64525. DR ProteinModelPortal; O24882; -. DR STRING; 85962.HP0041; -. DR PaxDb; O24882; -. DR PRIDE; O24882; -. DR EnsemblBacteria; AAD07121; AAD07121; HP_0041. DR PATRIC; 20591281; VBIHelPyl33062_0042. DR eggNOG; COG2948; LUCA. DR BioCyc; HPY:HP0041-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 123 AA; 13891 MW; 2A8E6D56BE518499 CRC64; MNKWLKGAIV FVGGFATIIT ISLIYHQKPK APLNNQPSLL NDDEVKYPLQ DYTFTQNPQP TNTESSKDAT IKALQEQLKA ALKALNSKEM NHSKEETFKN PPIDLKQTQT PLKKTFLQSN GIY // ID O25814_HELPY Unreviewed; 80 AA. AC O25814; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08265.1}; GN OrderedLocusNames=HP_1215 {ECO:0000313|EMBL:AAD08265.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08265.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08265.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08265.1; -; Genomic_DNA. DR ProteinModelPortal; O25814; -. DR IntAct; O25814; 1. DR STRING; 85962.HP1215; -. DR PaxDb; O25814; -. DR PRIDE; O25814; -. DR EnsemblBacteria; AAD08265; AAD08265; HP_1215. DR PATRIC; 20593803; VBIHelPyl33062_1272. DR eggNOG; COG1452; LUCA. DR BioCyc; HPY:HP1215-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 80 AA; 9381 MW; 447E3217449BCA8D CRC64; MSADVGYDIR NNVVLNWNVG IYKKIRCFGI GFQFVNQRRP ILTGDPNQPI RVFENNYVKL ELDFSPITKT NVTYRSLQRK // ID O25319_HELPY Unreviewed; 659 AA. AC O25319; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Penicillin-binding protein 1A (PBP-1A) {ECO:0000313|EMBL:AAD07660.1}; GN OrderedLocusNames=HP_0597 {ECO:0000313|EMBL:AAD07660.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07660.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07660.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07660.1; -; Genomic_DNA. DR PIR; E64594; E64594. DR RefSeq; NP_207392.1; NC_000915.1. DR RefSeq; WP_000913670.1; NC_018939.1. DR ProteinModelPortal; O25319; -. DR STRING; 85962.HP0597; -. DR CAZy; GT51; Glycosyltransferase Family 51. DR PaxDb; O25319; -. DR EnsemblBacteria; AAD07660; AAD07660; HP_0597. DR GeneID; 899972; -. DR KEGG; heo:C694_03085; -. DR KEGG; hpy:HP0597; -. DR PATRIC; 20592473; VBIHelPyl33062_0625. DR eggNOG; ENOG4105BZ4; Bacteria. DR eggNOG; COG0744; LUCA. DR KO; K05366; -. DR OMA; IAQVWVT; -. DR OrthoDB; EOG6HMXCD; -. DR BioCyc; HPY:HP0597-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008658; F:penicillin binding; IEA:InterPro. DR Gene3D; 3.40.710.10; -; 1. DR InterPro; IPR012338; Beta-lactam/transpept-like. DR InterPro; IPR001264; Glyco_trans_51. DR InterPro; IPR023346; Lysozyme-like_dom. DR InterPro; IPR001460; PCN-bd_Tpept. DR Pfam; PF00912; Transgly; 1. DR Pfam; PF00905; Transpeptidase; 1. DR SUPFAM; SSF53955; SSF53955; 1. DR SUPFAM; SSF56601; SSF56601; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 54 229 Transgly. {ECO:0000259|Pfam:PF00912}. FT DOMAIN 331 603 Transpeptidase. FT {ECO:0000259|Pfam:PF00905}. SQ SEQUENCE 659 AA; 74269 MW; E03A7C75E9E141DA CRC64; MLKKIFYGFI VLFLIVMGLL AILIAQVWVT TDKDIAKIKD YRPGVASQIL DRKGRLIANI YDKEFRFYAR FEEIPPRFIE SLLAVEDTLF FEHGGINLDA IMRAMIKNAK SGRYTEGGST LTQQFVKNMV LTREKTLTRK LKEAIISIRI EKVLSKEEIL ERYLNQTFFG HGYYGVKTAS LGYFKKPLDK LTLKEITMLV ALPRAPSFYD PTKNLEFSLS RANDILRRLY SLGWISSNEL KGALNEVPIV YNQTSTQNIA PYVVDEVLKQ LDQLDGLKTQ GYTIKLTIDL DYQRLALESL RFGHQKILEK IAKEKPKTNA SNEDEDNLNA SMIVTDTSTG KILALVGGID YKKSAFNRAT QAKRQFGSAI KPFVYQIAFD NGYSTTSKIP DTARNFENGN YSKNSEQNHA WHPSNYSRKF LGLVTLQEAL SHSLNLATIN LSDQLGFEKI YQSLSDMGFK NLPKDLSIVL GSFAISPIDA AEKYSLFSNY GTMLKPMLIE SITNQQNDVK TFTPMETKKI TSKEQAFLTL SVLMDAVENG TGSLARIKGL EIAGKTGTSN NNIDAWFIGF TPTLQSVIWF GRDDNTPISK GATGGVVSAP VYSYFMRNIL AIEPSLKRKF DVPKGLRKEI VDKIPYYSTP NSITPTPKRT DDSEERLLF // ID O25862_HELPY Unreviewed; 512 AA. AC O25862; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) {ECO:0000313|EMBL:AAD08316.1}; GN OrderedLocusNames=HP_1272 {ECO:0000313|EMBL:AAD08316.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08316.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08316.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU000320}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU000320}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08316.1; -; Genomic_DNA. DR PIR; H64678; H64678. DR RefSeq; NP_208064.1; NC_000915.1. DR RefSeq; WP_001159928.1; NC_018939.1. DR ProteinModelPortal; O25862; -. DR STRING; 85962.HP1272; -. DR PaxDb; O25862; -. DR DNASU; 898821; -. DR EnsemblBacteria; AAD08316; AAD08316; HP_1272. DR GeneID; 898821; -. DR KEGG; heo:C694_06575; -. DR KEGG; hpy:HP1272; -. DR PATRIC; 20593921; VBIHelPyl33062_1331. DR eggNOG; ENOG4105C8S; Bacteria. DR eggNOG; COG1008; LUCA. DR KO; K00342; -. DR OMA; VLLLWHG; -. DR OrthoDB; EOG647TZ6; -. DR BioCyc; HPY:HP1272-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR InterPro; IPR010227; NADH_Q_OxRdtase_chainM/4. DR InterPro; IPR003918; NADH_UbQ_OxRdtase. DR InterPro; IPR001750; ND/Mrp_mem. DR Pfam; PF00361; Proton_antipo_M; 1. DR PRINTS; PR01437; NUOXDRDTASE4. DR TIGRFAMs; TIGR01972; NDH_I_M; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:AAD08316.1}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 53 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 109 127 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 133 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 182 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 232 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 244 267 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 273 295 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 302 323 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 329 350 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 371 394 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 406 428 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 449 470 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 126 419 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 512 AA; 56953 MW; B593C916EA2B8EDE CRC64; MQFLHAHLLS VVIFFPMLSA LLAFFMSDQA SRAYAIVIAL IELLLILLLW HGFDIQTAGM QFEEMKELVY QIGVNYHVGV DGIALFLLLL NAIVVLLSVI YVKERRKDFA ICLLLLEGIL MGVFSSLNMI FFYAFWEISL LPVLYLIGRF GRNNKIYSGM KFFLYTFLAS LCMLLGILYI GYDYANNYGM MSFDILDWYQ LNFSSGVKTW LFVAFLIGIA VKIPLFPLHT WLPYAYSNAP TLGSVMLSAL LSKMGTYALL RFLLPLFPDL SEIYLTPIAI AALCMIIYGG FLAYAQKDLK TLIAYSSFSH MGVVVLGVFS FNVEGISGAV FMMFAHGIIV MGLFLLAGIL EERASSLEIA RFGSIAKSAP IFAAFFMIVL MANVGMPLSI GFVGEFLSLL GFFATYPLLA IIAGTSIILS AIYMLTSYKD VFFGNLKAGS NQISVFEDLN AREVGVLSVI LALILILGIY PKVLLKPIEQ GSKQLLEVIE IRSLPFLGSL DTKIKEVSYV NR // ID O25324_HELPY Unreviewed; 189 AA. AC O25324; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07672.1}; GN OrderedLocusNames=HP_0603 {ECO:0000313|EMBL:AAD07672.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07672.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07672.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07672.1; -; Genomic_DNA. DR PIR; C64595; C64595. DR RefSeq; NP_207398.1; NC_000915.1. DR RefSeq; WP_010875502.1; NC_000915.1. DR ProteinModelPortal; O25324; -. DR STRING; 85962.HP0603; -. DR PaxDb; O25324; -. DR PRIDE; O25324; -. DR EnsemblBacteria; AAD07672; AAD07672; HP_0603. DR GeneID; 900030; -. DR KEGG; hpy:HP0603; -. DR PATRIC; 20592485; VBIHelPyl33062_0631. DR OMA; NIQSAVG; -. DR OrthoDB; EOG6QG8HD; -. DR BioCyc; HPY:HP0603-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 189 AA; 21347 MW; 15BDC34BC9E57D8B CRC64; MAKKDWNFFK PLEPTKKYFG SFKIGYLYQH AETTKRSPIR PKNRPPILMD KTYHDASLGF QVGFVLKKKA LLGGYLDAGM GDSYFMSAGF MAGVRLFKGW VIPKIALGYQ LQILGAKIDK YQFNIQSAVG SVGLFFNAAK NFGLSIEARG GIPFYFIQSR FSKAFGTPRL NIYSVGITFT FYDFTRFLG // ID O25948_HELPY Unreviewed; 380 AA. AC O25948; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Alanine dehydrogenase (Ald) {ECO:0000313|EMBL:AAD08435.1}; GN OrderedLocusNames=HP_1398 {ECO:0000313|EMBL:AAD08435.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08435.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08435.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08435.1; -; Genomic_DNA. DR PIR; F64694; F64694. DR RefSeq; NP_208189.1; NC_000915.1. DR RefSeq; WP_000152122.1; NC_018939.1. DR ProteinModelPortal; O25948; -. DR IntAct; O25948; 1. DR STRING; 85962.HP1398; -. DR PaxDb; O25948; -. DR EnsemblBacteria; AAD08435; AAD08435; HP_1398. DR GeneID; 899898; -. DR KEGG; heo:C694_07225; -. DR KEGG; hpy:HP1398; -. DR PATRIC; 20594185; VBIHelPyl33062_1463. DR eggNOG; ENOG4105DCF; Bacteria. DR eggNOG; COG0686; LUCA. DR KO; K00259; -. DR OMA; YAKLQNH; -. DR OrthoDB; EOG6Z6FTG; -. DR BioCyc; HPY:HP1398-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR007886; AlaDH/PNT_N. DR InterPro; IPR007698; AlaDH/PNT_NAD(H)-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01262; AlaDh_PNT_C; 1. DR Pfam; PF05222; AlaDh_PNT_N; 1. DR SMART; SM01002; AlaDh_PNT_C; 1. DR SMART; SM01003; AlaDh_PNT_N; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 135 AlaDh_PNT_N. {ECO:0000259|SMART:SM01003}. FT DOMAIN 152 300 AlaDh_PNT_C. {ECO:0000259|SMART:SM01002}. SQ SEQUENCE 380 AA; 40997 MW; 00870B5179B1DC96 CRC64; MTIGLVKESM DLESRVALVP DDVALIVQKG VEVLVQNSAG ANSGYSNEAY ESVGAKIVDS KTAWGQDLVV KCKEPLEHEY PLLKEKATLF SYLDLAYQKS LCEMFIDKKI TSICTETIAG PKNDYPILAP MSVVAGRLAA HLVQHYLLAL EHVKGFMGKG VMLGGLSGAQ RAKIVVVGGG VVGMESAKVL SQMGAKVTIL ELDYAKLQNH PYYHLYDLEV LSVNEANIIQ ALNGAVGLVG AVLVTASQTP KVILRKHLKY MQKQGVVIDV ACDLGGCIET IHQTSHSNPV YVEEDLLHYG VPNMPGIVAK TSSTAYSHAS VPYLLYYLEH GLKGFLTANT KIVANTLGGL SAYNGYITQE GIAKAFNLAF KSPLEILKEL // ID O25500_HELPY Unreviewed; 273 AA. AC O25500; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Lipooligosaccharide 5G8 epitope biosynthesis-associated protein (Lex2B) {ECO:0000313|EMBL:AAD07876.1}; GN OrderedLocusNames=HP_0826 {ECO:0000313|EMBL:AAD07876.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07876.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07876.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07876.1; -; Genomic_DNA. DR PIR; B64623; B64623. DR RefSeq; NP_207619.1; NC_000915.1. DR RefSeq; WP_001262061.1; NC_018939.1. DR ProteinModelPortal; O25500; -. DR STRING; 85962.HP0826; -. DR CAZy; GT25; Glycosyltransferase Family 25. DR PaxDb; O25500; -. DR EnsemblBacteria; AAD07876; AAD07876; HP_0826. DR GeneID; 900191; -. DR KEGG; heo:C694_04230; -. DR KEGG; hpy:HP0826; -. DR PATRIC; 20592941; VBIHelPyl33062_0859. DR eggNOG; ENOG4107EI9; Bacteria. DR eggNOG; COG3306; LUCA. DR KO; K07270; -. DR OMA; IMDATFI; -. DR OrthoDB; EOG6RJV3W; -. DR BioCyc; HPY:HP0826-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002654; Glyco_trans_25. DR Pfam; PF01755; Glyco_transf_25; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 273 AA; 31558 MW; 1DA1BE51D1A10615 CRC64; MRVFAISLNQ KVCDTFGLVF RDTTTLLNSI NATHHQAQIF DAIYSKTFEG GLHPLVKKHL HPYFITQNIK DMGITTNLIS EVSKFYYALK YHAKFMSLGE LGCYASHYSL WEKCIELNEA ICILEDDITL KEDFKEGLDF LEKHIQELGY IRLMHLLYDA SVKSEPLSHK NHEIQERVGI IKAYSEGVGT QGYVITPKIA KVFLKCSRKW VVPVDTIMDA TFIHGVKNLV LQPFVIADDE QISTIARKEE PYSPKIALMR ELHFKYLKYW QFV // ID O25600_HELPY Unreviewed; 496 AA. AC O25600; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07993.1}; GN OrderedLocusNames=HP_0946 {ECO:0000313|EMBL:AAD07993.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07993.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07993.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07993.1; -; Genomic_DNA. DR PIR; B64638; B64638. DR RefSeq; NP_207738.1; NC_000915.1. DR RefSeq; WP_000524398.1; NC_018939.1. DR ProteinModelPortal; O25600; -. DR STRING; 85962.HP0946; -. DR PaxDb; O25600; -. DR EnsemblBacteria; AAD07993; AAD07993; HP_0946. DR GeneID; 899479; -. DR KEGG; heo:C694_04870; -. DR KEGG; hpy:HP0946; -. DR PATRIC; 20593203; VBIHelPyl33062_0983. DR eggNOG; ENOG4107S6Z; Bacteria. DR eggNOG; COG1757; LUCA. DR OMA; LVPISSW; -. DR OrthoDB; EOG6CGC8T; -. DR BioCyc; HPY:HP0946-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR018461; Na/H_Antiport_NhaC-like_C. DR Pfam; PF03553; Na_H_antiporter; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 75 96 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 154 183 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 203 222 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 254 274 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 286 305 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 317 338 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 362 390 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 445 464 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 470 486 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 165 462 Na_H_antiporter. FT {ECO:0000259|Pfam:PF03553}. SQ SEQUENCE 496 AA; 53929 MW; 3BAA5DD8F14F094B CRC64; MGLSASSLIV PISVILMVVF TKRVALSLFV GILVSAVLMH SLHLSQLVEY IYHKITSVFY TYEPEKGLNF NLSNLYVFGF LIFLGVLSQV ILKSGSVQNF VKKAKKYSKN AKTPEFIAFF SGIIIFVDDY FNALTVGQIS KSLNDAHNST RERLAYIIDS TSAPVCLLVP ISSWGAYIMG IMNNDSSPLL KDSFSVLVQS LSSNYYAIFA LIAVFLTILW QINLPSMRKY QNIGVKDFYS EQEESSSKLA PLSLLPLSIL LLIVSISSLL FYTGVILKNT DASFSLFYGG LFSLIVTYLL AYKFLEKGSF FKLMLDGFKS VGPAILVLTL AWAIGPVIRD DAQTGLYLAN ISKGFLNNGG GVYMPLIFFL ISGFIAFSTG TSWGAFAIML PIGAGMASES DIILIVSAIL SGAVYGDHTS PISDTTILSA TGAGCSVQSH FITQLPYATI AMLCSAVSLG VASFMYSRSL ALLIGVALLV GVFYLLKKFY GENLKT // ID O25805_HELPY Unreviewed; 28 AA. AC O25805; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08244.1}; GN OrderedLocusNames=HP_1194 {ECO:0000313|EMBL:AAD08244.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08244.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08244.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08244.1; -; Genomic_DNA. DR PIR; B64669; B64669. DR IntAct; O25805; 3. DR STRING; 85962.HP1194; -. DR PaxDb; O25805; -. DR PRIDE; O25805; -. DR EnsemblBacteria; AAD08244; AAD08244; HP_1194. DR BioCyc; HPY:HP1194-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 28 AA; 3449 MW; 56B85E6BB3FF2D84 CRC64; MLFKNPLIHR PPYKKFRLTN DKLFCIQS // ID O25124_HELPY Unreviewed; 250 AA. AC O25124; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 97. DE SubName: Full=Short chain alcohol dehydrogenase {ECO:0000313|EMBL:AAD07424.1}; GN OrderedLocusNames=HP_0357 {ECO:0000313|EMBL:AAD07424.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07424.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07424.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. {ECO:0000256|RuleBase:RU000363}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07424.1; -; Genomic_DNA. DR PIR; E64564; E64564. DR RefSeq; NP_207155.1; NC_000915.1. DR RefSeq; WP_000940198.1; NC_018939.1. DR ProteinModelPortal; O25124; -. DR STRING; 85962.HP0357; -. DR PaxDb; O25124; -. DR EnsemblBacteria; AAD07424; AAD07424; HP_0357. DR GeneID; 900093; -. DR KEGG; heo:C694_01810; -. DR KEGG; hpy:HP0357; -. DR PATRIC; 20591947; VBIHelPyl33062_0370. DR eggNOG; ENOG4105EMU; Bacteria. DR eggNOG; COG4221; LUCA. DR KO; K00540; -. DR OMA; LMAVQSK; -. DR OrthoDB; EOG6N3CR8; -. DR BioCyc; HPY:HP0357-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 2. DR Pfam; PF00106; adh_short; 1. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 250 AA; 27884 MW; B2A699866011E957 CRC64; MAHILVSGAT SGFGLEIAKA FLQKNHVVFG TGRRKENLQK LQLAYPKHFI PLCFDLQNKL ETKRALEAIF SMTDRIDALI NNAGLALGLN KAYECELDDW EIMIDTNIKG LLHLTRLILP SMIEHDQGTI INLGSIAGTY AYPGGNVYGA SKAFVKQFSL NLRADLAGTN IRVSNVEPGL CGETEFSMVR FKGDKIKAQS VYENTIYLKP QDIANIVLWI YEQPLHVNIN RIEIMPISQT FAPLPTHKNP // ID O25480_HELPY Unreviewed; 506 AA. AC O25480; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Sigma-54 interacting protein {ECO:0000313|EMBL:AAD07840.1}; GN OrderedLocusNames=HP_0792 {ECO:0000313|EMBL:AAD07840.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07840.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07840.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07840.1; -; Genomic_DNA. DR PIR; H64618; H64618. DR RefSeq; NP_207585.1; NC_000915.1. DR RefSeq; WP_000611139.1; NC_018939.1. DR ProteinModelPortal; O25480; -. DR DIP; DIP-3050N; -. DR IntAct; O25480; 7. DR MINT; MINT-166408; -. DR STRING; 85962.HP0792; -. DR PaxDb; O25480; -. DR EnsemblBacteria; AAD07840; AAD07840; HP_0792. DR GeneID; 899965; -. DR KEGG; heo:C694_04060; -. DR KEGG; hpy:HP0792; -. DR PATRIC; 20592871; VBIHelPyl33062_0824. DR eggNOG; ENOG4105C0P; Bacteria. DR eggNOG; COG0606; LUCA. DR KO; K07391; -. DR OMA; CRCTPDQ; -. DR OrthoDB; EOG6ZWJFW; -. DR BioCyc; HPY:HP0792-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR004482; Mg_chelat-rel. DR InterPro; IPR025158; Mg_chelat-rel_C. DR InterPro; IPR000523; Mg_chelatse_chII_dom. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2. DR PANTHER; PTHR32039:SF7; PTHR32039:SF7; 2. DR Pfam; PF01078; Mg_chelatase; 1. DR Pfam; PF13335; Mg_chelatase_C; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR TIGRFAMs; TIGR00368; TIGR00368; 1. DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 200 403 Mg_chelatase. {ECO:0000259|Pfam:PF01078}. FT DOMAIN 412 503 Mg_chelatase_C. FT {ECO:0000259|Pfam:PF13335}. SQ SEQUENCE 506 AA; 57127 MW; 80129B997E0FF894 CRC64; MINTMFCATM QRGVAEIVAV EATFTRALPA FVISGLANSS IQEAKQRVQS ALQNNDFTFP PLKITINLSP SDLPKSGSHF DLPIALLIAL QKQELAFKEW FAFGELGLDG KIKPNPNIFP MLLDIAIKHP HAKIIAPKAN EELFSLIPNL QCFFVGHFKE ALEILQNPET KADTHTKKLP FKTIELNDKE YYFSDAYALD FKEVKGQAVA KEAALIASAG FHNLILEGSP GCGKSMIINR MRYILPPLSL NEILEATKLR ILSEQDSAYY PLRSFRNPHQ SASKSSILGS SSLREPKPGE IALAHNGMLF FDELPHFKKD ILEALREPLE NNKLVVSRVH SKIEYETSFL FVGAQNPCLC GNLLSATKAC RCQDREITQY KNRLSEPFLD RIDLFVQMEE GNYKDTPSHS WTSKEMHELV LLAFKQQKLR KQSVFNGKLN EEQIERFCPL NAEAKKLLEQ AVERFNLSMR SINKVKKVAR TIADLNACED IEKSHMLKAL SFRKIS // ID O25925_HELPY Unreviewed; 347 AA. AC O25925; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Rod shape-determining protein (MreB) {ECO:0000313|EMBL:AAD08416.1}; GN OrderedLocusNames=HP_1373 {ECO:0000313|EMBL:AAD08416.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08416.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08416.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08416.1; -; Genomic_DNA. DR PIR; E64691; E64691. DR RefSeq; NP_208164.1; NC_000915.1. DR RefSeq; WP_000577765.1; NC_000915.1. DR ProteinModelPortal; O25925; -. DR DIP; DIP-3382N; -. DR IntAct; O25925; 2. DR MINT; MINT-160364; -. DR STRING; 85962.HP1373; -. DR PaxDb; O25925; -. DR PRIDE; O25925; -. DR EnsemblBacteria; AAD08416; AAD08416; HP_1373. DR GeneID; 900312; -. DR KEGG; hpy:HP1373; -. DR PATRIC; 20594135; VBIHelPyl33062_1438. DR eggNOG; ENOG4105DFF; Bacteria. DR eggNOG; COG1077; LUCA. DR KO; K03569; -. DR OMA; HETGIVT; -. DR OrthoDB; EOG66QM00; -. DR BioCyc; HPY:HP1373-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0000902; P:cell morphogenesis; IEA:InterPro. DR InterPro; IPR004753; MreB_Mrl. DR Pfam; PF06723; MreB_Mbl; 1. DR PRINTS; PR01652; SHAPEPROTEIN. DR TIGRFAMs; TIGR00904; mreB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 347 AA; 37398 MW; 583AF237A13DF407 CRC64; MIFSKLIGLF SHDIAIDLGT ANTIVLVKGQ GIIINEPSIV AVRMGLFDSK AYDILAVGSE AKEMLGKTPN SIRAIRPMKD GVIADYDITA KMIRYFIEKV HKRKTWIRPR IMVCVPYGLT SVERNAVKES TLSAGAREVF LIEEPMAAAI GAGLPVKEPQ GSLIVDIGGG TTEIGVISLG GLVISKSIRV AGDKLDQSIV EYIRKKFNLL IGERTGEEIK IEIGCAIKLD PPLTMEVSGR DQVSGLLHTI ELSSDDVFEA IKDQVREISS ALRSVLEEVK PDLAKDIVQN GVVLTGGGAL IKGLDKYLSD MVKLPVYVGD EPLLAVAKGT GEAIQDLDLL SRVGFSE // ID O25183_HELPY Unreviewed; 147 AA. AC O25183; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07504.1}; GN OrderedLocusNames=HP_0433 {ECO:0000313|EMBL:AAD07504.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07504.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07504.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07504.1; -; Genomic_DNA. DR PIR; A64574; A64574. DR ProteinModelPortal; O25183; -. DR DIP; DIP-3523N; -. DR IntAct; O25183; 2. DR MINT; MINT-173265; -. DR STRING; 85962.HP0433; -. DR PaxDb; O25183; -. DR PRIDE; O25183; -. DR EnsemblBacteria; AAD07504; AAD07504; HP_0433. DR PATRIC; 20592125; VBIHelPyl33062_0451. DR OrthoDB; EOG6FRD5T; -. DR BioCyc; HPY:HP0433-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 147 AA; 17497 MW; 2107FDA05EB3DA84 CRC64; MKRPTMPLFI ESLEKASLQV LECENCSMTY YDRDYNRECE ICPYCDAKKP VRLVATSYYQ KSEVFYFVSN FTDPIFLPTT LFKGIEVVKS EWEFAEIANN ILIFHHDIQQ EKILINNKRL DHYRIEIDLE KELTISYNGF LIKVQKC // ID O26006_HELPY Unreviewed; 397 AA. AC O26006; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Type IIS restriction enzyme R protein (BCGIB) {ECO:0000313|EMBL:AAD08511.1}; GN OrderedLocusNames=HP_1471 {ECO:0000313|EMBL:AAD08511.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08511.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08511.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08511.1; -; Genomic_DNA. DR PIR; G64703; G64703. DR RefSeq; NP_208262.1; NC_000915.1. DR RefSeq; WP_010875631.1; NC_000915.1. DR ProteinModelPortal; O26006; -. DR IntAct; O26006; 6. DR STRING; 85962.HP1471; -. DR REBASE; 3064; S.HpyAORF1472P. DR PaxDb; O26006; -. DR PRIDE; O26006; -. DR EnsemblBacteria; AAD08511; AAD08511; HP_1471. DR GeneID; 899821; -. DR KEGG; hpy:HP1471; -. DR PATRIC; 20594353; VBIHelPyl33062_1545. DR eggNOG; ENOG4108Z8Y; Bacteria. DR eggNOG; ENOG410ZWSK; LUCA. DR OMA; NALMKQI; -. DR OrthoDB; EOG6SFPC3; -. DR BioCyc; HPY:HP1471-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 22 158 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 204 370 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 397 AA; 45085 MW; 517B687DAAA41A46 CRC64; MLSSKKIYHA NTIKIHDTQI ENSYPYVVRA ATNNGIKGFI IDDPTFANKK NTLSFAQDTF TVFYQKQPYF TGNKVKILKP KFAFKSPKIL HSISAILQFI LKPLTWGLGS TTESIAEFKF SLPLKPTANA QTLEDIDFDF MEKFIAELEQ CRLAELEQCR LAELQAYLKA TGLENTTLSN DEENALNVFN NSGGGGGNTP CGLTWQSFRL GDLFEIEKTL SFNKDALTQG EDYDYITRTS QNQGVLQTTG FVNAENLNPP FTWSLGLLQM DFFYRKKSWY AGQFMRKITP KTEIENKIDL RIANYFTTLL NALKRPLLSV LVRDIDKTFR EQKIQLPLKP TAKTQTLDGI DFDFMHTLIN ALMKQTIQGV AQYCDAKIQA TKEVISQEAP VQKDSLF // ID O25905_HELPY Unreviewed; 459 AA. AC O25905; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Protease {ECO:0000313|EMBL:AAD08394.1}; GN OrderedLocusNames=HP_1350 {ECO:0000313|EMBL:AAD08394.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08394.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08394.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the peptidase S41A family. CC {ECO:0000256|RuleBase:RU004404}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08394.1; -; Genomic_DNA. DR PIR; F64688; F64688. DR RefSeq; NP_208142.1; NC_000915.1. DR RefSeq; WP_000243678.1; NC_000915.1. DR ProteinModelPortal; O25905; -. DR DIP; DIP-3067N; -. DR IntAct; O25905; 5. DR MINT; MINT-176550; -. DR STRING; 85962.HP1350; -. DR PaxDb; O25905; -. DR PRIDE; O25905; -. DR EnsemblBacteria; AAD08394; AAD08394; HP_1350. DR GeneID; 900352; -. DR KEGG; hpy:HP1350; -. DR PATRIC; 20594085; VBIHelPyl33062_1413. DR eggNOG; ENOG4105CN1; Bacteria. DR eggNOG; COG0793; LUCA. DR KO; K03797; -. DR OMA; PVKEDPQ; -. DR OrthoDB; EOG6PS5W5; -. DR BioCyc; HPY:HP1350-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008236; F:serine-type peptidase activity; IEA:UniProtKB-KW. DR Gene3D; 2.30.42.10; -; 1. DR Gene3D; 3.90.226.10; -; 2. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR001478; PDZ. DR InterPro; IPR004447; Peptidase_S41A. DR InterPro; IPR005151; Tail-specific_protease. DR Pfam; PF13180; PDZ_2; 1. DR Pfam; PF03572; Peptidase_S41; 1. DR SMART; SM00228; PDZ; 1. DR SMART; SM00245; TSPc; 1. DR SUPFAM; SSF50156; SSF50156; 1. DR SUPFAM; SSF52096; SSF52096; 2. DR TIGRFAMs; TIGR00225; prc; 1. DR PROSITE; PS50106; PDZ; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|RuleBase:RU004404}; KW Protease {ECO:0000256|RuleBase:RU004404}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Serine protease {ECO:0000256|RuleBase:RU004404}. FT DOMAIN 99 167 PDZ (DHR). {ECO:0000259|PROSITE:PS50106}. SQ SEQUENCE 459 AA; 50552 MW; B345339F0763CA3A CRC64; MVLLTMTKRL FKGLLAVSLA VSLHGGEVKE KKPVKPVKED PQELAAKRVE AFSRFSNVVS EIEKKYVDKI SISEIMTKAI EGLLSNLDAH SAYLNEKKFK EFQAQTEGEF GGLGITVGMR DGVLTVIAPL EGTPAYKAGV KSGDNILKIN NESTLSMSID DAINLMRGKP KTPIQITVVR KNEPKPLVFN IIRDIIKLPS VYVKKIKETP YLYVRVSGFD KNVTKSVLEG LKANPKAKGI VLDLRGNPGG LLNQAVGLSN LFIKEGVLVS QKGKNKEENL EYKANGRAPY TNLPIAVLVN GGSASASEIV AGALQDHKRA VIIGEKTFGK GSVQMLLPVN KDEAIKITTA RYYLPSGRTI QAKGITPDIV IYPGKVPENE NKFSLKEADL KHHLEQELKK IDDKTPNSKE ADKDKKNEEE KEITPKMIND DIQLKTAIDS LKTWSIVDEK MDEKAPKKK // ID O24863_HELPY Unreviewed; 469 AA. AC O24863; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07093.1}; GN OrderedLocusNames=HP_0018 {ECO:0000313|EMBL:AAD07093.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07093.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07093.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07093.1; -; Genomic_DNA. DR PIR; B64522; B64522. DR RefSeq; NP_206820.1; NC_000915.1. DR RefSeq; WP_000689481.1; NC_000915.1. DR ProteinModelPortal; O24863; -. DR STRING; 85962.HP0018; -. DR PaxDb; O24863; -. DR PRIDE; O24863; -. DR EnsemblBacteria; AAD07093; AAD07093; HP_0018. DR GeneID; 899099; -. DR KEGG; hpy:HP0018; -. DR PATRIC; 20591229; VBIHelPyl33062_0016. DR eggNOG; ENOG4108W5G; Bacteria. DR eggNOG; COG3014; LUCA. DR KO; K09859; -. DR OMA; YYKAIDY; -. DR OrthoDB; EOG6BKJ4H; -. DR BioCyc; HPY:HP0018-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 469 AA; 53434 MW; 00A837F0C7DB235B CRC64; MKIFVLLMSV ILGISLTGCI GYRMDLEHFN TLYYEESPKK AYEYSKQFTK KKKNALLWDL QNGLSALYAR DYQTSLGVLD QAEQRFDKTQ SAFTRGAGYV GATMINDNVR AYGGNIYEGV LINYYKAIDY MLLNDSAKAR VQFNRANERQ RRAKEFYYEE VQKAIKEIDS SKKHNINMER SRVEVSEILN NTYSNLDKYE AYQGLLNPAV SYLSGLFYAL NGDENKGLGY LNEAYGISQS PFVAQDLVFF KNPNRSHFTW IIIEDGKEPQ KSEFKIDVPI FMIDSVYNVS IALPKLEKGE AFYQNFTLKD GEKVTPFDTL ASIDAVVASE FRKQLPYIIT RAILSATFKV GMQAVANYYL GFVGGLVTSL YSGVSTFADT RSTSIFAHKI YLMRIKNKAF ESYEVRADSI DAFSFSLKPC KRSLESPKII DARELLSGFV AAPQIFCSNR HNILYVRSFK NGFVLSRLK // ID O26033_HELPY Unreviewed; 788 AA. AC O26033; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 128. DE SubName: Full=Cation-transporting ATPase, P-type (CopA) {ECO:0000313|EMBL:AAD08539.1}; GN OrderedLocusNames=HP_1503 {ECO:0000313|EMBL:AAD08539.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08539.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08539.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC Q09068:ureI; NbExp=3; IntAct=EBI-7498734, EBI-7667832; CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU362081}. CC -!- SIMILARITY: Belongs to the cation transport ATPase (P-type) CC (TC 3.A.3) family. Type IB subfamily. CC {ECO:0000256|RuleBase:RU362081}. CC -!- SIMILARITY: Contains 1 HMA domain. CC {ECO:0000256|RuleBase:RU362081}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08539.1; -; Genomic_DNA. DR PIR; G64707; G64707. DR RefSeq; NP_208294.1; NC_000915.1. DR RefSeq; WP_000650233.1; NC_018939.1. DR ProteinModelPortal; O26033; -. DR DIP; DIP-3099N; -. DR IntAct; O26033; 8. DR MINT; MINT-178933; -. DR STRING; 85962.HP1503; -. DR PaxDb; O26033; -. DR EnsemblBacteria; AAD08539; AAD08539; HP_1503. DR GeneID; 899788; -. DR KEGG; heo:C694_07785; -. DR KEGG; hpy:HP1503; -. DR PATRIC; 20594421; VBIHelPyl33062_1579. DR eggNOG; ENOG4105C59; Bacteria. DR eggNOG; COG2217; LUCA. DR KO; K17686; -. DR OMA; CLALESH; -. DR OrthoDB; EOG6742RM; -. DR BioCyc; HPY:HP1503-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0019829; F:cation-transporting ATPase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0030001; P:metal ion transport; IEA:InterPro. DR Gene3D; 2.70.150.10; -; 1. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR021993; ATPase-cat-bd. DR InterPro; IPR018303; ATPase_P-typ_P_site. DR InterPro; IPR008250; ATPase_P-typ_transduc_dom_A. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006121; HMA_dom. DR InterPro; IPR027256; P-typ_ATPase_IB. DR InterPro; IPR001757; P_typ_ATPase. DR Pfam; PF12156; ATPase-cat_bd; 1. DR Pfam; PF00122; E1-E2_ATPase; 1. DR Pfam; PF00403; HMA; 1. DR SUPFAM; SSF55008; SSF55008; 1. DR SUPFAM; SSF56784; SSF56784; 2. DR TIGRFAMs; TIGR01525; ATPase-IB_hvy; 1. DR TIGRFAMs; TIGR01494; ATPase_P-type; 1. DR PROSITE; PS00154; ATPASE_E1_E2; 1. DR PROSITE; PS50846; HMA_2; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000256|RuleBase:RU362081}; KW Membrane {ECO:0000256|RuleBase:RU362081}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU362081}; KW Transmembrane helix {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 165 185 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 214 232 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 244 266 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 425 446 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 452 481 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 735 759 Helical. {ECO:0000256|RuleBase:RU362081}. FT TRANSMEM 765 783 Helical. {ECO:0000256|RuleBase:RU362081}. FT DOMAIN 83 148 HMA. {ECO:0000259|PROSITE:PS50846}. SQ SEQUENCE 788 AA; 86535 MW; 4A26106CF6CDBB85 CRC64; MKCSHCQLEF KESELFKEVI NHKELHFCCT GCARVYALLL DLNLESFYDK LNDSTLAPVT PQDSMSALEL EQALEENNKG DFILNLLLEK THCNACLWLN QKVLERLSGV KKVSVNFTTH HLQIVFEKSL NPKEIIQKIE SLGYGAKIYN AQNYTLKAQK EQRSYLLTLS VGFFATMNLM FIAIAKYASY GGASYGGANY GAGMDKLMQR NLDLVSLFLS LLVLVVVGRF FIKGAFYGLK NGVLGMDLSV SFGALSAFVY SVYAMLVSQE TYFEASSTIL TLVFGSKFLE LKARLFANEK CLALESHEIH SVIVVENGKQ TEKHPKDVAI GSVVWVPSGA KIALDGVLLN NASVDASLIS GEFKPLELGV NDPILGGYVN VGVPFSYQVS ANFQNSRLSG LLETLKKSFL EKPLIESSAN QIADIFSKAV LFLAFVSFLL WQFGLGGNFE KALMVCISVL VISCPCAFAL ATPIALVIGV FKNPLIVFKE ALFLETLAKV KKIFIDKTGT LTQKEVLLKE KIIYEEFDGR LLKSLLKVRE HLAHSAILKS LDGDEVSLEK IEFFAHGLKA SYQNETLLVG SLKFLGSMGV DIPMKESANI MVGFAKNETL CALFILEERL KANAKEVVQA LQNKGLELEI LSGDNESSVK ECAKKLGISN YHAHLTPEDK AQTISSYKGV CAMVGDGNND ALALKQASVS LGFEKSALSK SACDILLLEE DLSLLKKAFD NAQKVYQVVL QNIVLSLIYN AILIPVAMLG YINPLIASLS MSASSLLVVL NSLRLKRS // ID O24963_HELPY Unreviewed; 287 AA. AC O24963; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07225.1}; GN OrderedLocusNames=HP_0152 {ECO:0000313|EMBL:AAD07225.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07225.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07225.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07225.1; -; Genomic_DNA. DR PIR; H64538; H64538. DR RefSeq; NP_206951.1; NC_000915.1. DR RefSeq; WP_000626212.1; NC_018939.1. DR ProteinModelPortal; O24963; -. DR DIP; DIP-3490N; -. DR IntAct; O24963; 3. DR MINT; MINT-169539; -. DR STRING; 85962.HP0152; -. DR PaxDb; O24963; -. DR EnsemblBacteria; AAD07225; AAD07225; HP_0152. DR GeneID; 900147; -. DR KEGG; heo:C694_00760; -. DR KEGG; hpy:HP0152; -. DR PATRIC; 20591525; VBIHelPyl33062_0162. DR eggNOG; ENOG4105E63; Bacteria. DR eggNOG; COG2107; LUCA. DR KO; K11785; -. DR OMA; MISVAHS; -. DR OrthoDB; EOG6V7BKZ; -. DR BioCyc; HPY:HP0152-MONOMER; -. DR BioCyc; MetaCyc:MONOMER-18233; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016830; F:carbon-carbon lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00996; MqnD; 1. DR InterPro; IPR003773; Menaquinone_biosynth. DR InterPro; IPR030869; MqnD. DR Pfam; PF02621; VitK2_biosynth; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 287 AA; 32949 MW; 88A940E9ACD62704 CRC64; MISVAHSPDA DDIFMYYAIK FGWIDCPIKN KAFHNIALDI ETLNQEALKN TYDVSAISFG LYPKIANDYA LLPTATSFGN GYGPKLVKKK GVKLKKDFRV ALSGEHTTNA LLFKIYYKHA RITYMNFLDI EKAVLEEKVH AGVLIHESIL DFHNELEVEK ELWDVWKELI EVDLPLPLGG MAIRRSIPLY RAILIKKALI KAVEVALKHQ NLLSGMLLER SLIRVNKERL RTYLSLYANE TSTRLSEIQI LAIDKLFELG YQHGFYASLL KTKDCLLTDE YLKYRFS // ID O25935_HELPY Unreviewed; 68 AA. AC O25935; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08431.1}; GN OrderedLocusNames=HP_1384 {ECO:0000313|EMBL:AAD08431.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08431.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08431.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08431.1; -; Genomic_DNA. DR PIR; H64692; H64692. DR RefSeq; NP_208175.1; NC_000915.1. DR RefSeq; WP_000983499.1; NC_000915.1. DR ProteinModelPortal; O25935; -. DR STRING; 85962.HP1384; -. DR PaxDb; O25935; -. DR PRIDE; O25935; -. DR EnsemblBacteria; AAD08431; AAD08431; HP_1384. DR GeneID; 900295; -. DR KEGG; hpy:HP1384; -. DR PATRIC; 20594157; VBIHelPyl33062_1449. DR OMA; SCLKCEQ; -. DR OrthoDB; EOG628FB0; -. DR BioCyc; HPY:HP1384-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 68 AA; 7876 MW; 5728B023F3D51005 CRC64; MMQNSVKKLE YEERFNDALL KLQACQEEKQ VTSCLKCEQV LNCKIRNSYV DAAYESMSLG ERGGFDFN // ID O26038_HELPY Unreviewed; 458 AA. AC O26038; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 103. DE SubName: Full=Ferrodoxin-like protein {ECO:0000313|EMBL:AAD08550.1}; GN OrderedLocusNames=HP_1508 {ECO:0000313|EMBL:AAD08550.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08550.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08550.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08550.1; -; Genomic_DNA. DR PIR; D64708; D64708. DR RefSeq; NP_208299.1; NC_000915.1. DR RefSeq; WP_000894876.1; NC_018939.1. DR ProteinModelPortal; O26038; -. DR DIP; DIP-3261N; -. DR IntAct; O26038; 1. DR MINT; MINT-174888; -. DR STRING; 85962.HP1508; -. DR PaxDb; O26038; -. DR EnsemblBacteria; AAD08550; AAD08550; HP_1508. DR GeneID; 899783; -. DR KEGG; heo:C694_07810; -. DR KEGG; hpy:HP1508; -. DR PATRIC; 20594431; VBIHelPyl33062_1584. DR eggNOG; ENOG4105C58; Bacteria. DR eggNOG; COG0348; LUCA. DR OMA; ITMAKYN; -. DR OrthoDB; EOG6WDSCH; -. DR BioCyc; HPY:HP1508-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.10; -; 1. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR014116; Cyt_c_oxidase_cbb3_FixG. DR InterPro; IPR032879; FixG_C. DR InterPro; IPR013783; Ig-like_fold. DR Pfam; PF13746; Fer4_18; 1. DR Pfam; PF12801; Fer4_5; 1. DR Pfam; PF11614; FixG_C; 1. DR TIGRFAMs; TIGR02745; ccoG_rdxA_fixG; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 45 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 65 88 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 157 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 177 201 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 317 336 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 239 268 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 458 AA; 52651 MW; F4949AB09E4A3059 CRC64; MLETSSHFLK SFRLKRYIGF LLISLALLIT PFVRIDGAHL FLISFEHKQL HFLGKIFSAE ELQVMPFMVI LLFIGIFFIT TSLGRVWCGW ACPQTFLRVL YRDVIETKIF KLHKKISNKQ ESPKNTPSYK IRKVLSVLLF APVVAGLMML FFFYFIAPED FFMYLKNPSD HPIAMGFWLF STAVVLFDIV VVAERFCIYL CPYARVQSVL YDNDTLNPIY DEKRGGALYN NQGHLFPLPP KKRSPENECV NCLHCVQVCP THIDIRKGLQ LECINCLECV DACTITMAKF NRPSLIQWSS TNAINTRQKV HLVRLKTIAY MGVIAIVIAL LAITSFKKER MLLDINRNSD LYELRSSGYV DNDYVFLFHN TDNKDHEFYF KVLGQKDIQI KKPLNPIAIK AGQKIKAVVI LRKPLKSNAT EYKNAKDALI PITIQAYSAD DKNITIERES VFIAPSED // ID O25058_HELPY Unreviewed; 480 AA. AC O25058; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07358.1}; GN OrderedLocusNames=HP_0282 {ECO:0000313|EMBL:AAD07358.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07358.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07358.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07358.1; -; Genomic_DNA. DR PIR; B64555; B64555. DR RefSeq; NP_207080.1; NC_000915.1. DR RefSeq; WP_010875462.1; NC_000915.1. DR ProteinModelPortal; O25058; -. DR DIP; DIP-3705N; -. DR IntAct; O25058; 1. DR MINT; MINT-184288; -. DR STRING; 85962.HP0282; -. DR PaxDb; O25058; -. DR PRIDE; O25058; -. DR EnsemblBacteria; AAD07358; AAD07358; HP_0282. DR GeneID; 899194; -. DR KEGG; hpy:HP0282; -. DR PATRIC; 20591791; VBIHelPyl33062_0293. DR eggNOG; ENOG4105ER4; Bacteria. DR eggNOG; COG3400; LUCA. DR KO; K09944; -. DR OMA; YRHIGSI; -. DR OrthoDB; EOG6KT2KB; -. DR BioCyc; HPY:HP0282-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR GO; GO:0006813; P:potassium ion transport; IEA:InterPro. DR InterPro; IPR006037; RCK_C. DR Pfam; PF02080; TrkA_C; 1. DR SUPFAM; SSF116726; SSF116726; 1. DR PROSITE; PS51202; RCK_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 145 225 RCK C-terminal. FT {ECO:0000259|PROSITE:PS51202}. SQ SEQUENCE 480 AA; 56163 MW; DDDFC8849ACB8EA0 CRC64; MELKKIALIL DGIVAKNFLD LVLRHYSNHN FYIVVVKNES LIPKNYPSTF AFHCFDATSS FRLLQVLNDE VSDAFLIIQD FKEQRIIHKI IQTHFKRMCV VLSVKRDGEK TLENNEENKD EKLILIDEFE VLANKFISRL PNIPSTPREF GLGKGEIMEI DVPFGSIFAY RHIGSIRQKE YRIVGLYRND VLLLSTKSLV IQPRDILLVA GNPEILNAVY LQVKSNVGQF PAPFGKSIYL YIDMRLQNRK AMMRDVYQAL FLHKHLKSYK LYIQVLHPTS PKFYHKFLAL ETESIEVNFD FYRKSFIQKL HEDHQKKMGL IVVGRELFLS KKHRKALYKT ATPVYKTNTS GLSKTSQSVV VLNESLDINE DMSSVIFDVS MQMDLGLLLY DFDPNKRYKN EIVNHYENLA NAFNRKIEIF QTDIRNPIMY LNSLRNPILH FMPFEECITH TRFWWFLSTK VEKLAFLNDD NPQIFIPVAE // ID O24905_HELPY Unreviewed; 117 AA. AC O24905; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07142.1}; GN OrderedLocusNames=HP_0065 {ECO:0000313|EMBL:AAD07142.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07142.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07142.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07142.1; -; Genomic_DNA. DR PIR; A64528; A64528. DR RefSeq; NP_206865.1; NC_000915.1. DR RefSeq; WP_000491247.1; NC_000915.1. DR ProteinModelPortal; O24905; -. DR STRING; 85962.HP0065; -. DR PaxDb; O24905; -. DR PRIDE; O24905; -. DR EnsemblBacteria; AAD07142; AAD07142; HP_0065. DR GeneID; 900167; -. DR KEGG; hpy:HP0065; -. DR PATRIC; 20591331; VBIHelPyl33062_0067. DR OMA; HSQSEID; -. DR OrthoDB; EOG6V7BPZ; -. DR BioCyc; HPY:HP0065-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 117 AA; 14086 MW; 7A7DC32608F35C7D CRC64; MFSHEVYLEG CTLELRKICD DFEKNAMQDD LGQKLRSDVL EDMLKIAHDL ENLEDDTQYQ RRIIDEQIEE AKSLMRQIDM NFHPSSEIDR LMREAKEHER EASKRYDEYL KSKDKND // ID O24892_HELPY Unreviewed; 355 AA. AC O24892; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 105. DE RecName: Full=Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; DE EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417}; GN OrderedLocusNames=HP_0051 {ECO:0000313|EMBL:AAD07117.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07117.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07117.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + DNA = S-adenosyl-L- CC homocysteine + DNA containing 5-methylcytosine. CC {ECO:0000256|RuleBase:RU000417}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. C5-methyltransferase family. CC {ECO:0000256|RuleBase:RU000416}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07117.1; -; Genomic_DNA. DR PIR; C64526; C64526. DR RefSeq; NP_206852.1; NC_000915.1. DR RefSeq; WP_001106909.1; NC_018939.1. DR ProteinModelPortal; O24892; -. DR DIP; DIP-3111N; -. DR IntAct; O24892; 3. DR MINT; MINT-177595; -. DR STRING; 85962.HP0051; -. DR REBASE; 56875; M2.Hpy26695ORF230P. DR PaxDb; O24892; -. DR EnsemblBacteria; AAD07117; AAD07117; HP_0051. DR GeneID; 899179; -. DR KEGG; heo:C694_00235; -. DR KEGG; hpy:HP0051; -. DR PATRIC; 20591301; VBIHelPyl33062_0052. DR eggNOG; ENOG4105DVF; Bacteria. DR eggNOG; COG0270; LUCA. DR KO; K00558; -. DR OMA; GGRDEQY; -. DR OrthoDB; EOG64FKBC; -. DR BioCyc; HPY:HP0051-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003886; F:DNA (cytosine-5-)-methyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR018117; C5_DNA_meth_AS. DR InterPro; IPR001525; C5_MeTfrase. DR InterPro; IPR031303; C5_meth_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF00145; DNA_methylase; 1. DR PRINTS; PR00105; C5METTRFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00675; dcm; 1. DR PROSITE; PS00094; C5_MTASE_1; 1. DR PROSITE; PS00095; C5_MTASE_2; 1. DR PROSITE; PS51679; SAM_MT_C5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000256|RuleBase:RU000417, KW ECO:0000313|EMBL:AAD07117.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Restriction system {ECO:0000256|RuleBase:RU004244}; KW Transferase {ECO:0000256|RuleBase:RU000417, KW ECO:0000313|EMBL:AAD07117.1}. FT DOMAIN 3 350 SAM-dependent_MTases. FT {ECO:0000259|Pfam:PF00145}. SQ SEQUENCE 355 AA; 39792 MW; 6BC64EE65D9A0ACD CRC64; MNYKILDLFC GAGGFSAGLE CLEEFDALIG LDCDKQALIT FENNHKNAIG VCGDITQTEI KEKVIKLAKK LEINMIIGGP PCQGFSNKGK NLGLKDPRNF LFLEYIEIVK AIKPEIFIIE NVKNLISCAK GYFLEEIKER LNALGYQLSY QILNAKDYGV PQNRERAFIV GASRFSFDFN LLEPSQSVNV QDAISDLAYL CSNEGAFESD YLNPIQSSYQ ALMRKDSPKL YNHQATNHSQ AALEKLKLIN KEQGKECLPK NLHGKQQFKS TWGRLNWNKI SPTIDTRFDT PSNGTNSHPE LHRSITPREA ARIQSFSDNY IFYGNKTSVC KQIGNAVPPL LALALGKAIL KSLRK // ID O25891_HELPY Unreviewed; 382 AA. AC O25891; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08388.1}; GN OrderedLocusNames=HP_1333 {ECO:0000313|EMBL:AAD08388.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08388.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08388.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08388.1; -; Genomic_DNA. DR PIR; E64686; E64686. DR RefSeq; NP_208125.1; NC_000915.1. DR RefSeq; WP_001210151.1; NC_018939.1. DR ProteinModelPortal; O25891; -. DR DIP; DIP-3381N; -. DR IntAct; O25891; 2. DR MINT; MINT-166710; -. DR STRING; 85962.HP1333; -. DR PaxDb; O25891; -. DR EnsemblBacteria; AAD08388; AAD08388; HP_1333. DR GeneID; 898740; -. DR KEGG; heo:C694_06880; -. DR KEGG; hpy:HP1333; -. DR PATRIC; 20594049; VBIHelPyl33062_1395. DR OMA; QAYKAMR; -. DR OrthoDB; EOG6T1WP3; -. DR BioCyc; HPY:HP1333-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 16 {ECO:0000256|SAM:SignalP}. FT CHAIN 17 382 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157822. FT COILED 268 302 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 382 AA; 44224 MW; 672051544ADD18DA CRC64; MRFFCFFLFF LTFSNAQIMM TFDSQTNAKL SRSNEQLSDM LYKLNESLRI YQSVLSNNQD QLKEIKKANS TLNSQRRFFN ASQIRLMDTD ALLKQSALEL EKLQALEKHI KKGMEQERLI EESQTLFLQE HCPYLSGVKN LEEASNALEV QEQNNALFLL KEPKLARLLS RLDLMSALNA LCDQVLENQA HNQQSHNKIL EYNALKNHDF QAYKAMRLKK FKNKLQSQIQ AQEDALKTFL PLEKRLETLK THFLCDKENL KSCAKELHQR YQNALIERDK ELKNAKNNKE KHALILANYE HTLKTLNIEF LSELNKQMAF LNETMALNAR VLALLAKQHA KTPKPFNLSG GLSGDLSGGK ALIKNIRLDP HGFPSFKNFK QE // ID O24887_HELPY Unreviewed; 45 AA. AC O24887; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07123.1}; GN OrderedLocusNames=HP_0046 {ECO:0000313|EMBL:AAD07123.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07123.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07123.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07123.1; -; Genomic_DNA. DR PIR; F64525; F64525. DR RefSeq; WP_010875437.1; NC_018939.1. DR ProteinModelPortal; O24887; -. DR STRING; 85962.HP0046; -. DR PaxDb; O24887; -. DR PRIDE; O24887; -. DR EnsemblBacteria; AAD07123; AAD07123; HP_0046. DR BioCyc; HPY:HP0046-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 45 AA; 5018 MW; 461E02B22593EF7B CRC64; MCGFALNFKC FQKARCVTIL FFHKELGGKE CKGAFLLGQP PTSLH // ID O25268_HELPY Unreviewed; 126 AA. AC O25268; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Cag pathogenicity island protein (Cag14) {ECO:0000313|EMBL:AAD07601.1}; GN OrderedLocusNames=HP_0535 {ECO:0000313|EMBL:AAD07601.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07601.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07601.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07601.1; -; Genomic_DNA. DR PIR; G64586; G64586. DR RefSeq; NP_207331.1; NC_000915.1. DR RefSeq; WP_000938081.1; NC_000915.1. DR ProteinModelPortal; O25268; -. DR STRING; 85962.HP0535; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25268; -. DR PRIDE; O25268; -. DR EnsemblBacteria; AAD07601; AAD07601; HP_0535. DR GeneID; 900043; -. DR KEGG; hpy:HP0535; -. DR KO; K12099; -. DR OMA; KMGVPQV; -. DR OrthoDB; EOG6BKJCB; -. DR BioCyc; HPY:HP0535-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 69 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 126 AA; 13880 MW; 97204413634FBABA CRC64; MLPTKTRIRD PNKQELTQPK IKGLIMGKIL ASLLGGGTNL FTGLSSDLFS MILNFLFFLM LMMGLNEILG KKFNLPMDNI KNFMAEVLKN GFDSIKNMGS ALVGNGFGSN KSDKTTNKMS VSQVRL // ID O25113_HELPY Unreviewed; 260 AA. AC O25113; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07417.1}; GN OrderedLocusNames=HP_0346 {ECO:0000313|EMBL:AAD07417.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07417.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07417.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07417.1; -; Genomic_DNA. DR PIR; B64563; B64563. DR RefSeq; WP_010875469.1; NC_018939.1. DR ProteinModelPortal; O25113; -. DR DIP; DIP-3740N; -. DR IntAct; O25113; 7. DR MINT; MINT-187451; -. DR STRING; 85962.HP0346; -. DR PaxDb; O25113; -. DR PRIDE; O25113; -. DR EnsemblBacteria; AAD07417; AAD07417; HP_0346. DR PATRIC; 20591925; VBIHelPyl33062_0359. DR eggNOG; ENOG4106AEI; Bacteria. DR eggNOG; ENOG410XWXR; LUCA. DR OMA; FAYSEPS; -. DR OrthoDB; EOG6WMHWW; -. DR BioCyc; HPY:HP0346-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 192 216 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 260 AA; 28678 MW; EEFC41F1E83A98AB CRC64; MDKFLDWHYS VKGDYSELAL FVAKKIGLSA EDAVANVLQE KLLGKDYKQR LDAITKKLSK TYGSLLNQHE KFVSETALKG VDTDLSQNAK ILDTLGDEVA RKLKANFTGA IGATAGVSGL AIAAKLTPKL MAKIGAKLGA KVGGKFLAKI GTALSGSWTC GPFVPACTIG LWFGSDAAFN YIDEWLHRDD FKKEILNNIN EVKENLKNSY KQQFNDSFVK ISQEFQKSFK NAPVVEKKTI KEHIGDLNQT PEEDNQKINQ // ID O25211_HELPY Unreviewed; 1055 AA. AC O25211; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 102. DE SubName: Full=Type I restriction enzyme R protein (HsdR) {ECO:0000313|EMBL:AAD07526.1}; GN OrderedLocusNames=HP_0464 {ECO:0000313|EMBL:AAD07526.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07526.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07526.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07526.1; -; Genomic_DNA. DR PIR; H64577; H64577. DR RefSeq; NP_207262.1; NC_000915.1. DR RefSeq; WP_001146659.1; NC_018939.1. DR ProteinModelPortal; O25211; -. DR DIP; DIP-3165N; -. DR IntAct; O25211; 3. DR MINT; MINT-163765; -. DR STRING; 85962.HP0464; -. DR REBASE; 56853; Hpy26695ORF2375P. DR PaxDb; O25211; -. DR EnsemblBacteria; AAD07526; AAD07526; HP_0464. DR GeneID; 899248; -. DR KEGG; heo:C694_02380; -. DR KEGG; hpy:HP0464; -. DR PATRIC; 20592199; VBIHelPyl33062_0488. DR eggNOG; ENOG4107R41; Bacteria. DR eggNOG; COG0610; LUCA. DR KO; K01153; -. DR OMA; DEVHRSY; -. DR OrthoDB; EOG60GRR2; -. DR BioCyc; HPY:HP0464-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004519; F:endonuclease activity; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR007409; Restrct_endonuc_type1_HsdR_N. DR Pfam; PF04313; HSDR_N; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SUPFAM; SSF52540; SSF52540; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 283 527 Helicase ATP-binding. FT {ECO:0000259|SMART:SM00487}. SQ SEQUENCE 1055 AA; 123438 MW; 57ED60A1F332FC77 CRC64; MPYNEITRVQ IPALMHLAKL GYDFIPTNSK ENKPNLDTAT NILTNSFTKS FERLNPTKNA QETLAEMKKR LNCDDLGKSF YEYLLKSENQ IIDFDNPNNN LYEMMTELPY KSFRPDTTLF INGLPLVNIE VKQPYAKKGI KEERDRHIKR YENPENKVFY NLAQIWLFSD NLPYDENKPD QGAFYSASYS PIFQRFVEAH RLDITPPPPQ KNDQNHQNDQ NHRSLEEIQK SVLNEFNLKD TDTPKSPKDT PTNSLLTSFC SPKRLCFILK YGISFLKEKS EFKKHVWRYA QMFASLNVLK ELQKHYGTNQ NLKDPLKGII WHTQGSGKTA LTYHLTKLIR DFFSRSNLNK KTKFYFIVDR LDLLEQAKNE FLKRGLCVHE AENKEDLSQK LKSSSVFEGS QGNDEIIVVN IQKFKAPNEE KSPNEDPSNS APKEIISKTE LQESIQNSRN LQRVFIIDEA HRSYDPKGCF YANLIECDKT AIKIALTGTP LLEDNAQDKA TKNTFGNYLH TYSYTESIKD RHTLKLQLES IETSYKEKLQ EIYRLLQESI TIEDTEVKKE TIFNDEKYIN AMLYYIIRDL LDFRRLNDNE RLKAMVVCFS SKQARLADCL FNEVQEKVLQ ENPNLRILNK LKSSLILHDE QEVKEKVHSF KHEDTDIVFV FNMLLTGFDL PSLKRLYIHR ELKDHNLLQA LARVNRSYKN MSFGYLIDFV GIQENFDKTT DDYLKELNRF NQSGANSDSH IKDMFADRKT LEEDIKNAYD DLFDYPIDDI EGMTSAIVSM SAMNELVKVS RAINTLKERY NLIRTSNDKK ILSLKEKIDI EKIHKISSML HQKAKHLHAL KNINEPKNPN DLMILEDLIA LLDFKIEFKE RKELRFKEQE EITTKQKQAK EILEKIPDQQ DKEIQKFYKD FSKLLQTPTT SQNFEEISHS YDAIISQLKQ HKEQTTHLLN KYDNDLSYAI TNKRLHKHLM EQNISNSAGI FTLLSALKKA IDARIFKRQE ILNEEYYLKN AIKAELNNAF KKDPSLKDLE KEKELIIQTL FNELTQNHHQ GNPHA // ID O25076_HELPY Unreviewed; 184 AA. AC O25076; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07381.1}; GN OrderedLocusNames=HP_0305 {ECO:0000313|EMBL:AAD07381.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07381.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07381.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07381.1; -; Genomic_DNA. DR PIR; A64558; A64558. DR RefSeq; NP_207103.1; NC_000915.1. DR RefSeq; WP_000738964.1; NC_018939.1. DR ProteinModelPortal; O25076; -. DR STRING; 85962.HP0305; -. DR PaxDb; O25076; -. DR EnsemblBacteria; AAD07381; AAD07381; HP_0305. DR GeneID; 899072; -. DR KEGG; heo:C694_01540; -. DR KEGG; hpy:HP0305; -. DR PATRIC; 20591837; VBIHelPyl33062_0316. DR eggNOG; ENOG4105ZY0; Bacteria. DR eggNOG; ENOG41126QS; LUCA. DR OMA; QHEKLTW; -. DR OrthoDB; EOG63NMMV; -. DR BioCyc; HPY:HP0305-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR007372; Lipid/polyisoprenoid-bd_YceI. DR Pfam; PF04264; YceI; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}. FT CHAIN 18 184 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158546. FT DOMAIN 20 179 YceI. {ECO:0000259|Pfam:PF04264}. SQ SEQUENCE 184 AA; 20385 MW; 60E443AE62C4EC23 CRC64; MKKMVLVSVL LAGFLQAVNL DLSSAKLTWT AFKTKAKTPV NGSFESITYK LGKSQDSLKT LLEGASASMD SLKVNLGDEL KNKNVKEAFF ALFKNTNIKV TFRNVIEGDH AGSLTAYVRM NEKLVKVPMQ YTIAEDKIVV KGVLDLLNFG LKNELASLAK RCESFHEGLT WSQVEIQFES MIKG // ID O25344_HELPY Unreviewed; 110 AA. AC O25344; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07698.1}; GN OrderedLocusNames=HP_0627 {ECO:0000313|EMBL:AAD07698.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07698.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07698.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07698.1; -; Genomic_DNA. DR PIR; C64598; C64598. DR ProteinModelPortal; O25344; -. DR STRING; 85962.HP0627; -. DR PaxDb; O25344; -. DR PRIDE; O25344; -. DR EnsemblBacteria; AAD07698; AAD07698; HP_0627. DR PATRIC; 20592537; VBIHelPyl33062_0657. DR BioCyc; HPY:HP0627-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 110 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158556. SQ SEQUENCE 110 AA; 11465 MW; 0DB473081D3DE317 CRC64; MLKKSLLLLV FLVLQLSGAE ENNQAPKNTP PELNPANAKG APNSNTQITP KNDNSNLLDK LGSPENAQTE LSAGIDLAKK GDYQGAFKLF SQSCDNGNAA GCFASGGDVC // ID O25489_HELPY Unreviewed; 183 AA. AC O25489; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07860.1}; GN OrderedLocusNames=HP_0809 {ECO:0000313|EMBL:AAD07860.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07860.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07860.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07860.1; -; Genomic_DNA. DR PIR; A64621; A64621. DR RefSeq; NP_207602.1; NC_000915.1. DR RefSeq; WP_000797017.1; NC_018939.1. DR ProteinModelPortal; O25489; -. DR DIP; DIP-3721N; -. DR IntAct; O25489; 3. DR MINT; MINT-166091; -. DR STRING; 85962.HP0809; -. DR PaxDb; O25489; -. DR EnsemblBacteria; AAD07860; AAD07860; HP_0809. DR GeneID; 899354; -. DR KEGG; heo:C694_04145; -. DR KEGG; hpy:HP0809; -. DR PATRIC; 20592905; VBIHelPyl33062_0841. DR eggNOG; ENOG41082CU; Bacteria. DR eggNOG; COG1580; LUCA. DR KO; K02415; -. DR OMA; KVEFEMA; -. DR OrthoDB; EOG6QP146; -. DR BioCyc; HPY:HP0809-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR InterPro; IPR005503; FliL. DR Pfam; PF03748; FliL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 41 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 183 AA; 20365 MW; 552288C4A2501AFC CRC64; MAEEQENTAQ QPPKKSKALL FVIIGSVLVM LLLVGVIIML LMGNKEESKE NASKNTQEVQ ANPMANKNQE AKEGSNIQQY LVLGPLYAID APFAVNLVSQ NGRRYLKASI SLELSNEKLL NEVKVKDTAI KDTIIEILSS KSVEEVVTNK GKNKLKDEIK SHLNSFLIDG FIKNVFFTDF IIQ // ID O25843_HELPY Unreviewed; 192 AA. AC O25843; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08300.1}; GN OrderedLocusNames=HP_1250 {ECO:0000313|EMBL:AAD08300.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08300.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08300.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08300.1; -; Genomic_DNA. DR PIR; B64676; B64676. DR RefSeq; NP_208042.1; NC_000915.1. DR RefSeq; WP_000846067.1; NC_018939.1. DR ProteinModelPortal; O25843; -. DR STRING; 85962.HP1250; -. DR PaxDb; O25843; -. DR EnsemblBacteria; AAD08300; AAD08300; HP_1250. DR GeneID; 898856; -. DR KEGG; heo:C694_06460; -. DR KEGG; hpy:HP1250; -. DR PATRIC; 20593877; VBIHelPyl33062_1309. DR OMA; FPSTKGK; -. DR OrthoDB; EOG6RFZZS; -. DR BioCyc; HPY:HP1250-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR003646; SH3-like_bac-type. DR Pfam; PF08239; SH3_3; 1. DR SMART; SM00287; SH3b; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 129 192 SH3b. {ECO:0000259|SMART:SM00287}. SQ SEQUENCE 192 AA; 21397 MW; 4BEFB01159B73A31 CRC64; MKTEMKSSLK LFMRPLLVVL AFMLLYALVH AALGFYVKKD SAPISPNVEK TETERQNGVL SPKQEEANAT TTATEESPTK DTAPPLDTAA QKQETKQEQE KENEPKQDSV PPVQNNQKTP TTPLMGKKPL EYKVAVSGVN VRAFPSTKGK ILGLLLKNKS VKVLEIQNDW AEIEFSHETK GYVFLKLLKK AE // ID O26108_HELPY Unreviewed; 39 AA. AC O26108; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08629.1}; GN OrderedLocusNames=HP_1590 {ECO:0000313|EMBL:AAD08629.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08629.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08629.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08629.1; -; Genomic_DNA. DR PIR; F64718; F64718. DR RefSeq; NP_208381.1; NC_000915.1. DR RefSeq; WP_001862547.1; NC_018939.1. DR ProteinModelPortal; O26108; -. DR STRING; 85962.HP1590; -. DR PaxDb; O26108; -. DR EnsemblBacteria; AAD08629; AAD08629; HP_1590. DR GeneID; 899702; -. DR KEGG; heo:C694_08250; -. DR KEGG; hpy:HP1590; -. DR PATRIC; 20594615; VBIHelPyl33062_1675. DR BioCyc; HPY:HP1590-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR025217; DUF3944. DR Pfam; PF13099; DUF3944; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 37 DUF3944. {ECO:0000259|Pfam:PF13099}. SQ SEQUENCE 39 AA; 4636 MW; EE53CF01F4C1C909 CRC64; MAYRYDSDLE FLKRLSSSDL KDLFDALVYD EDGTLRMNE // ID O26097_HELPY Unreviewed; 215 AA. AC O26097; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE SubName: Full=ABC transporter, permease protein (YaeE) {ECO:0000313|EMBL:AAD08617.1}; GN OrderedLocusNames=HP_1577 {ECO:0000313|EMBL:AAD08617.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08617.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08617.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08617.1; -; Genomic_DNA. DR PIR; A64717; A64717. DR RefSeq; NP_208368.1; NC_000915.1. DR RefSeq; WP_000625456.1; NC_018939.1. DR ProteinModelPortal; O26097; -. DR STRING; 85962.HP1577; -. DR PaxDb; O26097; -. DR EnsemblBacteria; AAD08617; AAD08617; HP_1577. DR GeneID; 899714; -. DR KEGG; heo:C694_08170; -. DR KEGG; hpy:HP1577; -. DR PATRIC; 20594581; VBIHelPyl33062_1658. DR eggNOG; ENOG4108UMI; Bacteria. DR eggNOG; COG2011; LUCA. DR KO; K02072; -. DR OMA; ACSTFAG; -. DR OrthoDB; EOG6P073X; -. DR BioCyc; HPY:HP1577-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 14 37 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 58 80 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 86 105 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 142 164 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 184 207 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 10 203 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 215 AA; 23379 MW; 88F70A100319DC3B CRC64; MISQMLIQAT LETLYMVFVA SFLAVVFGLP LGVLLLVSKK GHLLNKPLLH KILDTSINMT RSFPFIILII LLLPLSRFLI GTSIGSSASI IPLAISAIPF VAKLFENSLM EVEHGKIETT LSLGASHLEV IKMMLLESLP SLVNNITITL ISLIGYSAMA GALGAGGLGD LAIRIGYQSY RGDVLFYAVV VIIVLVQIIQ SVGDYVVKRL RKHKY // ID O25591_HELPY Unreviewed; 264 AA. AC O25591; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07990.1}; GN OrderedLocusNames=HP_0937 {ECO:0000313|EMBL:AAD07990.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07990.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07990.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07990.1; -; Genomic_DNA. DR PIR; A64637; A64637. DR RefSeq; WP_000122211.1; NC_018939.1. DR ProteinModelPortal; O25591; -. DR STRING; 85962.HP0937; -. DR PaxDb; O25591; -. DR EnsemblBacteria; AAD07990; AAD07990; HP_0937. DR KEGG; heo:C694_04825; -. DR PATRIC; 20593177; VBIHelPyl33062_0974. DR eggNOG; COG1479; LUCA. DR OMA; IGSNTEF; -. DR OrthoDB; EOG6SBT49; -. DR BioCyc; HPY:HP0937-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011089; DUF1524. DR Pfam; PF07510; DUF1524; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 112 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 205 257 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 264 AA; 30754 MW; A577D60AA452E4EE CRC64; MSYSDLLMSI LTASFSSDIR EKMNELVDTL KDKGFSNMGQ DQVLKTCLLL IGKDTTFELK NFNKKNIKEI EENWEKITES IYDAAKLLET FGYVGYLGSA YILSSVAYFY FLNQKMDKND EEQALKFVRN AQITSYFTPS TDTKLNNIDN SMKDVKIFES FNHNLAKHQT SPLKITNDAI EEMMCSSSHA RVFPILQILY PHLKYKTTTF HIDHIYPKSK FKKENKKLDK DFYGWGNYLF NLQLLEGAEN QAKKDKNPEI WLKE // ID O24987_HELPY Unreviewed; 95 AA. AC O24987; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07265.1}; GN OrderedLocusNames=HP_0187 {ECO:0000313|EMBL:AAD07265.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07265.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07265.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07265.1; -; Genomic_DNA. DR PIR; C64543; C64543. DR RefSeq; WP_010875452.1; NC_018939.1. DR ProteinModelPortal; O24987; -. DR DIP; DIP-3267N; -. DR IntAct; O24987; 9. DR MINT; MINT-159439; -. DR STRING; 85962.HP0187; -. DR PaxDb; O24987; -. DR EnsemblBacteria; AAD07265; AAD07265; HP_0187. DR KEGG; heo:C694_00930; -. DR PATRIC; 20591597; VBIHelPyl33062_0198. DR eggNOG; COG1479; LUCA. DR OMA; ISQKKMQ; -. DR OrthoDB; EOG61P70T; -. DR BioCyc; HPY:HP0187-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004919; DUF262. DR Pfam; PF03235; DUF262; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 4 81 DUF262. {ECO:0000259|Pfam:PF03235}. SQ SEQUENCE 95 AA; 11193 MW; 155E2585FD12EE86 CRC64; MVVAKNEDNK KLYDIIDGQQ RTTTIFMLLH VLANKQNEKD KQETRKYLYQ KGELKLEVAP KNQSFFKTLL EAAEKENISQ KKMQTPRASK IFLKF // ID O25395_HELPY Unreviewed; 767 AA. AC O25395; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE SubName: Full=Iron(III) dicitrate transport protein (FecA) {ECO:0000313|EMBL:AAD14886.1}; GN OrderedLocusNames=HP_0686 {ECO:0000313|EMBL:AAD14886.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14886.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14886.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell outer membrane CC {ECO:0000256|RuleBase:RU003357}. CC -!- SIMILARITY: Belongs to the TonB-dependent receptor family. CC {ECO:0000256|RuleBase:RU003357}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14886.1; -; Genomic_DNA. DR PIR; F64605; F64605. DR RefSeq; NP_207480.1; NC_000915.1. DR RefSeq; WP_000822057.1; NC_018939.1. DR ProteinModelPortal; O25395; -. DR STRING; 85962.HP0686; -. DR PaxDb; O25395; -. DR EnsemblBacteria; AAD14886; AAD14886; HP_0686. DR GeneID; 899311; -. DR KEGG; heo:C694_03540; -. DR KEGG; hpy:HP0686; -. DR PATRIC; 20592657; VBIHelPyl33062_0717. DR eggNOG; ENOG4108ENF; Bacteria. DR eggNOG; COG4772; LUCA. DR KO; K16091; -. DR OMA; ELYYAPI; -. DR OrthoDB; EOG6G7QZW; -. DR BioCyc; HPY:HP0686-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR Gene3D; 2.40.170.20; -; 2. DR InterPro; IPR012910; Plug_dom. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF07715; Plug; 1. DR Pfam; PF00593; TonB_dep_Rec; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU003357}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW TonB box {ECO:0000256|RuleBase:RU003357}. FT DOMAIN 47 160 Plug. {ECO:0000259|Pfam:PF07715}. FT DOMAIN 498 765 TonB_dep_Rec. {ECO:0000259|Pfam:PF00593}. SQ SEQUENCE 767 AA; 87698 MW; 1ACF3F23D99F841C CRC64; MKRILVSLAV LSHSAHAVKT HNLERVEASG VANDKEAPLS WRSKEVRNYM GSRTVISNKQ LTKSANQSIE EALQNVPGVH IRNATGIGAV PSFSVRGFGG GSSGHSNTAM VLVNGIPIYV APYVDISIPI FPVTFQSVDR ISVTKGGESV RYGPNVFGGV INVITKGIPT KWESQVSERA TFWGKSENGG FFNQNSKNLD KSLANNMLFD TYLRTGGMMN KHFGIQAQAN WLKGQGFRYN SPTNIQNYML DSLYQINDSN KITAFFQYYN YFMADPGSLG IEAYNQNRFQ NNRPNNNKSG RAKRWGAVYQ NFFGDTDKIG GDFTFSYYGH DMSRDFQFDS NFLNVNTNPK LGPVYTDQNY PGFFIFDHLR RYIMNAFEPN LNLVVNTNKV KQTFNVGMRF MTMDMYFRLD QSTCEKTDIF NGVCRMPPFV LSKKPSNNQN LFNNYTAVWL SDKIELFDSK LVITPGLRYT FLNYNNKEPE KHDFSVWNIT KKRQNEWSPA LNIGYKPMEN WIWYANYRRS FIPPQHTMLG ITRTNYNQIF NEIEVGQRYS YKNLLSFNTN YFVIFAKRYY AGGYSPQPIN ARSQGVELEL YYAPIRGLQF HVAYTYIDAR ITSNADDIAY YFTGIVNKPF DIKGKRLPYV SPNQFIFDMM YTYKHTTFGI SSYFYSRAYS SMLNQAKSQT VCLPLNPEYT GGLEYGCNSV GLLPLYFVLN VQVSSVLWQS GRHKITGSLQ INNLFNMKYY FRGIGTSPTG REPAPGRSIT AYLNYEF // ID O25567_HELPY Unreviewed; 201 AA. AC O25567; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07959.1}; GN OrderedLocusNames=HP_0909 {ECO:0000313|EMBL:AAD07959.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07959.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07959.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07959.1; -; Genomic_DNA. DR PIR; E64633; E64633. DR RefSeq; NP_207701.1; NC_000915.1. DR RefSeq; WP_000613266.1; NC_018939.1. DR ProteinModelPortal; O25567; -. DR DIP; DIP-3581N; -. DR IntAct; O25567; 12. DR MINT; MINT-164078; -. DR STRING; 85962.HP0909; -. DR REBASE; 56836; Hpy26695ORF4685P. DR PaxDb; O25567; -. DR EnsemblBacteria; AAD07959; AAD07959; HP_0909. DR GeneID; 899438; -. DR KEGG; heo:C694_04680; -. DR KEGG; hpy:HP0909; -. DR PATRIC; 20593119; VBIHelPyl33062_0945. DR OMA; NNEIAWE; -. DR OrthoDB; EOG625JX3; -. DR BioCyc; HPY:HP0909-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 201 AA; 23552 MW; 16C772209211E97B CRC64; MIPTQLNEIA EFLKTNPYNL SQPLQDGRLN SSVNEEEILN IIKDYFPIQL PKAREWWDFS FKKNDIFYPV NITTTKTADN LNGKLGIYYA LCGLLPTFNN EIAWEKYFQK LHKDLGKNTN RDYYFLIISK NDPKDVFINS LKGIQTLQPN NLPFQCKWDN NREIIQRDFD GSKNSILSAL AKSVELRVYL AFKEVFGEFF E // ID O25466_HELPY Unreviewed; 775 AA. AC O25466; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 107. DE SubName: Full=Penta-phosphate guanosine-3'-pyrophosphohydrolase (SpoT) {ECO:0000313|EMBL:AAD07822.1}; GN OrderedLocusNames=HP_0775 {ECO:0000313|EMBL:AAD07822.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07822.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07822.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- FUNCTION: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' CC diphosphate) is a mediator of the stringent response that CC coordinates a variety of cellular activities in response to CC changes in nutritional abundance. {ECO:0000256|RuleBase:RU003847}. CC -!- SIMILARITY: Belongs to the relA/spoT family. CC {ECO:0000256|RuleBase:RU003847}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07822.1; -; Genomic_DNA. DR PIR; G64616; G64616. DR RefSeq; NP_207568.1; NC_000915.1. DR RefSeq; WP_001002218.1; NC_018939.1. DR ProteinModelPortal; O25466; -. DR DIP; DIP-3141N; -. DR IntAct; O25466; 22. DR MINT; MINT-159335; -. DR STRING; 85962.HP0775; -. DR PaxDb; O25466; -. DR EnsemblBacteria; AAD07822; AAD07822; HP_0775. DR GeneID; 899341; -. DR KEGG; heo:C694_03980; -. DR KEGG; hpy:HP0775; -. DR PATRIC; 20592839; VBIHelPyl33062_0808. DR eggNOG; ENOG4105CWR; Bacteria. DR eggNOG; COG0317; LUCA. DR KO; K00951; -. DR KO; K01139; -. DR OMA; TIHTTIF; -. DR OrthoDB; EOG6SV551; -. DR BioCyc; HPY:HP0775-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0015969; P:guanosine tetraphosphate metabolic process; IEA:InterPro. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR004811; RelA/Spo_fam. DR InterPro; IPR007685; RelA_SpoT. DR InterPro; IPR004095; TGS. DR InterPro; IPR012676; TGS-like. DR Pfam; PF13328; HD_4; 1. DR Pfam; PF04607; RelA_SpoT; 1. DR Pfam; PF02824; TGS; 1. DR SMART; SM00471; HDc; 1. DR SMART; SM00954; RelA_SpoT; 1. DR SUPFAM; SSF81271; SSF81271; 1. DR TIGRFAMs; TIGR00691; spoT_relA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD07822.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 60 180 HDc. {ECO:0000259|SMART:SM00471}. FT DOMAIN 265 375 RelA_SpoT. {ECO:0000259|SMART:SM00954}. SQ SEQUENCE 775 AA; 89186 MW; 23FDE7092F785496 CRC64; MNEIDKSVDI GFLRILDVIK KVTTPKGGIE ILRTLIDFTP KIENALNLAA KSHKGQYRKS GEPYIVHPIC VASLVAFCGG DEAMVCAALL HDVVEDTPCK IETIEQEFGQ DVANLVDALT KITEIRKEEL GVSSQDPRMV VSALTFRKIL ISAIQDPRAL VVKISDRLHN MLTLDALPHD KQVRISKETL AVYAPIASRL GMSSIKNELE DKSFYYIYPE EYKNIKEYLH KNKQSLLLKL NAFASKLEKK LFDSGFSHSD FKLVTRVKRP YSIYLKMQRK GAVNIDEILD LLAIRILLKN PIDCYKVLGI IHLNFKPIVS RFKDYIALPK ENGYKTIHTT IFDESSVYEV QIRTFDMHMG AEYGNSAHWK YKAGGVDHED HHEGMRWLQN FKYHDSDLKN DPKEFYELAK NDLYREDIVV FSPHGDTYTL PVGAIALDFA YMVHSDLGDK ATDAYINSKK ALLNQELRSG DVVKIIKGDK IIPRFIWMDQ LKTSKAKNHL RIQRRNRLKE VDTKSMINIL ATFFGRSVFE DMDLKDYKNF EERLTDCGVE TTLTEAMKSF ENLAKLTEEI ENKVFSLKED AILEYQEMSL WTRGLRYLGF KTNVLNFLAP NRQWQCKELE HFSVCSSNAL EIKQVLLNDC CYPKYGDEII AIVTDLKDPK AIAHHKFCKK AMAEVDAKVP MVYIEWHKRD RTIYKMMFYL GEKKSVLAGL LTFLNRNECN IVGVSYLGYK DKYSSHCEVS FEIATDKADW IRALINRKYQ DRIVELSSLD DAYES // ID O24870_HELPY Unreviewed; 711 AA. AC O24870; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp2) {ECO:0000313|EMBL:AAD07106.1}; GN OrderedLocusNames=HP_0025 {ECO:0000313|EMBL:AAD07106.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07106.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07106.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07106.1; -; Genomic_DNA. DR PIR; A64523; A64523. DR RefSeq; NP_206827.1; NC_000915.1. DR RefSeq; WP_000726314.1; NC_018939.1. DR ProteinModelPortal; O24870; -. DR DIP; DIP-3454N; -. DR IntAct; O24870; 6. DR MINT; MINT-175029; -. DR STRING; 85962.HP0025; -. DR PaxDb; O24870; -. DR EnsemblBacteria; AAD07106; AAD07106; HP_0025. DR GeneID; 899110; -. DR KEGG; heo:C694_00115; -. DR KEGG; hpy:HP0025; -. DR PATRIC; 20591243; VBIHelPyl33062_0023. DR OMA; EHYDSIT; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP0025-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 711 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158538. SQ SEQUENCE 711 AA; 77665 MW; 9D00CE9D171CBD3E CRC64; MKKKFLSLTL GSLLVSALSA EDNGFFVSAG YQIGESAQMV KNTKGIQDLS DSYERLNNLL TSYSALNTLI RQSADPNAIN NARGNLNASA KNLINDKKNS PAYQAVLLAL NAAAGLWQVM SYSISVCGPG SDKNKNGGVQ TFENVPSNGG TTIACDSFYE PGKWSGISTE NYAKINKAYQ IIQKAFGASG QDIPALSDTK ELNFEIKGKK NDSVQPGERW KFPWTNGKFV SVKWVNGKYE EIKEDIKVSN NAQELLKQAS TILTTLNEAC PWLSNGGAGN VAGGNSLWAG IDKGDGSACG IFKNEISAIQ DMIKNAEIAV EQSKIVTANA QNQHNLDTGK AFNPYKDANF AQSMFANARA QAEILNRAQA VVKDFERIPA AFVKDSLGVC HEKGSDGNLR GTPSGTVTSN TWGAGCAYVG ETVTNLKNSI AHFGDQAERI HNARNLAYTL ANFSGQYKKL GEHYDSITAA LSSLPDAQSL QNVVSKKTNP NSPQGIQDNY YIDSNIHSQV QSRSQELGSN PFRRAGLIAA STTNNGAMNG IGFQVGYKQF FGKNKRWGAR YYGFVDYNHT YNKSQFFNSD SDVWTYGVGS DLLVNFINDK ATKHNKISFG AFGGIQLAGT SWLNSQYVNL ANVNNYYKAK INTSNFQFLF NLGLRTNLAR NKRIGADHSA QHGMELGVKI PTINTNYYSL LGTTLQYRRL YSVYLNYVFA Y // ID O25753_HELPY Unreviewed; 84 AA. AC O25753; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08183.1}; GN OrderedLocusNames=HP_1128 {ECO:0000313|EMBL:AAD08183.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08183.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08183.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08183.1; -; Genomic_DNA. DR PIR; H64660; H64660. DR ProteinModelPortal; O25753; -. DR IntAct; O25753; 1. DR STRING; 85962.HP1128; -. DR PaxDb; O25753; -. DR PRIDE; O25753; -. DR EnsemblBacteria; AAD08183; AAD08183; HP_1128. DR PATRIC; 20593601; VBIHelPyl33062_1180. DR BioCyc; HPY:HP1128-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 84 AA; 9575 MW; CC6F05FDDBFE9F2A CRC64; MSKSAIFVVS GFLAFLLYAL LLYGLLLERH NKEAEKILLD LGKKNEQVID LNLEDLPSDE KKDEKIAEKA EEKKDEKVVE KNAN // ID O25305_HELPY Unreviewed; 293 AA. AC O25305; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07648.1}; GN OrderedLocusNames=HP_0583 {ECO:0000313|EMBL:AAD07648.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07648.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07648.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07648.1; -; Genomic_DNA. DR PIR; G64592; G64592. DR RefSeq; NP_207378.1; NC_000915.1. DR RefSeq; WP_010875498.1; NC_018939.1. DR ProteinModelPortal; O25305; -. DR DIP; DIP-3061N; -. DR IntAct; O25305; 4. DR MINT; MINT-163438; -. DR STRING; 85962.HP0583; -. DR PaxDb; O25305; -. DR PRIDE; O25305; -. DR EnsemblBacteria; AAD07648; AAD07648; HP_0583. DR GeneID; 900215; -. DR KEGG; hpy:HP0583; -. DR PATRIC; 20592441; VBIHelPyl33062_0609. DR OMA; PKGFHLA; -. DR OrthoDB; EOG6SR907; -. DR BioCyc; HPY:HP0583-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT SIGNAL 1 16 {ECO:0000256|SAM:SignalP}. FT CHAIN 17 293 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158555. FT TRANSMEM 188 206 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 293 AA; 32996 MW; 15A0820EAB94C886 CRC64; MRLLFLLLSA AFMLLAEEKI SLNDDAPIKL VHWQNALKEV QPDSNAPATP PIKAVQTTLT FETPFNKTPK IMEVEGQKVI VLKNAKLDSK KTMDFKEASL NALEMFSYQN DIYLLSKKAK VELEIQASNS KDKKRLRFLF LPKGFHLAPP PNLKEKSQQT NLAQKDTNEQ PQSPLNTLEL KPPLNLSHAY KALAVIAALL LILYVIKKKI VPTQGSFSAK DFKLEISVLG RVDANHKIIS IETNKERYLV LLSDKYGLLL DKISPKTSKE ELIKEAENNI KNSKLGNLYA GKF // ID O25019_HELPY Unreviewed; 390 AA. AC O25019; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07301.1}; GN OrderedLocusNames=HP_0233 {ECO:0000313|EMBL:AAD07301.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07301.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07301.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07301.1; -; Genomic_DNA. DR PIR; A64549; A64549. DR RefSeq; NP_207031.1; NC_000915.1. DR RefSeq; WP_001197179.1; NC_018939.1. DR ProteinModelPortal; O25019; -. DR IntAct; O25019; 1. DR STRING; 85962.HP0233; -. DR PaxDb; O25019; -. DR EnsemblBacteria; AAD07301; AAD07301; HP_0233. DR GeneID; 899172; -. DR KEGG; heo:C694_01175; -. DR KEGG; hpy:HP0233; -. DR PATRIC; 20591691; VBIHelPyl33062_0244. DR eggNOG; ENOG4106032; Bacteria. DR eggNOG; COG0754; LUCA. DR OMA; SKFVSHR; -. DR OrthoDB; EOG66XB93; -. DR BioCyc; HPY:HP0233-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR005494; GSPS_pre-ATP-grasp-like_dom. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF03738; GSP_synth; 1. DR SUPFAM; SSF52440; SSF52440; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 12 388 GSP_synth. {ECO:0000259|Pfam:PF03738}. SQ SEQUENCE 390 AA; 45432 MW; AB9187FAF1410471 CRC64; MQVIPLKPLD NKTLEEIGLD WHTNDDMSSY IADEMVVVSQ KEADAYYDAC NELYDMFVET AEEAIQNDRF FELDIPNALI PMIKQSFEEE VHWHIYGRFD LAGGLDGKPI KLLEFNADTP TMLYETAVIQ WALLKANGYD ENKQFNNLYE ALGENFKRMV TLGEDTSRFE EMYEGWKILF SSVRGNIEEE RTMRFLQDAA QSVGFETDFS YIDEVEFNIE EGVFKNGLNY EFLFKLIPWE NIAIDEPELA LLMQGMMENK NTIFLNPAYT ILFQSKRFLK LLWDRYPNHP LLLETSYEPL ANKKQIKKVA FGREGANSEI FEASMQSLLK TDGVYSNHKP VYQEFYELNS HNGLYYQPNV FFAYESCALG FRKGGLILDN FSKFVSHRLQ // ID O25169_HELPY Unreviewed; 268 AA. AC O25169; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Transposase-like protein, PS3IS {ECO:0000313|EMBL:AAD07479.1}; GN OrderedLocusNames=HP_0413 {ECO:0000313|EMBL:AAD07479.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07479.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07479.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07479.1; -; Genomic_DNA. DR RefSeq; WP_000867413.1; NC_018939.1. DR ProteinModelPortal; O25169; -. DR IntAct; O25169; 1. DR MINT; MINT-184818; -. DR STRING; 85962.HP0413; -. DR PaxDb; O25169; -. DR EnsemblBacteria; AAD07479; AAD07479; HP_0413. DR KEGG; heo:C694_02105; -. DR PATRIC; 20592077; VBIHelPyl33062_0428. DR eggNOG; COG0675; LUCA. DR KO; K07496; -. DR OMA; ACSCEIN; -. DR OrthoDB; EOG60GRXV; -. DR BioCyc; HPY:HP0413-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR021027; Transposase_put_HTH. DR Pfam; PF12323; HTH_OrfB_IS605; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 47 HTH_OrfB_IS605. FT {ECO:0000259|Pfam:PF12323}. SQ SEQUENCE 268 AA; 31743 MW; 442E6D4AE15BF706 CRC64; MKVNKGFKFR LYPTKEQQDK LQHCFFVYNQ AYNIGLNELQ EQYETNKDSP PKERKYKKSS ELDNAIKQCL RARDLPFSAV IAQQARMNVE RALKDAFKVK NRGFPKFKNS KSAKQSFSWN NQGFSIKESD DECFKTFTLM KMPLLMRMHR RLPPNFKVKQ ISISCSHRKY FVSFSVEYEQ DITPIKNTKN GVGLDLNILD TACSCEINNH DKLTDFKQYQ TDMKELLGIE IDEELDTKRL IPTYSKLYSL KKYSKKFKRL QRKQSRRC // ID O25047_HELPY Unreviewed; 80 AA. AC O25047; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07344.1}; GN OrderedLocusNames=HP_0268 {ECO:0000313|EMBL:AAD07344.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07344.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07344.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2MX0} RP STRUCTURE BY NMR. RX PubMed=25916841; DOI=10.1093/nar/gkv348; RA Lee K.Y., Lee K.Y., Kim J.H., Lee I.G., Lee S.H., Sim D.W., Won H.S., RA Lee B.J.; RT "Structure-based functional identification of Helicobacter pylori RT HP0268 as a nuclease with both DNA nicking and RNase activities."; RL Nucleic Acids Res. 43:5194-5207(2015). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07344.1; -; Genomic_DNA. DR PIR; D64553; D64553. DR RefSeq; NP_207066.1; NC_000915.1. DR RefSeq; WP_000780038.1; NC_018939.1. DR PDB; 2MX0; NMR; -; A=1-80. DR PDBsum; 2MX0; -. DR ProteinModelPortal; O25047; -. DR DIP; DIP-3592N; -. DR IntAct; O25047; 3. DR MINT; MINT-188290; -. DR STRING; 85962.HP0268; -. DR PaxDb; O25047; -. DR EnsemblBacteria; AAD07344; AAD07344; HP_0268. DR GeneID; 899188; -. DR KEGG; heo:C694_01355; -. DR KEGG; hpy:HP0268; -. DR PATRIC; 20591763; VBIHelPyl33062_0279. DR eggNOG; ENOG410613S; Bacteria. DR eggNOG; ENOG411272A; LUCA. DR OMA; YMYEVHI; -. DR OrthoDB; EOG6KMBBN; -. DR BioCyc; HPY:HP0268-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2MX0}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 80 AA; 9458 MW; 0DCE371998E83EB5 CRC64; MKLVLAKNTR KSDAKSVELE DLYHEFSEDK RSIFYFAPTN AHKDMLKAVD FFKEKGHTAY LDEVRVSTDE KDFLYELHII // ID O25962_HELPY Unreviewed; 367 AA. AC O25962; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase (RfaJ) {ECO:0000313|EMBL:AAD08459.1}; GN OrderedLocusNames=HP_1416 {ECO:0000313|EMBL:AAD08459.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08459.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08459.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08459.1; -; Genomic_DNA. DR PIR; H64696; H64696. DR RefSeq; NP_208207.1; NC_000915.1. DR RefSeq; WP_000380989.1; NC_018939.1. DR ProteinModelPortal; O25962; -. DR STRING; 85962.HP1416; -. DR CAZy; GT8; Glycosyltransferase Family 8. DR PaxDb; O25962; -. DR EnsemblBacteria; AAD08459; AAD08459; HP_1416. DR GeneID; 899878; -. DR KEGG; heo:C694_07320; -. DR KEGG; hpy:HP1416; -. DR PATRIC; 20594229; VBIHelPyl33062_1484. DR eggNOG; COG1442; LUCA. DR KO; K03279; -. DR OMA; FKTHIRS; -. DR OrthoDB; EOG6TJ7V7; -. DR BioCyc; HPY:HP1416-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR002495; Glyco_trans_8. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01501; Glyco_transf_8; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD08459.1}. SQ SEQUENCE 367 AA; 42849 MW; D85700C24EC31D69 CRC64; MDTQNLPDQI IPIFMSFDKN YALGASVSLY SLLSHASRHT SMIDFSPLNQ SNKLLGANIV YKIHCLVKGV TLEQQNKLLK TIAPFKKFAS LEFIHINSLD HSIESYLNKS CSKRYGGLLV LCRLLLASLF PNYSKIISID ADTVFLGDVA SAYFALDNDP TKSLGMVRDT FSHLSFEAFC DFCKRACKNF KIDFSRFSPD ELKRIHQGFN MGFLVAHLDR WRQDGFEKTA LEFLKTRGKD LFYPEQCLVN MVFWERILEL PIYYNCYSDF FKEHYPKNII MLHFIKYKPW RSVSSLNGRL ICYEAEASFW LANLFHTPFK NDFFKERLEM AKDQQMQSFK THIRSQTIRN YLGFRVKNIL KKVFKLS // ID O25601_HELPY Unreviewed; 120 AA. AC O25601; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08004.1}; GN OrderedLocusNames=HP_0947 {ECO:0000313|EMBL:AAD08004.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08004.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08004.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08004.1; -; Genomic_DNA. DR PIR; C64638; C64638. DR RefSeq; NP_207739.1; NC_000915.1. DR RefSeq; WP_000953818.1; NC_018939.1. DR ProteinModelPortal; O25601; -. DR DIP; DIP-3597N; -. DR IntAct; O25601; 7. DR MINT; MINT-160358; -. DR STRING; 85962.HP0947; -. DR PaxDb; O25601; -. DR PRIDE; O25601; -. DR EnsemblBacteria; AAD08004; AAD08004; HP_0947. DR GeneID; 899480; -. DR KEGG; hpy:HP0947; -. DR PATRIC; 20593205; VBIHelPyl33062_0984. DR OMA; EKAINGC; -. DR OrthoDB; EOG69PQ54; -. DR BioCyc; HPY:HP0947-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 120 AA; 13588 MW; EAC2FA8BD7DC1064 CRC64; MLSVLSGDDL KLYSKLSVYS AGSGMIGIDI DKRTFYKRAF AFTMKSLFGE NLLLFVKLKH SALTSKHMKG PLENRHHHSF TKNYEKAVNG CQKYFHIKLP EGAPSNFKSG SYMATMVVRF // ID O25269_HELPY Unreviewed; 114 AA. AC O25269; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Cag pathogenicity island protein (Cag15) {ECO:0000313|EMBL:AAD07602.1}; GN OrderedLocusNames=HP_0536 {ECO:0000313|EMBL:AAD07602.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07602.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07602.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07602.1; -; Genomic_DNA. DR PIR; H64586; H64586. DR RefSeq; NP_207332.1; NC_000915.1. DR RefSeq; WP_001863356.1; NC_018939.1. DR ProteinModelPortal; O25269; -. DR STRING; 85962.HP0536; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25269; -. DR PRIDE; O25269; -. DR EnsemblBacteria; AAD07602; AAD07602; HP_0536. DR GeneID; 898998; -. DR KEGG; hpy:HP0536; -. DR KO; K12100; -. DR OMA; IKPSFFY; -. DR OrthoDB; EOG6Q2SPW; -. DR BioCyc; HPY:HP0536-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 92 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 114 AA; 13596 MW; 70E6574B81108B0C CRC64; MKRPISKLKQ NFLQFKHSFN KHLDKYSLYY RLFNISSIVI GFLVALFSYG AGVILVYPIL FLFALIIKPS FFYYTTYLLL LVSLSIISKY YLLSHANFTM KLIILMTQWQ NWFL // ID O24907_HELPY Unreviewed; 85 AA. AC O24907; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07149.1}; GN OrderedLocusNames=HP_0078 {ECO:0000313|EMBL:AAD07149.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07149.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07149.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07149.1; -; Genomic_DNA. DR PIR; F64529; F64529. DR RefSeq; NP_206878.1; NC_000915.1. DR RefSeq; WP_000755201.1; NC_018939.1. DR ProteinModelPortal; O24907; -. DR STRING; 85962.HP0078; -. DR PaxDb; O24907; -. DR EnsemblBacteria; AAD07149; AAD07149; HP_0078. DR GeneID; 899109; -. DR KEGG; heo:C694_00380; -. DR KEGG; hpy:HP0078; -. DR PATRIC; 20591363; VBIHelPyl33062_0082. DR OMA; PSASWMK; -. DR OrthoDB; EOG60658G; -. DR BioCyc; HPY:HP0078-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}. FT CHAIN 18 85 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157990. SQ SEQUENCE 85 AA; 9051 MW; 45114A56C2809C3C CRC64; MKKVFLGMAL AFSVSMAEKS GAFLGGGFQY SNLENQNTTR TPGANNNTPI DTSMFGSNKT APAQETQSAS KPDTKVNPSA SWMKK // ID O25288_HELPY Unreviewed; 56 AA. AC O25288; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07634.1}; GN OrderedLocusNames=HP_0564 {ECO:0000313|EMBL:AAD07634.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07634.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07634.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07634.1; -; Genomic_DNA. DR ProteinModelPortal; O25288; -. DR IntAct; O25288; 1. DR PaxDb; O25288; -. DR PRIDE; O25288; -. DR EnsemblBacteria; AAD07634; AAD07634; HP_0564. DR PATRIC; 20592401; VBIHelPyl33062_0589. DR OrthoDB; EOG6D2KZM; -. DR BioCyc; HPY:HP0564-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR031895; RHH_CopG. DR InterPro; IPR010985; Ribbon_hlx_hlx. DR Pfam; PF16777; RHH_7; 1. DR SUPFAM; SSF47598; SSF47598; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 56 AA; 6518 MW; 1F9BC5F91757445F CRC64; MTFYLSKDEH DVLRRLADEE VESVNSFVKR HILKTIIYKK GTNQDSSINC DSSSRL // ID O25381_HELPY Unreviewed; 449 AA. AC O25381; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07738.1}; GN OrderedLocusNames=HP_0670 {ECO:0000313|EMBL:AAD07738.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07738.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07738.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07738.1; -; Genomic_DNA. DR PIR; F64603; F64603. DR RefSeq; NP_207464.1; NC_000915.1. DR RefSeq; WP_000633152.1; NC_018939.1. DR ProteinModelPortal; O25381; -. DR STRING; 85962.HP0670; -. DR PaxDb; O25381; -. DR EnsemblBacteria; AAD07738; AAD07738; HP_0670. DR GeneID; 898989; -. DR KEGG; heo:C694_03465; -. DR KEGG; hpy:HP0670; -. DR PATRIC; 20592625; VBIHelPyl33062_0701. DR OMA; NKDITAI; -. DR OrthoDB; EOG6HQSX7; -. DR BioCyc; HPY:HP0670-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 449 AA; 53177 MW; DB28F8841EEA5D37 CRC64; MITSLGGVEY FERQCLAFLK NPQTNPQNEQ YIPGVFSYQE NKISFSFLVL GEIEEIHSLQ YQTLYIVDNK KRYTLYKLYD RIILGHTLGY SAPITLYYEW LFDDWIDPEK IMGDRFVCRT NYLESFFTTK KHLLPDTLFK VDESGCESYH ENNDKDFILQ SFYIQNDFLS QRYEKDKIKA KSNLIPKRQN RLLTYQFDLS LECNIIFETL EKLALIAGAI KNFFILIYAH SNFDIQIDYI QFKLSNKDIT AIRNTYKKDK KSMEIDLYGI AINFQRIDNF SVILEKWIVF YIKDNRDFQL ASILDIINKK DPIIHLYLDM FVLISMIESF LKKPQQTKLH EKLSEFFKIS LSRTKCDQTK NYFNDKCQED LIQQIVDCRN SLAHGRSLKL DTNKATDISH AFIDFKQIVI EFFFGEIGLS DFITNNFGFL NKVKLRNPPK TEKITEPNR // ID O24950_HELPY Unreviewed; 481 AA. AC O24950; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=Conserved hypothetical iron-sulfur protein {ECO:0000313|EMBL:AAD07206.1}; GN OrderedLocusNames=HP_0138 {ECO:0000313|EMBL:AAD07206.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07206.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07206.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07206.1; -; Genomic_DNA. DR PIR; B64537; B64537. DR RefSeq; NP_206938.1; NC_000915.1. DR RefSeq; WP_000417304.1; NC_018939.1. DR ProteinModelPortal; O24950; -. DR STRING; 85962.HP0138; -. DR PaxDb; O24950; -. DR DNASU; 898776; -. DR EnsemblBacteria; AAD07206; AAD07206; HP_0138. DR GeneID; 898776; -. DR KEGG; heo:C694_00680; -. DR KEGG; hpy:HP0138; -. DR PATRIC; 20591493; VBIHelPyl33062_0146. DR eggNOG; ENOG4107QR9; Bacteria. DR eggNOG; COG1139; LUCA. DR KO; K18929; -. DR OMA; HCPVYDK; -. DR OrthoDB; EOG6JTC5N; -. DR BioCyc; HPY:HP0138-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0019516; P:lactate oxidation; IEA:InterPro. DR Gene3D; 3.40.50.10420; -; 2. DR InterPro; IPR004452; 4Fe-4S-bd. DR InterPro; IPR024569; 4Fe-4S-bd_C. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR024185; FTHF_cligase-like. DR InterPro; IPR009051; Helical_ferredxn. DR InterPro; IPR003741; LUD_dom. DR Pfam; PF02589; DUF162; 1. DR Pfam; PF11870; DUF3390; 1. DR Pfam; PF13183; Fer4_8; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR TIGRFAMs; TIGR00273; TIGR00273; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 2. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 305 335 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 355 386 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 481 AA; 54236 MW; B6D672B3826A46A8 CRC64; MEKYHSDQEY EEIITDQLGD MQLRENLRSA MDTLRANRKN LLKNRYSEWE NLRELGKEVK LKILSRLDEY LELFEKNATQ NGFKIHYAKD GDEANEIIYN LAKEKNIKRI LKQKSMASEE IGLNHYLKEK GIQAQETDLG ELIIQLINEH PVHIVVPAIH KNRKQIGKIF EEKLNAAYEE EPEKLNAIAR KHMRKEFESF KMGISGVNFA IANEGAIWLV ENEGNGRMST TACDVHVAIC GIEKLVESFD DAAILNNLLA PSAVGVPITC YQNIITGPRK EGDLDGPKEA HIILLDNNRS NILADEKYYR ALSCIRCGTC LNHCPVYDKI GGHAYLSTYP GPIGVVVSPQ LFGLNNYGHI PNLCSLCGRC TEVCPVEIPL AELIRDLRSD KVGEGRGVIK GAKSTQHSGM EKFSMKMFAK MASDGAKWRF QLKMAQFFSP LGKLLAPILP LVKEWASVRT LPNMDTSLHA KVQHLEGVIY E // ID O24995_HELPY Unreviewed; 91 AA. AC O24995; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07274.1}; GN OrderedLocusNames=HP_0203 {ECO:0000313|EMBL:AAD07274.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07274.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07274.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07274.1; -; Genomic_DNA. DR PIR; C64545; C64545. DR ProteinModelPortal; O24995; -. DR STRING; 85962.HP0203; -. DR PaxDb; O24995; -. DR PRIDE; O24995; -. DR EnsemblBacteria; AAD07274; AAD07274; HP_0203. DR PATRIC; 20591627; VBIHelPyl33062_0213. DR OMA; CHQAFDS; -. DR OrthoDB; EOG6SNDWM; -. DR BioCyc; HPY:HP0203-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 91 AA; 10584 MW; 7124058B80121A5E CRC64; MKKVVFLLLV ILGGLEAQST YCSDHCEGTP DSRIPPMGFH FSFVHSVKYY LQDPQERDHK LEKCHQAFDS TLKVNFITNL LKRIASMRKW L // ID O25774_HELPY Unreviewed; 177 AA. AC O25774; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 90. DE SubName: Full=Cell filamentation protein (Fic) {ECO:0000313|EMBL:AAD08198.1}; GN OrderedLocusNames=HP_1159 {ECO:0000313|EMBL:AAD08198.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08198.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08198.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2F6S} RP X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS). RA Cuff M.E., Xu X., Zheng H., Edwards A., Savchenko A., Joachimiak A.; RT "Structure of cell filamentation protein (fic) from Helicobacter RT pylori."; RL Submitted (NOV-2005) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08198.1; -; Genomic_DNA. DR PIR; G64664; G64664. DR RefSeq; NP_207950.1; NC_000915.1. DR RefSeq; WP_000549876.1; NC_018939.1. DR PDB; 2F6S; X-ray; 2.50 A; A/B=1-177. DR PDBsum; 2F6S; -. DR ProteinModelPortal; O25774; -. DR SMR; O25774; 1-177. DR STRING; 85962.HP1159; -. DR PaxDb; O25774; -. DR EnsemblBacteria; AAD08198; AAD08198; HP_1159. DR GeneID; 899919; -. DR KEGG; heo:C694_05985; -. DR KEGG; hpy:HP1159; -. DR PATRIC; 20593669; VBIHelPyl33062_1213. DR eggNOG; ENOG4105MZU; Bacteria. DR eggNOG; COG2184; LUCA. DR KO; K04095; -. DR OMA; REQNISK; -. DR OrthoDB; EOG69976Q; -. DR BioCyc; HPY:HP1159-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.10.3290.10; -; 1. DR InterPro; IPR003812; Fido. DR Pfam; PF02661; Fic; 1. DR SUPFAM; SSF140931; SSF140931; 1. DR PROSITE; PS51459; FIDO; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2F6S}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 26 155 Fido. {ECO:0000259|PROSITE:PS51459}. FT REGION 100 103 Phosphate 2 binding. FT {ECO:0000213|PDB:2F6S}. FT BINDING 2 2 Phosphate 1. {ECO:0000213|PDB:2F6S}. SQ SEQUENCE 177 AA; 20533 MW; 933118EA9526E3AA CRC64; MHLDRQSLEK AKHLIQSGLI DTIEVGTIKG LQEIHRFLFE GLYEFAGKIR DKNIAKGNFR FANCLYLDLI LPRIESMPQN NFNQIVEKYV EMNIAHPFLE GNGRATRIWL DLLLKKELKK IVLWDRIDKA AYLSAMERSP VNDLEIKTLL KKHLSSNTND PLTLIKGITQ SYYYEGL // ID O25201_HELPY Unreviewed; 232 AA. AC O25201; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07520.1}; GN OrderedLocusNames=HP_0454 {ECO:0000313|EMBL:AAD07520.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07520.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07520.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07520.1; -; Genomic_DNA. DR PIR; F64576; F64576. DR RefSeq; NP_207252.1; NC_000915.1. DR RefSeq; WP_010875488.1; NC_000915.1. DR ProteinModelPortal; O25201; -. DR STRING; 85962.HP0454; -. DR PaxDb; O25201; -. DR PRIDE; O25201; -. DR DNASU; 898883; -. DR EnsemblBacteria; AAD07520; AAD07520; HP_0454. DR GeneID; 898883; -. DR KEGG; hpy:HP0454; -. DR PATRIC; 20592167; VBIHelPyl33062_0472. DR eggNOG; ENOG4105PJD; Bacteria. DR eggNOG; ENOG4111ZEG; LUCA. DR OrthoDB; EOG6FV852; -. DR BioCyc; HPY:HP0454-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 232 AA; 27447 MW; 398AB5A07CA27668 CRC64; MELKLMGQKR MNKSNKLVII NRAIPGGGKT SLIKQIEELA KSLGHSISVH STDEYFIQTD EEGIRHYVVD KKKLNEYHQN NQEAFKQALE NRIDIVVCDN TNFESWQSKP YTDMAREFGY KILLIDFKNR HLETPMDYGW DVAQCIKKPR GIAKHYDYDF YLERVLVEPQ DYEKQNRELS LKALEFLKYN FDFDVIFYSF GEQLMPILTR MLVSVSKSHR KRLENYGKDI KT // ID O25035_HELPY Unreviewed; 38 AA. AC O25035; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07323.1}; GN OrderedLocusNames=HP_0253 {ECO:0000313|EMBL:AAD07323.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07323.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07323.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07323.1; -; Genomic_DNA. DR PIR; E64551; E64551. DR STRING; 85962.HP0253; -. DR PaxDb; O25035; -. DR PRIDE; O25035; -. DR EnsemblBacteria; AAD07323; AAD07323; HP_0253. DR PATRIC; 20591733; VBIHelPyl33062_0264. DR BioCyc; HPY:HP0253-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 38 AA; 4462 MW; F224A8F70B0BD9C6 CRC64; MKNTNTKEIK NTRMKKGYSQ YHALKKGLLK TLCFLAFL // ID O24962_HELPY Unreviewed; 270 AA. AC O24962; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Conserved hypothetical membrane protein {ECO:0000313|EMBL:AAD07217.1}; GN OrderedLocusNames=HP_0151 {ECO:0000313|EMBL:AAD07217.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07217.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07217.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07217.1; -; Genomic_DNA. DR PIR; G64538; G64538. DR RefSeq; NP_206950.1; NC_000915.1. DR RefSeq; WP_010875446.1; NC_000915.1. DR ProteinModelPortal; O24962; -. DR IntAct; O24962; 1. DR STRING; 85962.HP0151; -. DR PaxDb; O24962; -. DR PRIDE; O24962; -. DR EnsemblBacteria; AAD07217; AAD07217; HP_0151. DR GeneID; 899137; -. DR KEGG; hpy:HP0151; -. DR PATRIC; 20591523; VBIHelPyl33062_0161. DR OMA; WFVASVR; -. DR OrthoDB; EOG62C9D3; -. DR BioCyc; HPY:HP0151-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 49 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 108 128 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 135 156 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 214 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 242 263 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 270 AA; 30247 MW; 4BBBAA237B31A353 CRC64; MIKSLNSYPN GYNKAMGFLK VFKHDALGQV GNVVVGNFLI TLTILAVCFS SQSAEETTML TLSYTLFFVL GAFLLVAISV GAIKNLNALF SKRGVLSFSL PVSLESLLLP KILLPMVFFI FSLFWFVASV RLGYSLFNAQ SSVLFILHTA LKTFVLKPTK TLGIALFLGL VLMKFLFVLS VLNAARIKKA RFLLGGLLFI LVGVVLELAF NSLLPLMSSS LSINEGFYYF LQQQELQENK YYLLWGVDFL KILLLYGMIR YLLMHKLELD // ID O24964_HELPY Unreviewed; 91 AA. AC O24964; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07226.1}; GN OrderedLocusNames=HP_0155 {ECO:0000313|EMBL:AAD07226.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07226.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07226.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07226.1; -; Genomic_DNA. DR PIR; C64539; C64539. DR RefSeq; NP_206954.1; NC_000915.1. DR RefSeq; WP_000146222.1; NC_018939.1. DR ProteinModelPortal; O24964; -. DR DIP; DIP-3431N; -. DR IntAct; O24964; 1. DR MINT; MINT-159680; -. DR STRING; 85962.HP0155; -. DR PaxDb; O24964; -. DR EnsemblBacteria; AAD07226; AAD07226; HP_0155. DR GeneID; 899140; -. DR KEGG; heo:C694_00775; -. DR KEGG; hpy:HP0155; -. DR PATRIC; 20591531; VBIHelPyl33062_0165. DR OMA; LAYTHRV; -. DR OrthoDB; EOG6B0B04; -. DR BioCyc; HPY:HP0155-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 53 87 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 91 AA; 10716 MW; 6E7F13AA5290BEE7 CRC64; MASGLFENDG IKDNKARDFF YSHSSLIVFF LLLLGFGYYL GKLLFGGSSL EVYLDLRDKH ERLQQEITEL QSKNVRLQKR LFELKELRPR D // ID O25005_HELPY Unreviewed; 380 AA. AC O25005; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07286.1}; GN OrderedLocusNames=HP_0217 {ECO:0000313|EMBL:AAD07286.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07286.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07286.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07286.1; -; Genomic_DNA. DR PIR; A64547; A64547. DR RefSeq; NP_207015.1; NC_000915.1. DR RefSeq; WP_000523434.1; NC_000915.1. DR ProteinModelPortal; O25005; -. DR STRING; 85962.HP0217; -. DR PaxDb; O25005; -. DR DNASU; 899047; -. DR EnsemblBacteria; AAD07286; AAD07286; HP_0217. DR GeneID; 899047; -. DR KEGG; heo:C694_01095; -. DR KEGG; hpy:HP0217; -. DR PATRIC; 20591657; VBIHelPyl33062_0228. DR eggNOG; ENOG4108WDS; Bacteria. DR eggNOG; ENOG4111V8B; LUCA. DR KO; K13689; -. DR OMA; DRVIHPT; -. DR OrthoDB; EOG65TRPD; -. DR BioCyc; HPY:HP0217-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR010446; GalNAc_Trfase_b. DR Pfam; PF06306; CgtA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 380 AA; 44912 MW; 259A088E2160571B CRC64; MGLKNKIKGF IKERMPFVVR YVRSLKGAKN IYDEINHEIK EMLEAKKLHS LQEKALFNHD HQESVFLAIA SLNNESFIER NKSIYKNSSL NYNYGGGGHL EDRVIHPTLT LPNPTHSGYF DYDKKSQNPK SPLNPWAFIR VKNEIVTLEE SLFSMLPAIQ RGVIGFNDCD DGSKEVILEF CKKFPSFIPI SYPYEVMLKD CPSLWHQLYH YSNYTLSFIP KNEWVIKIDG DHVYDAKKLY ESFYIPKSIK EVVMYSRINF VVQDFEVFVC NSGDFGFLDA WGDQWLFYND CEPFEIWQHN DDIYEILKLK DKHHIKDKEL MQWHFPLAKK RRNAIVDNDL IPLKEFKKHH ADLIGTKIEE SMLDEKRILE MYQKFNLAER // ID O26008_HELPY Unreviewed; 191 AA. AC O26008; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08528.1}; GN OrderedLocusNames=HP_1473 {ECO:0000313|EMBL:AAD08528.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08528.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08528.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08528.1; -; Genomic_DNA. DR PIR; A64704; A64704. DR RefSeq; NP_208264.1; NC_000915.1. DR RefSeq; WP_001203580.1; NC_018939.1. DR ProteinModelPortal; O26008; -. DR STRING; 85962.HP1473; -. DR PaxDb; O26008; -. DR EnsemblBacteria; AAD08528; AAD08528; HP_1473. DR GeneID; 899819; -. DR KEGG; heo:C694_07625; -. DR KEGG; hpy:HP1473; -. DR PATRIC; 20594357; VBIHelPyl33062_1547. DR eggNOG; ENOG4105T34; Bacteria. DR eggNOG; COG1040; LUCA. DR KO; K02242; -. DR OMA; SFYSHSA; -. DR OrthoDB; EOG6VHZBX; -. DR BioCyc; HPY:HP1473-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.2020; -; 1. DR InterPro; IPR029057; PRTase-like. DR SUPFAM; SSF53271; SSF53271; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 191 AA; 21332 MW; E8758AEB94C26B3F CRC64; MRCLTCLKLS FKPLCPNCLN DLPLSLKVRV LEGVSVYSFY AYSEIEELIK SKYALIGSRI LPLLSQKAGA EFVKILQEQG LNIPLYGIAI DDKIKSFYSH SAALLKGFCQ GNLKPTYGRL RANNAVSYAG KSLEFRANNP RNFTFKGDES LDYFLLDDII TTGTTLKEAL KYLKTLNIKV HFAIALCSAD E // ID O25662_HELPY Unreviewed; 48 AA. AC O25662; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08072.1}; GN OrderedLocusNames=HP_1018 {ECO:0000313|EMBL:AAD08072.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08072.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08072.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08072.1; -; Genomic_DNA. DR PIR; B64647; B64647. DR ProteinModelPortal; O25662; -. DR STRING; 85962.HP1018; -. DR PaxDb; O25662; -. DR PRIDE; O25662; -. DR EnsemblBacteria; AAD08072; AAD08072; HP_1018. DR PATRIC; 20593371; VBIHelPyl33062_1066. DR BioCyc; HPY:HP1018-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}. FT CHAIN 18 48 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157811. SQ SEQUENCE 48 AA; 5425 MW; B9B6B8687F23AC43 CRC64; MKKTLFISLA LALSLNAGNI QIQSMPKVKE RVSVPSKDDT DLFLPRFY // ID O25871_HELPY Unreviewed; 346 AA. AC O25871; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08327.1}; GN OrderedLocusNames=HP_1284 {ECO:0000313|EMBL:AAD08327.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08327.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08327.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08327.1; -; Genomic_DNA. DR PIR; D64680; D64680. DR RefSeq; NP_208076.1; NC_000915.1. DR RefSeq; WP_000345564.1; NC_018939.1. DR ProteinModelPortal; O25871; -. DR STRING; 85962.HP1284; -. DR CAZy; GT9; Glycosyltransferase Family 9. DR PaxDb; O25871; -. DR EnsemblBacteria; AAD08327; AAD08327; HP_1284. DR GeneID; 898817; -. DR KEGG; heo:C694_06635; -. DR KEGG; hpy:HP1284; -. DR PATRIC; 20593947; VBIHelPyl33062_1344. DR eggNOG; ENOG4105M5K; Bacteria. DR eggNOG; COG0859; LUCA. DR OMA; RNDKLGD; -. DR OrthoDB; EOG67Q978; -. DR BioCyc; HPY:HP1284-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:InterPro. DR InterPro; IPR002201; Glyco_trans_9. DR Pfam; PF01075; Glyco_transf_9; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 346 AA; 39007 MW; DC4DDD4F7B57847A CRC64; MDFIGFEDLK CKDKENSQKV FVIRNDKLGD FILAIPALIA LKHAFLEKGK EVYLGVVVPS YTTPIALEFP FIDEVIIEDN HLSATLKSKP IDALIFLFSN FKNARLAFSL RKSIPYILAP KTKIYSWLYQ KSVRQSRSLC LKTEYEYNLD LIHAFCKDHN LPNAQLKKIA WKLKDKSKER SIIASKLNAD VGLLWIGVHM HSGGSSPVLP ASHFIKLIDC LHNNLSCEII LICGPGERKA TEELLKKIPF AHLYDTSHSL VDLAKLCANL SVYIGNASGP LHVNALFDNQ SIGFYPNELS ASIARWRPFN ERFLGITPPN GSNDMGLIDI EKEGEKIVGF INYRKM // ID O25266_HELPY Unreviewed; 218 AA. AC O25266; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Cag pathogenicity island protein (Cag11) {ECO:0000313|EMBL:AAD07598.1}; GN OrderedLocusNames=HP_0531 {ECO:0000313|EMBL:AAD07598.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07598.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07598.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07598.1; -; Genomic_DNA. DR PIR; C64586; C64586. DR RefSeq; NP_207327.1; NC_000915.1. DR RefSeq; WP_001000423.1; NC_018939.1. DR ProteinModelPortal; O25266; -. DR STRING; 85962.HP0531; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25266; -. DR EnsemblBacteria; AAD07598; AAD07598; HP_0531. DR GeneID; 900046; -. DR KEGG; heo:C694_02740; -. DR KEGG; hpy:HP0531; -. DR PATRIC; 20592337; VBIHelPyl33062_0557. DR KO; K12096; -. DR OMA; TEHHGPN; -. DR OrthoDB; EOG664CGT; -. DR BioCyc; HPY:HP0531-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 158 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 178 196 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 218 AA; 24685 MW; B9D8915B316A3F09 CRC64; MNDTTEHHGP NPLNAPPPSN SQSNDLLNLL DSLYPKGSLG EQRFHEALKN QEELKNILIE IEKLPQEKRY ELLMQIGQAK QRIMEAYAHS FLGYIGGLEH LLGLCMGGIF VLFAIYFVFL RTSKNMELVE SLKTKLKLQY FYYAFGVGAV LFFGLETIRS IYELYILGIG STNDKVLFVL KNICFIGMGY LIYKVIKVIG IKNFINGLFT SKKQGGAE // ID O24952_HELPY Unreviewed; 549 AA. AC O24952; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=L-lactate permease (LctP) {ECO:0000313|EMBL:AAD07208.1}; GN OrderedLocusNames=HP_0140 {ECO:0000313|EMBL:AAD07208.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07208.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07208.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07208.1; -; Genomic_DNA. DR PIR; D64537; D64537. DR RefSeq; NP_206940.1; NC_000915.1. DR RefSeq; WP_000398080.1; NC_018939.1. DR ProteinModelPortal; O24952; -. DR IntAct; O24952; 1. DR STRING; 85962.HP0140; -. DR PaxDb; O24952; -. DR EnsemblBacteria; AAD07208; AAD07208; HP_0140. DR GeneID; 900148; -. DR KEGG; heo:C694_00690; -. DR KEGG; hpy:HP0140; -. DR PATRIC; 20591497; VBIHelPyl33062_0148. DR eggNOG; ENOG4105DAA; Bacteria. DR eggNOG; COG1620; LUCA. DR KO; K03303; -. DR OMA; ALFVYKM; -. DR OrthoDB; EOG6Q8J3Z; -. DR BioCyc; HPY:HP0140-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro. DR GO; GO:0015129; F:lactate transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR003804; Lactate_perm. DR PANTHER; PTHR30003; PTHR30003; 1. DR Pfam; PF02652; Lactate_perm; 1. DR TIGRFAMs; TIGR00795; lctP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 34 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 41 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 94 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 115 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 167 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 197 216 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 223 245 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 251 268 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 289 310 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 362 381 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 401 421 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 433 452 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 459 482 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 488 509 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 521 547 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 549 AA; 59294 MW; 0567F7F1C76D2D01 CRC64; MEFYQVYDPL GHIWLSALVA LSPIALFFVS LIVFKLKGYS AGFLSLLLSI IIALFVYKMP AQMVSASFFY GFLYGLWPIA WIVIAAIFLY NLSVKSGYFE ILKESILTLT PDHRILVILI GFCFGSFLEG AIGFGGPVAI TAAILVGLGL NPLYAAGLCL IANTAPVAFG AVGIPITAMA SVVGIPELEI SQMVGRVLPI FSIGIPFFIV FLMDGFRGIR ETFPAVAVTG FSFAIAQFLS SNYLGPQLPD IISALVSLIA TTLFLKFWQP KRIFTSNGKE PTINTEKHHI CKVVVAWMPF VLLTITIIIW TQPWFKALFK EGGALAFSSF AFEFSSISQK IFKTVPIVTE ATNFPVVFKL PLILTTGTSI FLAAILSVFL LRVKISDAIG VFGATLKEMR LPILTIGVVL AFAYVANYSG MSATLALALA DTGHVFTFFS PVVGWLGVFL TGSDTSSNLL FGSLQMLIAT QLGLPEVLFL AANTSGGVVG KMISPQSIAI ACAAVGLVGK ESELFRFTVK YSIVLAIIMG IVFTLIAYVF PFIIPIIPK // ID O25391_HELPY Unreviewed; 168 AA. AC O25391; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD14887.1}; GN OrderedLocusNames=HP_0681 {ECO:0000313|EMBL:AAD14887.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD14887.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD14887.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD14887.1; -; Genomic_DNA. DR PIR; A64605; A64605. DR RefSeq; NP_207475.1; NC_000915.1. DR RefSeq; WP_000381669.1; NC_018939.1. DR ProteinModelPortal; O25391; -. DR STRING; 85962.HP0681; -. DR PaxDb; O25391; -. DR EnsemblBacteria; AAD14887; AAD14887; HP_0681. DR GeneID; 899310; -. DR KEGG; heo:C694_03510; -. DR KEGG; hpy:HP0681; -. DR PATRIC; 20592645; VBIHelPyl33062_0711. DR OMA; PKYSYYV; -. DR OrthoDB; EOG6BCSSK; -. DR BioCyc; HPY:HP0681-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 74 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 168 AA; 19176 MW; A1ECCBBAEB8D95E2 CRC64; MDTTKENLNG SKERLSDWEY RWAMALVYGG CISITTRIFY DINGSASDPL FDPKYSYYVW LVALIAALLS NLLFNPKGRS VGYLMIETWQ GFPKFFKAIF KARFFGAFYD AVLGSRLRDF YVMLLTMPFI AAIHEVSAYC GHPSNLLVEG LVILGFQGFL KLCAKWGW // ID O25267_HELPY Unreviewed; 29 AA. AC O25267; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07613.1}; GN OrderedLocusNames=HP_0533 {ECO:0000313|EMBL:AAD07613.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07613.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07613.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07613.1; -; Genomic_DNA. DR PIR; E64586; E64586. DR IntAct; O25267; 1. DR PRIDE; O25267; -. DR EnsemblBacteria; AAD07613; AAD07613; HP_0533. DR BioCyc; HPY:HP0533-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 29 AA; 3434 MW; CBCEA449E2698E8C CRC64; MLDVENKQKI SVQLTKFSLK NICLNQRQN // ID O25967_HELPY Unreviewed; 206 AA. AC O25967; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08473.1}; GN OrderedLocusNames=HP_1424 {ECO:0000313|EMBL:AAD08473.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08473.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08473.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08473.1; -; Genomic_DNA. DR PIR; H64697; H64697. DR RefSeq; NP_208215.1; NC_000915.1. DR RefSeq; WP_000671766.1; NC_018939.1. DR ProteinModelPortal; O25967; -. DR STRING; 85962.HP1424; -. DR PaxDb; O25967; -. DR EnsemblBacteria; AAD08473; AAD08473; HP_1424. DR GeneID; 899871; -. DR KEGG; heo:C694_07365; -. DR KEGG; hpy:HP1424; -. DR PATRIC; 20594247; VBIHelPyl33062_1493. DR OMA; LEPGFYY; -. DR OrthoDB; EOG6FNHN0; -. DR BioCyc; HPY:HP1424-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 206 AA; 23434 MW; 6B4319DFD7A7DD05 CRC64; MKFQIMSLLA TLLLASCLPP KGHHSGLVNL YIAHQGQSVR TYWRKVDRGV IAKHNEALKK DPKAKLKDPR GPLFMLGSER FMLLWKNRYA LAKPQSFRLE PGFYYLDSFS VETQKGVLQS APGYSYTKNG YDFKNNRPFF LAFEVKPDGK TILPSVELSL IKTPRGFLGV FLFDNNEKGT NAKWIEGSLN LKLKNASFKD AWGLEQ // ID O25518_HELPY Unreviewed; 33 AA. AC O25518; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07920.1}; GN OrderedLocusNames=HP_0847 {ECO:0000313|EMBL:AAD07920.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07920.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07920.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07920.1; -; Genomic_DNA. DR PIR; G64625; G64625. DR RefSeq; WP_001863406.1; NC_018939.1. DR ProteinModelPortal; O25518; -. DR STRING; 85962.HP0847; -. DR PaxDb; O25518; -. DR EnsemblBacteria; AAD07920; AAD07920; HP_0847. DR KEGG; heo:C694_04340; -. DR BioCyc; HPY:HP0847-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 33 AA; 3704 MW; FA3F52631C0DB943 CRC64; MSYETIAESN ESTVVAEFHS SNEKKALMRA KQS // ID O25491_HELPY Unreviewed; 108 AA. AC O25491; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07861.1}; GN OrderedLocusNames=HP_0811 {ECO:0000313|EMBL:AAD07861.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07861.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07861.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07861.1; -; Genomic_DNA. DR PIR; C64621; C64621. DR RefSeq; NP_207604.1; NC_000915.1. DR RefSeq; WP_000688953.1; NC_018939.1. DR ProteinModelPortal; O25491; -. DR STRING; 85962.HP0811; -. DR PaxDb; O25491; -. DR EnsemblBacteria; AAD07861; AAD07861; HP_0811. DR GeneID; 899355; -. DR KEGG; heo:C694_04155; -. DR KEGG; hpy:HP0811; -. DR PATRIC; 20592909; VBIHelPyl33062_0843. DR OMA; KPCEEIQ; -. DR OrthoDB; EOG6Q8J4R; -. DR BioCyc; HPY:HP0811-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 108 AA; 12842 MW; 12BAA4AAAE39863F CRC64; MKIFLSCKSL LIQRSLEFYL SDCLSPMEVC DLVLSDDEKL ETNKPLCFIE ERLRKPFTKQ SVKEDIKNFY RALKTSEKPC EEIQFSKEQK IKQLLEEYTH KLCQIISQ // ID O25022_HELPY Unreviewed; 123 AA. AC O25022; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 86. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07310.1}; GN OrderedLocusNames=HP_0236 {ECO:0000313|EMBL:AAD07310.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07310.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07310.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07310.1; -; Genomic_DNA. DR PIR; D64549; D64549. DR RefSeq; NP_207034.1; NC_000915.1. DR RefSeq; WP_001235932.1; NC_018939.1. DR ProteinModelPortal; O25022; -. DR STRING; 85962.HP0236; -. DR PaxDb; O25022; -. DR EnsemblBacteria; AAD07310; AAD07310; HP_0236. DR GeneID; 900017; -. DR KEGG; heo:C694_01190; -. DR KEGG; hpy:HP0236; -. DR PATRIC; 20591697; VBIHelPyl33062_0247. DR eggNOG; ENOG4105XIT; Bacteria. DR eggNOG; ENOG411251B; LUCA. DR OMA; LYKNPRG; -. DR OrthoDB; EOG63RGT4; -. DR BioCyc; HPY:HP0236-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR Gene3D; 1.10.760.10; -; 1. DR InterPro; IPR009056; Cyt_c-like_dom. DR Pfam; PF13442; Cytochrome_CBB3; 1. DR SUPFAM; SSF46626; SSF46626; 1. DR PROSITE; PS51007; CYTC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 25 112 Cytochrome c. FT {ECO:0000259|PROSITE:PS51007}. SQ SEQUENCE 123 AA; 14439 MW; F736F0690730BFD8 CRC64; MRLFIALVLF WWWLSLNAKE ADFISDLEYG MALYKNPRGV ACAKCHGIKG EQQEITFYYE KGEKKILYAP KINHLDFKTF KDALSLGKGM MPKYNLNLEE IQAIYLYIIS LEHKEERKDS PKP // ID O25997_HELPY Unreviewed; 350 AA. AC O25997; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE SubName: Full=Cytochrome c551 peroxidase {ECO:0000313|EMBL:AAD08503.1}; GN OrderedLocusNames=HP_1461 {ECO:0000313|EMBL:AAD08503.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08503.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08503.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08503.1; -; Genomic_DNA. DR PIR; E64702; E64702. DR RefSeq; NP_208252.1; NC_000915.1. DR RefSeq; WP_000748319.1; NC_018939.1. DR ProteinModelPortal; O25997; -. DR STRING; 85962.HP1461; -. DR PaxDb; O25997; -. DR EnsemblBacteria; AAD08503; AAD08503; HP_1461. DR GeneID; 899832; -. DR KEGG; heo:C694_07565; -. DR KEGG; hpy:HP1461; -. DR PATRIC; 20594333; VBIHelPyl33062_1535. DR eggNOG; ENOG4105CA0; Bacteria. DR eggNOG; COG1858; LUCA. DR KO; K00428; -. DR OMA; YKFANVG; -. DR OrthoDB; EOG6VF30V; -. DR BioCyc; HPY:HP1461-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0004601; F:peroxidase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.760.10; -; 2. DR InterPro; IPR009056; Cyt_c-like_dom. DR InterPro; IPR004852; Di-haem_cyt_c_peroxidsae. DR InterPro; IPR026259; MauG/Cytc_peroxidase. DR Pfam; PF03150; CCP_MauG; 1. DR Pfam; PF00034; Cytochrom_C; 1. DR PIRSF; PIRSF000294; Cytochrome-c_peroxidase; 1. DR SUPFAM; SSF46626; SSF46626; 2. DR PROSITE; PS51007; CYTC; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Oxidoreductase {ECO:0000313|EMBL:AAD08503.1}; KW Peroxidase {ECO:0000313|EMBL:AAD08503.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 350 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158066. FT DOMAIN 66 176 Cytochrome c. FT {ECO:0000259|PROSITE:PS51007}. FT DOMAIN 220 327 Cytochrome c. FT {ECO:0000259|PROSITE:PS51007}. SQ SEQUENCE 350 AA; 38798 MW; 9F55768C2621E81C CRC64; MKKSILLGVC LAFSCAHALN DLELIKKARE SQLEPMPMGK ALKEYQIKKT RDVGIGTKNS EIMTSAQVEL GKMLYFDPRI STSYLVSCNT CHNLGLGGVD LVPSAIGSQW KKNPHLLSSP TVYNSVFNDV QFWDGRVTHL NEQAQGPIQS SFEMGADPKV VVEKINSMPG YVKLFRKAYG SKVKIDFKLI ADSIAMFEAT LITPSRYDDF LRGNPKALSK AEKEGLNLFI SKGCVACHNG INLGGTMQPF GVVKPYKFAN VGDFKGDKNG LVKVPTLRNI TETMPYFHNG QFWDVKDAIK EMGSIQLGIE ISDEEAKKIE TFFGALRGKK PKIIYPELPI MTDKTPKPSF // ID O24918_HELPY Unreviewed; 277 AA. AC O24918; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_0092 {ECO:0000313|EMBL:AAD07163.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07163.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07163.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07163.1; -; Genomic_DNA. DR PIR; D64531; D64531. DR RefSeq; NP_206892.1; NC_000915.1. DR RefSeq; WP_000233875.1; NC_018939.1. DR ProteinModelPortal; O24918; -. DR IntAct; O24918; 2. DR STRING; 85962.HP0092; -. DR REBASE; 56863; M.Hpy26695ORF450P. DR PaxDb; O24918; -. DR DNASU; 899114; -. DR EnsemblBacteria; AAD07163; AAD07163; HP_0092. DR GeneID; 899114; -. DR KEGG; heo:C694_00450; -. DR KEGG; hpy:HP0092; -. DR PATRIC; 20591395; VBIHelPyl33062_0097. DR eggNOG; ENOG4105CEC; Bacteria. DR eggNOG; COG0863; LUCA. DR KO; K00571; -. DR OMA; SNEIARP; -. DR OrthoDB; EOG6FV84T; -. DR BioCyc; HPY:HP0092-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 40 254 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 277 AA; 31816 MW; 6EB17888876D2F91 CRC64; MVIAHSNEIA RPIFKSQDQL FTLYQGDCNE VLPQFENQFD LIFADPPYFL SNDGLSIQSG KIVSVNKGDW DKEDGINGID EFNYQWINNA KKALKDTGSL LISGTYHNIF SLGCVLQKLD FKILNLITWQ KTNPPPNFSC RYLTHSAEQI IWARKSRKHK HVFNYEVLKK INNDKQMRDV WSFPAIAPWE KVNGKHPTQK PLALLVRLLL MASDENSLIG DPFSGSSTTG IAANLLKREF IGIEKESEFI KISMDRKIEL DARYKEIRSK IKDLNHQ // ID O25562_HELPY Unreviewed; 99 AA. AC O25562; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07951.1}; GN OrderedLocusNames=HP_0902 {ECO:0000313|EMBL:AAD07951.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07951.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07951.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07951.1; -; Genomic_DNA. DR PIR; F64632; F64632. DR RefSeq; NP_207695.1; NC_000915.1. DR RefSeq; WP_000454259.1; NC_018939.1. DR ProteinModelPortal; O25562; -. DR DIP; DIP-3579N; -. DR IntAct; O25562; 3. DR MINT; MINT-168306; -. DR STRING; 85962.HP0902; -. DR PaxDb; O25562; -. DR DNASU; 899432; -. DR EnsemblBacteria; AAD07951; AAD07951; HP_0902. DR GeneID; 899432; -. DR KEGG; heo:C694_04630; -. DR KEGG; hpy:HP0902; -. DR PATRIC; 20593097; VBIHelPyl33062_0934. DR eggNOG; ENOG410674Z; Bacteria. DR eggNOG; COG1917; LUCA. DR OMA; CFEKLHI; -. DR OrthoDB; EOG6GJC12; -. DR BioCyc; HPY:HP0902-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 2.60.120.10; -; 1. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR SUPFAM; SSF51182; SSF51182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 99 AA; 11030 MW; B5990771845682AC CRC64; MEVVHFLEGV CFEKLHIEVL NENSSHKEIR ICMPKGAVMD KHKAPGAISV QVLEGKIVFE VGDEKIEMPK GALISLEAQV LHRLDALENS VIRLSLSKK // ID O24885_HELPY Unreviewed; 381 AA. AC O24885; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 95. DE SubName: Full=GDP-D-mannose dehydratase (RfbD) {ECO:0000313|EMBL:AAD07112.1}; GN OrderedLocusNames=HP_0044 {ECO:0000313|EMBL:AAD07112.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07112.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07112.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07112.1; -; Genomic_DNA. DR PIR; D64525; D64525. DR RefSeq; NP_206845.1; NC_000915.1. DR RefSeq; WP_000659810.1; NC_018939.1. DR ProteinModelPortal; O24885; -. DR SMR; O24885; 3-366. DR IntAct; O24885; 1. DR MINT; MINT-4064005; -. DR STRING; 85962.HP0044; -. DR PaxDb; O24885; -. DR EnsemblBacteria; AAD07112; AAD07112; HP_0044. DR GeneID; 899160; -. DR KEGG; heo:C694_00200; -. DR KEGG; hpy:HP0044; -. DR PATRIC; 20591287; VBIHelPyl33062_0045. DR eggNOG; ENOG4105C0K; Bacteria. DR eggNOG; COG1089; LUCA. DR KO; K01711; -. DR OMA; QIVVRID; -. DR OrthoDB; EOG6V7BNH; -. DR BioCyc; HPY:HP0044-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008446; F:GDP-mannose 4,6-dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070401; F:NADP+ binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019673; P:GDP-mannose metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00955; GDP_Man_dehydratase; 1. DR InterPro; IPR006368; GDP_Man_deHydtase. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF16363; GDP_Man_Dehyd; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01472; gmd; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 7 355 NAD(P)-bd_dom. FT {ECO:0000259|Pfam:PF16363}. SQ SEQUENCE 381 AA; 43925 MW; B4E32F9B67F1748B CRC64; MKEKIALITG VTGQDGSYLA EYLLNLGYEV HGLKRRSSSI NTSRIDHLYE DLHSDHKRRF FLHYGDMTDS SNLIHLIATT KPTEIYNLAA QSHVKVSFET PEYTANADGI GTLRILEAMR ILGLEKKTRF YQASTSELYG EVLETPQNEN TPFNPRSPYA VAKMYAFYIT KNYREAYNLF AVNGILFNHE SRVRGETFVT RKITRAASAI AYNLTDCLYL GNLDAKRDWG HAKDYVKMMH LMLQAPIPQD YVIATGKTTS VRDFVKMSFE FIGINLEFQN TGIKEIGLIK SVDEKRANAL KLNLSHLKKG QIVVRIDERY FRPTEVDLLL GDPTKAEKEL DWVREYDLKE LVKDMLEYDL KECQKNLYLQ DGGYILRNFY E // ID O25303_HELPY Unreviewed; 372 AA. AC O25303; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 89. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07646.1}; GN OrderedLocusNames=HP_0580 {ECO:0000313|EMBL:AAD07646.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07646.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07646.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07646.1; -; Genomic_DNA. DR PIR; D64592; D64592. DR RefSeq; NP_207375.1; NC_000915.1. DR RefSeq; WP_000433759.1; NC_018939.1. DR ProteinModelPortal; O25303; -. DR STRING; 85962.HP0580; -. DR PaxDb; O25303; -. DR EnsemblBacteria; AAD07646; AAD07646; HP_0580. DR GeneID; 899282; -. DR KEGG; heo:C694_02990; -. DR KEGG; hpy:HP0580; -. DR PATRIC; 20592433; VBIHelPyl33062_0605. DR eggNOG; ENOG41083Q0; Bacteria. DR eggNOG; COG4692; LUCA. DR OMA; FIDIVYT; -. DR OrthoDB; EOG69972C; -. DR BioCyc; HPY:HP0580-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.120.10.10; -; 1. DR InterPro; IPR011040; Sialidases. DR Pfam; PF13088; BNR_2; 1. DR SUPFAM; SSF50939; SSF50939; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 75 342 Sialidases. {ECO:0000259|Pfam:PF13088}. SQ SEQUENCE 372 AA; 42919 MW; 1140808527EF40DA CRC64; MEPSRNRLKH AAFFVGLFIV LFLIIMKRQT PPYAFMRNQT LVTQTPPYFT QLTIPKPNDA LSVHASSLIS LPNDNLLSAY FSGTKEGARD VKISANLFDS KTNRWSEAFI ILTKEELSHY SHEYIKKLGN PLLFLHDDKI LLFVVGVSMG GWATSKIYQL ESALEPIRFK FARKLSLSPF LNLSHLIRNK PLSTTDGGFM LPLYHELATQ YPLLLKFDQQ NNPRELLRPN ALNHQLQPSL TPFKDCAIMA FRNHSFKDSL MLETCKTPTA WQKPMLTNLK NLNDALNLIN LNEELYLIHN PSDSSLRRKE LWLSKLENSN SFKTLKVLDK ANEVSYPSYS LNPHFIDIVY TYNRSHIKHI RFNMAYLKSL LK // ID O25450_HELPY Unreviewed; 210 AA. AC O25450; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Molybdopterin biosynthesis protein (MoeB) {ECO:0000313|EMBL:AAD07804.1}; GN OrderedLocusNames=HP_0755 {ECO:0000313|EMBL:AAD07804.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07804.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07804.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07804.1; -; Genomic_DNA. DR PIR; C64614; C64614. DR RefSeq; NP_207548.1; NC_000915.1. DR RefSeq; WP_001863447.1; NC_018939.1. DR ProteinModelPortal; O25450; -. DR IntAct; O25450; 2. DR STRING; 85962.HP0755; -. DR PaxDb; O25450; -. DR PRIDE; O25450; -. DR EnsemblBacteria; AAD07804; AAD07804; HP_0755. DR GeneID; 900226; -. DR KEGG; hpy:HP0755; -. DR PATRIC; 20592799; VBIHelPyl33062_0788. DR eggNOG; ENOG4105CUZ; Bacteria. DR eggNOG; COG1179; LUCA. DR OMA; TIIYKVH; -. DR OrthoDB; EOG6D2KVP; -. DR BioCyc; HPY:HP0755-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008641; F:small protein activating enzyme activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000594; ThiF_NAD_FAD-bd. DR Pfam; PF00899; ThiF; 1. DR SUPFAM; SSF69572; SSF69572; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 5 126 ThiF. {ECO:0000259|Pfam:PF00899}. SQ SEQUENCE 210 AA; 23847 MW; 95AC653A6B21ADA3 CRC64; MFKNDFEKIR QQRVLICGVG GVGGFALDAL YRVGIGQITI IDKDVFDVTN QNRQIGSERI GESKVLVLQD LYKGIQALNL HIDEAFLNSF NFRDYDYILD CMDDLPIKTS LAIKCQNFAY GKFISSMGSA KRLNPKHIQV GSVWESYGDK FGRKFRDFLK KRRFKGDFKV VFSPEIPHCI ELGSFNAVTA SFGLQIASEV VQDIINDKRK // ID O25384_HELPY Unreviewed; 426 AA. AC O25384; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07739.1}; GN OrderedLocusNames=HP_0673 {ECO:0000313|EMBL:AAD07739.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07739.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07739.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07739.1; -; Genomic_DNA. DR PIR; A64604; A64604. DR ProteinModelPortal; O25384; -. DR STRING; 85962.HP0673; -. DR PaxDb; O25384; -. DR PRIDE; O25384; -. DR EnsemblBacteria; AAD07739; AAD07739; HP_0673. DR PATRIC; 20592631; VBIHelPyl33062_0704. DR OMA; CENTICD; -. DR OrthoDB; EOG66B474; -. DR BioCyc; HPY:HP0673-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 426 AA; 49169 MW; 4363D0CF1A7B1603 CRC64; MAVRFGIIFI SDSIDDYKAK QLRSILERKK ECNFIWFNES SAIIHNTPKV FEGESFFDHL FVSAKITAFV VSTNESDTIF NLKNYLLVLA KNLNNRDIWY CENTICDKKG TYNIEIELVS NANDFRGVFG EVLGIVKDTF GDLLQLLTNL KNKEIEFNFH KKINYGLPFG IIFIASNSDN PIDIDNKTKK LKSCFRDDES NCFIDCPITI EDYLILDNLK SCFVIQNKPN VTLFDNDEND RPFNLKRYLL GLKEKLGFEP TGIFYCENAN THKIELIGND SDFREVLLEF SENIPKAPNE LPQFLTNFKN SKIPNGNISF SPPKNSPSIS SYALSDKIKR EVRDTFDRYL WHGYSKIPQE KRIAKIKEQV KEEIKLNPSF RNYRVDSEQN RKINEIAEGL KSGKIIGKKV IANAFDLNAS LLFYYS // ID O25126_HELPY Unreviewed; 21 AA. AC O25126; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07439.1}; GN OrderedLocusNames=HP_0359 {ECO:0000313|EMBL:AAD07439.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07439.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07439.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07439.1; -; Genomic_DNA. DR PIR; G64564; G64564. DR IntAct; O25126; 1. DR STRING; 85962.HP0359; -. DR PaxDb; O25126; -. DR PRIDE; O25126; -. DR EnsemblBacteria; AAD07439; AAD07439; HP_0359. DR BioCyc; HPY:HP0359-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 21 AA; 2278 MW; 6C44D65B53C1DDB8 CRC64; MVENSGIEPL TSCVQSRRSP S // ID O25402_HELPY Unreviewed; 713 AA. AC O25402; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Hydantoin utilization protein A (HyuA) {ECO:0000313|EMBL:AAD07746.1}; GN OrderedLocusNames=HP_0695 {ECO:0000313|EMBL:AAD07746.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07746.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07746.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07746.1; -; Genomic_DNA. DR PIR; G64606; G64606. DR RefSeq; NP_207489.1; NC_000915.1. DR RefSeq; WP_000650637.1; NC_018939.1. DR ProteinModelPortal; O25402; -. DR DIP; DIP-3122N; -. DR IntAct; O25402; 4. DR MINT; MINT-167832; -. DR STRING; 85962.HP0695; -. DR PaxDb; O25402; -. DR EnsemblBacteria; AAD07746; AAD07746; HP_0695. DR GeneID; 900002; -. DR KEGG; heo:C694_03590; -. DR KEGG; hpy:HP0695; -. DR PATRIC; 20592679; VBIHelPyl33062_0728. DR eggNOG; ENOG4108IEA; Bacteria. DR eggNOG; COG0145; LUCA. DR KO; K01473; -. DR OMA; IHLNTHR; -. DR OrthoDB; EOG6PS5QX; -. DR BioCyc; HPY:HP0695-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR InterPro; IPR008040; Hydant_A_N. DR InterPro; IPR002821; Hydantoinase_A. DR Pfam; PF05378; Hydant_A_N; 1. DR Pfam; PF01968; Hydantoinase_A; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 9 197 Hydant_A_N. {ECO:0000259|Pfam:PF05378}. SQ SEQUENCE 713 AA; 78533 MW; 2BABB2A475F47D08 CRC64; MKDARVQVMG IDAGGTMTDT FFVKENGSFV VGKAQSNPED ESLAIYNSSQ DALSHWKSDV SKVYPELVTC VYSGTAMLNR VVQRRGMEVG LICNKGFEQM HSMGRALQSY LGYALEERLH INTHKYDDPL IPLKRIRGVT ERTDVKGQVV IPVRQEEVKV AVKELLEAGA KAIVICLLQS HKNAESERIV RDIALKEIEK LGKNIPVFAS VDYYPQRKES HRMNTTILEA YAAEPSRQTL SKVSNRFKEH GAKFDLRVMA THGGTISWKA KELARTIVSG PIGGVIGSKL LGETLGYDNI ACSDIGGTSF DMALIVKSNF NIASDPDMAR LVLSLPLVAM DSVGAGAGSF VRIDPHSRSV KLGPDSAGYR VGTCWKDSGL DTVSVTDCHI VLGYLNPDNF LGGLIKLDVD RAKKHIKEQI ADPLGISVED AAAGVIELLD LELKEYLRSN ISAKGYSPSD FVCFSYGGAG PVHTYGYTEG LGFKDVVVPA WAAGFSAFGC ACADFEYRYD KSVDIAIPQY SSDKSKIDAC KIIQDAWDEL TLKVIEEFKI NGFSQKDVIL RPGYRMQYMG QLNDLEITSP VSKAASVADW EEIVKEYEKT YARVYSESAC SPELGFSVTG VIMRGVVATQ KPVIPVEKEH GATPPKEAKI GVRKFYRHKK WVDADVWQME KLLPGNEVIG PAIVESDATT FVIPKGFATR LDKHRLFHLK EIK // ID O25410_HELPY Unreviewed; 273 AA. AC O25410; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Outer membrane protein (Omp15) {ECO:0000313|EMBL:AAD07756.1}; GN OrderedLocusNames=HP_0706 {ECO:0000313|EMBL:AAD07756.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07756.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07756.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07756.1; -; Genomic_DNA. DR PIR; B64608; B64608. DR RefSeq; NP_207500.1; NC_000915.1. DR RefSeq; WP_000395375.1; NC_018939.1. DR ProteinModelPortal; O25410; -. DR DIP; DIP-3409N; -. DR IntAct; O25410; 1. DR MINT; MINT-185441; -. DR STRING; 85962.HP0706; -. DR PaxDb; O25410; -. DR EnsemblBacteria; AAD07756; AAD07756; HP_0706. DR GeneID; 899003; -. DR KEGG; heo:C694_03635; -. DR KEGG; hpy:HP0706; -. DR PATRIC; 20592697; VBIHelPyl33062_0737. DR OMA; NINWHAK; -. DR OrthoDB; EOG6DG2QD; -. DR BioCyc; HPY:HP0706-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}. FT CHAIN 24 273 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157735. SQ SEQUENCE 273 AA; 29929 MW; 0971E03F8C83ED45 CRC64; MEFMKKFVAL GLLSAVLSSS LLAEGDGVYI GTNYQLGQAR LNSNIYNTGD CTGSVVGCPP GLTANKHNPG GTNINWHAKY ANGALNGLGL NVGYKKFFQF KSFDMTSKWF GFRVYGLFDY GHATLGKQVY APNKIQLDMV SWGVGSDLLA DIIDNDNASF GIFGGVAIGG NTWKSSAANY WKEQIIEAKG PDVCTPTYCN PNAPYSTKTS TVAFQVWLNF GVRANIYKHN GVEFGVRVPL LINKFLSAGP NATNLYYHLK RDYSLYLGYN YTF // ID O25739_HELPY Unreviewed; 314 AA. AC O25739; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Pyruvate ferredoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:AAD08155.1}; GN OrderedLocusNames=HP_1111 {ECO:0000313|EMBL:AAD08155.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08155.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08155.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08155.1; -; Genomic_DNA. DR PIR; G64658; G64658. DR RefSeq; NP_207902.1; NC_000915.1. DR RefSeq; WP_000238135.1; NC_018939.1. DR ProteinModelPortal; O25739; -. DR STRING; 85962.HP1111; -. DR PaxDb; O25739; -. DR EnsemblBacteria; AAD08155; AAD08155; HP_1111. DR GeneID; 899647; -. DR KEGG; heo:C694_05730; -. DR KEGG; hpy:HP1111; -. DR PATRIC; 20593563; VBIHelPyl33062_1161. DR eggNOG; ENOG4105DDK; Bacteria. DR eggNOG; COG1013; LUCA. DR KO; K00170; -. DR OMA; GHAACAG; -. DR OrthoDB; EOG6CS02G; -. DR BioCyc; HPY:HP1111-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR011766; TPP_enzyme-bd_C. DR Pfam; PF02775; TPP_enzyme_C; 1. DR SUPFAM; SSF52518; SSF52518; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Pyruvate {ECO:0000313|EMBL:AAD08155.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 51 218 TPP_enzyme_C. {ECO:0000259|Pfam:PF02775}. SQ SEQUENCE 314 AA; 34956 MW; F968757CE377E4AA CRC64; MVKEVKTLKG FSQSAEKFQG SHLLCPGCGH GIIVREVLNA VDGPIVLGNS TGCLEVCSAV YPHTSWDVPW IHIGFENGST AISGVEAMYK ALTNKGRYQG QKPKFVAFGG DGASYDIGLQ FISGCMERGH DMTYICLDNE NYANTGGQRS GSTPLGASTS TTPAGSVSFG KKEKKKDIVN IMASHGVPYV AQLSPNKWKD MNKKIKTALD TEGPCFINAL SPCTTEWKFE SNKTIELADM AVDSLMFPLF EIFNGRELKI TYRPRNIIPV RDYLGAQKRF KHLFKKENEH IIEELQKDVN ERWEYLQRRE EAKV // ID O25026_HELPY Unreviewed; 381 AA. AC O25026; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 107. DE SubName: Full=Signal-transducing protein, histidine kinase (AtoS) {ECO:0000313|EMBL:AAD07313.1}; GN OrderedLocusNames=HP_0244 {ECO:0000313|EMBL:AAD07313.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07313.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07313.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains histidine kinase domain. CC {ECO:0000256|SAAS:SAAS00102782}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07313.1; -; Genomic_DNA. DR PIR; D64550; D64550. DR RefSeq; NP_207042.1; NC_000915.1. DR RefSeq; WP_000748581.1; NC_018939.1. DR ProteinModelPortal; O25026; -. DR DIP; DIP-3202N; -. DR IntAct; O25026; 5. DR MINT; MINT-181819; -. DR STRING; 85962.HP0244; -. DR PaxDb; O25026; -. DR EnsemblBacteria; AAD07313; AAD07313; HP_0244. DR GeneID; 899176; -. DR KEGG; heo:C694_01235; -. DR KEGG; hpy:HP0244; -. DR PATRIC; 20591713; VBIHelPyl33062_0255. DR eggNOG; ENOG4108EIR; Bacteria. DR eggNOG; COG0642; LUCA. DR KO; K07710; -. DR OMA; AIWVMNE; -. DR OrthoDB; EOG6G4VQG; -. DR BioCyc; HPY:HP0244-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|SAAS:SAAS00528924}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Kinase {ECO:0000256|SAAS:SAAS00529081, ECO:0000313|EMBL:AAD07313.1}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00528924}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|SAAS:SAAS00529081, KW ECO:0000313|EMBL:AAD07313.1}. FT DOMAIN 177 381 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 381 AA; 43656 MW; E5C3609D515007C2 CRC64; MKKSKHLKRP YLKRSHLKHS DKASSFKGLL KKEDNVISLE NFKPKESEDL LENFSNKKDM QELLGLLNQF ILQSYKVEKE FKDYKALYEW VIEILPQAIW VVNENGSFFY KNSLANQSHE VFNKAKLENF NTEIEHENKS YLVQQNSIQG KQIITATDIS AQKRQERLAS MGKISAHLAH EIRNPVGSIS LLASVLLKHA NEKTKPIVVE LQKALWRVER IIKATLLFSK GIQANRTKQS LKTLESDLKE ALNCYTYSKD IDFLFNFSDE EGFFDFDLMG IVLQNFLYNA IDAIEALEES EQGQVKIEAF IQNEFIVFTI IDNGKEVENK SALFEPFETT KLKGNGLGLA LSLQVVKAHE GSIALLENQE KTFEIKILNA S // ID O24904_HELPY Unreviewed; 139 AA. AC O24904; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07141.1}; GN OrderedLocusNames=HP_0064 {ECO:0000313|EMBL:AAD07141.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07141.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07141.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07141.1; -; Genomic_DNA. DR PIR; H64527; H64527. DR RefSeq; NP_206864.1; NC_000915.1. DR RefSeq; WP_000447902.1; NC_018939.1. DR ProteinModelPortal; O24904; -. DR DIP; DIP-3129N; -. DR IntAct; O24904; 1. DR MINT; MINT-171932; -. DR STRING; 85962.HP0064; -. DR PaxDb; O24904; -. DR DNASU; 899098; -. DR EnsemblBacteria; AAD07141; AAD07141; HP_0064. DR GeneID; 899098; -. DR KEGG; heo:C694_00305; -. DR KEGG; hpy:HP0064; -. DR PATRIC; 20591329; VBIHelPyl33062_0066. DR OMA; FANDGYG; -. DR OrthoDB; EOG6W9X97; -. DR BioCyc; HPY:HP0064-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.1580.10; -; 1. DR InterPro; IPR018958; SMI1/KNR4-like_dom. DR Pfam; PF09346; SMI1_KNR4; 1. DR SMART; SM00860; SMI1_KNR4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 17 134 SMI1_KNR4. {ECO:0000259|SMART:SM00860}. SQ SEQUENCE 139 AA; 16102 MW; 3B0589F6AB2DC1A5 CRC64; METIPANSEL NWEFVEPLNE KALSGLEERL KIGFSDAFKD FVKRSNYGFS QWRSFVVGNK SYTFKHVLNF NLEGLFIDFM QSLKEWLEPE EIIFANDGYG GYYLLNTATD VVLFLDTDDG SKHALLHLKM FLKKLESRG // ID O25694_HELPY Unreviewed; 422 AA. AC O25694; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08106.1}; GN OrderedLocusNames=HP_1054 {ECO:0000313|EMBL:AAD08106.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08106.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08106.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08106.1; -; Genomic_DNA. DR PIR; F64651; F64651. DR RefSeq; NP_207845.1; NC_000915.1. DR RefSeq; WP_010875588.1; NC_000915.1. DR ProteinModelPortal; O25694; -. DR STRING; 85962.HP1054; -. DR PaxDb; O25694; -. DR PRIDE; O25694; -. DR EnsemblBacteria; AAD08106; AAD08106; HP_1054. DR GeneID; 899589; -. DR KEGG; hpy:HP1054; -. DR PATRIC; 20593445; VBIHelPyl33062_1103. DR eggNOG; ENOG4107R7M; Bacteria. DR eggNOG; COG0739; LUCA. DR OMA; PEIMGLE; -. DR OrthoDB; EOG6358JT; -. DR BioCyc; HPY:HP1054-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 422 AA; 48295 MW; BB1F6220B4C9CE3F CRC64; MIFNALITKP RALSFSLNSK EGALNDNDGT LFWDLKKPIK IKIVAPKGIK RYDLKVTTQD NLILYEKENL VLDKPKSLEV PLTRPEIMGL EDKCLLYEIK ANDWSYANFF NGNKASFKQE VCVDTIKPSI TILSRSPSIA YGGSAIVVFE ALDKNLSQAF VRVKKKDFEA FRLLEFKQRN VFIALVPWSY KNKDFKAFIV AKDKAYNFNT APLLFKRKIH RLREKDIDLS ALKDKIAKQE KFQNDTEQAL LERFSNARPK DLEKIQKIAL EQGDFYKDFS HFQALKPLNG PFKMASNFLE NRRILKNNQV LFKFLHLGVD LIPGKDLSLA FDLSVKRVFK GEFDFYGNSL IHCYGLGLCV FLAHLKDDKS VGSSGLKLGS GLHLGMLLQG VFVRPNEWLN EQWIKTNITA PIEQAKRLLM KG // ID O26105_HELPY Unreviewed; 112 AA. AC O26105; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08628.1}; GN OrderedLocusNames=HP_1586 {ECO:0000313|EMBL:AAD08628.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08628.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08628.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08628.1; -; Genomic_DNA. DR PIR; B64718; B64718. DR ProteinModelPortal; O26105; -. DR PaxDb; O26105; -. DR PRIDE; O26105; -. DR EnsemblBacteria; AAD08628; AAD08628; HP_1586. DR BioCyc; HPY:HP1586-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 25 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 71 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 112 AA; 12873 MW; B0E7F8E3BE0BD3F9 CRC64; MFWSGCYCSF YGSCGWGFLS FFTPLFWLLL GSLLGWCSLL MKRTAKIARP MRKVIARYHI FLVLFASRSA FCFANRFACS NLYCSAFSFA SYFAFNFRRK VAIKTHAGTV TL // ID O25585_HELPY Unreviewed; 146 AA. AC O25585; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07979.1}; GN OrderedLocusNames=HP_0931 {ECO:0000313|EMBL:AAD07979.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07979.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07979.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07979.1; -; Genomic_DNA. DR PIR; C64636; C64636. DR RefSeq; WP_010875564.1; NC_018939.1. DR ProteinModelPortal; O25585; -. DR STRING; 85962.HP0931; -. DR PaxDb; O25585; -. DR EnsemblBacteria; AAD07979; AAD07979; HP_0931. DR KEGG; heo:C694_04790; -. DR PATRIC; 20593163; VBIHelPyl33062_0967. DR OrthoDB; EOG6JQH1J; -. DR BioCyc; HPY:HP0931-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 146 AA; 16998 MW; C54979668E4F89B8 CRC64; MSKKHRLAFL GLIVGVLFFF SACEHRLHMG YYSEVTGDYL FNYNSTIVVA YDRSDAMTSY YINVIVYELQ KLGFYNVFTQ AEFPLDKAKN VIYARIVRNI SAVPFYQYNY QLIDQVNKPC YFLGGQFYCS QTLRIITLSM ALASKF // ID O24959_HELPY Unreviewed; 68 AA. AC O24959; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07229.1}; GN OrderedLocusNames=HP_0148 {ECO:0000313|EMBL:AAD07229.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07229.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07229.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07229.1; -; Genomic_DNA. DR PIR; D64538; D64538. DR RefSeq; NP_206947.1; NC_000915.1. DR RefSeq; WP_000670506.1; NC_018939.1. DR ProteinModelPortal; O24959; -. DR STRING; 85962.HP0148; -. DR PaxDb; O24959; -. DR EnsemblBacteria; AAD07229; AAD07229; HP_0148. DR GeneID; 900149; -. DR KEGG; heo:C694_00735; -. DR KEGG; hpy:HP0148; -. DR PATRIC; 20591515; VBIHelPyl33062_0157. DR OMA; HANYELV; -. DR OrthoDB; EOG67432H; -. DR BioCyc; HPY:HP0148-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR025065; DUF4006. DR Pfam; PF13179; DUF4006; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 68 AA; 7790 MW; 6329CF386CC83B5D CRC64; MKFLNGLAGN LLIVVILLCV AVFFTLKAIH IQKEQATNYY RYKDINALET KNTQNRANYE LVNQGSKK // ID O26026_HELPY Unreviewed; 203 AA. AC O26026; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08543.1}; GN OrderedLocusNames=HP_1493 {ECO:0000313|EMBL:AAD08543.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08543.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08543.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08543.1; -; Genomic_DNA. DR PIR; E64706; E64706. DR RefSeq; NP_208284.1; NC_000915.1. DR RefSeq; WP_001168588.1; NC_018939.1. DR ProteinModelPortal; O26026; -. DR DIP; DIP-3552N; -. DR IntAct; O26026; 21. DR MINT; MINT-163018; -. DR STRING; 85962.HP1493; -. DR PaxDb; O26026; -. DR EnsemblBacteria; AAD08543; AAD08543; HP_1493. DR GeneID; 899799; -. DR KEGG; heo:C694_07735; -. DR KEGG; hpy:HP1493; -. DR PATRIC; 20594397; VBIHelPyl33062_1567. DR eggNOG; ENOG4108UMD; Bacteria. DR eggNOG; ENOG4111JEA; LUCA. DR OMA; AFEDIMF; -. DR OrthoDB; EOG61GGD0; -. DR BioCyc; HPY:HP1493-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR019734; TPR_repeat. DR PROSITE; PS50005; TPR; 1. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 43 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 203 AA; 23947 MW; 2AB90C0C83CC4D9E CRC64; MQKFDYEFKK RALIKDGFLA FKQAHYAEAL RLFSEVLFLD KDNQKAKVGA LLSDIAKDFP KEAHSFYELY QSLIAMQKRS LKNQAEEQII NLIASFDEGL NQMAEKIDVQ ISQKSEELNG ILYADFKRLS LERGFKEAFE DLMFSSRVIF DNKEDFYEFL KELNHYGYYE LAINYIENMH EDSFIYDEFL RSLLEDALKS NKA // ID O25408_HELPY Unreviewed; 381 AA. AC O25408; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 118. DE SubName: Full=Response regulator {ECO:0000313|EMBL:AAD07754.1}; GN OrderedLocusNames=HP_0703 {ECO:0000313|EMBL:AAD07754.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07754.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07754.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 sigma-54 factor interaction domain. CC {ECO:0000256|RuleBase:RU000717}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07754.1; -; Genomic_DNA. DR PIR; G64607; G64607. DR RefSeq; NP_207497.1; NC_000915.1. DR RefSeq; WP_000684509.1; NC_018939.1. DR ProteinModelPortal; O25408; -. DR DIP; DIP-3569N; -. DR IntAct; O25408; 2. DR MINT; MINT-169712; -. DR STRING; 85962.HP0703; -. DR PaxDb; O25408; -. DR EnsemblBacteria; AAD07754; AAD07754; HP_0703. DR GeneID; 898933; -. DR KEGG; heo:C694_03625; -. DR KEGG; hpy:HP0703; -. DR PATRIC; 20592693; VBIHelPyl33062_0735. DR eggNOG; ENOG4105C1W; Bacteria. DR eggNOG; COG2204; LUCA. DR KO; K02481; -. DR OMA; IAEMPLQ; -. DR OrthoDB; EOG6WHNMG; -. DR BioCyc; HPY:HP0703-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR InterPro; IPR002078; Sigma_54_int. DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1. DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2. DR Pfam; PF00072; Response_reg; 1. DR Pfam; PF00158; Sigma54_activat; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1. DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1. DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU000717, KW ECO:0000256|SAAS:SAAS00473007}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW DNA-binding {ECO:0000256|SAAS:SAAS00421512}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000717, KW ECO:0000256|SAAS:SAAS00473007}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transcription {ECO:0000256|RuleBase:RU000717, KW ECO:0000256|SAAS:SAAS00421451}; KW Transcription regulation {ECO:0000256|RuleBase:RU000717, KW ECO:0000256|SAAS:SAAS00421451}. FT DOMAIN 2 113 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. FT DOMAIN 136 365 Sigma-54 factor interaction. FT {ECO:0000259|PROSITE:PS50045}. SQ SEQUENCE 381 AA; 43414 MW; 293D713778E538D8 CRC64; MKIAIVEDDI NMRKSLELFF ELQDDLEIVS FKNPKDALAK LDESFDLVIT DINMPHMDGL EFLRLLEGKY ESIVITGNAT LNKAIDSIRL GVKDFFQKPF KPELLLESIY RTKKVLEFQK KHPLEKPLKK PHKHSFLAAS KALEESKRQA LKVASTDANV MLLGESGVGK EVFAHFIHQH SQRSKHPFIA INMSAIPEHL LESELFGYQK GAFTDATAPK MGLFESANKG TIFLDEIAEM PLQLQSKLLR VVQEKEITRL GDNKSVKIDV RFISATNANM KEKIAAKEFR EDLFFRLQIV PITIAPLRER VEEILPIAEI KLKEVCDAYH LGPKSFSKNA AKCLLEYSWH GNVRELLGVV ERAAILSEET EIQEKDLFLE R // ID O24955_HELPY Unreviewed; 488 AA. AC O24955; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 107. DE SubName: Full=Cytochrome c oxidase, heme b and copper-binding subunit, membrane-bound (FixN) {ECO:0000313|EMBL:AAD07214.1}; GN OrderedLocusNames=HP_0144 {ECO:0000313|EMBL:AAD07214.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07214.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07214.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- COFACTOR: CC Name=Cu(2+); Xref=ChEBI:CHEBI:29036; CC Evidence={ECO:0000256|PIRSR:PIRSR604677-50}; CC Note=Binds 1 copper ion per subunit, denoted as copper B. CC {ECO:0000256|PIRSR:PIRSR604677-50}; CC -!- COFACTOR: CC Name=heme; Xref=ChEBI:CHEBI:30413; CC Evidence={ECO:0000256|PIRSR:PIRSR604677-50}; CC Note=Binds 2 heme groups per subunit, denoted as high- and low- CC spin. {ECO:0000256|PIRSR:PIRSR604677-50}; CC -!- SIMILARITY: Belongs to the heme-copper respiratory oxidase family. CC {ECO:0000256|RuleBase:RU000370}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07214.1; -; Genomic_DNA. DR PIR; H64537; H64537. DR RefSeq; NP_206943.1; NC_000915.1. DR RefSeq; WP_001157695.1; NC_018939.1. DR ProteinModelPortal; O24955; -. DR STRING; 85962.HP0144; -. DR PaxDb; O24955; -. DR EnsemblBacteria; AAD07214; AAD07214; HP_0144. DR GeneID; 900150; -. DR KEGG; heo:C694_00715; -. DR KEGG; hpy:HP0144; -. DR PATRIC; 20591507; VBIHelPyl33062_0153. DR eggNOG; ENOG4105EUH; Bacteria. DR eggNOG; COG3278; LUCA. DR KO; K00404; -. DR OMA; NLNYIAG; -. DR OrthoDB; EOG6G7QZX; -. DR BioCyc; HPY:HP0144-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0045278; C:plasma membrane respiratory chain complex IV; IEA:InterPro. DR GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0009060; P:aerobic respiration; IEA:InterPro. DR Gene3D; 1.20.210.10; -; 1. DR InterPro; IPR000883; COX1. DR InterPro; IPR023615; Cyt_c_Oxase_su1_BS. DR InterPro; IPR023616; Cyt_c_Oxase_su1_dom. DR InterPro; IPR004677; Cyt_c_oxidase_cbb3_su1. DR PANTHER; PTHR10422; PTHR10422; 1. DR Pfam; PF00115; COX1; 1. DR SUPFAM; SSF81442; SSF81442; 1. DR TIGRFAMs; TIGR00780; ccoN; 1. DR PROSITE; PS50855; COX1; 1. DR PROSITE; PS00077; COX1_CUB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Electron transport {ECO:0000256|RuleBase:RU000370}; KW Heme {ECO:0000256|PIRSR:PIRSR604677-50, KW ECO:0000256|RuleBase:RU000370}; KW Iron {ECO:0000256|PIRSR:PIRSR604677-50, KW ECO:0000256|RuleBase:RU000370}; Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR604677-50, KW ECO:0000256|RuleBase:RU000370}; KW Oxidoreductase {ECO:0000256|RuleBase:RU000370}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Respiratory chain {ECO:0000256|RuleBase:RU000370}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU000370}. FT TRANSMEM 16 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 64 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 131 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 182 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 215 238 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 266 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 286 306 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 318 341 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 353 375 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 396 415 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 453 472 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 13 488 COX1. {ECO:0000259|PROSITE:PS50855}. FT METAL 61 61 Iron (low-spin heme axial ligand); via FT tele nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. FT METAL 219 219 Copper B; via pros nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. FT METAL 269 269 Copper B; via tele nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. FT METAL 270 270 Copper B; via tele nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. FT METAL 357 357 Iron (high-spin heme axial ligand); via FT tele nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. FT METAL 359 359 Iron (low-spin heme axial ligand); via FT tele nitrogen. FT {ECO:0000256|PIRSR:PIRSR604677-50}. SQ SEQUENCE 488 AA; 56058 MW; 0503B3E9C3C517D0 CRC64; MQENVPLSYD YSISKLFLYA MVGFGIVGML IGIVLAFELS FPNLNYIAGE YGIFGRLRPL HTNAVIYGFT LGGIWASWYY IGQRVLKITY HQHPFLKIVG LLHFWLWIIL LILGVISLFA GLTQSKEYAE LMWPLDIIVV VAWVLWGVNM FGSMSVRREN TIYVSLWYYI ATYVGIAVMY IFNNLSVPTY FVADMGSVWH SISMYSGSND ALIQWWWGHN AVAFVFTSGV IGTIYYFLPK ESGQPIFSYK LTLFSFWSLM FVYIWAGGHH LIYSTVPDWV QTLSSVFSVV LILPSWGTAI NMLLTMRGQW HQLKESPLIK FLVLASTFYM LSTLEGSIQA IKSVNALAHF TDWIIGHVHD GVLGWVGFTL IASMYHMTPR LFKREIYSGR LVDFQFWIMT LGIVLYFSSM WIAGITQGMM WRDVDQYGNL TYQFIDTVKV LIPYYNIRGV GGLMYFIGFI IFAYNIFMTI TAGKKLEREP NYATPMSR // ID O25302_HELPY Unreviewed; 184 AA. AC O25302; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07645.1}; GN OrderedLocusNames=HP_0579 {ECO:0000313|EMBL:AAD07645.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07645.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07645.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07645.1; -; Genomic_DNA. DR PIR; C64592; C64592. DR RefSeq; NP_207374.1; NC_000915.1. DR RefSeq; WP_000909119.1; NC_018939.1. DR ProteinModelPortal; O25302; -. DR STRING; 85962.HP0579; -. DR PaxDb; O25302; -. DR EnsemblBacteria; AAD07645; AAD07645; HP_0579. DR GeneID; 900015; -. DR KEGG; heo:C694_02985; -. DR KEGG; hpy:HP0579; -. DR PATRIC; 20592431; VBIHelPyl33062_0604. DR OMA; LFVFFKT; -. DR OrthoDB; EOG6FNHRB; -. DR BioCyc; HPY:HP0579-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 21 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 75 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 115 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 146 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 179 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 184 AA; 20895 MW; 4888547ED96257BF CRC64; MLISSSYTLS FIWLFLIFFF FKNKPLGLRF SLSFISVILS NIALKDSLSL NEFLSSFTAP LSPFSCLLIL AYALFSCRLL QKPPLETLQS YSVMLFFNLL LLTDVLGFLP FSIYHHFMAS LIFSALFCSS LFLSSPLLGV IALVALSSSL LMRSNFQILD SLLDFPLLLF VFFKTLSLVK KRLY // ID O25590_HELPY Unreviewed; 389 AA. AC O25590; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 100. DE SubName: Full=Proline/betaine transporter (ProP) {ECO:0000313|EMBL:AAD07983.1}; GN OrderedLocusNames=HP_0936 {ECO:0000313|EMBL:AAD07983.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07983.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07983.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07983.1; -; Genomic_DNA. DR RefSeq; NP_207728.1; NC_000915.1. DR RefSeq; WP_001862934.1; NC_000915.1. DR ProteinModelPortal; O25590; -. DR STRING; 85962.HP0936; -. DR PaxDb; O25590; -. DR EnsemblBacteria; AAD07983; AAD07983; HP_0936. DR GeneID; 899465; -. DR KEGG; heo:C694_04820; -. DR KEGG; hpy:HP0936; -. DR PATRIC; 20593175; VBIHelPyl33062_0973. DR eggNOG; COG0477; LUCA. DR OMA; VCMAFSV; -. DR OrthoDB; EOG6DJXXN; -. DR BioCyc; HPY:HP0936-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 34 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 85 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 97 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 131 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 182 205 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 246 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 253 273 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 303 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 315 334 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 354 376 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 377 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 389 AA; 43271 MW; 4BB4569006043E39 CRC64; MAHFGDRFGR KNMFMLSILL MVIPTFALAL MPTFNHLVGF GVDNMGLSLK NAHYLGYIAP VFLVFVRICQ GVAVGGELPG AWVFVHEHAP QGQKNTYIGF LTASVVSGIL LGSLVYIGIY MVFDKPVVED WAWRVAFGLG GIFGIISVYL RRFLEETPVF QQMKQDNALV KFPLKEVFKN SLFGISISML ITWVLTACIL IFILFVPNFT LTHPNFNFTP FEKTYFQILG LVGIVSSIIL TGFLADKIKP HKVCMAFSVA FAFFGFLFFK EFYSNAPSLV NTIVLYFLAC FCAGIMNFCP IFMSDVFSAK IRFSGISFAY NIAYAITAGF TPQLSSWLNA KAIAAPESLQ SYGLSFYIFV VALIAFIVSL LMAPIYNKSN TQHEVSPTA // ID O25521_HELPY Unreviewed; 527 AA. AC O25521; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 87. DE SubName: Full=Type I restriction enzyme M protein (HsdM) {ECO:0000313|EMBL:AAD07898.1}; GN OrderedLocusNames=HP_0850 {ECO:0000313|EMBL:AAD07898.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07898.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07898.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O25519:HP_0848; NbExp=3; IntAct=EBI-7503998, EBI-9265942; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07898.1; -; Genomic_DNA. DR PIR; B64626; B64626. DR RefSeq; NP_207643.1; NC_000915.1. DR RefSeq; WP_010875553.1; NC_018939.1. DR ProteinModelPortal; O25521; -. DR DIP; DIP-3358N; -. DR IntAct; O25521; 8. DR MINT; MINT-161863; -. DR STRING; 85962.HP0850; -. DR REBASE; 3598; M.HpyAXIII. DR PaxDb; O25521; -. DR PRIDE; O25521; -. DR DNASU; 899379; -. DR EnsemblBacteria; AAD07898; AAD07898; HP_0850. DR GeneID; 899379; -. DR KEGG; hpy:HP0850; -. DR PATRIC; 20592989; VBIHelPyl33062_0882. DR eggNOG; ENOG4105CVR; Bacteria. DR eggNOG; COG0286; LUCA. DR KO; K03427; -. DR OMA; WASADIL; -. DR OrthoDB; EOG64JFNB; -. DR BioCyc; HPY:HP0850-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0009007; F:site-specific DNA-methyltransferase (adenine-specific) activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR022749; D12N6_MeTrfase_N. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR004546; Restrct_endonuc_typeI_HsdM. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF12161; HsdM_N; 1. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR TIGRFAMs; TIGR00497; hsdM; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 17 169 HsdM_N. {ECO:0000259|Pfam:PF12161}. FT DOMAIN 182 489 N6_Mtase. {ECO:0000259|Pfam:PF02384}. SQ SEQUENCE 527 AA; 59533 MW; B5881790D14F12E5 CRC64; MENNPNNNQA SLERNELHNT IWKVANELRG SVDGWDFKQY VLGILFYRYI SENMTHYINK EERKRDPSFD YAKLSDEKAE RGRKHLIEQK GFFIPPSALF CNALKNACHN EDLNVTLQNI FNEIEKSSLG TPSEENVKGL FADLDVNSNK LGSSHQNRVE KLTKILEAIG GMQLGDYLKS GIDVFGDAYE YLMAMYASNA GKSGGEFFTP QEVSELLAKI TLHGQESVNK VYDPCCGSGS LLLQFSKVLG DKNVSKGYFG QEINLTTYNL CRINMFLHDI NYSKFHIAHG DTLLDPKHED DEPFDAIVSN PPYSTKWVGD SNPILINDER FSPAGVLAPK NAADLAFTMH MLSYLSNSGT AAIVEFPGVL YRGNAEAKIR EYLVKENVID CVIALPDNLF FGTSIATCIL VLKKNKQDDT TLFIDASKEF VKEGKKNKLK ERNREKILQT YIERKEIKHF CALANIEKIK ENDYNLSVNR YVEQEDTKEA IDIKALNSEI AQIVEKQSAL RNRLESIIKE LEGGQNA // ID O26022_HELPY Unreviewed; 510 AA. AC O26022; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Lipase-like protein {ECO:0000313|EMBL:AAD08524.1}; GN OrderedLocusNames=HP_1489 {ECO:0000313|EMBL:AAD08524.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08524.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08524.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08524.1; -; Genomic_DNA. DR PIR; A64706; A64706. DR RefSeq; NP_208280.1; NC_000915.1. DR RefSeq; WP_000753982.1; NC_018939.1. DR ProteinModelPortal; O26022; -. DR DIP; DIP-3153N; -. DR IntAct; O26022; 23. DR MINT; MINT-160847; -. DR STRING; 85962.HP1489; -. DR PaxDb; O26022; -. DR EnsemblBacteria; AAD08524; AAD08524; HP_1489. DR GeneID; 899803; -. DR KEGG; heo:C694_07710; -. DR KEGG; hpy:HP1489; -. DR PATRIC; 20594389; VBIHelPyl33062_1563. DR eggNOG; ENOG4108PE5; Bacteria. DR eggNOG; COG1538; LUCA. DR OMA; IIYPLYM; -. DR OrthoDB; EOG6BCSNR; -. DR BioCyc; HPY:HP1489-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR InterPro; IPR003423; OMP_efflux. DR Pfam; PF02321; OEP; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 510 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157829. SQ SEQUENCE 510 AA; 57012 MW; FF149BDFA0CB7F6D CRC64; MKKTTLFVLG LLFNSFLNAV DGISKTDLSS LNLAEDSAPL NHPNAQKLSL KNAWTRVLSN HEGLHAQEYA IKRASKMKLA AKLSFLPQID LSAFYVYLSN PIKMDFASQK QPGVQKATNQ IHQGIQNIQQ NIPSQVLTPQ IQAGMQGVMQ GFGALSSTLE APLLFSKQNV VIGALSIIYP LYMGGARFTM VRIADLMQKD ANEVYRLKKL STFQELVSVY YGMVLNAEVA ETLEEVEKGH YKHFQNALKM QKVGQIARVE TLGAQVAYDK AHIASVKAKD VLEVSQLSFN SILSSKDDLV PSSKLEIRTE KNLPDLSFFV SSTLNSYPVL KTLENQIQIS KENTKLQIAK FLPQVSFFGS YIMKQNNSVF EDMIPSWFVG VAGRMPILSP TGRIQKYQAS KLAELQVSSE QIQAKKNMEL LVNKTYKETL SYLKEYKSLL SSVELAKENL KLQEQAFLQG LSTNAQVIDA RNTLSSIVVE QKSVAYKYIV SLANLMALSD HIDLFYEFVY // ID O25202_HELPY Unreviewed; 103 AA. AC O25202; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07533.1}; GN OrderedLocusNames=HP_0455 {ECO:0000313|EMBL:AAD07533.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07533.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07533.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07533.1; -; Genomic_DNA. DR PIR; G64576; G64576. DR ProteinModelPortal; O25202; -. DR STRING; 85962.HP0455; -. DR PaxDb; O25202; -. DR PRIDE; O25202; -. DR EnsemblBacteria; AAD07533; AAD07533; HP_0455. DR PATRIC; 20592171; VBIHelPyl33062_0474. DR OrthoDB; EOG6C2WCV; -. DR BioCyc; HPY:HP0455-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 103 AA; 12229 MW; 1501A33EE685F6DB CRC64; MFLQVVARTL RKNVNILEEQ GFIEVIKGKQ RYLYVYLKDY RELEGYNSVG ANQKNNIPSP FFLQIMRFLE KFAKEIERVK ITTKNVLCIF LAKSLCKELI MLF // ID O25933_HELPY Unreviewed; 130 AA. AC O25933; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08429.1}; GN OrderedLocusNames=HP_1382 {ECO:0000313|EMBL:AAD08429.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08429.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08429.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08429.1; -; Genomic_DNA. DR PIR; F64692; F64692. DR RefSeq; NP_208173.1; NC_000915.1. DR RefSeq; WP_000182078.1; NC_018939.1. DR ProteinModelPortal; O25933; -. DR DIP; DIP-3712N; -. DR IntAct; O25933; 17. DR MINT; MINT-159889; -. DR STRING; 85962.HP1382; -. DR PaxDb; O25933; -. DR PRIDE; O25933; -. DR EnsemblBacteria; AAD08429; AAD08429; HP_1382. DR GeneID; 900298; -. DR KEGG; hpy:HP1382; -. DR PATRIC; 20594153; VBIHelPyl33062_1447. DR eggNOG; COG1864; LUCA. DR KO; K01173; -. DR OMA; WYHYDIR; -. DR OrthoDB; EOG60CWJQ; -. DR BioCyc; HPY:HP1382-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.570.10; -; 1. DR InterPro; IPR001604; DNA/RNA_non-sp_Endonuclease. DR InterPro; IPR020821; Extracellular_endonuc_su_A. DR Pfam; PF01223; Endonuclease_NS; 1. DR SMART; SM00477; NUC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 115 NUC. {ECO:0000259|SMART:SM00477}. SQ SEQUENCE 130 AA; 15475 MW; 56B0A962521C8723 CRC64; MTNITPEAKN TNRHSVLLVE KEGRNLARKY HQVLVEELTI IKQGYKTFSS KNIAIPSGFW YHYDTSLTDS YENAKSECFY IPNDNQNYPL QEMRRDCKEY ERVEKQVVFK NNKNNELNEL PKYLNNAKKY // ID O25955_HELPY Unreviewed; 34 AA. AC O25955; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08450.1}; GN OrderedLocusNames=HP_1405 {ECO:0000313|EMBL:AAD08450.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08450.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08450.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08450.1; -; Genomic_DNA. DR PIR; E64695; E64695. DR ProteinModelPortal; O25955; -. DR IntAct; O25955; 5. DR STRING; 85962.HP1405; -. DR PaxDb; O25955; -. DR PRIDE; O25955; -. DR EnsemblBacteria; AAD08450; AAD08450; HP_1405. DR PATRIC; 20594199; VBIHelPyl33062_1470. DR BioCyc; HPY:HP1405-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 34 AA; 3732 MW; 14F683F0A1A7C482 CRC64; MPMNISVEPS KIVLFLDDLT KSIGNKDLEN LSGL // ID O25066_HELPY Unreviewed; 559 AA. AC O25066; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 95. DE SubName: Full=Para-aminobenzoate synthetase (PabB) {ECO:0000313|EMBL:AAD07357.1}; GN OrderedLocusNames=HP_0293 {ECO:0000313|EMBL:AAD07357.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07357.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07357.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07357.1; -; Genomic_DNA. DR PIR; E64556; E64556. DR RefSeq; NP_207091.1; NC_000915.1. DR RefSeq; WP_001863046.1; NC_018939.1. DR ProteinModelPortal; O25066; -. DR DIP; DIP-3666N; -. DR IntAct; O25066; 1. DR MINT; MINT-178644; -. DR STRING; 85962.HP0293; -. DR PaxDb; O25066; -. DR EnsemblBacteria; AAD07357; AAD07357; HP_0293. DR GeneID; 899198; -. DR KEGG; heo:C694_01480; -. DR KEGG; hpy:HP0293; -. DR PATRIC; 20591813; VBIHelPyl33062_0304. DR eggNOG; ENOG4105CRQ; Bacteria. DR eggNOG; COG0115; LUCA. DR eggNOG; COG0147; LUCA. DR KO; K03342; -. DR OMA; YQVNLTM; -. DR OrthoDB; EOG6D5G6B; -. DR BioCyc; HPY:HP0293-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.60.120.10; -; 1. DR InterPro; IPR005801; ADC_synthase. DR InterPro; IPR001544; Aminotrans_IV. DR InterPro; IPR019999; Anth_synth_I-like. DR InterPro; IPR015890; Chorismate_C. DR Pfam; PF01063; Aminotran_4; 1. DR Pfam; PF00425; Chorismate_bind; 1. DR PRINTS; PR00095; ANTSNTHASEI. DR SUPFAM; SSF56322; SSF56322; 1. DR SUPFAM; SSF56752; SSF56752; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 94 352 Chorismate_bind. FT {ECO:0000259|Pfam:PF00425}. SQ SEQUENCE 559 AA; 64765 MW; CC43C53FC41B39A9 CRC64; MIFGDFKYQK SVKKLTATNL NELKNALDFI SQNRGNGYFV GYLLYEARLA FLDENFQSQT PFLYFEQFLE RKKYSLEPLK EHAFYPKIHS SLDQKTYFKQ FKAVKERLKN GDTYQVNLTM DLFLDTKAKP KRVFKEVVHN QNTPFKAFIE NEFGSVLSFS PELFFELEFL DTAIKIITKP MKGTIARSKN PLIDEKNRLF LQNDDKNRSE NVMIVDLLRN DLSRLALKNS VKVNQLFEII SLPSVYQMIS EIEAKLPLKT SLFEIFKALF PCGSVTGCPK IKTMQIIESL EKRPRGVYCG AIGMVEEKKA LFSVPIRTLE KRVHENFLHL GVGSGVTYKS KAPKEYEESF LKSFFVMPKI EFEIVETMKI IKKDQKLEIN NKNAHKERLM NSTRYFNFKY DENLLDFELE KEGVLRVLLN KKGKLIKEYK TLEPLKSLEI RLSEAPIDKR NDFLYHKTTY APFYQKARAL IKKGVMFDEI FYNQDLELTE GARSNLVLEI HNRLLTPYFS AGALNGTGVV GLLKKGLVGH APLKLQDLQK ASKIYCINAL YGLVEVKIK // ID O25064_HELPY Unreviewed; 96 AA. AC O25064; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07361.1}; GN OrderedLocusNames=HP_0291 {ECO:0000313|EMBL:AAD07361.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07361.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07361.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07361.1; -; Genomic_DNA. DR PIR; C64556; C64556. DR RefSeq; NP_207089.1; NC_000915.1. DR RefSeq; WP_001171376.1; NC_018939.1. DR ProteinModelPortal; O25064; -. DR DIP; DIP-3330N; -. DR IntAct; O25064; 8. DR MINT; MINT-166288; -. DR STRING; 85962.HP0291; -. DR PaxDb; O25064; -. DR EnsemblBacteria; AAD07361; AAD07361; HP_0291. DR GeneID; 899080; -. DR KEGG; heo:C694_01470; -. DR KEGG; hpy:HP0291; -. DR PATRIC; 20591809; VBIHelPyl33062_0302. DR eggNOG; COG1605; LUCA. DR KO; K04093; -. DR OMA; QRGFKHL; -. DR OrthoDB; EOG6TTVS1; -. DR BioCyc; HPY:HP0291-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046417; P:chorismate metabolic process; IEA:InterPro. DR Gene3D; 1.20.59.10; -; 1. DR InterPro; IPR002701; Chorismate_mutase. DR InterPro; IPR020822; Chorismate_mutase_type_II. DR Pfam; PF01817; CM_2; 1. DR SMART; SM00830; CM_2; 1. DR SUPFAM; SSF48600; SSF48600; 1. DR PROSITE; PS51168; CHORISMATE_MUT_2; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 91 Chorismate mutase. FT {ECO:0000259|PROSITE:PS51168}. FT COILED 2 29 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 96 AA; 11331 MW; 1487E10B08128391 CRC64; MQKNLDSLLE NLRAEIDALD NELSDLLDKR LEIALKIALI KQESPIYCPK REQEILKRLS QRDFKHLNGE ILTGFYTEVF KISRKFQENA LKELKK // ID O25594_HELPY Unreviewed; 256 AA. AC O25594; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Amino acid ABC transporter, periplasmic binding protein (YckK) {ECO:0000313|EMBL:AAD07985.1}; GN OrderedLocusNames=HP_0940 {ECO:0000313|EMBL:AAD07985.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07985.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07985.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the bacterial solute-binding protein 3 CC family. {ECO:0000256|RuleBase:RU003744}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07985.1; -; Genomic_DNA. DR PIR; D64637; D64637. DR RefSeq; NP_207732.1; NC_000915.1. DR RefSeq; WP_000756473.1; NC_018939.1. DR ProteinModelPortal; O25594; -. DR IntAct; O25594; 1. DR STRING; 85962.HP0940; -. DR PaxDb; O25594; -. DR EnsemblBacteria; AAD07985; AAD07985; HP_0940. DR GeneID; 899469; -. DR KEGG; heo:C694_04840; -. DR KEGG; hpy:HP0940; -. DR PATRIC; 20593183; VBIHelPyl33062_0977. DR eggNOG; ENOG4105EAB; Bacteria. DR eggNOG; COG0834; LUCA. DR KO; K02424; -. DR OMA; YMKIAKK; -. DR OrthoDB; EOG6JQH58; -. DR BioCyc; HPY:HP0940-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR InterPro; IPR018313; SBP_3_CS. DR InterPro; IPR001638; Solute-binding_3/MltF_N. DR Pfam; PF00497; SBP_bac_3; 1. DR SMART; SM00062; PBPb; 1. DR PROSITE; PS01039; SBP_BACTERIAL_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 31 252 PBPb. {ECO:0000259|SMART:SM00062}. SQ SEQUENCE 256 AA; 28737 MW; C7AEE1E044D4FBB1 CRC64; MKKVLFLLVI SFFGGFLNAS SLYEKLINKE TISVGTEGIY PPFTYHNKEG KLTGYDVEVA RELAKELGVK IKFHETSWDI MLTGLKSGRF DMVANQVSLA TKKRQAAFDK SLPYSYSGTI MLVRKDENRI KDIKDIKGLR AANTLSSTYG EIAFKYDAQI VSVDSMAQAL LLVAQKRADL TLNSSLAILN YLNTHKDNPF KIAWESKEKD GGASFVINKH QEKALELINQ AMQRLINKGV LKRLGEQFFG KDVSQP // ID O24922_HELPY Unreviewed; 314 AA. AC O24922; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AAD07165.1}; GN OrderedLocusNames=HP_0096 {ECO:0000313|EMBL:AAD07165.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07165.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07165.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the D-isomer specific 2-hydroxyacid CC dehydrogenase family. {ECO:0000256|RuleBase:RU003719}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07165.1; -; Genomic_DNA. DR PIR; H64531; H64531. DR RefSeq; NP_206896.1; NC_000915.1. DR RefSeq; WP_000846779.1; NC_018939.1. DR ProteinModelPortal; O24922; -. DR DIP; DIP-3384N; -. DR IntAct; O24922; 3. DR MINT; MINT-183199; -. DR STRING; 85962.HP0096; -. DR PaxDb; O24922; -. DR EnsemblBacteria; AAD07165; AAD07165; HP_0096. DR GeneID; 899117; -. DR KEGG; heo:C694_00470; -. DR KEGG; hpy:HP0096; -. DR PATRIC; 20591403; VBIHelPyl33062_0101. DR eggNOG; ENOG4105C5I; Bacteria. DR eggNOG; COG1052; LUCA. DR OMA; RHKVKRQ; -. DR OrthoDB; EOG6VXFC3; -. DR BioCyc; HPY:HP0096-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR006139; D-isomer_2_OHA_DH_cat_dom. DR InterPro; IPR029753; D-isomer_DH_CS. DR InterPro; IPR006140; D-isomer_DH_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00389; 2-Hacid_dh; 1. DR Pfam; PF02826; 2-Hacid_dh_C; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00671; D_2_HYDROXYACID_DH_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 16 313 2-Hacid_dh. {ECO:0000259|Pfam:PF00389}. FT DOMAIN 110 288 2-Hacid_dh_C. {ECO:0000259|Pfam:PF02826}. SQ SEQUENCE 314 AA; 34796 MW; 747A655BD46BBE88 CRC64; MKTFKKGVIL DAKSVGLKAL EVLKEVADFD FYEVTPPSQI VERSIEAEIM VLNKVVITQE VLSQLPKLKL ICITATGTDN VDIKSAKALG IEVKNVSAYS TESVAQHTLA CALSLLGRIN DYDRYCKSGE YSQSDLFTHI SDIKMGLIKG SQWGVIGLGT IGKRVAKLAQ AFGAKVVYYS PKDKKEEYER LSLKDLLATS DIISIHAPLN ESTRDLIALK ELQSLKDGAI LINVGRGGIV NEKDLAEILE TKDLYYASDV FVKEPFEKDH AFLNPKIQNK LLLTPHIAWA YSDSLKTLVE KTKENIQDFL ASQK // ID O25674_HELPY Unreviewed; 287 AA. AC O25674; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=FliY protein (FliY) {ECO:0000313|EMBL:AAD08074.1}; GN OrderedLocusNames=HP_1030 {ECO:0000313|EMBL:AAD08074.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08074.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08074.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08074.1; -; Genomic_DNA. DR PIR; F64648; F64648. DR RefSeq; NP_207820.1; NC_000915.1. DR RefSeq; WP_001150629.1; NC_018939.1. DR ProteinModelPortal; O25674; -. DR IntAct; O25674; 7. DR MINT; MINT-4065399; -. DR STRING; 85962.HP1030; -. DR PaxDb; O25674; -. DR EnsemblBacteria; AAD08074; AAD08074; HP_1030. DR GeneID; 899565; -. DR KEGG; heo:C694_05330; -. DR KEGG; hpy:HP1030; -. DR PATRIC; 20593397; VBIHelPyl33062_1079. DR eggNOG; ENOG4105DD5; Bacteria. DR eggNOG; COG1776; LUCA. DR eggNOG; COG1886; LUCA. DR KO; K02417; -. DR OMA; EMASNIF; -. DR OrthoDB; EOG6Q5NX5; -. DR BioCyc; HPY:HP1030-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009425; C:bacterial-type flagellum basal body; IEA:InterPro. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0003774; F:motor activity; IEA:InterPro. DR GO; GO:0071973; P:bacterial-type flagellum-dependent cell motility; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR Gene3D; 3.40.1550.10; -; 1. DR InterPro; IPR028976; CheC-like_dom. DR InterPro; IPR012826; FliN. DR InterPro; IPR001172; FliN_T3SS_HrcQb. DR InterPro; IPR001543; SpoA. DR Pfam; PF01052; FliMN_C; 1. DR PRINTS; PR00956; FLGMOTORFLIN. DR SUPFAM; SSF101801; SSF101801; 1. DR SUPFAM; SSF103039; SSF103039; 1. DR TIGRFAMs; TIGR02480; fliN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 207 275 FliMN_C. {ECO:0000259|Pfam:PF01052}. SQ SEQUENCE 287 AA; 31717 MW; 5EF758B40FC5802B CRC64; MQDFIKIFIQ EVVSTLEGLV GKAPSVGLEK EISSSDESFL KLISTPYARV VISAIEKEES SIELLAPVVL VTSLSDLMLG GEGASKEEMD NDDLDAFKEM ASNIFGAIAT SLKSQELLPK LNFTTINAEI AKELPKKEDY AKAMVFSFKM EAIKESQIIL LTTAAFEGQF EKTHKEEKEE TTEGVAEEVK THDASLENIE IRNISMLLDV KLNVKVRIGQ KKMILKDVVS MDIGSVVELD QLVNDPLEIL VDDKVIAKGE VVIVDGNFGI QITDIGTKKE RLEQLKH // ID O25239_HELPY Unreviewed; 442 AA. AC O25239; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 96. DE RecName: Full=Transporter {ECO:0000256|RuleBase:RU003732}; GN OrderedLocusNames=HP_0497 {ECO:0000313|EMBL:AAD07562.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07562.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07562.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the sodium:neurotransmitter symporter (SNF) CC (TC 2.A.22) family. {ECO:0000256|RuleBase:RU003732}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07562.1; -; Genomic_DNA. DR PIR; A64582; A64582. DR RefSeq; NP_207294.1; NC_000915.1. DR RefSeq; WP_000526632.1; NC_018939.1. DR ProteinModelPortal; O25239; -. DR STRING; 85962.HP0497; -. DR PaxDb; O25239; -. DR EnsemblBacteria; AAD07562; AAD07562; HP_0497. DR GeneID; 899258; -. DR KEGG; heo:C694_02555; -. DR KEGG; hpy:HP0497; -. DR PATRIC; 20592269; VBIHelPyl33062_0523. DR eggNOG; ENOG4105C8J; Bacteria. DR eggNOG; COG0733; LUCA. DR KO; K03308; -. DR OMA; INPKKRW; -. DR OrthoDB; EOG6PGK51; -. DR BioCyc; HPY:HP0497-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005328; F:neurotransmitter:sodium symporter activity; IEA:InterPro. DR InterPro; IPR000175; Na/ntran_symport. DR PANTHER; PTHR11616; PTHR11616; 1. DR Pfam; PF00209; SNF; 2. DR PRINTS; PR00176; NANEUSMPORT. DR PROSITE; PS00610; NA_NEUROTRAN_SYMP_1; 1. DR PROSITE; PS50267; NA_NEUROTRAN_SYMP_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Symport {ECO:0000256|RuleBase:RU003732}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003732}. FT TRANSMEM 36 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 89 113 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 133 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 186 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 235 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 289 320 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 340 358 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 378 400 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 421 439 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 442 AA; 49317 MW; 470C495E86DAD072 CRC64; MGNHFSKLGF VLAALGSAIG LGHIWRFPYM TGVSGGGAFV LLFLFLSLSV GAAMFIAEML LGQSTQKNVT EAFKELDINP KKRWKYAGLL LVSGPLILTF YGTILGWVLY YLVSVSFNLP NNIQESEQIF TQTLQSIGLQ SIGLFSVLLI TGWIVSRGIK EGIEKLNLVL MPLLFATFFG LLFYAMSMDS FSKAFHFMFD FKPKDLTSQV FTYSLGQVFF SLSIGLGINI TYAAVTDKTQ NLLKSTIWVV LSGILISLVA GLMIFTFVFE YGANVSQGTG LIFTSLPVVF GQMGAIGILV SILFLLALAF AGITSTVALL EPSVMYLTER YQYSRFKVTW GLVALIFVVG VVLIFSLHKD YKDYLTFFEK SLFDWLDFAS STIIMPLGGM ATFIFMGWVL KKEKLRLLSV HFLGPKLFAT WYFLLKYITP LIVFSIWLSK IY // ID O25112_HELPY Unreviewed; 111 AA. AC O25112; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 66. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07416.1}; GN OrderedLocusNames=HP_0345 {ECO:0000313|EMBL:AAD07416.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07416.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07416.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07416.1; -; Genomic_DNA. DR PIR; A64563; A64563. DR RefSeq; WP_001862999.1; NC_018939.1. DR ProteinModelPortal; O25112; -. DR STRING; 85962.HP0345; -. DR PaxDb; O25112; -. DR EnsemblBacteria; AAD07416; AAD07416; HP_0345. DR KEGG; heo:C694_01750; -. DR BioCyc; HPY:HP0345-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 84 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 111 AA; 12938 MW; 91C89F584E3A2F71 CRC64; MENDVKEDLE QARPKLEPEK QKQEPEEQKQ EKQDKQEQKP KQEKEESKSK EQEENKKQKR SSYIFWGCII GLCIVVIIAK IIAFGGSSEE AKADKPKNSL SMLKNFYLPI L // ID O25727_HELPY Unreviewed; 31 AA. AC O25727; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08148.1}; GN OrderedLocusNames=HP_1097 {ECO:0000313|EMBL:AAD08148.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08148.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08148.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08148.1; -; Genomic_DNA. DR PIR; A64657; A64657. DR RefSeq; NP_207888.1; NC_000915.1. DR RefSeq; WP_001185550.1; NC_018939.1. DR ProteinModelPortal; O25727; -. DR STRING; 85962.HP1097; -. DR PaxDb; O25727; -. DR EnsemblBacteria; AAD08148; AAD08148; HP_1097. DR GeneID; 899633; -. DR KEGG; heo:C694_05660; -. DR KEGG; hpy:HP1097; -. DR BioCyc; HPY:HP1097-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 31 AA; 3432 MW; 9E6B101CDB8AEC8E CRC64; MALKSALLGV RRILGEVLGE NNFKILPIPL R // ID O25087_HELPY Unreviewed; 251 AA. AC O25087; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07387.1}; GN OrderedLocusNames=HP_0318 {ECO:0000313|EMBL:AAD07387.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07387.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07387.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07387.1; -; Genomic_DNA. DR PIR; F64559; F64559. DR RefSeq; NP_207116.1; NC_000915.1. DR RefSeq; WP_000934548.1; NC_018939.1. DR ProteinModelPortal; O25087; -. DR STRING; 85962.HP0318; -. DR PaxDb; O25087; -. DR EnsemblBacteria; AAD07387; AAD07387; HP_0318. DR GeneID; 899205; -. DR KEGG; heo:C694_01610; -. DR KEGG; hpy:HP0318; -. DR PATRIC; 20591867; VBIHelPyl33062_0331. DR eggNOG; ENOG4108WHG; Bacteria. DR eggNOG; COG0748; LUCA. DR KO; K07226; -. DR OMA; NNPHNVE; -. DR OrthoDB; EOG6CVVBS; -. DR BioCyc; HPY:HP0318-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR Gene3D; 3.20.180.10; -; 1. DR InterPro; IPR019595; DUF2470. DR InterPro; IPR026324; Haem_oxygenase_HugZ. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF10615; DUF2470; 1. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 2. DR TIGRFAMs; TIGR04109; heme_ox_HugZ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 74 DUF2470. {ECO:0000259|Pfam:PF10615}. FT DOMAIN 88 179 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 251 AA; 28507 MW; 54E62CE29F672B26 CRC64; MLNRIIEHMN AHHVEDMKGL LKKFGQVHHA ENVAFKSVDP QGIVIGYNHN QTLRIEFNHE VKDPKDYKNA IIELCQSVEK THDLKGVEEE VKAFKESFDS VCLATLHPNG HVVCSYAPLM SDGKQYYIYV SEVAEHFAGL KNNPHNVEVM FLEDESKAKS AILRKRLRYK TNARFIERGA EFDKAFDSFI EKTGGAGGIK TIRAMQDFHL IALDFKEGRF VKGFGQAYDI LGDKIAYVGD KGNPHNFAHK K // ID O25968_HELPY Unreviewed; 75 AA. AC O25968; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08474.1}; GN OrderedLocusNames=HP_1425 {ECO:0000313|EMBL:AAD08474.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08474.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08474.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08474.1; -; Genomic_DNA. DR PIR; A64698; A64698. DR ProteinModelPortal; O25968; -. DR PaxDb; O25968; -. DR PRIDE; O25968; -. DR EnsemblBacteria; AAD08474; AAD08474; HP_1425. DR PATRIC; 20594249; VBIHelPyl33062_1494. DR OMA; ITWSADY; -. DR BioCyc; HPY:HP1425-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 75 AA; 8409 MW; 9AE91C7D3B8D2773 CRC64; MLAQLVQFQG YGSLGLRMGD KHHTLELSTS VHGDAPSCSL KKLKSCESAR VLQAKIPRGI FESYVTWSAD YVYRF // ID O25322_HELPY Unreviewed; 593 AA. AC O25322; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Multidrug resistance protein (SpaB) {ECO:0000313|EMBL:AAD07663.1}; GN OrderedLocusNames=HP_0600 {ECO:0000313|EMBL:AAD07663.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07663.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07663.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07663.1; -; Genomic_DNA. DR PIR; H64594; H64594. DR RefSeq; NP_207395.1; NC_000915.1. DR RefSeq; WP_010875501.1; NC_018939.1. DR ProteinModelPortal; O25322; -. DR STRING; 85962.HP0600; -. DR PaxDb; O25322; -. DR PRIDE; O25322; -. DR EnsemblBacteria; AAD07663; AAD07663; HP_0600. DR GeneID; 898971; -. DR KEGG; hpy:HP0600; -. DR PATRIC; 20592479; VBIHelPyl33062_0628. DR eggNOG; ENOG4105EGG; Bacteria. DR eggNOG; ENOG410XPIZ; LUCA. DR OMA; FENKELY; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP0600-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011527; ABC1_TM_dom. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90123; SSF90123; 1. DR PROSITE; PS50929; ABC_TM1F; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 49 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 150 170 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 176 193 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 262 284 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 28 313 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50929}. FT DOMAIN 351 590 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 593 AA; 68563 MW; 3AFD3C6959A77C9D CRC64; MQTPMDTIKS IPLRTFILLY KSSPKCVVLA SITVLFIGII PSINILVMIR LIDIVVNLLQ NHTHFEYSLL LPTLLLWGAL LFLTHVFSGI SSSLQTIIAE QFSINIITQL ANKLTKVKNL NFFENKDHTI KLNAIHNGLY IRPLNYVSNL FFNLQRIIGL VSLFGILFSI SIYLPFIMIF ATVPCIFISN HIAKKHSASI DKLQDKKESI QNYLYSGLDN QKNKDNLLFN FMLNFHHKFI ENKELYINHF VKIAQKNLTL TIYADILTTI LSIALFFLMV FIILSKLIGV GAIAGYIQAF SYTEQQLQYL SFYGKWFFAI NKYFENYFCI LDYKMPKPET QIRLEEKIHS ITFENISFSY PNSKLIFENF NLSLHSNKIY ALVGKNASGK TTLIKLLLGF YTPNSGQIII NNKYPLQDLE LNSYHQQMSA IFQDFSLYAG YSIDDNLFMQ NNPTREKLKQ KREILKSFDE NFQNCLNDYS NALFGTQYNG VDFSLGQKQR IATIRAFLKP SHCIVLDEPS STIDPIIEKE FLDFIFKKSQ SKMALIITHR MNSVKQADEI IVLDQGKLIE QGNFETLMKK QGLFYELFLK QQY // ID O25397_HELPY Unreviewed; 166 AA. AC O25397; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07750.1}; GN OrderedLocusNames=HP_0688 {ECO:0000313|EMBL:AAD07750.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07750.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07750.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07750.1; -; Genomic_DNA. DR PIR; H64605; H64605. DR ProteinModelPortal; O25397; -. DR STRING; 85962.HP0688; -. DR PaxDb; O25397; -. DR PRIDE; O25397; -. DR EnsemblBacteria; AAD07750; AAD07750; HP_0688. DR PATRIC; 20592661; VBIHelPyl33062_0719. DR eggNOG; COG3298; LUCA. DR OrthoDB; EOG6ZWJDD; -. DR BioCyc; HPY:HP0688-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.30.420.10; -; 1. DR InterPro; IPR019288; 3'-5'_exonuclease_PolB-like. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF10108; DNA_pol_B_exo2; 1. DR SUPFAM; SSF53098; SSF53098; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 44 163 DNA_pol_B_exo2. FT {ECO:0000259|Pfam:PF10108}. SQ SEQUENCE 166 AA; 19602 MW; C2926FB5AB5962BF CRC64; MLCVFDIETI PNISLCKEHF QLEENDALKI CEWSFEKQKE KSGSEFLPLY LHEIISIAAV IGDDYGQFIK VGNFGQKHEN KEDFTSEKEL LEDFFKYFNE KQPRLISFNG RGFDMPLLTL KALKYNLTLD AFYNQENKWE NYRARYSEQF HLDLMDSLSH YGSVRG // ID O25461_HELPY Unreviewed; 274 AA. AC O25461; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07815.1}; GN OrderedLocusNames=HP_0766 {ECO:0000313|EMBL:AAD07815.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07815.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07815.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07815.1; -; Genomic_DNA. DR PIR; F64615; F64615. DR RefSeq; NP_207559.1; NC_000915.1. DR RefSeq; WP_000892392.1; NC_018939.1. DR ProteinModelPortal; O25461; -. DR STRING; 85962.HP0766; -. DR PaxDb; O25461; -. DR EnsemblBacteria; AAD07815; AAD07815; HP_0766. DR GeneID; 898940; -. DR KEGG; heo:C694_03935; -. DR KEGG; hpy:HP0766; -. DR PATRIC; 20592823; VBIHelPyl33062_0800. DR OMA; DLEVAMH; -. DR OrthoDB; EOG618QWZ; -. DR BioCyc; HPY:HP0766-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 274 AA; 30935 MW; 0C8960FFF86DC083 CRC64; MLENMQDISL QSSHEVGVDI TESKMLTKFA SSLLMNLYEY IGNGKDPKEA SDHAMRDAKD VVLSCGRVAF LKDIVSNSPN ETIQSFDGDL EVAMHLEKIG IECYKIFIDY GSQKIDDNEL SCRLLHTGTK ILGTKAMAVV GQTFIPIPGV GAIIGNFVGA LLSKTLCENL RDVLKEAKLA RQRRIEIEKE CRESIRLLEI YRNQFKEVFE RYFHGNVKFF NENFNNLERA LYAGDADLAI GVNNEIQERL GQKPLFNNTQ EFLELMNNGG KIEI // ID O25746_HELPY Unreviewed; 312 AA. AC O25746; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 99. DE RecName: Full=Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; DE EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417}; GN OrderedLocusNames=HP_1121 {ECO:0000313|EMBL:AAD08164.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08164.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08164.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + DNA = S-adenosyl-L- CC homocysteine + DNA containing 5-methylcytosine. CC {ECO:0000256|RuleBase:RU000417}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. C5-methyltransferase family. CC {ECO:0000256|RuleBase:RU000416}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08164.1; -; Genomic_DNA. DR PIR; A64660; A64660. DR RefSeq; NP_207912.1; NC_000915.1. DR RefSeq; WP_001863088.1; NC_018939.1. DR ProteinModelPortal; O25746; -. DR STRING; 85962.HP1121; -. DR REBASE; 56835; M.Hpy26695ORF5785P. DR PaxDb; O25746; -. DR EnsemblBacteria; AAD08164; AAD08164; HP_1121. DR GeneID; 899658; -. DR KEGG; heo:C694_05785; -. DR KEGG; hpy:HP1121; -. DR PATRIC; 20593585; VBIHelPyl33062_1172. DR eggNOG; ENOG4105DVF; Bacteria. DR eggNOG; COG0270; LUCA. DR KO; K00558; -. DR OMA; AMSVNVI; -. DR OrthoDB; EOG67MF0G; -. DR BioCyc; HPY:HP1121-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003886; F:DNA (cytosine-5-)-methyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR018117; C5_DNA_meth_AS. DR InterPro; IPR001525; C5_MeTfrase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF00145; DNA_methylase; 1. DR PRINTS; PR00105; C5METTRFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00675; dcm; 1. DR PROSITE; PS00094; C5_MTASE_1; 1. DR PROSITE; PS51679; SAM_MT_C5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000256|RuleBase:RU000417, KW ECO:0000313|EMBL:AAD08164.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Restriction system {ECO:0000256|RuleBase:RU004244}; KW Transferase {ECO:0000256|RuleBase:RU000417, KW ECO:0000313|EMBL:AAD08164.1}. FT DOMAIN 1 309 SAM-dependent_MTases. FT {ECO:0000259|Pfam:PF00145}. SQ SEQUENCE 312 AA; 35656 MW; 3ED5D24DE6D1B06A CRC64; MDFCSGIGGG RLGLEQCHLK CVGHAEINHE ALRTYELFFK DTHNFGDLMR INPNDLPDFD ALISGFPCQA FSINGKRKGL EDERGTIIYG LIRILKVKQP ECFLLENVKG LINHNKKATF NIIIKALQEV GYTTYYKILN SADFQLAQNR ERLYIVGFRK DLKHPFNFPL GLANDYYFKD FLDADNECYL DVSNAAFQRY LHNRYNHNRV SLEDLLTLEN AVLDTRQSDL RLYSNVFPTL RTSRHGLFYT QKGKIKRLNA IESLLLQGFP RDLIAKIKDN PNFKASHLLS QAGNAMSVNV IAAIAKQMLK AI // ID O24974_HELPY Unreviewed; 157 AA. AC O24974; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 63. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07240.1}; GN OrderedLocusNames=HP_0167 {ECO:0000313|EMBL:AAD07240.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07240.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07240.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07240.1; -; Genomic_DNA. DR PIR; G64540; G64540. DR RefSeq; NP_206966.1; NC_000915.1. DR RefSeq; WP_000918975.1; NC_000915.1. DR ProteinModelPortal; O24974; -. DR DIP; DIP-3258N; -. DR IntAct; O24974; 2. DR MINT; MINT-179928; -. DR STRING; 85962.HP0167; -. DR PaxDb; O24974; -. DR PRIDE; O24974; -. DR EnsemblBacteria; AAD07240; AAD07240; HP_0167. DR GeneID; 899147; -. DR KEGG; hpy:HP0167; -. DR PATRIC; 20591555; VBIHelPyl33062_0177. DR OMA; RFLQYQL; -. DR OrthoDB; EOG69PQ5P; -. DR BioCyc; HPY:HP0167-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 134 157 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 157 AA; 18095 MW; 907843E2CCAEEA63 CRC64; MAGRMELKNI ISETLNEIEK MAKTIDNNFD AAQKTPSFFK TPPYLQNTLD PQNANVPLEP KNAAKIETQE KITEEKEEAP EIITEEIAQE NPTQVLISNE RVFLKGLLER TLVLFKGMQA LEEKEAMKRL DLVARFLQYQ LSTLEKRLES LERENTE // ID O25978_HELPY Unreviewed; 239 AA. AC O25978; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08485.1}; GN OrderedLocusNames=HP_1437 {ECO:0000313|EMBL:AAD08485.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08485.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08485.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08485.1; -; Genomic_DNA. DR PIR; E64699; E64699. DR RefSeq; NP_208228.1; NC_000915.1. DR RefSeq; WP_001293489.1; NC_000915.1. DR ProteinModelPortal; O25978; -. DR STRING; 85962.HP1437; -. DR PaxDb; O25978; -. DR PRIDE; O25978; -. DR EnsemblBacteria; AAD08485; AAD08485; HP_1437. DR GeneID; 899858; -. DR KEGG; hpy:HP1437; -. DR PATRIC; 20594277; VBIHelPyl33062_1508. DR OMA; YLESETN; -. DR OrthoDB; EOG6MSS2Z; -. DR BioCyc; HPY:HP1437-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR InterPro; IPR000157; TIR_dom. DR SUPFAM; SSF52200; SSF52200; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 239 AA; 27735 MW; 3BEE00DB4C7EB1A7 CRC64; MSENIKGKYI MKAFKVDLDS SENQSILKPS ARSSNNQAHQ VDETAKKIDK LIKNAPYSND DIVLNHNKIK EAFFSPFKPQ LKNAQVFLSH SHADRNKALE VKDYLESQTK RKVFIDSLFW DYKDDVLNKL ARYDDISKIE DAFTLILRES LQDMIEKCPY FVFLQSSNSV SFNQNLLKIT YSAWIYEELK IAHSISKGYL TLSFEQEQGL EIKIENDISL FLKSFKTITL NELSQQINL // ID O25403_HELPY Unreviewed; 765 AA. AC O25403; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=N-methylhydantoinase {ECO:0000313|EMBL:AAD07747.1}; GN OrderedLocusNames=HP_0696 {ECO:0000313|EMBL:AAD07747.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07747.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07747.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07747.1; -; Genomic_DNA. DR PIR; H64606; H64606. DR RefSeq; NP_207490.1; NC_000915.1. DR RefSeq; WP_001285084.1; NC_018939.1. DR ProteinModelPortal; O25403; -. DR DIP; DIP-3412N; -. DR IntAct; O25403; 3. DR MINT; MINT-170228; -. DR STRING; 85962.HP0696; -. DR PaxDb; O25403; -. DR EnsemblBacteria; AAD07747; AAD07747; HP_0696. DR GeneID; 899314; -. DR KEGG; heo:C694_03595; -. DR KEGG; hpy:HP0696; -. DR PATRIC; 20592681; VBIHelPyl33062_0729. DR eggNOG; ENOG4105C5J; Bacteria. DR eggNOG; COG0146; LUCA. DR OMA; SGCRNIR; -. DR OrthoDB; EOG651SQW; -. DR BioCyc; HPY:HP0696-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR InterPro; IPR003692; Hydantoinase_B. DR Pfam; PF02538; Hydantoinase_B; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 765 AA; 86512 MW; 171EB3B80335A876 CRC64; MANLLKNGKT LKQARDEILA RTEKTGHYNG LKKLEFKERD PIGYEKMFSK LRGGIVHARE TAKRIAASPI VEQEGELCFT LYNAVGDSVL TSTGIIIHVG TMGSAIKYMV ENNWEDNPGI NDKDIFTNND CAIGNVHPCD IMTLVPIFHD EKLIGWVGGV THVIDTGSVT PGSMSTGQVQ RFGDGYMITC RKTGANDESF KDWLHESQRS VRTPKYWILD ERTRIAGCHM IRDLVMEVIK EDGIDSYMRF IDEVIEEGRR GLISRIKSMT IPGKYRKVAF VDVPYAHKDI GVCSEFAKLD TIMHSPVEIT INKDATWKLD FDGASRWGWH SFNCNQVSFT SGIWVMMTQT LIPTSRINDG AYFATQFRLK KGTWMNPDDR RTGHAYAWHF LVSGWSALWR GLSQAYYSRG YLEEVNSGNA NTSNWLQGGG INQDGEIHAV NSFETSSCGT GACAIKDGLN HAAAIWNPEG DMGDVEIWEM AEPLLYLGRN VKANTGGYGK YRGGNGFETL RMVWGAHDWT MFFMGNGYMN SDWGMMGGYP AASGYRFEAH NTDLKNRIKN NASLPLGGDF NPTDRDYEKH ISHASQVKRD KQCITTENCF DNYDLYLNYI KGGPGFGDPI ERDLNAILED LNSKQLLPEY AYKVYGAVVS QNKDGVWVGD EAKTKARRKE ILENRKARSI PVKQWMEQER NAILEKEASK QVKHMYATSF DLSPKFLNDF KTFWNLPKNW SVKEDELGVF TYGSKYRMDL SKLPDVRTVL LVDEK // ID O25833_HELPY Unreviewed; 415 AA. AC O25833; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08278.1}; GN OrderedLocusNames=HP_1235 {ECO:0000313|EMBL:AAD08278.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08278.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08278.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08278.1; -; Genomic_DNA. DR PIR; C64674; C64674. DR RefSeq; NP_208027.1; NC_000915.1. DR RefSeq; WP_001177367.1; NC_018939.1. DR ProteinModelPortal; O25833; -. DR STRING; 85962.HP1235; -. DR PaxDb; O25833; -. DR EnsemblBacteria; AAD08278; AAD08278; HP_1235. DR GeneID; 899797; -. DR KEGG; heo:C694_06375; -. DR KEGG; hpy:HP1235; -. DR PATRIC; 20593841; VBIHelPyl33062_1291. DR eggNOG; ENOG4108R4X; Bacteria. DR eggNOG; ENOG4111FG1; LUCA. DR OMA; FIDTCLE; -. DR OrthoDB; EOG6Q2SGV; -. DR BioCyc; HPY:HP1235-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 31 55 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 104 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 148 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 211 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 217 241 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 253 273 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 299 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 311 330 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 415 AA; 47418 MW; 2AC111B9575C3F88 CRC64; MQLSPLQSAL LYFSYFIYPE KKTRSFDLSD LVFIIMVFLV LALGLLMSGE ISISYNEAKD FFYSSAWFVQ IAQKSTEILG QNDLALRLPF LIAHLINMFL FYLIGRKILK KPKDALYVVL TYALLPGVNL FAILLAKSVL VLSLGLLISY LYIKTQKIPY LTLSACTFLD GAFIPLLLGV FAYALRKRYF KSAIFILVGL GVNTALFSGS FNKGLPSGYF IDTCLELMLL YSPLFFLYYP YTLYKALLDK KPSLLAFMSA SGWLFPLLLS MRQEIDLKTF APLALIGLPL FIKSVLNSLR VRLKEFRGQY YLRVFSLYLL MLTETLFLWG SKISGANEKL LNRHFLAKEV ATALQLRGIH QIRTNDKQLA LRLQFYGIKE GGRLRLINTK ISKKRPDITI IYADKILQSY SLVRH // ID O25900_HELPY Unreviewed; 242 AA. AC O25900; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD08384.1}; GN OrderedLocusNames=HP_1343 {ECO:0000313|EMBL:AAD08384.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08384.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08384.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08384.1; -; Genomic_DNA. DR PIR; G64687; G64687. DR RefSeq; NP_208135.1; NC_000915.1. DR RefSeq; WP_000395259.1; NC_018939.1. DR ProteinModelPortal; O25900; -. DR IntAct; O25900; 1. DR STRING; 85962.HP1343; -. DR PaxDb; O25900; -. DR EnsemblBacteria; AAD08384; AAD08384; HP_1343. DR GeneID; 898778; -. DR KEGG; heo:C694_06930; -. DR KEGG; hpy:HP1343; -. DR PATRIC; 20594071; VBIHelPyl33062_1406. DR eggNOG; ENOG4105EE5; Bacteria. DR eggNOG; COG0861; LUCA. DR OMA; QEKAFGF; -. DR OrthoDB; EOG6F297P; -. DR BioCyc; HPY:HP1343-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR005496; Integral_membrane_TerC. DR Pfam; PF03741; TerC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 76 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 106 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 211 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 217 235 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 242 AA; 27112 MW; 6CD9F8D836868177 CRC64; MEFLSSLLDA LSTTHGIVSL ATLTLLEIIL GIDNIIFIMV MVYKLPKHQQ NKAMILGLGL AMIARIGLLG SLFFISHLQK PLFVIAGMSF SWRDVVLLAG GAFLAFKALV ELKEQIYPKE KRQEKAFGFS ITLIEIMFLD IVFSLDSVIT AIGIAKHLEV MTLAIILSVI VMMFFSKIVG DFIEKHYRVK TLAFVFLLVV GVILFLEGLH LHINKNYLYA GIGFALLIEC LNIFIEKKMK KS // ID O25030_HELPY Unreviewed; 362 AA. AC O25030; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 80. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07316.1}; GN OrderedLocusNames=HP_0248 {ECO:0000313|EMBL:AAD07316.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07316.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07316.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07316.1; -; Genomic_DNA. DR PIR; H64550; H64550. DR RefSeq; NP_207046.1; NC_000915.1. DR RefSeq; WP_001121076.1; NC_018939.1. DR ProteinModelPortal; O25030; -. DR STRING; 85962.HP0248; -. DR PaxDb; O25030; -. DR EnsemblBacteria; AAD07316; AAD07316; HP_0248. DR GeneID; 899177; -. DR KEGG; heo:C694_01255; -. DR KEGG; hpy:HP0248; -. DR PATRIC; 20591721; VBIHelPyl33062_0259. DR eggNOG; ENOG4107T8E; Bacteria. DR eggNOG; COG0330; LUCA. DR OMA; WEDKIIN; -. DR OrthoDB; EOG6G4VVH; -. DR BioCyc; HPY:HP0248-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR001107; Band_7. DR InterPro; IPR000163; Prohibitin. DR InterPro; IPR001972; Stomatin_fam. DR PANTHER; PTHR10264; PTHR10264; 2. DR Pfam; PF01145; Band_7; 1. DR PRINTS; PR00679; PROHIBITIN. DR SMART; SM00244; PHB; 1. DR SUPFAM; SSF117892; SSF117892; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 58 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 59 242 PHB. {ECO:0000259|SMART:SM00244}. FT COILED 241 263 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 362 AA; 40005 MW; 29B6E08B7F7FE877 CRC64; MPIDLNEHLK KKNSQRETPT PNTPNNGGRF IPPSNSFNSK KLSVLIVIVL LGVIAFLAKP FEVISSGEIG IKITAGKYEP TPLQPGIHFF VPIIQDILIV DTRIRNINFS RTEDMGVAGK NQGIFRNDAI NVMDSRGLTV SIELTVQYRL NPQTTPQTIA TYGLSWEQKI INPVVRDVVR SVVGRYPAED LPIKRNEIAA LINSGINKEV SKLPNTPVEL SSIQLREIVL PAKIKEQIEK VQIARQESER VKYEVERSKQ EAQKQAALAK GEADANRIKA QGVADAIVIE AKAKSQANLS ISQSLSDKLL RLRQIEVQGQ FNEALKTNNN AQIMLTPGGA VPNIWIDTKS KVKSSIAETK EP // ID O25023_HELPY Unreviewed; 307 AA. AC O25023; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 97. DE SubName: Full=Octaprenyl-diphosphate synthase (IspB) {ECO:0000313|EMBL:AAD07307.1}; GN OrderedLocusNames=HP_0240 {ECO:0000313|EMBL:AAD07307.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07307.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07307.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3TC1} RP X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS). RA Zhang J.Y., Zhang X.L., Li D.F., Zou Q.M., Wang D.C.; RT "Crystal Structure of Octaprenyl Pyrophosphate Synthase from RT Helicobacter pylori."; RL Submitted (AUG-2011) to the PDB data bank. CC -!- SIMILARITY: Belongs to the FPP/GGPP synthase family. CC {ECO:0000256|RuleBase:RU004466}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07307.1; -; Genomic_DNA. DR PIR; H64549; H64549. DR RefSeq; NP_207038.1; NC_000915.1. DR RefSeq; WP_001156669.1; NC_018939.1. DR PDB; 3TC1; X-ray; 2.00 A; A/B=1-307. DR PDBsum; 3TC1; -. DR ProteinModelPortal; O25023; -. DR STRING; 85962.HP0240; -. DR PaxDb; O25023; -. DR DNASU; 899975; -. DR EnsemblBacteria; AAD07307; AAD07307; HP_0240. DR GeneID; 899975; -. DR KEGG; heo:C694_01215; -. DR KEGG; hpy:HP0240; -. DR PATRIC; 20591705; VBIHelPyl33062_0251. DR eggNOG; ENOG4105EAH; Bacteria. DR eggNOG; COG0142; LUCA. DR KO; K02523; -. DR OMA; AIVEMIQ; -. DR OrthoDB; EOG6TN43W; -. DR BioCyc; HPY:HP0240-MONOMER; -. DR BRENDA; 2.5.1.90; 2604. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.600.10; -; 1. DR InterPro; IPR008949; Isoprenoid_synthase_dom. DR InterPro; IPR000092; Polyprenyl_synt. DR InterPro; IPR017446; Polyprenyl_synth-rel. DR PANTHER; PTHR12001; PTHR12001; 1. DR Pfam; PF00348; polyprenyl_synt; 1. DR SUPFAM; SSF48576; SSF48576; 1. DR PROSITE; PS00444; POLYPRENYL_SYNTHASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3TC1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000256|RuleBase:RU004466}. SQ SEQUENCE 307 AA; 35048 MW; CED503D6271FB3A0 CRC64; MQEKQLKTIQ NKIASWIKEI ESAFIDELFS KIGPSKMLRS KLMLALLNEK TDAILLDKAF NLCAIVEMIQ TASLLHDDVI DKAAMRRKLP SINALFGNFN AVMLGDVFYS KAFFELSKMG ESIAKSLSNA VLRLSRGEIE DVFVGGSFNS DKQKYWRILE DKTAHFIEAS LKSMAILLNK DAKMYADFGL NFGMAFQIID DLLDITQDAK TLGKPNFSDF KEGKTTLPYL LLYEKLNQRD QGLLISYFKQ DSHEIIEWTK EKFKQYGTIE ETLKIAQVYS KKALEAIKGE NNLILEKLAQ DVIYRTF // ID O25906_HELPY Unreviewed; 290 AA. AC O25906; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08407.1}; GN OrderedLocusNames=HP_1351 {ECO:0000313|EMBL:AAD08407.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08407.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08407.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08407.1; -; Genomic_DNA. DR PIR; G64688; G64688. DR RefSeq; NP_208143.1; NC_000915.1. DR RefSeq; WP_000386427.1; NC_018939.1. DR ProteinModelPortal; O25906; -. DR STRING; 85962.HP1351; -. DR REBASE; 56830; Hpy26695ORF6975P. DR PaxDb; O25906; -. DR EnsemblBacteria; AAD08407; AAD08407; HP_1351. DR GeneID; 900351; -. DR KEGG; heo:C694_06970; -. DR KEGG; hpy:HP1351; -. DR PATRIC; 20594087; VBIHelPyl33062_1414. DR OMA; DAFECLI; -. DR OrthoDB; EOG6PP9JZ; -. DR BioCyc; HPY:HP1351-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 290 AA; 34799 MW; 04E51EE84B7214EA CRC64; MDYQTFNEIF NRFVFGTSKA KLLENIAENP ERYLGIFRPT KPKTKLLQNL LTSHEIKFGD AFEYLIEQYL KEHNFSPLSK KIPYYNKNKE KRESLELDQL AKKDNTYYFI EQKMRDDHDS AKKRGQIDNF ERKLEALIHR YGENIQGYFY FIDESLNKNQ NYYKEELQKL SVGYGVPLRL CYGKELFENL NILQVWDEVL NHLARWREIL PDLPSLNFDE NPLESFREIK DLAPSVYRKL LDNDEIFNLV LILFPEQKAL KMLAEHFKRQ NKTIYQQLAS KLEEKLLSLR // ID O25429_HELPY Unreviewed; 355 AA. AC O25429; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07788.1}; GN OrderedLocusNames=HP_0729 {ECO:0000313|EMBL:AAD07788.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07788.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07788.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07788.1; -; Genomic_DNA. DR PIR; A64611; A64611. DR RefSeq; NP_207523.1; NC_000915.1. DR RefSeq; WP_001016095.1; NC_018939.1. DR ProteinModelPortal; O25429; -. DR IntAct; O25429; 1. DR STRING; 85962.HP0729; -. DR PaxDb; O25429; -. DR EnsemblBacteria; AAD07788; AAD07788; HP_0729. DR GeneID; 899011; -. DR KEGG; heo:C694_03750; -. DR KEGG; hpy:HP0729; -. DR PATRIC; 20592745; VBIHelPyl33062_0761. DR eggNOG; ENOG4106NCB; Bacteria. DR eggNOG; ENOG410YDJX; LUCA. DR OMA; EYEIYLF; -. DR OrthoDB; EOG64FKBD; -. DR BioCyc; HPY:HP0729-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 355 AA; 41827 MW; A5C591EE8D494A88 CRC64; MNHLLILYNP YYQQDVIQQH LSVLQEKSQV GFGKIRSKLN DQEKQDSLEE IYKATNEKNF LQLFLTDYAN LFAAKVIKVS KDIDESLIPS YYKEKNLEVE DFFIISDLRE LVREDFSLLR DQFLANFIAP NNHTYAIYGN NYVYPLPVRL KEERSYFLGD EKHYLSVYKS KEYLTMQENF MRFVFGKRLF YLLHPDSINN IIHAELELLQ SENDLLNDFT SIIVKYSKTL EYEIYLFAKK VLLKACKNDP SLYDLAYEVQ GKSYTLKDFF TKKPNLGSVK FLLRHEKVQY HLEENLNRFI NYPFSKSISL IQEIRNEAVH QKAPGLNEVE KLRNEILGIE GASLLKGVLT HKETS // ID O25807_HELPY Unreviewed; 578 AA. AC O25807; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 119. DE SubName: Full=Multidrug resistance protein (HetA) {ECO:0000313|EMBL:AAD08251.1}; GN OrderedLocusNames=HP_1206 {ECO:0000313|EMBL:AAD08251.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08251.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08251.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08251.1; -; Genomic_DNA. DR PIR; F64670; F64670. DR RefSeq; NP_207998.1; NC_000915.1. DR RefSeq; WP_001074915.1; NC_018939.1. DR ProteinModelPortal; O25807; -. DR STRING; 85962.HP1206; -. DR PaxDb; O25807; -. DR EnsemblBacteria; AAD08251; AAD08251; HP_1206. DR GeneID; 898800; -. DR KEGG; heo:C694_06245; -. DR KEGG; hpy:HP1206; -. DR PATRIC; 20593783; VBIHelPyl33062_1264. DR eggNOG; ENOG4105BZ1; Bacteria. DR eggNOG; COG1132; LUCA. DR KO; K06148; -. DR OMA; GMINYYN; -. DR OrthoDB; EOG6T7N3V; -. DR BioCyc; HPY:HP1206-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011527; ABC1_TM_dom. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90123; SSF90123; 2. DR PROSITE; PS50929; ABC_TM1F; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 113 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 181 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 187 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 278 297 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 34 334 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50929}. FT DOMAIN 365 577 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 578 AA; 66342 MW; 5E088065455BCAFF CRC64; MAKKKHKIST LKYFLRSLKQ IYMLITFKEK MVFFLLVLMA VFSSFVEVMS LTLLMPFITL ASDPNRALDD KDWKMVYDFF HFSSPVRLMY FFSFCLVGIY LFRMFYGVSF TYLKGRFSNK KAYQIKQQLF LQHIKSNYLS HLNHNLDSLR DIINNKAEGM FMSFNAFLSL LTEITVIVFF YSTLILTNWK ITLVFTMILA LQIFLIVKKV TVLIKKKGEM AAKSKAQTLK VFSKFFSNFK ITKLKDNHEE AHKLFGENSR KAHDTEIIYA TLQVVPRYSI ETVGFSLLIL AVAYILFKYG EAKMVLPTIS MYALALYRIL PSVTGMINYY NEIAYNQLAT NMVFKSLSKT IVEEDLVPLD FNEKITLQNI SFAYKSKHPV LKDFNLTIQR GQKVALIGHS GCGKSTLADI IMGLTYPKSG EIFIDNTLLT NKNRRSWRKK IGYIPQNIYL FDGTVGDNIA FGSAIDEKRL IKVCKMAHIY DFLCEHEGLK TQVGEGGAKL SGGQKQRIGI ARALYDNPEI LVLDEATSAL DNETESKIMD EIYQIAKNKT LIVIAHRLST IERCEVIIDM SQHKDNLG // ID O25558_HELPY Unreviewed; 370 AA. AC O25558; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Hydrogenase expression/formation protein (HypD) {ECO:0000313|EMBL:AAD07944.1}; GN OrderedLocusNames=HP_0898 {ECO:0000313|EMBL:AAD07944.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07944.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07944.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07944.1; -; Genomic_DNA. DR PIR; B64632; B64632. DR RefSeq; NP_207691.1; NC_000915.1. DR RefSeq; WP_000109824.1; NC_018939.1. DR ProteinModelPortal; O25558; -. DR DIP; DIP-3180N; -. DR IntAct; O25558; 1. DR MINT; MINT-171767; -. DR STRING; 85962.HP0898; -. DR PaxDb; O25558; -. DR EnsemblBacteria; AAD07944; AAD07944; HP_0898. DR GeneID; 899428; -. DR KEGG; heo:C694_04610; -. DR KEGG; hpy:HP0898; -. DR PATRIC; 20593089; VBIHelPyl33062_0930. DR eggNOG; ENOG4105CQS; Bacteria. DR eggNOG; COG0409; LUCA. DR KO; K04654; -. DR OMA; LFFHINH; -. DR OrthoDB; EOG6MD939; -. DR BioCyc; HPY:HP0898-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR InterPro; IPR002780; Hyd_form_HypD. DR Pfam; PF01924; HypD; 1. DR PIRSF; PIRSF005622; Hydrgn_mat_hypD; 1. DR TIGRFAMs; TIGR00075; hypD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 370 AA; 41062 MW; AB9FDAC45521AF37 CRC64; MSVDHLISPF RDKRTLLALS NAIKKLAFKL EKKLVIMEVC GGHTHSIMKY GLLDLMPNNL EFVHGPGCPV CVMPRARLDE AYELATIKDS IVLSLGDMMR VPGSYGSLIQ AREKGLDARF LYSPMQALEI AKENPTKKVI YIAIGFETTT PMSASVLWSA KKEKINNLFF HINHILVPPS VSAILKDPAC QINALLAPSH VSVISGAQIY APLVDRFKIP IIVSGFEPVD ILESVLMLIK QALNKEAKLE IQYKRAVSFE GNVKAQELVN ACMEVRENFE WRGLGNIKRS ALKLKEAFAS YDAEEVFKEY LSHKTSKENK ACKCGEILKG IAKPLDCSLF ATTCTPQNPI GSCMVSSEGA CAAYYRYKRV // ID O25902_HELPY Unreviewed; 330 AA. AC O25902; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 112. DE SubName: Full=Glyceraldehyde-3-phosphate dehydrogenase (Gap) {ECO:0000313|EMBL:AAD08387.1}; GN OrderedLocusNames=HP_1346 {ECO:0000313|EMBL:AAD08387.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08387.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08387.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the glyceraldehyde-3-phosphate CC dehydrogenase family. {ECO:0000256|RuleBase:RU000397}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08387.1; -; Genomic_DNA. DR PIR; B64688; B64688. DR RefSeq; NP_208138.1; NC_000915.1. DR RefSeq; WP_001122605.1; NC_018939.1. DR ProteinModelPortal; O25902; -. DR IntAct; O25902; 1. DR STRING; 85962.HP1346; -. DR PaxDb; O25902; -. DR EnsemblBacteria; AAD08387; AAD08387; HP_1346. DR GeneID; 900357; -. DR KEGG; heo:C694_06945; -. DR KEGG; hpy:HP1346; -. DR PATRIC; 20594077; VBIHelPyl33062_1409. DR eggNOG; ENOG4105C17; Bacteria. DR eggNOG; COG0057; LUCA. DR KO; K00134; -. DR OMA; NDQNNID; -. DR OrthoDB; EOG66TG3S; -. DR BioCyc; HPY:HP1346-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0016620; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0006006; P:glucose metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR020831; GlycerAld/Erythrose_P_DH. DR InterPro; IPR020829; GlycerAld_3-P_DH_cat. DR InterPro; IPR020828; GlycerAld_3-P_DH_NAD(P)-bd. DR InterPro; IPR006424; Glyceraldehyde-3-P_DH_1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR10836; PTHR10836; 1. DR Pfam; PF02800; Gp_dh_C; 1. DR Pfam; PF00044; Gp_dh_N; 1. DR PIRSF; PIRSF000149; GAP_DH; 1. DR PRINTS; PR00078; G3PDHDRGNASE. DR SMART; SM00846; Gp_dh_N; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01534; GAPDH-I; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Oxidoreductase {ECO:0000256|RuleBase:RU004274}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 149 Gp_dh_N. {ECO:0000259|SMART:SM00846}. SQ SEQUENCE 330 AA; 36021 MW; C5053242B30CB8D5 CRC64; MPIRIAINGT GRIGLCAIRV ASQRKDIEIV AINSTAELET LLHLIRHDSV HGHFEAQLNA DRTLNIGHSK NILVLSERDI NKLDFSAANA EIIIECTGKF NSLEASSAHL KNSVKKVIIS APAQNTPTFV YGVNHKNYHN ESVISNASCT TNASAPLLKI LDEAFKVENA LLTTIHSYTN DQNLLDTKHK DIRRARAAGL NLIPTSTGVS KAISLVLPHL GPKVTGLAIR VPTPNVSLVD LSLNFKKSVS KASVQHALKD ACKHAFKGVV SIDEERLVSS DFISSPFSAI VIDDQIMTIG EKNAKVLAWY DNEMGYSERL IDMAQYIAQN // ID O24951_HELPY Unreviewed; 242 AA. AC O24951; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD07207.1}; GN OrderedLocusNames=HP_0139 {ECO:0000313|EMBL:AAD07207.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07207.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07207.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07207.1; -; Genomic_DNA. DR PIR; C64537; C64537. DR RefSeq; NP_206939.1; NC_000915.1. DR RefSeq; WP_000867263.1; NC_018939.1. DR ProteinModelPortal; O24951; -. DR STRING; 85962.HP0139; -. DR PaxDb; O24951; -. DR EnsemblBacteria; AAD07207; AAD07207; HP_0139. DR GeneID; 899133; -. DR KEGG; heo:C694_00685; -. DR KEGG; hpy:HP0139; -. DR PATRIC; 20591495; VBIHelPyl33062_0147. DR eggNOG; ENOG4105CHG; Bacteria. DR eggNOG; COG0247; LUCA. DR KO; K18928; -. DR OMA; NSCLMHI; -. DR OrthoDB; EOG6GTZM6; -. DR BioCyc; HPY:HP0139-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR004017; Cys_rich_dom. DR Pfam; PF02754; CCG; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 3 85 CCG. {ECO:0000259|Pfam:PF02754}. FT DOMAIN 132 216 CCG. {ECO:0000259|Pfam:PF02754}. SQ SEQUENCE 242 AA; 27492 MW; 3970E6860F87F662 CRC64; MKVNFFATCL GAAIYSNASL NAIKLLRKEN LEVVFKKDQT CCGQPSYNSG YYEETKKVVL YNIKLYSNND YPIILPSGSC TGMMRHDYLE LFEGHAEFNM VKDFCSRVYE LSEFLDKKLQ VKYEDKGEPL KITWHSNCHA LRVAKVIDSA KNLIRQLKNV ELIELEKEEE CCGFGGTFSV KEPEISAVMV KEKIKNIESR QVDVIVSADA GCLMNISTAM QKMGSLTKPM HFYDFLASRL GL // ID O26050_HELPY Unreviewed; 967 AA. AC O26050; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Type III restriction enzyme R protein (Res) {ECO:0000313|EMBL:AAD08561.1}; GN OrderedLocusNames=HP_1521 {ECO:0000313|EMBL:AAD08561.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08561.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08561.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08561.1; -; Genomic_DNA. DR PIR; A64710; A64710. DR RefSeq; NP_208312.1; NC_000915.1. DR RefSeq; WP_000693702.1; NC_018939.1. DR ProteinModelPortal; O26050; -. DR DIP; DIP-3585N; -. DR IntAct; O26050; 2. DR MINT; MINT-171226; -. DR STRING; 85962.HP1521; -. DR REBASE; 56815; Hpy26695ORFBP. DR PaxDb; O26050; -. DR EnsemblBacteria; AAD08561; AAD08561; HP_1521. DR GeneID; 899770; -. DR KEGG; heo:C694_07875; -. DR KEGG; hpy:HP1521; -. DR PATRIC; 20594459; VBIHelPyl33062_1598. DR eggNOG; ENOG4105D8D; Bacteria. DR eggNOG; COG3587; LUCA. DR KO; K01156; -. DR OMA; VETMGND; -. DR OrthoDB; EOG6MPWQ7; -. DR BioCyc; HPY:HP1521-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF04851; ResIII; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 68 252 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. SQ SEQUENCE 967 AA; 111514 MW; 7521FCE5E49F8A8C CRC64; MKIKFKRLDY QEQCRDQILG VFKGIDLKEP ENDAQRISNP VFEIGAIKDL LLENIENLRS KQKITQGSVG IDKSLNCDIL METGTGKTFC FLECVYALHK NHHLSKFIVL TPSNAIKLGV LKSVEITREF FKSEYSNTHL ESYEDIERFI LASNHKCCVL VMTFSAFNKE KNTINKSCLE NTNLFNGATS YMQALVSMRP IVIMDEPHRF LGDKTKKYLE QLNALLTLRF GATFKDDYNN LIYTLDSKKA FDCALVKSIS VASVGESNEC FLELKGIEKK EAAINYTDLE NKTQSVKVKE HDNLGVVTQI SALEDYIVEK ITKTEIRFLN GFNLLLDQKE PFSHLLEGEQ EVMLKEAIKS HFEREEGLFK KGIKALCMVF ISGVNSYLSE NEKPAKLALL FEKLYQQKLE EVLKKPLDEN YRAYLECTRE DIKKVHGGYF AKSKKEGDET KTIELILKEK EKLLSFDSDL RFIFSQWALQ EGWDNPNVMT ICKLAPSHSN ITKLQQIGRG LRLAVNDKGE RITKEHADFD FVNELVVIVP QVEGDFVGAI QQEISEHSLI KQEFSAEELE KSGVVKKGRY GFLLETLEGL GFGEKTGDEN FKLTLNQNEF LEKEPELEKL KDEKYLDFEK LKDFLKDRLI GNSRVRDKNE RKSEKIKINK ENFKKFETLW ESLNHQARIA YAIDSESLID EIVKNINSSF NVSSKIVSVT THKKVETMGN NAKTEIFERE NACVWSLHEF ISALSNKVKL SFKSVAKVLE NIDENKFNEI KKNEQEGLRR LEELFLEIIY QNIKDKISYQ MRETTIKNRK NDAFYDEKGE IREFLDGSLG ADKYEIKNSS VREKCLYENF MQVDSEIEKD TIEESNDTKI IVFGKLPRVK IPIGLNQTYS PDFGYVVENN DKKVLLVVET KGVDKKSELR PEEERKISTA KKFFEALKKQ GVNIEYKTKM EKDQLSALIN EVLNRKD // ID O24869_HELPY Unreviewed; 30 AA. AC O24869; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07096.1}; GN OrderedLocusNames=HP_0024 {ECO:0000313|EMBL:AAD07096.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07096.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07096.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07096.1; -; Genomic_DNA. DR PIR; H64522; H64522. DR RefSeq; NP_206826.1; NC_000915.1. DR RefSeq; WP_000649863.1; NC_018939.1. DR STRING; 85962.HP0024; -. DR PaxDb; O24869; -. DR EnsemblBacteria; AAD07096; AAD07096; HP_0024. DR GeneID; 899107; -. DR KEGG; heo:C694_00110; -. DR KEGG; hpy:HP0024; -. DR OrthoDB; EOG6D8BJH; -. DR BioCyc; HPY:HP0024-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 30 AA; 3741 MW; EE1313DE75CBBB26 CRC64; MKCKSGKRSW KLLYLEISFS WFKVVFLMKR // ID O25861_HELPY Unreviewed; 612 AA. AC O25861; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 108. DE SubName: Full=NADH-ubiquinone oxidoreductase, NQO12 subunit (NQO12) {ECO:0000313|EMBL:AAD08315.1}; GN OrderedLocusNames=HP_1271 {ECO:0000313|EMBL:AAD08315.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08315.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08315.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU000320}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU000320}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08315.1; -; Genomic_DNA. DR PIR; G64678; G64678. DR RefSeq; NP_208063.1; NC_000915.1. DR RefSeq; WP_001200192.1; NC_018939.1. DR ProteinModelPortal; O25861; -. DR STRING; 85962.HP1271; -. DR PaxDb; O25861; -. DR EnsemblBacteria; AAD08315; AAD08315; HP_1271. DR GeneID; 898818; -. DR KEGG; heo:C694_06570; -. DR KEGG; hpy:HP1271; -. DR PATRIC; 20593919; VBIHelPyl33062_1330. DR eggNOG; ENOG4105D65; Bacteria. DR eggNOG; COG1009; LUCA. DR KO; K00341; -. DR OMA; MLNNADY; -. DR OrthoDB; EOG6FZ48R; -. DR BioCyc; HPY:HP1271-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR InterPro; IPR003945; NADHpl_OxRdtase_5. DR InterPro; IPR018393; NADHpl_OxRdtase_5_subgr. DR InterPro; IPR001750; ND/Mrp_mem. DR InterPro; IPR001516; Proton_antipo_N. DR Pfam; PF00361; Proton_antipo_M; 1. DR Pfam; PF00662; Proton_antipo_N; 1. DR PRINTS; PR01435; NPOXDRDTASE5. DR TIGRFAMs; TIGR01974; NDH_I_L; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:AAD08315.1}. FT TRANSMEM 31 53 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 105 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 117 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 159 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 180 198 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 226 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 265 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 277 298 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 305 327 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 333 351 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 372 391 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 411 436 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 448 469 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 489 511 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 592 611 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 65 122 Proton_antipo_N. FT {ECO:0000259|Pfam:PF00662}. FT DOMAIN 134 422 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 612 AA; 68097 MW; FE70D8C9C0897DEC CRC64; MQYSSLLSVV LFLPLIGAIY AGLFGAKAKA LHVGVFNSLC VLVSFIGAVV LFIQAWHHQS YEKYLFDWIV VGNFKVGFSL MLDNINAVMI VVVTLVSFLV HVYSIGYMEH DAGFNRYFSY LSGFVFSMLV LVLSDNFLGL FIGWEGVGLC SYLLIGFWYH KTSANNASIE AFVMNRITDL GMLMGIILIF WNFGTLQYKE VFSMLNNTDY SMLFYISVFL FIGAMGKSAQ FPMHTWLANA MEGPTPVSAL IHAATMVTAG VYLVIRANPL YSAVFEVGYF IACLGAFVAL FGASMALVNK DLKRIVAYST LSQLGYMFVA AGLGAYAIAL FHLFTHAFFK SLLFLGSGNV MHAMEDNLDI TKMGALYKPM RITAVFMIIG SVALCGIYPF AGYFSKDKIL EVAFGMHHHI LWFALLIGAI FTAFYSFRLI MLVFFAPKQH EINHPHEAQN FMLLSMLPLG VLAVIAGFFE EPFFHFISQV IPSVGEYLVP LALLISITTI VVLLSIAYAI FKYKNGITSK KEGGFLYKLL LNQYYIPQLY QGIAKVFSAI ASFLHQVVEL KIIDAIVDAI GRSVFVIGRV FRISQDGNLT SMLRFMVAGV LILLAFVAFF GR // ID O25226_HELPY Unreviewed; 211 AA. AC O25226; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Adenine specific DNA methyltransferase (MFOKI) {ECO:0000313|EMBL:AAD07547.1}; GN OrderedLocusNames=HP_0481 {ECO:0000313|EMBL:AAD07547.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07547.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07547.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07547.1; -; Genomic_DNA. DR PIR; A64580; A64580. DR ProteinModelPortal; O25226; -. DR IntAct; O25226; 16. DR MINT; MINT-162687; -. DR STRING; 85962.HP0481; -. DR REBASE; 3073; M.HpyAORF481P. DR PaxDb; O25226; -. DR EnsemblBacteria; AAD07547; AAD07547; HP_0481. DR KEGG; heo:C694_02465; -. DR PATRIC; 20592233; VBIHelPyl33062_0505. DR eggNOG; COG0338; LUCA. DR KO; K06223; -. DR OMA; YLAPLMC; -. DR OrthoDB; EOG6CS08V; -. DR BioCyc; HPY:HP0481-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0009007; F:site-specific DNA-methyltransferase (adenine-specific) activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR012327; MeTrfase_D12. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02086; MethyltransfD12; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07547.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07547.1}. SQ SEQUENCE 211 AA; 24085 MW; 0D89F62C21B8FFAF CRC64; MHANLFNQNA SKKDVFLHNL RSNNGRYKRY IKAPLRYGGG KSLAVGLIVE CIPNGVRRMI SPFIGGGSVE IACAAELGLE VLGFDIFDIL VNFYQVLLKD KQALYNHLLS LEPTRETYNI IKQELKAHYK KECTLDPLIL ARDYYFNFNL SYGPGFLGWM SKIYTDKQRY LNALLKIKGF NAPSLKVECS SFEEVLLAYP NDFFYLAPLM C // ID O25432_HELPY Unreviewed; 118 AA. AC O25432; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07791.1}; GN OrderedLocusNames=HP_0732 {ECO:0000313|EMBL:AAD07791.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07791.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07791.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07791.1; -; Genomic_DNA. DR PIR; D64611; D64611. DR ProteinModelPortal; O25432; -. DR STRING; 85962.HP0732; -. DR PaxDb; O25432; -. DR PRIDE; O25432; -. DR EnsemblBacteria; AAD07791; AAD07791; HP_0732. DR OMA; IASSIWK; -. DR OrthoDB; EOG60CWK4; -. DR BioCyc; HPY:HP0732-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 118 AA; 14015 MW; D260A4CC5D82A900 CRC64; MESYGLACSD RRIIAGLVGI ASSIWKFFSS RYQRSQQRKE VDKNLHQICE KIVQDVKSRL ESRKKDIWEK IEKLKANLRP VDNYKRMKRQ LKEAHERLRY ISHSIHLIIS KQGACNEE // ID O25602_HELPY Unreviewed; 337 AA. AC O25602; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08005.1}; GN OrderedLocusNames=HP_0948 {ECO:0000313|EMBL:AAD08005.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08005.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08005.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08005.1; -; Genomic_DNA. DR PIR; D64638; D64638. DR RefSeq; NP_207740.1; NC_000915.1. DR RefSeq; WP_001213490.1; NC_018939.1. DR ProteinModelPortal; O25602; -. DR STRING; 85962.HP0948; -. DR PaxDb; O25602; -. DR EnsemblBacteria; AAD08005; AAD08005; HP_0948. DR GeneID; 899481; -. DR KEGG; heo:C694_04885; -. DR KEGG; hpy:HP0948; -. DR PATRIC; 20593209; VBIHelPyl33062_0986. DR eggNOG; ENOG4105FPI; Bacteria. DR eggNOG; ENOG4111PKZ; LUCA. DR OMA; DNLDKEC; -. DR OrthoDB; EOG60PH9R; -. DR BioCyc; HPY:HP0948-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 60 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 337 AA; 39700 MW; 5533F7EFA9730B5F CRC64; MRFYIIFTFL FIVGFGVFVY SIDPQAYAFN LGSYSFNLPI AVWLMGVLGM FAFFSWVFLF KHNLSHKIRL YHEKRDFDKL LKQILSQDTQ KTFLKTKFKS DLAKNLSQIL ARYDLKADLN TPNSGCEKVD NLFKHYHNIE NNTLEPKDHA KHSLAYEHAY FSKRLKAFIH NDLKNAFEVL TNAQIPLELR RYAFIEIAQK GNKKEVLKAL NAMQENLDKE CVKSFLKAFF EKSLNTDTLK ISELCKKVGY DKNDYLKLAQ KAQKFLVPDQ WFQFFEILSQ EDDKAQKAFL FVLLELEMND LAKEHLAVLS FEEYMLLNAY MDLKQEHKKA YKLEAFL // ID O25837_HELPY Unreviewed; 29 AA. AC O25837; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08289.1}; GN OrderedLocusNames=HP_1239 {ECO:0000313|EMBL:AAD08289.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08289.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08289.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08289.1; -; Genomic_DNA. DR PIR; G64674; G64674. DR RefSeq; WP_000536071.1; NC_018939.1. DR IntAct; O25837; 1. DR STRING; 85962.HP1239; -. DR PaxDb; O25837; -. DR EnsemblBacteria; AAD08289; AAD08289; HP_1239. DR BioCyc; HPY:HP1239-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 29 AA; 3207 MW; 1261AC8BBCF4D6A5 CRC64; MGSWSRILLS ILVVVLGLAL TAMLINWHV // ID O25736_HELPY Unreviewed; 186 AA. AC O25736; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Pyruvate ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:AAD08152.1}; GN OrderedLocusNames=HP_1108 {ECO:0000313|EMBL:AAD08152.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08152.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08152.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08152.1; -; Genomic_DNA. DR PIR; D64658; D64658. DR RefSeq; NP_207899.1; NC_000915.1. DR RefSeq; WP_000486467.1; NC_018939.1. DR ProteinModelPortal; O25736; -. DR STRING; 85962.HP1108; -. DR PaxDb; O25736; -. DR EnsemblBacteria; AAD08152; AAD08152; HP_1108. DR GeneID; 899644; -. DR KEGG; heo:C694_05715; -. DR KEGG; hpy:HP1108; -. DR PATRIC; 20593557; VBIHelPyl33062_1158. DR eggNOG; ENOG4105EJ5; Bacteria. DR eggNOG; COG1014; LUCA. DR KO; K00172; -. DR OMA; HEKFMNP; -. DR OrthoDB; EOG6VMTKB; -. DR BioCyc; HPY:HP1108-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016625; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor; IEA:InterPro. DR Gene3D; 3.40.920.10; -; 1. DR InterPro; IPR011894; PorC_KorC. DR InterPro; IPR019752; Pyrv/ketoisovalerate_OxRed_cat. DR InterPro; IPR002869; Pyrv_flavodox_OxRed_cen. DR Pfam; PF01558; POR; 1. DR SUPFAM; SSF53323; SSF53323; 1. DR TIGRFAMs; TIGR02175; PorC_KorC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Pyruvate {ECO:0000313|EMBL:AAD08152.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 10 183 POR. {ECO:0000259|Pfam:PF01558}. SQ SEQUENCE 186 AA; 20966 MW; AE9BA01D2E37CBED CRC64; MFQIRWHARA GQGAITGAKG LADVISKTGK EVQAFASYGS AKRGAAMMAY NRVDDEPILN HERFMQPDYV LVIDPGLVFI ENIFANEKED TTYIITSYLN KEELFEKKPE LKTRKVFLVD CLKISMETLK RPIPNTPMLG ALMKVSGMLE IGAFKEAFKK VLGKKLTQEV IDANMLAIQR AYEEVQ // ID O26099_HELPY Unreviewed; 142 AA. AC O26099; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08624.1}; GN OrderedLocusNames=HP_1579 {ECO:0000313|EMBL:AAD08624.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08624.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08624.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08624.1; -; Genomic_DNA. DR PIR; C64717; C64717. DR RefSeq; NP_208370.1; NC_000915.1. DR RefSeq; WP_000914282.1; NC_018939.1. DR ProteinModelPortal; O26099; -. DR IntAct; O26099; 1. DR STRING; 85962.HP1579; -. DR PaxDb; O26099; -. DR EnsemblBacteria; AAD08624; AAD08624; HP_1579. DR GeneID; 899712; -. DR KEGG; heo:C694_08180; -. DR KEGG; hpy:HP1579; -. DR PATRIC; 20594585; VBIHelPyl33062_1660. DR OMA; YFEKDFK; -. DR OrthoDB; EOG62ZHW9; -. DR BioCyc; HPY:HP1579-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 142 AA; 16473 MW; 9981A1D9407C600D CRC64; MLKKLLFIAL FLGFLRAEGE HYEIIVELSK AFLKAQEVLT TIHQAYKTCI ETGHDRTQIR LQSAFLENLS QTEQQFDDYF EKDFKSVEVL KTLLKNLQSL EKTSNKLACI TPKNAKNFEI LEGAITQIID LEKQMDKFIN KN // ID O25993_HELPY Unreviewed; 303 AA. AC O25993; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08497.1}; GN OrderedLocusNames=HP_1454 {ECO:0000313|EMBL:AAD08497.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08497.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08497.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08497.1; -; Genomic_DNA. DR PIR; F64701; F64701. DR RefSeq; NP_208245.1; NC_000915.1. DR RefSeq; WP_000720409.1; NC_018939.1. DR ProteinModelPortal; O25993; -. DR DIP; DIP-3294N; -. DR IntAct; O25993; 2. DR MINT; MINT-163515; -. DR STRING; 85962.HP1454; -. DR PaxDb; O25993; -. DR EnsemblBacteria; AAD08497; AAD08497; HP_1454. DR GeneID; 899839; -. DR KEGG; heo:C694_07530; -. DR KEGG; hpy:HP1454; -. DR PATRIC; 20594317; VBIHelPyl33062_1527. DR eggNOG; ENOG4106E51; Bacteria. DR eggNOG; ENOG410Y3MR; LUCA. DR OMA; YANKEGQ; -. DR OrthoDB; EOG60PHJ1; -. DR BioCyc; HPY:HP1454-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR024952; Lipo_LPP20-like. DR Pfam; PF02169; LPP20; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 303 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158602. SQ SEQUENCE 303 AA; 33871 MW; 46A2EFCF57F63216 CRC64; MKKIILACLM AFVGANLSAE PKWYSKAYNK TNTQKGYLYG SGSATSKEAS KQKALADLVA SISVVVNSQI HIQKSRVDNK LKSSDSQTIN LKTDDLELNN VEIVNQEVQK GIYYTRVRIN QNLFLQGLRD KYNALYGQFS TLMPKVCKGV FLQQSKSMGD LLAKAMPIER ILKAYSVPVG SLENYEKIYY QNAFKPKVQI TFDNNGDAEI KSALISAYAR VLTPSDEEKL YQIKNEVFTD SANGITRIRV VVSASDCQGT PVLNRSLEVD EKNKNFAITR LQSLLYKELK DYANKEGQGN TGL // ID O25658_HELPY Unreviewed; 262 AA. AC O25658; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 106. DE SubName: Full=7-alpha-hydroxysteroid dehydrogenase (HdhA) {ECO:0000313|EMBL:AAD08058.1}; GN OrderedLocusNames=HP_1014 {ECO:0000313|EMBL:AAD08058.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08058.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08058.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08058.1; -; Genomic_DNA. DR PIR; F64646; F64646. DR RefSeq; NP_207804.1; NC_000915.1. DR RefSeq; WP_001014495.1; NC_018939.1. DR ProteinModelPortal; O25658; -. DR DIP; DIP-3619N; -. DR IntAct; O25658; 1. DR MINT; MINT-173412; -. DR STRING; 85962.HP1014; -. DR PaxDb; O25658; -. DR EnsemblBacteria; AAD08058; AAD08058; HP_1014. DR GeneID; 899549; -. DR KEGG; heo:C694_05250; -. DR KEGG; hpy:HP1014; -. DR PATRIC; 20593363; VBIHelPyl33062_1062. DR eggNOG; ENOG4105CSJ; Bacteria. DR eggNOG; COG0623; LUCA. DR KO; K00076; -. DR OMA; YTKANIA; -. DR OrthoDB; EOG6N3CR8; -. DR BioCyc; HPY:HP1014-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 1. DR PRINTS; PR00081; GDHRDH. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 262 AA; 28507 MW; D98C234E58481FF6 CRC64; MNGSNHMKNK TLVISGATRG IGKAIFVRFA QSGVNIAFTY NKNVEEANKI IEDVEQKYSI KAKAYSLNVL EPEQYTELFK QIDADFDRVD FFISNAIIYG RSVVGGFAPF MRLKPKGLNN IYTATVLAFV VGAQEAAKRM QKIGGGAIVS LSSTGNLVYM PNYAGHGNSK NAVETMVKYA AVDLGEFNIR VNAVSGGPID TDALKAFPDY VEIKEKVEEQ SPLKRMGNPN DLAGAAYFLC DETQSGWLTG QTIVVDGGTT FK // ID O25265_HELPY Unreviewed; 252 AA. AC O25265; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Cag pathogenicity island protein (Cag10) {ECO:0000313|EMBL:AAD07597.1}; GN OrderedLocusNames=HP_0530 {ECO:0000313|EMBL:AAD07597.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07597.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07597.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07597.1; -; Genomic_DNA. DR PIR; B64586; B64586. DR RefSeq; NP_207326.1; NC_000915.1. DR RefSeq; WP_000900785.1; NC_018939.1. DR ProteinModelPortal; O25265; -. DR IntAct; O25265; 8. DR STRING; 85962.HP0530; -. DR TCDB; 3.A.7.12.1; the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family. DR PaxDb; O25265; -. DR EnsemblBacteria; AAD07597; AAD07597; HP_0530. DR GeneID; 899269; -. DR KEGG; heo:C694_02735; -. DR KEGG; hpy:HP0530; -. DR PATRIC; 20592335; VBIHelPyl33062_0556. DR eggNOG; COG3736; LUCA. DR KO; K12095; -. DR OMA; ENVANEY; -. DR OrthoDB; EOG64BQ4Q; -. DR BioCyc; HPY:HP0530-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032710; NTF2-like_dom. DR InterPro; IPR007430; VirB8. DR Pfam; PF04335; VirB8; 1. DR SUPFAM; SSF54427; SSF54427; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 59 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 24 225 VirB8. {ECO:0000259|Pfam:PF04335}. SQ SEQUENCE 252 AA; 29095 MW; 96E175B6FCA95D4D CRC64; MLGKKNEEVL IDENLVGGVI ALDRLAKLNK ANRTFKRAFY LSMALNVAAV TSIVMMMPLK KTDIFVYGID RYTGEFKIVK RSDARQIVNS EAVVDSATSK FVSLLFGYSK NSLRDRKDQL MQYCDVSFQT QAMRMFNENI RQFVDKVRAE AIISSNIQRE KVKNSPLTRL TFFITIKITP DTMENYEYIT KKQVTIYYDF ARGNSSQENL IINPFGFKVF DIQITDLQNE QTVSEILRKI REVESKNKAL NK // ID O25222_HELPY Unreviewed; 367 AA. AC O25222; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 68. DE SubName: Full=Outer membrane protein (Omp12) {ECO:0000313|EMBL:AAD07548.1}; GN OrderedLocusNames=HP_0477 {ECO:0000313|EMBL:AAD07548.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07548.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07548.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07548.1; -; Genomic_DNA. DR RefSeq; NP_207275.1; NC_000915.1. DR RefSeq; WP_001167977.1; NC_018939.1. DR ProteinModelPortal; O25222; -. DR STRING; 85962.HP0477; -. DR PaxDb; O25222; -. DR EnsemblBacteria; AAD07548; AAD07548; HP_0477. DR GeneID; 900005; -. DR KEGG; heo:C694_02445; -. DR KEGG; hpy:HP0477; -. DR PATRIC; 20592225; VBIHelPyl33062_0501. DR OMA; ITNMPKT; -. DR OrthoDB; EOG6ZH2DR; -. DR BioCyc; HPY:HP0477-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 367 AA; 41695 MW; D29F48788648B260 CRC64; MQKALLHSSF FLPLFLSFCI AEENGAYASV GFEYSISHAV EHNNPFLNQE RIQIISNAQN KIYKLHQVKN EITSMPKTFA YINNALKNNS KLTPTEMQAE QYYLQSTFQN IEKIVMLSGG VSSNPQLVQA LEKMQEPITN PLEFEENLRN LEVQFAQSQN RMLSSLSSQI AAISNSLNAL DPNSYSKNIS SMYGVSLSVG YKHFFTKKKN QGLRYYLFYD YGYTNFGFVG NGFDGLGKMN NHLYGLGIDY LYNFIDNAKK HSSVGFYLGF ALAGSSWVGS GLSMWVSQTD FINNYLTGYQ AKMHTSFFQI PLNFGVRVNV NRHNGFEMGL KIPLAMNSFY ETHGKGLNTS LFFKRLVMFN VSYVYSF // ID O25653_HELPY Unreviewed; 186 AA. AC O25653; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Site-specific recombinase {ECO:0000313|EMBL:AAD08059.1}; GN OrderedLocusNames=HP_1009 {ECO:0000313|EMBL:AAD08059.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08059.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08059.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08059.1; -; Genomic_DNA. DR PIR; A64646; A64646. DR ProteinModelPortal; O25653; -. DR STRING; 85962.HP1009; -. DR PaxDb; O25653; -. DR PRIDE; O25653; -. DR EnsemblBacteria; AAD08059; AAD08059; HP_1009. DR PATRIC; 20593347; VBIHelPyl33062_1055. DR eggNOG; COG0582; LUCA. DR OrthoDB; EOG6PZXFP; -. DR BioCyc; HPY:HP1009-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 97 159 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. SQ SEQUENCE 186 AA; 22242 MW; 7C8ECDA4FB2A7A94 CRC64; MYCFYSLTIS ASHLKVKRLR LLNEEMLVNF LFELAKQRKI NSMAKYVMYI RQFFDYLDRT KHYEFYFSLK NIAFAKHKDN LPKHLNSKDL KSFIYTLINY RTRSSYEKRN KCILLLIILG GLRKSEVFNL ELRNIVLEKE HYILLIKGKN NKERKAFIKI AQTDIDTLAP LIRILLESIA KNLLSH // ID O24937_HELPY Unreviewed; 395 AA. AC O24937; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 77. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07189.1}; GN OrderedLocusNames=HP_0118 {ECO:0000313|EMBL:AAD07189.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07189.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07189.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07189.1; -; Genomic_DNA. DR PIR; F64534; F64534. DR RefSeq; NP_206918.1; NC_000915.1. DR RefSeq; WP_000446641.1; NC_018939.1. DR ProteinModelPortal; O24937; -. DR DIP; DIP-3133N; -. DR IntAct; O24937; 3. DR MINT; MINT-183041; -. DR STRING; 85962.HP0118; -. DR PaxDb; O24937; -. DR EnsemblBacteria; AAD07189; AAD07189; HP_0118. DR GeneID; 899123; -. DR KEGG; heo:C694_00585; -. DR KEGG; hpy:HP0118; -. DR PATRIC; 20591451; VBIHelPyl33062_0125. DR OMA; XSTITNI; -. DR OrthoDB; EOG6SJJMS; -. DR BioCyc; HPY:HP0118-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008592; DUF874. DR Pfam; PF05917; DUF874; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 76 99 {ECO:0000256|SAM:Coils}. FT COILED 180 207 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 395 AA; 45136 MW; 993949884229E11F CRC64; MESVKTGKTN KVGKNTEMAN TKANKEXHFK QXSTITNIIR SXXGIFTKIA KKVRGLVKKH PKKSSAALVV LTHIACKKAK ELDDKVQDKS KQAEKENQIN WWKYSGLTIA TSLLLAACST GDVSEQIELE QEKQKTSNIE TNNQIKVEQE KQKTSNIETN NQIKVEQEQQ KTSNTQKDLV KEQKDLVKEQ KDLVKEQKDL VKEQKDLVKT QKDFIKYVEQ NCQENHNQFF IEKGGIKAGI GIEVEAECKT PKPAKTNQTP IQPKHLPNSK QPRSQRGSKA QELIAYLQKE LEFLPYSQKA IAKQVDFYRP SSIAYLELDP RDFKVTEEWQ KENLKIRSKA QAKMLEMRNP QAHLSNSQSL LFVQKIFADV NKEIEAVANT EKKAEKAGYG YSKRM // ID O25976_HELPY Unreviewed; 292 AA. AC O25976; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 89. DE SubName: Full=Protease IV (PspA) {ECO:0000313|EMBL:AAD08477.1}; GN OrderedLocusNames=HP_1435 {ECO:0000313|EMBL:AAD08477.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08477.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08477.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08477.1; -; Genomic_DNA. DR PIR; C64699; C64699. DR RefSeq; NP_208226.1; NC_000915.1. DR RefSeq; WP_000269537.1; NC_018939.1. DR ProteinModelPortal; O25976; -. DR DIP; DIP-3768N; -. DR IntAct; O25976; 2. DR MINT; MINT-175964; -. DR STRING; 85962.HP1435; -. DR PaxDb; O25976; -. DR EnsemblBacteria; AAD08477; AAD08477; HP_1435. DR GeneID; 899860; -. DR KEGG; heo:C694_07430; -. DR KEGG; hpy:HP1435; -. DR PATRIC; 20594273; VBIHelPyl33062_1506. DR eggNOG; ENOG4105D07; Bacteria. DR eggNOG; COG0616; LUCA. DR KO; K04773; -. DR OMA; PLDFITK; -. DR OrthoDB; EOG6P5ZHQ; -. DR BioCyc; HPY:HP1435-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.226.10; -; 2. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR004635; Pept_S49_SppA. DR InterPro; IPR002142; Peptidase_S49. DR Pfam; PF01343; Peptidase_S49; 1. DR SUPFAM; SSF52096; SSF52096; 2. DR TIGRFAMs; TIGR00706; SppA_dom; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD08477.1}; KW Protease {ECO:0000313|EMBL:AAD08477.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 104 256 Peptidase_S49. FT {ECO:0000259|Pfam:PF01343}. SQ SEQUENCE 292 AA; 32425 MW; 08F63263DEE2D520 CRC64; MWSFIQKIFK ALIIAPLDFI TKYFKSFVLL LIVLVFFSAK ESAPSAPPNL AKLYLNGAIF STEDFDKEVD KILKTPSIKG VLLLIDSPGG AVSASVELSE KIADLKQKMP VLAYARGVMA SGSYYAGMQA SEVYASKASL IGSIGVIFSG ANVENLLNKV GVATQGVHAG EYKEIGTFTR AWKPNEKDFL QNLVNEQYQM FVNDVAKARK LDAKDYKDFA EGKVFSAQKA LKLKLIDKIS TIKQAQDRLM ELSKVKKAYW LEKSPMERFI EKATQSATNI ITQAFGYQLL MR // ID O25420_HELPY Unreviewed; 210 AA. AC O25420; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 86. DE SubName: Full=Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AAD07771.1}; GN OrderedLocusNames=HP_0718 {ECO:0000313|EMBL:AAD07771.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07771.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07771.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07771.1; -; Genomic_DNA. DR PIR; F64609; F64609. DR RefSeq; NP_207512.1; NC_000915.1. DR RefSeq; WP_000498401.1; NC_018939.1. DR ProteinModelPortal; O25420; -. DR STRING; 85962.HP0718; -. DR PaxDb; O25420; -. DR EnsemblBacteria; AAD07771; AAD07771; HP_0718. DR GeneID; 899321; -. DR KEGG; heo:C694_03695; -. DR KEGG; hpy:HP0718; -. DR PATRIC; 20592723; VBIHelPyl33062_0750. DR eggNOG; ENOG4108ZUB; Bacteria. DR eggNOG; COG1279; LUCA. DR KO; K06895; -. DR OMA; EHVFAVC; -. DR OrthoDB; EOG6CS048; -. DR BioCyc; HPY:HP0718-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR GO; GO:0006865; P:amino acid transport; IEA:InterPro. DR InterPro; IPR001123; LysE-type. DR PANTHER; PTHR30086; PTHR30086; 1. DR Pfam; PF01810; LysE; 1. PE 4: Predicted; KW Cell membrane {ECO:0000256|SAAS:SAAS00482674}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAAS:SAAS00482674, KW ECO:0000256|SAAS:SAAS00482702, ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAAS:SAAS00482702, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00482702, KW ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 34 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 74 92 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 140 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 146 168 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 180 200 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 210 AA; 23143 MW; BD53F199B440C2C1 CRC64; MFVVFIEGFG LAISLCAAVG AQSLFIVERG MARNYVFLIC ALCFMCDIVL MSMGVFGVGA YFAKNLYLSL SLNLFGALFT GFYAFLALKT LFQTFKKKQV QTPKKLSLKK TLLFTLGVTL LNPQVYLEMV FLIGASALSF NLAQKFVFLA GTLSAALSWL LLLCTLSLRY GSKLLNNQKI FMGVNLFVTA IMGTLSVTLF RDFLALLSKT // ID O25605_HELPY Unreviewed; 205 AA. AC O25605; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08006.1}; GN OrderedLocusNames=HP_0951 {ECO:0000313|EMBL:AAD08006.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08006.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08006.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08006.1; -; Genomic_DNA. DR PIR; G64638; G64638. DR RefSeq; NP_207743.1; NC_000915.1. DR RefSeq; WP_010875567.1; NC_000915.1. DR ProteinModelPortal; O25605; -. DR DIP; DIP-3323N; -. DR IntAct; O25605; 7. DR MINT; MINT-162381; -. DR STRING; 85962.HP0951; -. DR PaxDb; O25605; -. DR PRIDE; O25605; -. DR DNASU; 899484; -. DR EnsemblBacteria; AAD08006; AAD08006; HP_0951. DR GeneID; 899484; -. DR KEGG; hpy:HP0951; -. DR PATRIC; 20593215; VBIHelPyl33062_0989. DR eggNOG; ENOG4108SDW; Bacteria. DR eggNOG; ENOG4111G2E; LUCA. DR OMA; FYGARHS; -. DR OrthoDB; EOG65BDJM; -. DR BioCyc; HPY:HP0951-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR022572; DNA_rep/recomb_RecO_N. DR Pfam; PF13114; RecO_N_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 2 72 DNA_rep/recomb_RecO_N. FT {ECO:0000259|Pfam:PF13114}. SQ SEQUENCE 205 AA; 24228 MW; 95D3BB434A957BCC CRC64; MMQGFLLQTQ SIRDEDLIVR VLTKNQLKTL YRFYGKRHSV LNVGRKIDFE EENDDKFLPK LRNILHLGYI WEREMERLFF WQRFCALLFR HLEGVHSLDS VYFDTLDDGA NKLAKQHPLR VILEMYATLL NFEGRLQSYN SCFLCDAKLE RSVALAQGFI LAHPSCLKAK SLNLEKIQAF FRTQSTIDLE TEEVEELWRT LNLGF // ID O25607_HELPY Unreviewed; 188 AA. AC O25607; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08007.1}; GN OrderedLocusNames=HP_0953 {ECO:0000313|EMBL:AAD08007.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08007.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08007.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08007.1; -; Genomic_DNA. DR PIR; A64639; A64639. DR RefSeq; NP_207745.1; NC_000915.1. DR RefSeq; WP_000476691.1; NC_018939.1. DR ProteinModelPortal; O25607; -. DR STRING; 85962.HP0953; -. DR PaxDb; O25607; -. DR EnsemblBacteria; AAD08007; AAD08007; HP_0953. DR GeneID; 899486; -. DR KEGG; heo:C694_04910; -. DR KEGG; hpy:HP0953; -. DR PATRIC; 20593219; VBIHelPyl33062_0991. DR OMA; APAWVFE; -. DR OrthoDB; EOG6F55FR; -. DR BioCyc; HPY:HP0953-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 188 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157809. SQ SEQUENCE 188 AA; 21222 MW; 3E2065F02BF39406 CRC64; MFKRMVLIAL LGVFSSVSLS AKSLLRDDGI LVSDLKGMKS ELSDAPAWVF EDAKAPYEEM GVAYIPVNNK YLGIEQATLN AKLSLIVVFH EIMMKYKKRF MEQFHESEQT TTNISYAIYN YLATKIQVSN TYTNLKSEVA VVKIKLVGCQ IEQIKRYLKA SVENLNDNEI AYIAKVAQKE FGSVCALR // ID O25619_HELPY Unreviewed; 549 AA. AC O25619; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 69. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08010.1}; GN OrderedLocusNames=HP_0966 {ECO:0000313|EMBL:AAD08010.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08010.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08010.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08010.1; -; Genomic_DNA. DR PIR; F64640; F64640. DR RefSeq; NP_207758.1; NC_000915.1. DR RefSeq; WP_010875570.1; NC_000915.1. DR ProteinModelPortal; O25619; -. DR STRING; 85962.HP0966; -. DR PaxDb; O25619; -. DR PRIDE; O25619; -. DR EnsemblBacteria; AAD08010; AAD08010; HP_0966. DR GeneID; 899499; -. DR KEGG; hpy:HP0966; -. DR PATRIC; 20593245; VBIHelPyl33062_1004. DR eggNOG; ENOG41060SJ; Bacteria. DR eggNOG; COG0699; LUCA. DR OMA; IMQQSLI; -. DR OrthoDB; EOG6PCPSX; -. DR BioCyc; HPY:HP0966-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR022812; Dynamin_SF. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00350; Dynamin_N; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 285 319 {ECO:0000256|SAM:Coils}. FT COILED 495 543 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 549 AA; 62577 MW; 1289C2DAD83ADCAC CRC64; MMVLRTQTNF VEFLEQVLEV LKEVEIDKTE CSTLLASVQK QQLVIPVVGN FSAGKSTLLN RFLGSSVLPT GITPETSLAT ELHYSAKERI EAFSNNDEKT ESFELNEQSF EAIKENATKY SYLKVYLNNE ALKNSAPLVF VDMPGFDSPI SSHTHAILEY LERGVHFVIL TSVEEGNLTK RMVRELKNLL EFDKGLSFIL SKTNLRTPSQ VGEISHYIQD QIQDHLDLTT HLIHSNKDNN ALLEVADKID AEKLFSALYL KRLKFLNSKL QNSLKSVMES FDYSKEKALE EIQALDLGVK DIEKTYEKLR ANLEEEYSSV AVGSVVKKVV EEVRDQKSYL ASLINKPNEF NSEIESIMQQ SLIKNAKLEI EKINLSFSKD FHAEFESLNK LSSDLSVNLE HGIELGINAL SVIFSKNPVT RPFALILQGL KSLLKDLLTL LPNIIASFFR NEEKERAKLE NLIEVRVIPE IQYKLKKVLP GLFNEALQNS LKSLKDRCEL EITHKKQEIA LAQKEKEKHL NDLEDQKQIL ENKINALSDL EQQYLKDQQ // ID O25840_HELPY Unreviewed; 733 AA. AC O25840; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Outer membrane protein (Omp28) {ECO:0000313|EMBL:AAD08288.1}; GN OrderedLocusNames=HP_1243 {ECO:0000313|EMBL:AAD08288.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08288.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08288.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08288.1; -; Genomic_DNA. DR PIR; C64675; C64675. DR RefSeq; NP_208035.1; NC_000915.1. DR RefSeq; WP_000716249.1; NC_018939.1. DR ProteinModelPortal; O25840; -. DR DIP; DIP-3558N; -. DR IntAct; O25840; 3. DR MINT; MINT-170550; -. DR STRING; 85962.HP1243; -. DR PaxDb; O25840; -. DR EnsemblBacteria; AAD08288; AAD08288; HP_1243. DR GeneID; 898891; -. DR KEGG; heo:C694_06420; -. DR KEGG; hpy:HP1243; -. DR PATRIC; 20593861; VBIHelPyl33062_1301. DR KO; K15847; -. DR OMA; PMSIENF; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP1243-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 733 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157815. SQ SEQUENCE 733 AA; 79128 MW; 16C70F4EB727311D CRC64; MKKHILSLAL GSLLVSTLSA EDDGFYTSVG YQIGEAAQMV TNTKGIQQLS DNYENLNNLL TRYSTLNTLI KLSADPSAIN AVRENLGASA KNLIGDKANS PAYQAVLLAI NAAVGFWNVV GYVTQCGGNA NGQESTSSTT IFNNEPGYRS TSITCSLNGH KPGYYGPMSI ENFKKLNEAY QILQTALKNG LPALKENNGK VSVTYTYTCS GQGNNNCSPS VNGTKTTTQT IDGKSVTTTI SSKVVGSIAS GNTSHVITNK LDGVPDSAQA LLAQASTLIN TINEACPYFH ATNSSEANAP KFSTTTGKIC GAFSEEISAI QKMITDAQEL VNQTSVINSN EQSTPVGNNN GKPFNPFTDA SFAQGMLANA SAQAKMLNLA HQVGQAINPE NLSENFKNFV TGFLATCNNK STAGTGGTQG SAPGTVTTQT FASGCAYVEQ TLTNLGNSIA HFGTQEQQIQ QAENIADTLV NFKSRYSELG NTYNSITTAL SKVPNAQSLQ NVVSKKNNPY SPQGIETNYY LNQNSYNQIQ TINQELGRNP FRKVGIVNSQ TNNGAMNGIG IQVGYKQFFG QKRKWGARYY GFFDYNHAFI KSSFFNSASD VWTYGFGADA LYNFINDKAT NFLGKNNKLS LGLFGGIALA GTSWLNSEYV NLATVNNVYN AKMNVANFQF LFNMGVRMNL ARSKKKGSDH AAQHGIELGL KIPTINTNYY SFMGAELKYR RLYSVYLNYV FAY // ID O25289_HELPY Unreviewed; 215 AA. AC O25289; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07629.1}; GN OrderedLocusNames=HP_0565 {ECO:0000313|EMBL:AAD07629.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07629.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07629.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07629.1; -; Genomic_DNA. DR PIR; E64590; E64590. DR RefSeq; NP_207360.1; NC_000915.1. DR RefSeq; WP_001148303.1; NC_018939.1. DR ProteinModelPortal; O25289; -. DR STRING; 85962.HP0565; -. DR PaxDb; O25289; -. DR EnsemblBacteria; AAD07629; AAD07629; HP_0565. DR GeneID; 900039; -. DR KEGG; heo:C694_02915; -. DR KEGG; hpy:HP0565; -. DR PATRIC; 20592403; VBIHelPyl33062_0590. DR eggNOG; COG3059; LUCA. DR OMA; TTPEVYV; -. DR OrthoDB; EOG6DG2XJ; -. DR BioCyc; HPY:HP0565-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR007339; DUF417. DR Pfam; PF04224; DUF417; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 129 148 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 215 AA; 23921 MW; 7D5AC26A34A00BD2 CRC64; MQALKSLLEV ITKLQNLGGY LMHIAIFIIF IWIGGLKFVP YEAEGIAPFV ANSPFFSFMY KFEKPAYKQH KMSESQSMQE EMQDNPKIVE NKEWHKENRT YLVAEALGIT IMILGILVLL GLWMPLMGVI GGLLVAGMTI TTLSFLFTTP EVFVNQHFPW LSGAGRLVVK DLALFAGGLF VAGFDAKRYL EGKGFCLMDR SSVGIKTKCS SGCCS // ID O25212_HELPY Unreviewed; 631 AA. AC O25212; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07527.1}; GN OrderedLocusNames=HP_0465 {ECO:0000313|EMBL:AAD07527.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07527.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07527.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07527.1; -; Genomic_DNA. DR PIR; A64578; A64578. DR RefSeq; NP_207263.1; NC_000915.1. DR RefSeq; WP_001116307.1; NC_018939.1. DR ProteinModelPortal; O25212; -. DR STRING; 85962.HP0465; -. DR PaxDb; O25212; -. DR DNASU; 900064; -. DR EnsemblBacteria; AAD07527; AAD07527; HP_0465. DR GeneID; 900064; -. DR KEGG; heo:C694_02385; -. DR KEGG; hpy:HP0465; -. DR PATRIC; 20592201; VBIHelPyl33062_0489. DR eggNOG; ENOG4107T1F; Bacteria. DR eggNOG; COG2604; LUCA. DR OMA; CVVGNGP; -. DR OrthoDB; EOG6SJJF3; -. DR BioCyc; HPY:HP0465-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002826; MptE-like. DR Pfam; PF01973; MAF_flag10; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 631 AA; 72172 MW; 81380B27F060870B CRC64; MPFLKALESF DAPFLEKEIS KRFRDNLVFF KSYNPNLFNA LNTPFKNYQL LFEKNHFNLL HTPTNALSYP KNQMIEIAFN MASNPLNNPK WSLDNNHLSL HYLKSQNNPK LPLTLKATHA ISNFLNNHQT PCSLKKFLPP TMIYGVLDGL FLAILQAQNY RFHSLYLFEE NLDLFKISCY FVRYEDLITK GAKLFIQGFF NPNELKMDFL KRPVTHSFLK LEIMPYKSAF NLRMRENIQS YYKQALRGWG SFEDELLGLK NTLKNLPLYQ TLKIKPKKIN APICVVGNGP SLDLLLDFLK ENEKNCIIFS CGTALKPLKT HGVKVDFQIE VERIDYLKEV LENAPLEDTP LMGANMLNPN AFNVAKEALM FMRGGSACAY ISPLSIEYAA PLVGNAGVAL AGLMSDEIYL CALDCAYIKG FKKHAQNSYY GDEKEIDTSS LISVEGNFKG YETFSDSLFL LSKERIEEAL NHYQPKKVYN LSYGAKIKHA VSLNYSQVKL KHSNKQEAIA RIKSMFNPPN NHAKDLKNLQ KNLMNFKESF FTHLNTPCKT KQEIFEWVDS LSGFCQTISA KTPTIGILFE GSVAHILQSV LIVSLHLNEN ELTHFIKFSQ NALKQFLKEA CLLLQMQLKQ P // ID O24961_HELPY Unreviewed; 196 AA. AC O24961; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 76. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07224.1}; GN OrderedLocusNames=HP_0150 {ECO:0000313|EMBL:AAD07224.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07224.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07224.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07224.1; -; Genomic_DNA. DR PIR; F64538; F64538. DR RefSeq; NP_206949.1; NC_000915.1. DR RefSeq; WP_000660370.1; NC_018939.1. DR ProteinModelPortal; O24961; -. DR DIP; DIP-3253N; -. DR IntAct; O24961; 6. DR MINT; MINT-162752; -. DR STRING; 85962.HP0150; -. DR PaxDb; O24961; -. DR EnsemblBacteria; AAD07224; AAD07224; HP_0150. DR GeneID; 900288; -. DR KEGG; heo:C694_00750; -. DR KEGG; hpy:HP0150; -. DR PATRIC; 20591521; VBIHelPyl33062_0160. DR OMA; CEPLKFD; -. DR OrthoDB; EOG6GN71S; -. DR BioCyc; HPY:HP0150-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 30 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 196 AA; 22652 MW; 82392BA7FE540F7C CRC64; MKEKNFWPLG IMSVLILGLG IVVFLVVFAL KNSPKNDLVY FKGHNEVDLN FNAMLKTYEN FKSNYRFLVG LKPLIKSPKT PILPYFSKGT HGDKKLQENL LNNALILEKS NTLYAQLQPL KPALDSPNIQ VYLAFYPSPS QPRWLGTLDC KNACEPLKFD LLESDKMGRY KILFKFVFKN KEELILEQLA FFKQRI // ID O24864_HELPY Unreviewed; 321 AA. AC O24864; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 106. DE SubName: Full=Chemotaxis protein (CheV) {ECO:0000313|EMBL:AAD07087.1}; GN OrderedLocusNames=HP_0019 {ECO:0000313|EMBL:AAD07087.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07087.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07087.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07087.1; -; Genomic_DNA. DR PIR; C64522; C64522. DR RefSeq; NP_206821.1; NC_000915.1. DR RefSeq; WP_000785454.1; NC_018939.1. DR ProteinModelPortal; O24864; -. DR DIP; DIP-3650N; -. DR IntAct; O24864; 3. DR MINT; MINT-164782; -. DR STRING; 85962.HP0019; -. DR PaxDb; O24864; -. DR EnsemblBacteria; AAD07087; AAD07087; HP_0019. DR GeneID; 899100; -. DR KEGG; heo:C694_00090; -. DR KEGG; hpy:HP0019; -. DR PATRIC; 20591231; VBIHelPyl33062_0017. DR eggNOG; ENOG4105D4E; Bacteria. DR eggNOG; COG0784; LUCA. DR eggNOG; COG0835; LUCA. DR KO; K03415; -. DR OMA; GSFNDAM; -. DR OrthoDB; EOG6716JW; -. DR BioCyc; HPY:HP0019-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0006935; P:chemotaxis; IEA:InterPro. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR024181; Chemotax_regulator_CheV. DR InterPro; IPR002545; CheW. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF01584; CheW; 1. DR Pfam; PF00072; Response_reg; 1. DR PIRSF; PIRSF002867; CheV; 1. DR SMART; SM00260; CheW; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF50341; SSF50341; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50851; CHEW; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 19 177 CheW-like. {ECO:0000259|PROSITE:PS50851}. FT DOMAIN 198 319 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 321 AA; 36587 MW; A0070CE9DF623953 CRC64; MADSLAGIDQ VTSLHKNNEL QLLCFRLGKN KDLYAVNVFK IREVVKYHGN LTIISHENNS LVEGLIIIRE LTIPLIDMKK WFYYDSQNKN KDLRPYRIEK EKGEDDIVMI CEFSRWTIGV RIYEADRILS KKWTEMEQSA GLGGSAGNNK LVSRTRYFDG RLVQVVDIEK MLIDVFPWIE DEKHNDLETL SKIHSNQCVL LADDSPSVLK TMQMILDKLG VKHIDFINGK TLLEHLFNPT TDVSNIGLII TDLEMPEASG FEVIKQVKNN PLTSKIPIVV NSSMSGSSNE DMARSLKADD FISKSNPKDI QRVVKQFLEL A // ID O26034_HELPY Unreviewed; 238 AA. AC O26034; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 98. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08540.1}; GN OrderedLocusNames=HP_1504 {ECO:0000313|EMBL:AAD08540.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08540.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08540.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08540.1; -; Genomic_DNA. DR PIR; H64707; H64707. DR RefSeq; NP_208295.1; NC_000915.1. DR RefSeq; WP_000375247.1; NC_018939.1. DR ProteinModelPortal; O26034; -. DR IntAct; O26034; 4. DR STRING; 85962.HP1504; -. DR PaxDb; O26034; -. DR DNASU; 899787; -. DR EnsemblBacteria; AAD08540; AAD08540; HP_1504. DR GeneID; 899787; -. DR KEGG; heo:C694_07790; -. DR KEGG; hpy:HP1504; -. DR PATRIC; 20594423; VBIHelPyl33062_1580. DR eggNOG; ENOG4107YVB; Bacteria. DR eggNOG; COG4123; LUCA. DR OMA; DSKMAFC; -. DR OrthoDB; EOG6G20PN; -. DR BioCyc; HPY:HP1504-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR007848; Small_mtfrase_dom. DR Pfam; PF05175; MTS; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 34 119 MTS. {ECO:0000259|Pfam:PF05175}. SQ SEQUENCE 238 AA; 26688 MW; C31A7F416A834900 CRC64; MDRKLLRLYQ PLNAYSYNSD SLFLYDFSRP FIKNSGAILD IGSGCGILGL LCARDNPLAI VHLVEKDNKM AFCSQKNALK FPNAQVFEGD FLDFNPPILY DIIVCNPPFY ALGSIKSKIK GHARHQSELD FASLVAKVKK CLKPKGYFIF CYEALSLCLV IEGLKSVKLT LETLRFVQSF KDKNAHLMLG AARNNSKSAL KVLPPLITHH SKNQSDNTKE VLSIYQTCNT YSIKALLN // ID O25974_HELPY Unreviewed; 856 AA. AC O25974; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08475.1}; GN OrderedLocusNames=HP_1433 {ECO:0000313|EMBL:AAD08475.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08475.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08475.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08475.1; -; Genomic_DNA. DR PIR; A64699; A64699. DR RefSeq; NP_208224.1; NC_000915.1. DR RefSeq; WP_010875629.1; NC_000915.1. DR ProteinModelPortal; O25974; -. DR DIP; DIP-3743N; -. DR IntAct; O25974; 1. DR MINT; MINT-179794; -. DR STRING; 85962.HP1433; -. DR PaxDb; O25974; -. DR PRIDE; O25974; -. DR EnsemblBacteria; AAD08475; AAD08475; HP_1433. DR GeneID; 899862; -. DR KEGG; hpy:HP1433; -. DR PATRIC; 20594269; VBIHelPyl33062_1504. DR OMA; NNFVHVY; -. DR OrthoDB; EOG6WHNM3; -. DR BioCyc; HPY:HP1433-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 856 AA; 99279 MW; 811FC430B835F104 CRC64; MLSYKHSNAT LPILWGEAKR GDFDDLDKAF TQLLLTIGKH RLYTHHTPPY LCAFNAFKME FIAFDDTITS FFYKSDIDFS ITPSNHNTEG FKHALDAFKA MSKSHKFVFD FKTQSQECKE FIKNRLNSSH LLSKIQIDKN NFFTIYQKWL EIVKPTIDIN WEVAKTKDIL DADYYLADLL SDGDKTIIEK LHTILRSSHY KLNRGVNELG KMDFMEVGFT DSQQAHQEFW SVYERPPKRE FQASILERRD LLVPSDVRER KGAFFTPKIW VEKSQEYLAK ALGQDYQEDC IIWDCAGGTG NLLRGLLNKA NLYLSTLDHN DVAIVKDLAA KNHLKLLENH VFQFDFLNDD FFSDKTPKSL QEILKDKEKR KKLIIYINPP YAEAGNKSKM SGTGEHKAKV ARDNLICEKY KNELGKANNE VFAQFFMRIY KELNGVILAS FSTLKNLQGS NFKKFREIFK AKFLEGFMVP ADTFDNVRGQ FPIGFLVWDT SSILPKENPL NLGGNSKEEK QNSNLILDQD NLKDNPLKER FCLLDINAPN RKMCSQSRTR TKGTQKHSTA APFETPLHTV SLEIFDSFGG FLGSKKIYTH TIDKMLTLAD YLQKFQPTKR DTIFGYLDPG RNSFQHQNLI HISIIDKSKQ SHVKYFPIIA TTILLVSVFF SIRHCIKATW QNDRDQFYAP YDDAFQDDSE FKNNCLIFML FHTQNRITTA QGTNHFIPFS ETEVNAKERY SSHALLEFLK GEIKELKEND SLFLSAKKEN KPLKFSPSAS KVFDASREVY RYYHTQDFTN RPYNANASLY DIKEFFQGRN KQGKLNLPAK AKDEYYKQLY ANLQDALKDL AKEIQPKVYE YGFLRE // ID O25517_HELPY Unreviewed; 866 AA. AC O25517; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 103. DE SubName: Full=Type I restriction enzyme R protein (HsdR) {ECO:0000313|EMBL:AAD07892.1}; GN OrderedLocusNames=HP_0846 {ECO:0000313|EMBL:AAD07892.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07892.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07892.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07892.1; -; Genomic_DNA. DR PIR; F64625; F64625. DR RefSeq; NP_207639.1; NC_000915.1. DR RefSeq; WP_001196035.1; NC_000915.1. DR ProteinModelPortal; O25517; -. DR DIP; DIP-3594N; -. DR IntAct; O25517; 1. DR MINT; MINT-178008; -. DR STRING; 85962.HP0846; -. DR REBASE; 56838; Hpy26695ORF4355P. DR PaxDb; O25517; -. DR EnsemblBacteria; AAD07892; AAD07892; HP_0846. DR GeneID; 899375; -. DR KEGG; heo:C694_04335; -. DR KEGG; hpy:HP0846; -. DR PATRIC; 20592985; VBIHelPyl33062_0880. DR eggNOG; ENOG4105DZR; Bacteria. DR eggNOG; COG0610; LUCA. DR KO; K01153; -. DR OMA; NFKQKTH; -. DR OrthoDB; EOG6JTCB4; -. DR BioCyc; HPY:HP0846-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009035; F:Type I site-specific deoxyribonuclease activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR007409; Restrct_endonuc_type1_HsdR_N. DR InterPro; IPR004473; Restrct_endonuc_typeI_HsdR. DR InterPro; IPR022625; TypeI_RM_Rsu_C. DR Pfam; PF12008; EcoR124_C; 1. DR Pfam; PF04313; HSDR_N; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00348; hsdR; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 167 329 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. SQ SEQUENCE 866 AA; 100947 MW; 43661C011A19EECD CRC64; MQVIHQYSNK GGKYQNRYDV SILVNGLPLV HVELKKRGVA IREAFNQIKR YKRDSFSAED GLFDFVQIFV ISNGTSSKYY SNTTRIAQLE KNHKADTFEF TNYWADSKNH NIEDLMDFAK AFFAKRSLLN VLTCYCVFTS EEVLLVMRPY QIVAAERILE KIKTAQNSKT KNQSKGYIWH TTGSGKTLTS FKSATLAKEL ESVSKVLFVV DRKDLDYQTM KEYDKFQKDC ANSNTSTKIL KEQLEDSNAK IIITTIQKLD KFVKSHKGHA IFNEEVVMIF DECHRSQLGS MHQAITKAFK KYHLFGFTGT PIFAANCDKN NPLGTTEQKF GKCLHQYTII DAIRDKNVLP FRVEYHNTIK AKEDIKDNKV RAVDEKNALL DTRRIKEITK CILERFNQAT KNKKFNSILA CSSIEALKKY YQAFKEEKHD LKIAAIFSYS ANEEIDTLED ENNESACRLD KSSRDFLEGA IADYNGMFGV SFDTSDQKFQ SYYKDLSQKM KERKIDLLMV VNMFLTGFDA TRLNTLWVDK NLKYHGLIQA FSRANRILDS VKTHGNIVCF RDLEQDLNDA LMLFGNKDAQ SIALLRKYED YLKGYTDNNK EYEGYEGLIK RLLTEFPLKE PIVSESQKKD FIKLFGKILK LENILNSFEN FKKDDYINPR DFQDYQSKYL DFYDAMRSEK GKDKEEINDD LIFEIELIKQ VEVNIDYILN LIEEFAKEHG VEIQGVKTKI EPIINSSIEL RNKKDLIMDF IDKYNKDQEV HAHFQDYIHQ KREEEFQNII EENRLNEEKA YSFMQHAFKG GEISFSGTEF PKIIEEKPSM FGKNSRYQEV KEKVAASLSR FFHRFCDLTS AIFKKNEVKK DEVNEK // ID O25052_HELPY Unreviewed; 430 AA. AC O25052; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 83. DE SubName: Full=ATP-dependent nuclease (AddB) {ECO:0000313|EMBL:AAD07339.1}; GN OrderedLocusNames=HP_0275 {ECO:0000313|EMBL:AAD07339.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07339.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07339.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07339.1; -; Genomic_DNA. DR PIR; C64554; C64554. DR RefSeq; NP_207073.1; NC_000915.1. DR RefSeq; WP_001025475.1; NC_018939.1. DR ProteinModelPortal; O25052; -. DR DIP; DIP-3562N; -. DR IntAct; O25052; 2. DR MINT; MINT-168047; -. DR STRING; 85962.HP0275; -. DR PaxDb; O25052; -. DR EnsemblBacteria; AAD07339; AAD07339; HP_0275. DR GeneID; 900115; -. DR KEGG; heo:C694_01390; -. DR KEGG; hpy:HP0275; -. DR PATRIC; 20591777; VBIHelPyl33062_0286. DR eggNOG; ENOG4107Z0M; Bacteria. DR eggNOG; COG0457; LUCA. DR OMA; GYLLIDH; -. DR OrthoDB; EOG67DPH0; -. DR BioCyc; HPY:HP0275-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR002885; Pentatricopeptide_repeat. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF01535; PPR; 1. DR TIGRFAMs; TIGR00756; PPR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 430 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157705. SQ SEQUENCE 430 AA; 49685 MW; E702669D4297A52C CRC64; MNIQIKKRFL ANLLLFSLFC LKAETLSEDH QILLSSDAFH RGDFAAAQKG YMNLYKQTNK VVYAKEAAIS AASLGDIKTA MHLAMLYQKI TNNRNDVSIN KILVDGYAQM GQIDKAIELL HKIRKEEKTI ATDNVLGTLY LTQKRLDKAF PLLNKFYNQV HDEDSLEKLI TIYFLQNRKK EGLDLLQSHI DRYGCSEQLC QKALNTFTQF NELDLAKTTF ARLYEKNPIV QNAQFYIGVL ILLKEFDKAQ KIAELFPFDR RLLLDLYTAQ KKFDQASKQA SLIYQEKKDP KFLGLEAIYH YESLSANKKK LTKEEMLPII QKLEQATKER QAWLAKTKDK EDAQDAFFYN FLGYSLIDYD MDIKRGMDFV RKALALDSGS VLYLDSLAWG YYKLGNCLEA KKIFSSIAKE SIQAEPELKE HNKIIQECKK // ID O25697_HELPY Unreviewed; 240 AA. AC O25697; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08109.1}; GN OrderedLocusNames=HP_1057 {ECO:0000313|EMBL:AAD08109.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08109.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08109.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08109.1; -; Genomic_DNA. DR PIR; A64652; A64652. DR RefSeq; NP_207848.1; NC_000915.1. DR RefSeq; WP_001862785.1; NC_018939.1. DR ProteinModelPortal; O25697; -. DR STRING; 85962.HP1057; -. DR PaxDb; O25697; -. DR EnsemblBacteria; AAD08109; AAD08109; HP_1057. DR GeneID; 899592; -. DR KEGG; heo:C694_05465; -. DR KEGG; hpy:HP1057; -. DR PATRIC; 20593451; VBIHelPyl33062_1106. DR OMA; ANIGYQY; -. DR OrthoDB; EOG69D3C4; -. DR BioCyc; HPY:HP1057-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 240 AA; 27390 MW; F67ACEC302B80B8D CRC64; MGLKKYAILW SLMGFYAGLN ALDYDTIDPK YYKYIKYYKA YEDKEVEELI RDLKRANAKS GLILGINTGF FYNHEIMVRT NSSSITGNIL NYLFAYGLRF GYQTFRPSFF ARLVKPNIIG RRIYIQYYGG APKKAGFGDV GFQSVMLNGD FLLDFPLPFV GKYLYMGGYM GLGLGVVAHG VNYTAEWGMS FNAGLALTVL EKNRIEFGFK ILNNFPFLQS NSSKETWWGA MANIGYQYVF // ID O24893_HELPY Unreviewed; 330 AA. AC O24893; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07127.1}; GN OrderedLocusNames=HP_0052 {ECO:0000313|EMBL:AAD07127.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07127.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07127.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07127.1; -; Genomic_DNA. DR PIR; D64526; D64526. DR ProteinModelPortal; O24893; -. DR DIP; DIP-3588N; -. DR IntAct; O24893; 1. DR MINT; MINT-176363; -. DR STRING; 85962.HP0052; -. DR REBASE; 4680; HpyAVIP. DR PaxDb; O24893; -. DR PRIDE; O24893; -. DR EnsemblBacteria; AAD07127; AAD07127; HP_0052. DR PATRIC; 20591305; VBIHelPyl33062_0054. DR OMA; FHSPLEF; -. DR OrthoDB; EOG68SVVN; -. DR BioCyc; HPY:HP0052-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 330 AA; 39245 MW; E275EC035ED0B845 CRC64; MLLSRFQIKN GCIYGVCSYK ASKSVYGYEE SKAQVLNALN TLSVHPIWQS NQESVTKIKG TFVFILENDL HLDENSFYKK LLNSLIDNDF FNRSHSMTPN QKRFLSGFFE SRGSIDTQRN FLTLDYFFHS PLEFKKFHYL IDFFNIPSEA LNFNFRELQP EYAQGINQRN AQFRIYLDWY LHHIGLFNPY KARIAEHVFK TTLAHDGIYY KLNYPPTTKY HGNSFTECAH FYLKNIYQQD LDDKSIEKLR EQLGFIQKSE EFRRDSKIIN LYRLSTPNVC SACCDDYDIK ERSFLSLPLY QITQNPDSYY TEIHDFFRQN QRIRCFSKSC // ID O25791_HELPY Unreviewed; 641 AA. AC O25791; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Outer membrane protein (Omp27) {ECO:0000313|EMBL:AAD08221.1}; GN OrderedLocusNames=HP_1177 {ECO:0000313|EMBL:AAD08221.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08221.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08221.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08221.1; -; Genomic_DNA. DR PIR; A64667; A64667. DR RefSeq; NP_207968.1; NC_000915.1. DR RefSeq; WP_000751514.1; NC_018939.1. DR ProteinModelPortal; O25791; -. DR DIP; DIP-3292N; -. DR IntAct; O25791; 2. DR MINT; MINT-188036; -. DR STRING; 85962.HP1177; -. DR PaxDb; O25791; -. DR EnsemblBacteria; AAD08221; AAD08221; HP_1177. DR GeneID; 899937; -. DR KEGG; heo:C694_06080; -. DR KEGG; hpy:HP1177; -. DR PATRIC; 20593705; VBIHelPyl33062_1231. DR OMA; TLKDYCP; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP1177-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 641 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157928. SQ SEQUENCE 641 AA; 69692 MW; 86F8C4FB7E8319DC CRC64; MKKTKKTILL SLTLAASLLH AEDNGVFLSV GYQIGEAVQK VKNADKVQKL SDTYEQLSRL LTNDNGTNSK TSAQAINQAV NNLNERAKTL AGGTTNSPAY QATLLALRSV LGLWNSMGYA VICGGYTKSP GENNQKDFHY TDENGNGTTI NCGGSTNSNG THSSSGTNTL KADKNVSLSI EQYEKIHEAY QILSKALKQA GLAPLNSKGE KLEAHVTTSK PENNSQTKTT TSVIDTTNDA QNLLTQAQTI VNTLKDYCPM LIAKSSSESS GAATTNAPSW QTAGGGKNSC ATFGAEFSAA SDMINNAQKI VQETQQLSAN QPKNITQPHN LNLNTPSSLT ALAQKMLKNA QSQAEILKLA NQVESDFNKL SSGHLKDYIG KCDASAISSA NMTMQNQKNN WGNGCAGVEE TLSSLKTSAA DFNNQTPQIN QAQNLANTLI QELGNNPFRN MGMIASSTTN NGALNGLGVQ VGYKQFFGEK KRWGLRYYGF FDYNHAYIKS NFFNSASDVW TYGVGSDLLF NFINDKNTNF LGKNNKISVG FFGGIALAGT SWLNSQFVNL KTISNVYSAK VNTANFQFLF NLGLRTNLAR PKKKDSHHAA QHGMELGVKI PTINTNYYSF LDTKLEYRRL YSVYLNYVFA Y // ID O25355_HELPY Unreviewed; 305 AA. AC O25355; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 71. DE SubName: Full=Outer membrane protein (Omp13) {ECO:0000313|EMBL:AAD07715.1}; GN OrderedLocusNames=HP_0638 {ECO:0000313|EMBL:AAD07715.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07715.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07715.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07715.1; -; Genomic_DNA. DR PIR; F64599; F64599. DR RefSeq; NP_207432.1; NC_000915.1. DR RefSeq; WP_000709741.1; NC_018939.1. DR ProteinModelPortal; O25355; -. DR STRING; 85962.HP0638; -. DR PaxDb; O25355; -. DR EnsemblBacteria; AAD07715; AAD07715; HP_0638. DR GeneID; 899299; -. DR KEGG; heo:C694_03300; -. DR KEGG; hpy:HP0638; -. DR PATRIC; 20592561; VBIHelPyl33062_0669. DR OMA; RHVFRKS; -. DR OrthoDB; EOG679T7B; -. DR BioCyc; HPY:HP0638-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 305 AA; 34187 MW; A933BFABB4763912 CRC64; MKKALLLTLS LSFWLHAERN GFYLGLNFLE GSYIKGQGSI GKKASAENAL NEAINNAKNS LFPNTKAIRD AQNALNAVKD SNKIASRFAG NGGSGGLFNE LSFGYKYFLG KKRIIGFRHS LFFGYQLGGV GSVPGSGLIV FLPYGFNTDL LINWTNDKRA SQKYVERRVK GLSIFYKDMT GRTLDANTLK KASRHVFRKS SGLVIGMELG GSTWFASNNL TPFNQVKSRT IFQLQGKFGV RWNNDEYDID RYGDEIYLGG SSVELGVKVP AFKVNYYSDD YGDKLDYKRV VSVYLNYTYN FKNKH // ID O25371_HELPY Unreviewed; 432 AA. AC O25371; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 91. DE SubName: Full=Processing protease (YmxG) {ECO:0000313|EMBL:AAD07722.1}; GN OrderedLocusNames=HP_0657 {ECO:0000313|EMBL:AAD07722.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07722.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07722.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the peptidase M16 family. CC {ECO:0000256|RuleBase:RU004447}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07722.1; -; Genomic_DNA. DR PIR; A64602; A64602. DR RefSeq; NP_207451.1; NC_000915.1. DR RefSeq; WP_000714010.1; NC_018939.1. DR ProteinModelPortal; O25371; -. DR IntAct; O25371; 3. DR MINT; MINT-179063; -. DR STRING; 85962.HP0657; -. DR PaxDb; O25371; -. DR EnsemblBacteria; AAD07722; AAD07722; HP_0657. DR GeneID; 899304; -. DR KEGG; heo:C694_03395; -. DR KEGG; hpy:HP0657; -. DR PATRIC; 20592599; VBIHelPyl33062_0688. DR eggNOG; ENOG4105EV5; Bacteria. DR eggNOG; COG0612; LUCA. DR OMA; FAQILNE; -. DR OrthoDB; EOG6F2942; -. DR BioCyc; HPY:HP0657-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR Gene3D; 3.30.830.10; -; 2. DR InterPro; IPR011249; Metalloenz_LuxS/M16. DR InterPro; IPR011237; Pept_M16_dom. DR InterPro; IPR011765; Pept_M16_N. DR InterPro; IPR007863; Peptidase_M16_C. DR Pfam; PF00675; Peptidase_M16; 1. DR Pfam; PF05193; Peptidase_M16_C; 1. DR SUPFAM; SSF63411; SSF63411; 2. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Hydrolase {ECO:0000313|EMBL:AAD07722.1}; KW Protease {ECO:0000313|EMBL:AAD07722.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 432 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157903. FT DOMAIN 53 179 Peptidase_M16. FT {ECO:0000259|Pfam:PF00675}. FT DOMAIN 185 359 Peptidase_M16_C. FT {ECO:0000259|Pfam:PF05193}. SQ SEQUENCE 432 AA; 48801 MW; EDD161BD8E70AE79 CRC64; MKKFLITLLL GVFMGLQASA LTHQEINQAK VPVIYEENHL LPMGFIHLAF RGGGSLSDKN QLGLAKLFAQ VLNEGTKELG AVGFAQLLEQ KAISLNVDTS TEDLQITLEF LKEYEDEAIT RLKELLKSPN FTQNALEKVK TQMLAALLQK ESDFDYLAKL TLKQELFANT PLANAALGTK ESIQKIKLDD LKQQFAKVFE LNKLVVVLGG DLKIDQTLKR LNNALNFLPQ GKAYEEPYFE TSDKKSEKVL YKDTEQAFVY FGAPFKIKDL KQDLAKSKVM MFVLGGGFGS RLMEKIRVQE GLAYSVYIRS NFSKVAHFAS GYLQTKLSTQ TKSVALVKKI VKEFIEKGMT QQELDDAKKF LLGSEPLRNE TISSRLNTTY NYFYLGLPLN FNQTLLNQIQ KMSLKEINDF IKAHTEINDL TFAIVSNKKK DK // ID O26092_HELPY Unreviewed; 372 AA. AC O26092; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Regulatory protein DniR {ECO:0000313|EMBL:AAD08609.1}; GN OrderedLocusNames=HP_1572 {ECO:0000313|EMBL:AAD08609.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08609.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08609.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08609.1; -; Genomic_DNA. DR PIR; D64716; D64716. DR RefSeq; NP_208363.1; NC_000915.1. DR RefSeq; WP_000044457.1; NC_018939.1. DR ProteinModelPortal; O26092; -. DR DIP; DIP-3299N; -. DR IntAct; O26092; 3. DR MINT; MINT-175939; -. DR STRING; 85962.HP1572; -. DR CAZy; GH23; Glycoside Hydrolase Family 23. DR PaxDb; O26092; -. DR PRIDE; O26092; -. DR EnsemblBacteria; AAD08609; AAD08609; HP_1572. DR GeneID; 899719; -. DR KEGG; hpy:HP1572; -. DR PATRIC; 20594571; VBIHelPyl33062_1653. DR eggNOG; ENOG4105E9H; Bacteria. DR eggNOG; COG0741; LUCA. DR KO; K08307; -. DR OMA; WYLVAMA; -. DR OrthoDB; EOG6038ZC; -. DR BioCyc; HPY:HP1572-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.10.350.10; -; 1. DR InterPro; IPR018392; LysM_dom. DR InterPro; IPR023346; Lysozyme-like_dom. DR InterPro; IPR008258; Transglycosylase_SLT_dom_1. DR Pfam; PF01476; LysM; 1. DR Pfam; PF01464; SLT; 1. DR SMART; SM00257; LysM; 1. DR SUPFAM; SSF53955; SSF53955; 1. DR SUPFAM; SSF54106; SSF54106; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 27 {ECO:0000256|SAM:SignalP}. FT CHAIN 28 372 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157831. FT DOMAIN 318 361 LysM. {ECO:0000259|SMART:SM00257}. SQ SEQUENCE 372 AA; 43088 MW; 302BBC5235E8F6A8 CRC64; MSKRMKCFSQ KWLVFFVTLL LASLGHAKMA FESDIDTKAL EAFGVNAGFL SQMPNALKKM NKEEEWKRLV KRFDVNYQFI PIIKNMLIEA SVPQEFLFLA MAESKFSSRA YSRKKAVGIW QFMPSTAKEL GLKVNHYIDE RRDPIKSTQA AITYLKRLYK QTGEWYLVAM AYNYGLRKVQ NAIKAAGTSD IKILLDEDKK YLPKETREYI RSILSLALKF NSLDNLKDKE YLLNRGARVS LVGVPFKRRA SLVQVAKNLN LSLETLKSYN HQFRYNILPS KDPTYTIYIP YEKLALFKQR QIKQNKNIQA SSKSPFITHV VLPKETLSSI AKRYQVSISN IQLANDLKDS NIFIHQRLII PTNKKLLATR EF // ID O25398_HELPY Unreviewed; 96 AA. AC O25398; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07751.1}; GN OrderedLocusNames=HP_0689 {ECO:0000313|EMBL:AAD07751.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07751.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07751.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07751.1; -; Genomic_DNA. DR PIR; A64606; A64606. DR ProteinModelPortal; O25398; -. DR STRING; 85962.HP0689; -. DR PaxDb; O25398; -. DR PRIDE; O25398; -. DR EnsemblBacteria; AAD07751; AAD07751; HP_0689. DR PATRIC; 20592663; VBIHelPyl33062_0720. DR eggNOG; COG3298; LUCA. DR OMA; MWENYRA; -. DR OrthoDB; EOG6ZWJDD; -. DR BioCyc; HPY:HP0689-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR InterPro; IPR019288; 3'-5'_exonuclease_PolB-like. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF10108; DNA_pol_B_exo2; 1. DR SUPFAM; SSF53098; SSF53098; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 1 86 DNA_pol_B_exo2. FT {ECO:0000259|Pfam:PF10108}. SQ SEQUENCE 96 AA; 11133 MW; 1A9F6F6A6D7EBC22 CRC64; MMNIPGKFDV SGDLVHAIYY NPHLSQKEKK GVIDSYCQSD VLNTYWLFLK YEVLKGALNK EQYLGLLNDF LAKFPKEKSY SSVFTNALEK EIREFA // ID O25854_HELPY Unreviewed; 76 AA. AC O25854; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08321.1}; GN OrderedLocusNames=HP_1264 {ECO:0000313|EMBL:AAD08321.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08321.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08321.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:2LXR} RP STRUCTURE BY NMR. RA Lee K.; RT "Solution structure of HP1264, Complex I subunit E from Helicobacter RT pylori, reveals a novel fold for FMN binding protein."; RL Submitted (AUG-2012) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08321.1; -; Genomic_DNA. DR PIR; H64677; H64677. DR RefSeq; NP_208056.1; NC_000915.1. DR RefSeq; WP_000819168.1; NC_018939.1. DR PDB; 2LXR; NMR; -; A=1-76. DR PDBsum; 2LXR; -. DR ProteinModelPortal; O25854; -. DR STRING; 85962.HP1264; -. DR PaxDb; O25854; -. DR EnsemblBacteria; AAD08321; AAD08321; HP_1264. DR GeneID; 898999; -. DR KEGG; heo:C694_06535; -. DR KEGG; hpy:HP1264; -. DR PATRIC; 20593905; VBIHelPyl33062_1323. DR eggNOG; ENOG4105W8E; Bacteria. DR eggNOG; ENOG41121T3; LUCA. DR KO; K00334; -. DR OMA; NEVDWTI; -. DR OrthoDB; EOG6DVJW6; -. DR BioCyc; HPY:HP1264-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR032424; NADH-UOR_E. DR Pfam; PF16514; NADH-UOR_E; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2LXR}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 76 AA; 8926 MW; A010E8BB2A6D1977 CRC64; MKRFDLRPLK AGIFERLEEL IEKEMQPNEV AIFMFEVGDF SNIPKSAEFI QSKGHELLNS LRFNQADWTI VVRKKA // ID O26088_HELPY Unreviewed; 183 AA. AC O26088; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08611.1}; GN OrderedLocusNames=HP_1568 {ECO:0000313|EMBL:AAD08611.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08611.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08611.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08611.1; -; Genomic_DNA. DR PIR; H64715; H64715. DR RefSeq; NP_208359.1; NC_000915.1. DR RefSeq; WP_001267771.1; NC_018939.1. DR ProteinModelPortal; O26088; -. DR STRING; 85962.HP1568; -. DR PaxDb; O26088; -. DR EnsemblBacteria; AAD08611; AAD08611; HP_1568. DR GeneID; 899723; -. DR KEGG; heo:C694_08125; -. DR KEGG; hpy:HP1568; -. DR PATRIC; 20594563; VBIHelPyl33062_1649. DR eggNOG; ENOG410609H; Bacteria. DR eggNOG; COG1934; LUCA. DR KO; K09774; -. DR OMA; MRWWCFL; -. DR OrthoDB; EOG6PW23K; -. DR BioCyc; HPY:HP1568-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0042597; C:periplasmic space; IEA:InterPro. DR GO; GO:0001530; F:lipopolysaccharide binding; IEA:InterPro. DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro. DR InterPro; IPR014340; LptA. DR InterPro; IPR005653; OstA-like_N. DR Pfam; PF03968; OstA; 1. DR TIGRFAMs; TIGR03002; outer_YhbN_LptA; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 35 146 OstA-like_N. {ECO:0000259|Pfam:PF03968}. FT COILED 17 39 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 183 AA; 20878 MW; 1F727858BE10BC0B CRC64; MRWWCFLVCC FGILSVMDAK KLENKNLKKE RELLEITGNQ FVANDKTKTA VIQGNVQIKK GKDRLFADKV SVFLNDKRKP ERYEATGNTH FNIFTEDNRE ISGSADKLIY NALNGEYKLL QNAVVREVGK SNVITGDEII LNKTKGYADV LGSAKRPAKF VFDMEDINEE NRKAKLKKKG EKP // ID O24909_HELPY Unreviewed; 593 AA. AC O24909; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 70. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07151.1}; GN OrderedLocusNames=HP_0080 {ECO:0000313|EMBL:AAD07151.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07151.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07151.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07151.1; -; Genomic_DNA. DR PIR; H64529; H64529. DR RefSeq; NP_206880.1; NC_000915.1. DR RefSeq; WP_000644179.1; NC_018939.1. DR ProteinModelPortal; O24909; -. DR STRING; 85962.HP0080; -. DR PaxDb; O24909; -. DR EnsemblBacteria; AAD07151; AAD07151; HP_0080. DR GeneID; 898967; -. DR KEGG; heo:C694_00390; -. DR KEGG; hpy:HP0080; -. DR PATRIC; 20591367; VBIHelPyl33062_0084. DR OMA; DMNDDMG; -. DR OrthoDB; EOG66TG2X; -. DR BioCyc; HPY:HP0080-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 593 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157698. FT COILED 349 376 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 593 AA; 65970 MW; 731C02B2EB7C815A CRC64; MKAIKILFIM TLSLNAISVN RALFDLKDSQ LKGELTPKIV NFGGYKSSTE EWGATALNYI NAANGDAKKF STLVEKMRFN SGILGNLRVH ARLRQALKLQ KNLKYCLKII ARDSFYSYRT GIYIPLGISL KDQKTAQKML ADLSVVGAYL KKQQENEKAQ SPYYRNNNYY NSYYSPYYGM YGMYGMGMYG MYGMGMYDFY DFYDGMYGFY PNMFFMMQVQ DYLMLENYMY ALDQEEILDH DASTDQLDTP TDDDKDDKDD KSLQQANLMN FYRDPKFSKG IQTNRLNSAL VNLDNSRMLK DNSLFHTKAM PTKSVDAITS QAKELNHLVG QIKEMKQDGA SPSKIDSVVN KAMEVRDKLD NNLNQLDNDL KDQKGLSSEQ QAQVDKALDS VQQLSHSSDV VGNYLDGSLK IDGDDRDDLN DAMNNPMQQP VQQTPTSNMA DTHANDSKDQ GSNALINPNS ATNADDTHTD DTHTDTNTTN DASTTDTPTD DKDASGLNNT GDMNNTDTGN TDTGNTDTGN TDDMSNMNNG NDDTGNANDD MSNGNDMGDD LNNANDMNDD MGNGNDDMGD MGDMNDDMGG DMGDMGDMGD MGN // ID O25349_HELPY Unreviewed; 578 AA. AC O25349; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Quinone-reactive Ni/Fe hydrogenase, large subunit (HydB) {ECO:0000313|EMBL:AAD07692.1}; GN OrderedLocusNames=HP_0632 {ECO:0000313|EMBL:AAD07692.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07692.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07692.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the [NiFe]/[NiFeSe] hydrogenase large CC subunit family. {ECO:0000256|RuleBase:RU003896}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07692.1; -; Genomic_DNA. DR PIR; H64598; H64598. DR RefSeq; NP_207426.1; NC_000915.1. DR RefSeq; WP_000038087.1; NC_018939.1. DR ProteinModelPortal; O25349; -. DR DIP; DIP-3326N; -. DR IntAct; O25349; 1. DR MINT; MINT-178618; -. DR STRING; 85962.HP0632; -. DR PaxDb; O25349; -. DR EnsemblBacteria; AAD07692; AAD07692; HP_0632. DR GeneID; 900022; -. DR KEGG; heo:C694_03270; -. DR KEGG; hpy:HP0632; -. DR PATRIC; 20592547; VBIHelPyl33062_0662. DR eggNOG; ENOG4105DPX; Bacteria. DR eggNOG; COG0374; LUCA. DR KO; K05922; -. DR OMA; KMTAIFG; -. DR OrthoDB; EOG6M9DSB; -. DR BioCyc; HPY:HP0632-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008901; F:ferredoxin hydrogenase activity; IEA:InterPro. DR GO; GO:0016151; F:nickel cation binding; IEA:InterPro. DR Gene3D; 1.10.645.10; -; 1. DR InterPro; IPR001501; Ni-dep_hyd_lsu. DR InterPro; IPR018194; Ni-dep_hyd_lsu_Ni_BS. DR InterPro; IPR029014; NiFe_Hase-like. DR Pfam; PF00374; NiFeSe_Hases; 1. DR SUPFAM; SSF56762; SSF56762; 1. DR PROSITE; PS00507; NI_HGENASE_L_1; 1. DR PROSITE; PS00508; NI_HGENASE_L_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Metal-binding {ECO:0000256|RuleBase:RU003896}; KW Nickel {ECO:0000256|RuleBase:RU003896}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003896}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 40 557 NiFeSe_Hases. {ECO:0000259|Pfam:PF00374}. SQ SEQUENCE 578 AA; 64397 MW; 8804F5BBFF5C03F2 CRC64; MSKKIVVDPI TRIEGHLRIE VIVDDDNVIT DAFSSSTLFR GLETIIKGRD PRDAGFIAQR ICGVCTYSHY KAGITAVENA LGITPPLNAQ LVRSLMNMAL LFHDHVVHFY TLHGLDWCDI MSALKADPIQ AAKLSFKYSP YPINTGAGEL KAVQKRLSDF AKSGSLGPFS NGYYGHKTYR LSPEQNLIVL SHYLKLLEIQ REAAKMTAIF GAKQPHPQSL TVGGVTSVMD ILDPTRLAEW KSKFEVVANF INHAYYPDLV MAGEMFANEQ SVIKGCGLRN FIAYEEVLLG RDKYLLSSGV VLDGDISKLH PIDESLIKEE VTHSWYQYED TKEVQLHPYD GQTNPHYTGL KDGESVGIEN KIIPAKVLDT KNKYSWIKSP RYDSKPMEVG PLSSVVVGLA AKNPYVTEVA TKFLKDTKLP LEALFSTLGR TAARCIEAKT IADNGLLAFD ALVENLKSDQ STCAPYHIDK NQEYKGRYIG QVPRGMLSHW VRIKNGVVEN YQAVVPSTWN AGPRDSQNQR GAYEMSLIGT KIADLTQPLE IIRTIHSFDP CIACSVHVMD FKGQSLNEFK VEPNFAKF // ID O25648_HELPY Unreviewed; 394 AA. AC O25648; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08049.1}; GN OrderedLocusNames=HP_1002 {ECO:0000313|EMBL:AAD08049.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08049.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08049.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08049.1; -; Genomic_DNA. DR PIR; B64645; B64645. DR RefSeq; NP_207793.1; NC_000915.1. DR RefSeq; WP_000665511.1; NC_018939.1. DR ProteinModelPortal; O25648; -. DR DIP; DIP-3749N; -. DR IntAct; O25648; 2. DR MINT; MINT-165210; -. DR STRING; 85962.HP1002; -. DR PaxDb; O25648; -. DR EnsemblBacteria; AAD08049; AAD08049; HP_1002. DR GeneID; 899536; -. DR KEGG; heo:C694_05170; -. DR KEGG; hpy:HP1002; -. DR PATRIC; 20593329; VBIHelPyl33062_1046. DR OMA; DICMERN; -. DR OrthoDB; EOG618QPF; -. DR BioCyc; HPY:HP1002-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 28 {ECO:0000256|SAM:SignalP}. FT CHAIN 29 394 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158040. SQ SEQUENCE 394 AA; 45958 MW; 0900D9A9BCC0489D CRC64; MKETRLLKLR ALSLACLMGL GVSGCAFLDK QILNDHLTKA KNNPKYDCQK EMWSFPKKYD GINQCLKAQE ELIEPIITKK IDQYQCDDFT NEGLKDKCFK RNDAYLNTLL TPIIQKQERR FSCSDFHNPE LKEQCMDKTN AYEKQKDRQK RLINLVQLEA FEKEYAQYKP YIIPYFTKEC VKNAPHLANK ERLCQKEVHE KFDDPYSSSK ELSVQSAISF CIKKVDAKLE KAALMNGVYI SPYKKSTHCQ RTHLENKSLK EIALNMNPKL EKQSPFIDAD KMAMQSAGLL RKNKGVLIAF ATDICMERNE HKKEEFISLK DSCTQSQAKI YNNKERFDKF IQDYQKDLKT CLLDTSNTKE EVEQNFSQCQ KEQLRDDNKG LGFTLEELVK KYAK // ID O26093_HELPY Unreviewed; 254 AA. AC O26093; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08613.1}; GN OrderedLocusNames=HP_1573 {ECO:0000313|EMBL:AAD08613.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08613.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08613.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08613.1; -; Genomic_DNA. DR PIR; E64716; E64716. DR RefSeq; NP_208364.1; NC_000915.1. DR RefSeq; WP_000469349.1; NC_018939.1. DR ProteinModelPortal; O26093; -. DR STRING; 85962.HP1573; -. DR PaxDb; O26093; -. DR EnsemblBacteria; AAD08613; AAD08613; HP_1573. DR GeneID; 899718; -. DR KEGG; heo:C694_08150; -. DR KEGG; hpy:HP1573; -. DR PATRIC; 20594573; VBIHelPyl33062_1654. DR eggNOG; ENOG4105F8V; Bacteria. DR eggNOG; COG0084; LUCA. DR KO; K03424; -. DR OMA; FFAIGAH; -. DR OrthoDB; EOG66QM1C; -. DR BioCyc; HPY:HP1573-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016888; F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro. DR InterPro; IPR018228; DNase_TatD-rel_CS. DR InterPro; IPR015991; DNase_TatD-type. DR InterPro; IPR032466; Metal_Hydrolase. DR InterPro; IPR001130; TatD_family. DR PANTHER; PTHR10060; PTHR10060; 1. DR Pfam; PF01026; TatD_DNase; 1. DR PIRSF; PIRSF005902; DNase_TatD; 1. DR SUPFAM; SSF51556; SSF51556; 1. DR TIGRFAMs; TIGR00010; TIGR00010; 1. DR PROSITE; PS01137; TATD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 254 AA; 29177 MW; 464C1B35F6DE59DD CRC64; MFIDTHCHLD HKDYENDLEE VLKESLEKGV TQCVIPGADM KDLNRAIEIS EKFEGVFFAI GAHPYDVESF DESLFEKFVG HQKCVAIGEC GLDYYRLPEL NERENYKSKQ KEIFTKQIEF SIQHNKPLII HIREASFDSL NLLKNYPKAF GVLHCFNADG MLLELSDRFY YGIGGVSTFK NAKRLVEILP KIPKNRLLLE TDSPYLTPHP FRGTRNSPTY IPLIAQKIAE IINIETEELA SLSTHNAQML FSFP // ID O24901_HELPY Unreviewed; 189 AA. AC O24901; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07138.1}; GN OrderedLocusNames=HP_0061 {ECO:0000313|EMBL:AAD07138.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07138.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07138.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07138.1; -; Genomic_DNA. DR PIR; E64527; E64527. DR RefSeq; NP_206861.1; NC_000915.1. DR RefSeq; WP_000988444.1; NC_018939.1. DR ProteinModelPortal; O24901; -. DR DIP; DIP-3123N; -. DR IntAct; O24901; 3. DR MINT; MINT-167193; -. DR STRING; 85962.HP0061; -. DR PaxDb; O24901; -. DR EnsemblBacteria; AAD07138; AAD07138; HP_0061. DR GeneID; 900173; -. DR KEGG; heo:C694_00290; -. DR KEGG; hpy:HP0061; -. DR PATRIC; 20591323; VBIHelPyl33062_0063. DR OMA; MKTYHQS; -. DR OrthoDB; EOG66MQPQ; -. DR BioCyc; HPY:HP0061-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 189 AA; 21765 MW; F3356A6B5AA6EE16 CRC64; MMTKNAYAFV VIEESVMVFK RTKDEGLMPI FEGFVPLKEG FLKSFKERCN LEFLENLDLL FLYDKPSAHE IFSLCKELKN SIWDRKLVVA LVEALEGFKD WNLSLKIEDK RSNSLGNGTK KLLTNADLGS DYKTIVIDSM KTYHQSQQEK YKRERGETLE VRPTTPPSYG GGSIRISGDK KPDFDEENF // ID O25586_HELPY Unreviewed; 100 AA. AC O25586; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07980.1}; GN OrderedLocusNames=HP_0932 {ECO:0000313|EMBL:AAD07980.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07980.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07980.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07980.1; -; Genomic_DNA. DR PIR; D64636; D64636. DR ProteinModelPortal; O25586; -. DR STRING; 85962.HP0932; -. DR PaxDb; O25586; -. DR PRIDE; O25586; -. DR EnsemblBacteria; AAD07980; AAD07980; HP_0932. DR PATRIC; 20593165; VBIHelPyl33062_0968. DR BioCyc; HPY:HP0932-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 100 AA; 11937 MW; E626AAC30D50D914 CRC64; MLFSWGAVLL LSNPTDYYAI NGFSEQILMS ANSHFILDWY DVVLQKRVLY VDGSVSGRTC GYQMLYRDLI KSTIKRIDFN RPERYYYNLR LPLYQPCYRQ // ID O25822_HELPY Unreviewed; 226 AA. AC O25822; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Uroporphyrinogen III cosynthase (HemD) {ECO:0000313|EMBL:AAD08269.1}; GN OrderedLocusNames=HP_1224 {ECO:0000313|EMBL:AAD08269.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08269.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08269.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). RN [2] {ECO:0000213|PDB:3P9Z} RP X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS). RA Nocek B., Stein A., Chhor G., Fenske R.J., Buck K., Joachimiak A.; RT "Crystal structure of uroporphyrinogen-III synthetase from RT Helicobacter pylori 26695."; RL Submitted (OCT-2010) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08269.1; -; Genomic_DNA. DR PIR; H64672; H64672. DR RefSeq; NP_208016.1; NC_000915.1. DR RefSeq; WP_001862414.1; NC_018939.1. DR PDB; 3P9Z; X-ray; 2.10 A; A=1-226. DR PDBsum; 3P9Z; -. DR ProteinModelPortal; O25822; -. DR DIP; DIP-3674N; -. DR IntAct; O25822; 7. DR MINT; MINT-160212; -. DR STRING; 85962.HP1224; -. DR PaxDb; O25822; -. DR EnsemblBacteria; AAD08269; AAD08269; HP_1224. DR GeneID; 899017; -. DR KEGG; heo:C694_06320; -. DR KEGG; hpy:HP1224; -. DR PATRIC; 20593819; VBIHelPyl33062_1280. DR eggNOG; ENOG4105M76; Bacteria. DR eggNOG; COG1587; LUCA. DR KO; K01719; -. DR OMA; FQQAVVY; -. DR OrthoDB; EOG6FFS52; -. DR BioCyc; HPY:HP1224-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0004852; F:uroporphyrinogen-III synthase activity; IEA:InterPro. DR GO; GO:0033014; P:tetrapyrrole biosynthetic process; IEA:InterPro. DR InterPro; IPR003754; 4pyrrol_synth_uPrphyn_synth. DR Pfam; PF02602; HEM4; 1. DR SUPFAM; SSF69618; SSF69618; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:3P9Z}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 30 215 HEM4. {ECO:0000259|Pfam:PF02602}. SQ SEQUENCE 226 AA; 25862 MW; 82BAF4B54D6AFEBF CRC64; MREIVWVHSQ RIAPYKTLIL NEFCYYPLEL DPTPFNALIF TSKNAVFSLL ETLKNSPKLK MLQNIPAYAL SEPTAKTLQD HHFKVAFMGE KAHGKEFVQE IFPLLEKKSV LYLRAKEIVS SLDTILLEHG IDFKQAVVYE NKLKHLTLSE QNALKPKEKS ILIFTAISHA KAFLHYFEFL ENYTAISIGN TTALYLQEQG IPSYIAKKPS LEACLELALS LRIKEC // ID O26019_HELPY Unreviewed; 190 AA. AC O26019; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 82. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08520.1}; GN OrderedLocusNames=HP_1485 {ECO:0000313|EMBL:AAD08520.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08520.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08520.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08520.1; -; Genomic_DNA. DR PIR; E64705; E64705. DR RefSeq; NP_208276.1; NC_000915.1. DR RefSeq; WP_000854221.1; NC_018939.1. DR ProteinModelPortal; O26019; -. DR DIP; DIP-3503N; -. DR IntAct; O26019; 1. DR MINT; MINT-168864; -. DR STRING; 85962.HP1485; -. DR PaxDb; O26019; -. DR DNASU; 899807; -. DR EnsemblBacteria; AAD08520; AAD08520; HP_1485. DR GeneID; 899807; -. DR KEGG; heo:C694_07690; -. DR KEGG; hpy:HP1485; -. DR PATRIC; 20594381; VBIHelPyl33062_1559. DR eggNOG; ENOG4108ZK7; Bacteria. DR eggNOG; COG1739; LUCA. DR OMA; MHPNATH; -. DR OrthoDB; EOG6N685N; -. DR BioCyc; HPY:HP1485-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.30.230.30; -; 1. DR InterPro; IPR023582; Impact. DR InterPro; IPR015796; Impact_bac/arc. DR InterPro; IPR001498; Impact_N. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR PANTHER; PTHR16301; PTHR16301; 1. DR Pfam; PF01205; UPF0029; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR TIGRFAMs; TIGR00257; IMPACT_YIGZ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 15 114 UPF0029. {ECO:0000259|Pfam:PF01205}. SQ SEQUENCE 190 AA; 21467 MW; 0CBDB3C1BF4FFD3F CRC64; MKTLKNLITS KHQTKASRFL GYLMPFDDFE KTLLQLKKEH FKAAHFVTAF RYSLEGKITE GFSDDGEPKG SSGMPMLSVL RREDLINIGL VSVRYFGGTL LGVGGLMKAY AKSALLCVEN AQKEDALKDF VELETLSAHY SYKELDALQR EIKKFSLQLS KKNFSNQSVE VEISGTRENL QAFLQQNKIN // ID O25496_HELPY Unreviewed; 553 AA. AC O25496; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 102. DE SubName: Full=Osmoprotection protein (ProWX) {ECO:0000313|EMBL:AAD07866.1}; GN OrderedLocusNames=HP_0818 {ECO:0000313|EMBL:AAD07866.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07866.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07866.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07866.1; -; Genomic_DNA. DR PIR; B64622; B64622. DR RefSeq; NP_207611.1; NC_000915.1. DR RefSeq; WP_000901317.1; NC_018939.1. DR ProteinModelPortal; O25496; -. DR DIP; DIP-3623N; -. DR IntAct; O25496; 2. DR MINT; MINT-161828; -. DR STRING; 85962.HP0818; -. DR PaxDb; O25496; -. DR EnsemblBacteria; AAD07866; AAD07866; HP_0818. DR GeneID; 899359; -. DR KEGG; heo:C694_04190; -. DR KEGG; hpy:HP0818; -. DR PATRIC; 20592923; VBIHelPyl33062_0850. DR eggNOG; ENOG4108EHJ; Bacteria. DR eggNOG; COG1174; LUCA. DR eggNOG; COG1732; LUCA. DR KO; K05845; -. DR KO; K05846; -. DR OMA; HEMDINL; -. DR OrthoDB; EOG6VTK20; -. DR BioCyc; HPY:HP0818-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR007210; ABC_Gly_betaine_transp_sub-bd. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR Pfam; PF04069; OpuAC; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|SAAS:SAAS00524216}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 57 84 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 91 116 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 122 142 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 169 197 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 217 240 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 261 280 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 57 236 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 553 AA; 62471 MW; E39BCB1D42E7E744 CRC64; MLGMGVFKQL IKGLYEWLLH SIDVATQHLV AIVLKISVVK YLIKEFHDRF IYFIDLIAQH FIIVALSSFL VLVFGVLIGV LVFYNSKARA FLLPVVNFLY TIPSLALFAL FIPVIGVGLK NALLVLVLYG LLPIVHSTYN ALKEVREEVI KAAIGLGCNP KELFFKVRFL LAIPQILAGL RIAVVMLVAM AGIGALIGAG GLGQAIFRGL NTQNTTLLVA GSLIIALFSV LADKFVSVFQ HENALQRLFS QNATKKQKRR VYTNLAVFLF LLLASALWLI PRNAIEEKPL VVATKPSSEQ YILGEILSLL LEKHHIPIKR AFGIGGGTMN IHPALIRGDF DLYVEYTGTA WVNTLKNPLT QKVDFETIKK RYEKEFNLLW VGLLGFNNTY SLAISKEDAQ KYAIETFSDL AFHSPNFDFG AEFDFFERED AFKGLVKAYR FHFRSLHEMD INLRYKSFES HKINALDVFT TDAQIKELDL KVLKDDKGFF PNYQAGIVIR KEIVKKYPEA LEILEKLDSK ISDEKMQDLN YQVEVLKKSP QIVAKDFLER LGL // ID O26056_HELPY Unreviewed; 25 AA. AC O26056; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08577.1}; GN OrderedLocusNames=HP_1528 {ECO:0000313|EMBL:AAD08577.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08577.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08577.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08577.1; -; Genomic_DNA. DR PIR; H64710; H64710. DR RefSeq; WP_010875636.1; NC_018939.1. DR STRING; 85962.HP1528; -. DR PaxDb; O26056; -. DR EnsemblBacteria; AAD08577; AAD08577; HP_1528. DR KEGG; heo:C694_07915; -. DR BioCyc; HPY:HP1528-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 25 AA; 3075 MW; E080E93A41CE396E CRC64; MLIPFYFRFL DYSLKKGLVK VINRL // ID O25546_HELPY Unreviewed; 202 AA. AC O25546; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07927.1}; GN OrderedLocusNames=HP_0879 {ECO:0000313|EMBL:AAD07927.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07927.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07927.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- INTERACTION: CC O34461:HP_0424; NbExp=4; IntAct=EBI-7585860, EBI-7506839; CC O26081:HP_1559; NbExp=3; IntAct=EBI-7585860, EBI-7500288; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07927.1; -; Genomic_DNA. DR PIR; G64629; G64629. DR RefSeq; NP_207673.1; NC_000915.1. DR RefSeq; WP_010875556.1; NC_000915.1. DR ProteinModelPortal; O25546; -. DR DIP; DIP-3561N; -. DR IntAct; O25546; 44. DR MINT; MINT-159702; -. DR STRING; 85962.HP0879; -. DR PaxDb; O25546; -. DR PRIDE; O25546; -. DR DNASU; 899408; -. DR EnsemblBacteria; AAD07927; AAD07927; HP_0879. DR GeneID; 899408; -. DR KEGG; hpy:HP0879; -. DR PATRIC; 20593047; VBIHelPyl33062_0911. DR eggNOG; ENOG4105UNZ; Bacteria. DR eggNOG; COG1432; LUCA. DR OMA; HAIRMEF; -. DR OrthoDB; EOG6SJJHC; -. DR BioCyc; HPY:HP0879-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR Gene3D; 3.40.50.1010; -; 2. DR InterPro; IPR021139; NYN_limkain-b1. DR InterPro; IPR029060; PIN_domain-like. DR Pfam; PF01936; NYN; 1. PE 1: Evidence at protein level; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 104 155 NYN. {ECO:0000259|Pfam:PF01936}. SQ SEQUENCE 202 AA; 23496 MW; 905B618C9A5AAC2B CRC64; MMNGISRIYF YTTPPFDFEH ALWDKRNDTL QNEKNPGTEM KIFTSSDIEE ILQSSEATKW EKIYSDVENF QHDLASLDQV ELRLGRTKLN AIRVEFDGSY RALLEQKQVD MLMGLDIQRI AFKKIADRIL IFSKDTDLIP ALKLARDEGL RVDIADLSNR LSLLSQDLKY NSDKVRKLSS NEVKDKLFSI RENLTKTNWA LN // ID O25292_HELPY Unreviewed; 255 AA. AC O25292; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07630.1}; GN OrderedLocusNames=HP_0568 {ECO:0000313|EMBL:AAD07630.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07630.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07630.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07630.1; -; Genomic_DNA. DR PIR; H64590; H64590. DR RefSeq; NP_207363.1; NC_000915.1. DR RefSeq; WP_001863342.1; NC_000915.1. DR IntAct; O25292; 1. DR STRING; 85962.HP0568; -. DR PaxDb; O25292; -. DR EnsemblBacteria; AAD07630; AAD07630; HP_0568. DR GeneID; 899279; -. DR KEGG; heo:C694_02930; -. DR KEGG; hpy:HP0568; -. DR PATRIC; 20592409; VBIHelPyl33062_0593. DR eggNOG; ENOG4105TIY; Bacteria. DR eggNOG; ENOG410XRDB; LUCA. DR OMA; YCYGLIK; -. DR OrthoDB; EOG6QCD7R; -. DR BioCyc; HPY:HP0568-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR023885; 4Fe4S-binding_SPASM_dom. DR InterPro; IPR013785; Aldolase_TIM. DR Pfam; PF13186; SPASM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 181 246 SPASM. {ECO:0000259|Pfam:PF13186}. SQ SEQUENCE 255 AA; 29345 MW; 807DEAD5794C18BA CRC64; MPLELFEKVC KEVAPLTQMI TLHVLGDPCK LKNLNHYLST ARRFSLKVDL VTSGVYLHDF ETLLQDVIYQ ISISLDAGLD HRNKLNQHRY IQKILEFCRY KCEKNSEVFL NLRIQDSTLD KHQNLIKPFL ESFECVSLEG LKTQGRARLF KKSFLNIQKT FKWPSLNAQN PLNQKSKIPY CYGLIKQIAI LSNGVVVPCC MDTQANISLG DLNHTPLKDV LKSQKAMAIK THFLKGEALE LLCQNCSYPL IRYKK // ID O26078_HELPY Unreviewed; 615 AA. AC O26078; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Cell division protein (FtsI) {ECO:0000313|EMBL:AAD08596.1}; GN OrderedLocusNames=HP_1556 {ECO:0000313|EMBL:AAD08596.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08596.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08596.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08596.1; -; Genomic_DNA. DR PIR; D64714; D64714. DR RefSeq; NP_208347.1; NC_000915.1. DR RefSeq; WP_000370329.1; NC_000915.1. DR ProteinModelPortal; O26078; -. DR IntAct; O26078; 2. DR MINT; MINT-4063964; -. DR STRING; 85962.HP1556; -. DR PaxDb; O26078; -. DR PRIDE; O26078; -. DR EnsemblBacteria; AAD08596; AAD08596; HP_1556. DR GeneID; 899735; -. DR KEGG; hpy:HP1556; -. DR PATRIC; 20594535; VBIHelPyl33062_1635. DR eggNOG; ENOG4105CJN; Bacteria. DR eggNOG; COG0768; LUCA. DR KO; K03587; -. DR OMA; PNKEDFF; -. DR OrthoDB; EOG6N0HHV; -. DR BioCyc; HPY:HP1556-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008658; F:penicillin binding; IEA:InterPro. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR Gene3D; 3.40.710.10; -; 1. DR InterPro; IPR012338; Beta-lactam/transpept-like. DR InterPro; IPR005311; PBP_dimer. DR InterPro; IPR001460; PCN-bd_Tpept. DR Pfam; PF03717; PBP_dimer; 1. DR Pfam; PF00905; Transpeptidase; 1. DR SUPFAM; SSF56519; SSF56519; 1. DR SUPFAM; SSF56601; SSF56601; 1. PE 4: Predicted; KW Cell cycle {ECO:0000313|EMBL:AAD08596.1}; KW Cell division {ECO:0000313|EMBL:AAD08596.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 62 237 PBP_dimer. {ECO:0000259|Pfam:PF03717}. FT DOMAIN 282 588 Transpeptidase. FT {ECO:0000259|Pfam:PF00905}. SQ SEQUENCE 615 AA; 69439 MW; 0D33C58C373A9E18 CRC64; MDNRNIDPYF NPEQFLETQK YKGTVTALIF LLLFFIFLMV AFKKAFFAQA NMPNLVMSKQ DTAARGTIYS QDNYSLATSQ TLFKLGFDTR FLNPDKEDFF IDFLSIYSNI PKKSLKDAIN TKGYIILAYD LTPNMAANIR DLNKKFLAFG VFQNFKDAHD KVWQKQGLNI EVSGVSRHYP YQNSLEPIIG YVQKQEEDKL TLTTGKKGVE KSQDHLLKAQ QNGIRTGKRD VSFNFIQNHS YTEVERLDGY EVYLSVPLKL QREIETLLDK TKDKLKAKEI LVGIINPKSG EILSLASSKR FNPNAIKTSD YESLNLSVAE KVFEPGSTIK PIVYSLLLDK NLINPKERID LNHGYYQLGK YTIKDDFIPS KKAVVEDILI QSSNVGMIKI SKNLNPKDFY NGLLGYGFSQ KTGIDLSLEA TGKIPPLSAF KREVLKGSVS YGYGLNATFL QLLRAYAVFS NEGKLTTPYL VQRETAPNGD IYIPSPKPTF QVISPKSARK MKETLIKVVR YGTGKNAQFE GLYIGGKTGT ARVAKNGSYS AQSYNSSFFG FAEDERQVFT IGVVILGSHG KEEYYASKIA APIFKEITEI LVRYNYLSPS IAIQNALEKN RFKIK // ID O24871_HELPY Unreviewed; 177 AA. AC O24871; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 62. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:AAD07099.1}; GN OrderedLocusNames=HP_0028 {ECO:0000313|EMBL:AAD07099.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07099.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07099.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07099.1; -; Genomic_DNA. DR PIR; D64523; D64523. DR RefSeq; NP_206830.1; NC_000915.1. DR RefSeq; WP_000766914.1; NC_000915.1. DR ProteinModelPortal; O24871; -. DR DIP; DIP-3089N; -. DR IntAct; O24871; 14. DR MINT; MINT-163160; -. DR STRING; 85962.HP0028; -. DR PaxDb; O24871; -. DR PRIDE; O24871; -. DR EnsemblBacteria; AAD07099; AAD07099; HP_0028. DR GeneID; 899124; -. DR KEGG; hpy:HP0028; -. DR PATRIC; 20591255; VBIHelPyl33062_0029. DR eggNOG; ENOG4108PG9; Bacteria. DR eggNOG; ENOG41106GC; LUCA. DR OMA; RSVCTLF; -. DR OrthoDB; EOG6SV58G; -. DR BioCyc; HPY:HP0028-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011088; Phage_phiNM3_A0EWY4. DR Pfam; PF07509; DUF1523; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 151 172 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 177 AA; 20649 MW; 41F1CC99A2346102 CRC64; MKLIKFVRNV VLFILTAIFL AFMLLVSYCM PHYSAAVISG VEVKRMNENE NTPNNKEVKT LARDVYFVQT YDPKDQKSVT VYRNEDTRFS FPFYFKFNSA DISALAQSLI NQQVEVKYYG WRINLFNMFP NVIFLKPLKE STDISKPIFS WILYALLLMG FFISARSVCT LFKSKAH // ID O26055_HELPY Unreviewed; 479 AA. AC O26055; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08574.1}; GN OrderedLocusNames=HP_1527 {ECO:0000313|EMBL:AAD08574.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08574.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08574.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08574.1; -; Genomic_DNA. DR PIR; G64710; G64710. DR RefSeq; NP_208317.1; NC_000915.1. DR RefSeq; WP_000749005.1; NC_018939.1. DR ProteinModelPortal; O26055; -. DR DIP; DIP-3660N; -. DR IntAct; O26055; 2. DR MINT; MINT-167927; -. DR STRING; 85962.HP1527; -. DR PaxDb; O26055; -. DR EnsemblBacteria; AAD08574; AAD08574; HP_1527. DR GeneID; 899763; -. DR KEGG; heo:C694_07910; -. DR KEGG; hpy:HP1527; -. DR PATRIC; 20594475; VBIHelPyl33062_1605. DR OMA; SSEYKEW; -. DR OrthoDB; EOG664CCH; -. DR BioCyc; HPY:HP1527-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 479 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004158069. SQ SEQUENCE 479 AA; 54784 MW; 38D5E53976324B39 CRC64; MKKSLCLSFF LTFSNPLQAL VIELLEEIKT SPHKGTFKAK VLDSKKPRQV LGVYNISPHK KLTLTITHIS TAIVYQPLDE KLSLETTLNP NRPTIPRNTQ IVFSSKELKE SHPHQMPSLN APMQKPQNKP HSSQQPSQNF SYPEPKLGSK NSKNSLLQPL AIPSKISPTN ETQTPTNDTK PPLKHSSEDQ ESNLFITPPT EKTLPNNTSN ADISENNESN ENKDNVEKQA IRDANIKEFA CGKWVYDDEN LQAYRPSILK RVDEDKQTAT DITPCDYSTA ENKSGKIITP YTKISVHKTE PLEEPQTFEA KNNFAILQAR SSTEKCKRAR ARKDGTTRQC YLIEEPLKQA WESEYEITTQ LVKAIYERPK QDDQVEPTFY ETSELAYSST RKSEITHNEL NLNEKFMEFV EVYEGHYLND IIKESSEYKE WVKNHVRFKE GVCMALEIEE QPRAKSTPLS IENSRVVCVK KGNYLFNEV // ID O25573_HELPY Unreviewed; 562 AA. AC O25573; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 85. DE SubName: Full=Iron-regulated outer membrane protein (FrpB) {ECO:0000313|EMBL:AAD07961.1}; GN OrderedLocusNames=HP_0915 {ECO:0000313|EMBL:AAD07961.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07961.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07961.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07961.1; -; Genomic_DNA. DR PIR; C64634; C64634. DR RefSeq; WP_001863228.1; NC_018939.1. DR ProteinModelPortal; O25573; -. DR STRING; 85962.HP0915; -. DR PaxDb; O25573; -. DR EnsemblBacteria; AAD07961; AAD07961; HP_0915. DR KEGG; heo:C694_04710; -. DR PATRIC; 20593133; VBIHelPyl33062_0952. DR eggNOG; ENOG41088XV; Bacteria. DR eggNOG; COG1629; LUCA. DR KO; K02014; -. DR OrthoDB; EOG6384F1; -. DR BioCyc; HPY:HP0915-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.40.170.20; -; 2. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF00593; TonB_dep_Rec; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 286 561 TonB_dep_Rec. {ECO:0000259|Pfam:PF00593}. SQ SEQUENCE 562 AA; 62691 MW; 9432F576C75574B6 CRC64; MAKINGYLSE RDILTLSYNM TRDNANRPLR ANFTGTFLPY SCGDFNAFPN EKNPSDCLFE NDASLFKTYS VNLVHNVSLN YEREGGSRFG DPKLKINGYT SIRNVQIDPL FKPNDIAASI PFTPNPKLGE ENECVAQGGI YDALKQTCSI TFKSLGGGSV VANKNLFIIN SGFNANVIHT IDHKNDNLLE YGLNYQNLTT FDKAIPNSEL VKPGDAPDAC LRVTSPNDPN MNGRCQRNGA TANVIGVYAQ ANYTLHPMVT LGAGTRYDVY TLVDKDWQLH ITQGFSPSAA LNVSPLENLN FRLSYAYVTR GPMPGGLVWM RQDNLRYNRN LKPEIGQNVE FNTEYSSQYF DFRAAGFVQL ISNYINQFSS TLFVTNLPAQ DIIYVPGYEV SGTAKYKGFS LGLSVARSWP SLKGRLIADV YELAATTGNV FILTASYKIP RTGLSITWLS RFVTDLSYCS YSPYRNGPTD IDRRPSNCPK TPGIFHVHKP GYGVSSFFVT YKPTYKKLKG LSLNAVFNNV FNQQYIDQAS PVMSPDEPNQ DKYARGMAEP GFNARFEISY KF // ID O25111_HELPY Unreviewed; 154 AA. AC O25111; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07415.1}; GN OrderedLocusNames=HP_0344 {ECO:0000313|EMBL:AAD07415.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07415.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07415.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07415.1; -; Genomic_DNA. DR PIR; H64562; H64562. DR ProteinModelPortal; O25111; -. DR STRING; 85962.HP0344; -. DR PaxDb; O25111; -. DR PRIDE; O25111; -. DR EnsemblBacteria; AAD07415; AAD07415; HP_0344. DR PATRIC; 20591923; VBIHelPyl33062_0358. DR eggNOG; ENOG4106WSG; Bacteria. DR eggNOG; ENOG410YRRV; LUCA. DR OMA; FRSECGK; -. DR OrthoDB; EOG676Z39; -. DR BioCyc; HPY:HP0344-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 54 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 114 144 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 154 AA; 17755 MW; EAB498035188B794 CRC64; MFFALSLFAL WCLARLKKML KSTIKEDYLM LMSREVSAFV GTLFFIGLSC YAIYHGNMPD YLRPALIDTI KAASDSIYSS CDYMDYFLKA RKMLEGFAWW SMFKAESMGL NKGFMVAGWV AFIIYNALSG IAISRLSAQI IYWLSKYFRS EYGK // ID O25922_HELPY Unreviewed; 288 AA. AC O25922; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE RecName: Full=Methyltransferase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.- {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=HP_1370 {ECO:0000313|EMBL:AAD08413.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08413.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08413.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08413.1; -; Genomic_DNA. DR PIR; B64691; B64691. DR ProteinModelPortal; O25922; -. DR IntAct; O25922; 1. DR MINT; MINT-176311; -. DR STRING; 85962.HP1369m; -. DR REBASE; 56825; M.Hpy26695ORFCP. DR PaxDb; O25922; -. DR EnsemblBacteria; AAD08413; AAD08413; HP_1370. DR KEGG; heo:C694_07070; -. DR PATRIC; 20594129; VBIHelPyl33062_1435. DR eggNOG; ENOG4107QMH; Bacteria. DR eggNOG; COG2189; LUCA. DR KO; K07316; -. DR OMA; GCKNESY; -. DR OrthoDB; EOG6JMMQ2; -. DR BioCyc; HPY:HP1370-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 69 164 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 288 AA; 32929 MW; 0F2B757C210F073F CRC64; MYKLKDENGF YKLDPVWAKS GNNFSPYTFL NGKTWSPPSG TFWRYSIGTL KDMEQNNRIV FNGKNPMAKR YLSEVAEGRK SSTFWDGSEV GYNLNGDAEI KQLFNGNKVF NNPKPEALLQ RILEISTKEN DLVLDFFAGS GTTCAVAHKM KRKYIGIEMG EHFESVILPR LKKVIGGFKS GAAKEFDGGG VIKVYELESY EEILRKIKYE DNDKPLAYDE QYSDLVERKN ESYTLNIEAL EKMGVDIKET LENLWGVGVE FFNEKVVKFK GNDKEVEILK ALKEALIW // ID O25706_HELPY Unreviewed; 200 AA. AC O25706; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 81. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08104.1}; GN OrderedLocusNames=HP_1066 {ECO:0000313|EMBL:AAD08104.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08104.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08104.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08104.1; -; Genomic_DNA. DR PIR; B64653; B64653. DR RefSeq; NP_207857.1; NC_000915.1. DR RefSeq; WP_000559109.1; NC_018939.1. DR ProteinModelPortal; O25706; -. DR PaxDb; O25706; -. DR EnsemblBacteria; AAD08104; AAD08104; HP_1066. DR GeneID; 899602; -. DR KEGG; heo:C694_05510; -. DR KEGG; hpy:HP1066; -. DR PATRIC; 20593471; VBIHelPyl33062_1115. DR OMA; MVFMRPL; -. DR OrthoDB; EOG60GRV8; -. DR BioCyc; HPY:HP1066-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 200 AA; 23543 MW; 73F8D150F604681B CRC64; MHYLRILILS MSFLNILNAE NLSYMSSSYQ IGTVFMRPLN TNKLLQGASI LQGYEVNPKN DWAYSRYYFF IDYGNVLFNN DSTLQANMFT YGVGGDFMVA YAKNPINRWA FFFGLQLAAN TWILNNKVKD LVVNTWDSLK DFNFHNTYFR AIGKFGVQFR TIVLYHKVDV EIGMKIFLTP ERRSLFERSF LFFVSHSWHF // ID O25056_HELPY Unreviewed; 340 AA. AC O25056; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 84. DE SubName: Full=Lipopolysaccharide heptosyltransferase-1 (RfaC) {ECO:0000313|EMBL:AAD07342.1}; GN OrderedLocusNames=HP_0279 {ECO:0000313|EMBL:AAD07342.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07342.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07342.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07342.1; -; Genomic_DNA. DR PIR; G64554; G64554. DR RefSeq; NP_207077.1; NC_000915.1. DR RefSeq; WP_000684682.1; NC_018939.1. DR ProteinModelPortal; O25056; -. DR DIP; DIP-3331N; -. DR IntAct; O25056; 1. DR MINT; MINT-181367; -. DR STRING; 85962.HP0279; -. DR CAZy; GT9; Glycosyltransferase Family 9. DR PaxDb; O25056; -. DR EnsemblBacteria; AAD07342; AAD07342; HP_0279. DR GeneID; 900111; -. DR KEGG; heo:C694_01410; -. DR KEGG; hpy:HP0279; -. DR PATRIC; 20591785; VBIHelPyl33062_0290. DR eggNOG; ENOG4105D16; Bacteria. DR eggNOG; COG0859; LUCA. DR KO; K02841; -. DR OMA; DSPKINA; -. DR OrthoDB; EOG6WQD45; -. DR BioCyc; HPY:HP0279-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0008920; F:lipopolysaccharide heptosyltransferase activity; IEA:InterPro. DR GO; GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:InterPro. DR InterPro; IPR002201; Glyco_trans_9. DR InterPro; IPR011908; LipoPS_heptosylTferase-I. DR Pfam; PF01075; Glyco_transf_9; 1. DR TIGRFAMs; TIGR02193; heptsyl_trn_I; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07342.1}. SQ SEQUENCE 340 AA; 38779 MW; 5422A023968E5B8D CRC64; MKIAIVRLSA LGDIIVSAVF LAVIKECLPN AQIEWFVDER FSAILEHSPY IDKLHPIALK SALKTLNPLK IFKLFKSLRA YEYDIIIDMQ GLVKSALITQ MLKAPKKVGF DYASAREGLS MFFYSQKVSI AYDEPVLKRN FTLLSHALNL PQKEISKEIS ESLSSRAKAF SYQPSPKIDA LNLNKNKPKI LFILETSKIN KTYPIERFKE LALILENFQI CLLWHADEYK ATTLYHALKH QRDVLLLPKL TLNEVKALLF KMDLIIGGDT GITHLAWALQ KPSITLYGNT PMERFKLESP INVSLTGNSN ANYHKKDFSI QNIEPKKIKE CVLNILKEKE // ID O25642_HELPY Unreviewed; 267 AA. AC O25642; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD08039.1}; GN OrderedLocusNames=HP_0994 {ECO:0000313|EMBL:AAD08039.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08039.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08039.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08039.1; -; Genomic_DNA. DR PIR; B64644; B64644. DR RefSeq; NP_207785.1; NC_000915.1. DR RefSeq; WP_000009111.1; NC_000915.1. DR ProteinModelPortal; O25642; -. DR STRING; 85962.HP0994; -. DR PaxDb; O25642; -. DR PRIDE; O25642; -. DR EnsemblBacteria; AAD08039; AAD08039; HP_0994. DR GeneID; 899527; -. DR KEGG; hpy:HP0994; -. DR PATRIC; 20593313; VBIHelPyl33062_1038. DR eggNOG; ENOG4105X2F; Bacteria. DR eggNOG; ENOG4112492; LUCA. DR OMA; SPKLWID; -. DR OrthoDB; EOG6DG2QN; -. DR BioCyc; HPY:HP0994-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR014942; AbiEii. DR Pfam; PF08843; AbiEii; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 267 AA; 30854 MW; 6ED537D28FADE5C3 CRC64; MSFLSIPINE KSLSFIKNNF QAQIQALEQF YPIIKNALNL GLNPSSIKFG GGTALSMYYF QHRLSFDMDL FVNDAQCLGF FSPKLWIDNC SHFDSTRYID QHNHIGVTNK DNIKIDVLVD YASNEGYVDN SKKIFAFDIY IESLENIIAK KITFRKTDNK TRDIFDIAVA LHNDNNLFDK LLSSQKITKQ DLLTLQNSLQ ELDKKRYSIE IDMVEPISHY KDLSLSAYDF LIDKIDQIKT ATYSNSHDNA DDLDNSNEYT PTPKRRR // ID O24935_HELPY Unreviewed; 98 AA. AC O24935; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 73. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07187.1}; GN OrderedLocusNames=HP_0113 {ECO:0000313|EMBL:AAD07187.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07187.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07187.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07187.1; -; Genomic_DNA. DR PIR; A64534; A64534. DR RefSeq; NP_206913.1; NC_000915.1. DR RefSeq; WP_000154738.1; NC_018939.1. DR ProteinModelPortal; O24935; -. DR DIP; DIP-3193N; -. DR IntAct; O24935; 1. DR MINT; MINT-164195; -. DR STRING; 85962.HP0113; -. DR PaxDb; O24935; -. DR EnsemblBacteria; AAD07187; AAD07187; HP_0113. DR GeneID; 900265; -. DR KEGG; heo:C694_00560; -. DR KEGG; hpy:HP0113; -. DR PATRIC; 20591441; VBIHelPyl33062_0120. DR OMA; HYTPNFT; -. DR OrthoDB; EOG63FW4P; -. DR BioCyc; HPY:HP0113-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 98 AA; 11074 MW; E03687A778CC775A CRC64; MTINTHYTPN FTQLQTLNNI NNDATIKDRN QVEQDLQQSN IQDGFSQDNA KNAPDFDRLQ ALNAINNDGE IKDRSQVEKN LASGENIPEI YSSLDTYA // ID O25082_HELPY Unreviewed; 321 AA. AC O25082; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 13-APR-2016, entry version 83. DE SubName: Full=Conserved hypothetical ATP-binding protein {ECO:0000313|EMBL:AAD07377.1}; GN OrderedLocusNames=HP_0312 {ECO:0000313|EMBL:AAD07377.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07377.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07377.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07377.1; -; Genomic_DNA. DR PIR; H64558; H64558. DR RefSeq; NP_207110.1; NC_000915.1. DR RefSeq; WP_001124369.1; NC_018939.1. DR ProteinModelPortal; O25082; -. DR DIP; DIP-3334N; -. DR IntAct; O25082; 1. DR MINT; MINT-170644; -. DR STRING; 85962.HP0312; -. DR PaxDb; O25082; -. DR DNASU; 898820; -. DR EnsemblBacteria; AAD07377; AAD07377; HP_0312. DR GeneID; 898820; -. DR KEGG; heo:C694_01575; -. DR KEGG; hpy:HP0312; -. DR PATRIC; 20591851; VBIHelPyl33062_0323. DR eggNOG; ENOG4105CKI; Bacteria. DR eggNOG; COG0523; LUCA. DR OMA; GTQILRI; -. DR OrthoDB; EOG63RGPZ; -. DR BioCyc; HPY:HP0312-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR Gene3D; 3.30.1220.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR011629; Cbl_biosynth_CobW-like_C. DR InterPro; IPR003495; CobW/HypB/UreG_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF02492; cobW; 1. DR Pfam; PF07683; CobW_C; 1. DR SMART; SM00833; CobW_C; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90002; SSF90002; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:AAD07377.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Nucleotide-binding {ECO:0000313|EMBL:AAD07377.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 220 310 CobW C-terminal. FT {ECO:0000259|SMART:SM00833}. SQ SEQUENCE 321 AA; 36155 MW; 7C3A660A5D915062 CRC64; MPKIPITLIT GFLGSGKTSF LSEYLNQTDH QGVALIINEI GQAALDQRIL SVQYCGEKML YLNAGCVCCN KRLDLVESLK ATLNNYEWHG EILRRIIIET TGLANPAPIL WTILSDTFLG VHFEIQSVVA CVDALNAREH LTNNEAKEQI VFADSVLLTK TDLQNDSAAL TKLKERIQAL NPSAEIFDKR AIDYESLFSR KNRARNFMPR MPKDSHSQGF ETLSINFEGT MEWSAFGIWL SLLLHQYGTQ ILRIKGIIDI GSGFLVSING VMHVIYPPKH ILKDQNGSNL VFIMRHLERE KILNSLKGFK DFLGIKGFET Q // ID O25723_HELPY Unreviewed; 426 AA. AC O25723; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 114. DE SubName: Full=Alpha-ketoglutarate permease (KgtP) {ECO:0000313|EMBL:AAD08137.1}; GN OrderedLocusNames=HP_1091 {ECO:0000313|EMBL:AAD08137.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08137.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08137.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08137.1; -; Genomic_DNA. DR PIR; C64656; C64656. DR RefSeq; NP_207882.1; NC_000915.1. DR RefSeq; WP_001069529.1; NC_018939.1. DR ProteinModelPortal; O25723; -. DR STRING; 85962.HP1091; -. DR PaxDb; O25723; -. DR EnsemblBacteria; AAD08137; AAD08137; HP_1091. DR GeneID; 899627; -. DR KEGG; heo:C694_05635; -. DR KEGG; hpy:HP1091; -. DR PATRIC; 20593521; VBIHelPyl33062_1140. DR eggNOG; ENOG4105CSH; Bacteria. DR eggNOG; ENOG410XP7I; LUCA. DR KO; K03761; -. DR OMA; THTNDPT; -. DR OrthoDB; EOG6SZ1HS; -. DR BioCyc; HPY:HP1091-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR InterPro; IPR005829; Sugar_transporter_CS. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. DR PROSITE; PS00217; SUGAR_TRANSPORT_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 51 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 115 139 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 151 173 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 185 204 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 240 259 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 299 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 306 324 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 336 356 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 368 389 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 401 419 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 13 423 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 426 AA; 47552 MW; C3A08A8DBCA7C49F CRC64; MNPQTATKKP LKSLLAASSG NLVEWYDFYA YAFLAPYFAK EFTHTNDPTL ALISAFLVFM LGFFMRPLGS LFFGKLGDKK GRKTSMVYSI ILMALGSFLL ALLPTKEIVG EWAFLFLLLA RLLQGFSVGG EYGVVATYLS ELGKNGKKGF YGSFQYVTLV GGQLLAIFSL FIVENIYTHD QISAFAWRYL FALGGILALL SLFLRNIMEE TMDSKTTSKT TIKEETQRGS LKELLHHKKA LMIVFGLTMG GSLCFYTFTV YLKIFLTNSS SFSPKESSFI MLLALSYFIF LQPLCGMLAD KIKRTQMLMV FAITGLIVTP VVFYGIKHAT SVYEALFYEI LALSSMSFYT CIAGVIKAEL FPEHVRALGV GLAYAIANAL FGGSASYVAL EFKQHGFEWG FVGYVMFSIV IFMVMVIIFP KKTYLE // ID O25162_HELPY Unreviewed; 196 AA. AC O25162; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 78. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07476.1}; GN OrderedLocusNames=HP_0406 {ECO:0000313|EMBL:AAD07476.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07476.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07476.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07476.1; -; Genomic_DNA. DR PIR; F64570; F64570. DR RefSeq; NP_207204.1; NC_000915.1. DR RefSeq; WP_000352085.1; NC_018939.1. DR ProteinModelPortal; O25162; -. DR DIP; DIP-3390N; -. DR IntAct; O25162; 33. DR MINT; MINT-179500; -. DR STRING; 85962.HP0406; -. DR PaxDb; O25162; -. DR EnsemblBacteria; AAD07476; AAD07476; HP_0406. DR GeneID; 899229; -. DR KEGG; heo:C694_02065; -. DR KEGG; hpy:HP0406; -. DR PATRIC; 20592053; VBIHelPyl33062_0420. DR eggNOG; ENOG4105IFD; Bacteria. DR eggNOG; ENOG4111SHV; LUCA. DR OMA; MWGKVAD; -. DR OrthoDB; EOG613099; -. DR BioCyc; HPY:HP0406-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR025002; DUF3972. DR Pfam; PF13118; DUF3972; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 45 168 DUF3972. {ECO:0000259|Pfam:PF13118}. FT COILED 152 179 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 196 AA; 22473 MW; 2A598EB2E8778334 CRC64; MDILDLNKAQ AVQQNEQEVE DKERESKEPV VLEDLSALAW LELEEFSRLS GLPKERILEL VNLGKIKSKI SSNKLLIDAS SGTNALIKKV ENSLISMDMN GRSLEPVFVE KTINTILNLH DKVIGAKDET ISAFKNENMF LKDALISMQE VYEEDKKTID LLRDELNQAR EEIEFMKRKY RLMWGKVADM SSVNKK // ID O25164_HELPY Unreviewed; 162 AA. AC O25164; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 67. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07487.1}; GN OrderedLocusNames=HP_0408 {ECO:0000313|EMBL:AAD07487.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07487.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07487.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07487.1; -; Genomic_DNA. DR PIR; H64570; H64570. DR RefSeq; NP_207206.1; NC_000915.1. DR RefSeq; WP_001020278.1; NC_018939.1. DR ProteinModelPortal; O25164; -. DR STRING; 85962.HP0408; -. DR PaxDb; O25164; -. DR EnsemblBacteria; AAD07487; AAD07487; HP_0408. DR GeneID; 898893; -. DR KEGG; heo:C694_02080; -. DR KEGG; hpy:HP0408; -. DR PATRIC; 20592059; VBIHelPyl33062_0423. DR OMA; LCDFDAF; -. DR OrthoDB; EOG618QT3; -. DR BioCyc; HPY:HP0408-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 162 AA; 18705 MW; D0007DDE97B4CDD3 CRC64; MNIFQTSLKC CVGLVLSVGV LLGDSKAFKV RVDKSLTPPF LNVLSLAFKQ DMKKEVIFVI TKSNKLSKKV LCDFDAFLLP ETLMSGMPKK ALFHKEFLFQ SKENKTLYAF SLIDSQYCSK GGNYRYELEK LERWFVQKAP ELAESYRVNY KNQYNKTQIS QK // ID O24908_HELPY Unreviewed; 595 AA. AC O24908; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 75. DE SubName: Full=Outer membrane protein (Omp3) {ECO:0000313|EMBL:AAD07150.1}; GN OrderedLocusNames=HP_0079 {ECO:0000313|EMBL:AAD07150.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07150.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07150.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07150.1; -; Genomic_DNA. DR PIR; G64529; G64529. DR RefSeq; NP_206879.1; NC_000915.1. DR RefSeq; WP_000748046.1; NC_018939.1. DR ProteinModelPortal; O24908; -. DR STRING; 85962.HP0079; -. DR PaxDb; O24908; -. DR EnsemblBacteria; AAD07150; AAD07150; HP_0079. DR GeneID; 900164; -. DR KEGG; heo:C694_00385; -. DR KEGG; hpy:HP0079; -. DR PATRIC; 20591365; VBIHelPyl33062_0083. DR eggNOG; COG5651; LUCA. DR OMA; GNYAEKD; -. DR OrthoDB; EOG6T1WPW; -. DR BioCyc; HPY:HP0079-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR002718; OMP_Helicobacter. DR Pfam; PF01856; HP_OMP; 1. DR PRINTS; PR01776; HPOMPFAMILY. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 27 {ECO:0000256|SAM:SignalP}. FT CHAIN 28 595 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004157877. FT COILED 155 182 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 595 AA; 63782 MW; 5B1A614040B4030F CRC64; MKKSFKKLGF VSLAASGVLL GSMNATDLET YAALQKSSHV FGNYAEKDKD SKLTSDSPTQ QQDQKVAQNT ASNDSQEATT LENTASTDNT TATTDETYTK STDTTVAGAA QKVETDNTAV QSAEQTLKTD VAKVQADASA KDFDETTFQA DQAAEQTAEK ALQQAESKLN TDQQTLNTAL QDQTKTPTPS TPPTKEEPKH TASSGTPPAP ESPPAKKDET SGTPSASGSS VASQLTKDTT MVNNLKSVSV SAMNTTLSGV ETMSQQTATI GNLLNSSTDL SSVIPNAQGL NSAFSTLESA QNTLKGYLNS SSATIGQLTN GSNAVVGALD KAINQVDMAL ADLSAADTQK TQAVTLATAS DSPTTTTDAI NFLNALKSNL MAQKDAFLNV HKNIQTAVAQ AQETYTPSVI NTNNYGQMYG VDAMAGYKWF FGKTKRFGFR SYGYYSYNHA NLSFVGSQLG IMEGASQVNN FTYGVGFDVL YNFYESKEGY NTAGLFLGFG LGGDSFIVQG ESYLKSQMHI CNNTAGCSAS MNTSYFQMPV EFGFRSNFSK HSGIEVGFKL PLFTNQFYKE RGVDGSVDVF YKRNFSIYFN YMINF // ID O25040_HELPY Unreviewed; 384 AA. AC O25040; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 88. DE SubName: Full=Adenine specific DNA methyltransferase (Mod) {ECO:0000313|EMBL:AAD07328.1}; GN OrderedLocusNames=HP_0260 {ECO:0000313|EMBL:AAD07328.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07328.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07328.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07328.1; -; Genomic_DNA. DR PIR; D64552; D64552. DR RefSeq; NP_207058.1; NC_000915.1. DR RefSeq; WP_000549706.1; NC_000915.1. DR ProteinModelPortal; O25040; -. DR IntAct; O25040; 4. DR STRING; 85962.HP0260; -. DR REBASE; 56866; M.Hpy26695ORF1315P. DR PaxDb; O25040; -. DR EnsemblBacteria; AAD07328; AAD07328; HP_0260. DR GeneID; 899185; -. DR KEGG; heo:C694_01315; -. DR KEGG; hpy:HP0260; -. DR PATRIC; 20591747; VBIHelPyl33062_0271. DR eggNOG; ENOG4106KIZ; Bacteria. DR eggNOG; COG2189; LUCA. DR KO; K07316; -. DR OMA; IIKSHEY; -. DR OrthoDB; EOG6FV84T; -. DR BioCyc; HPY:HP0260-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 3. DR InterPro; IPR002295; D21N6_MeTrfase. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00506; D21N6MTFRASE. DR SUPFAM; SSF53335; SSF53335; 2. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Methyltransferase {ECO:0000313|EMBL:AAD07328.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transferase {ECO:0000313|EMBL:AAD07328.1}. FT DOMAIN 21 346 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 384 AA; 44774 MW; 4D0F0A09F5BD1F75 CRC64; MHKVFIMEAL ECLKRIEKES IQTIYIDPPY NTKSSNFEYE DDHADYEKWI KEHLILAKAV LKQSGCLFIS MDDNKMAEVK IIANEIFGTR NFLGTFITKQ ATRSNAKHIN ITHEYVLSYA KNKAFAPGFK ILRTLLPIYA RALKDLMRTI KNVFKQKGQA QAQLVLKEQI KELSQKEHFN FLKNYNLVDE KGEIYFAKDL STPSNPRSVA IEEINLFLEP LKSRGWSSDE KLKELYYQNR LIFKNNRPYE KYYLKESQDN CLSVLDFYSR QGTKDLEKLG LKGLFKTPKP VALIKYLLLC STPKDSIILD FFAGSGTTAQ AVIEVNRDYC LNWSFYLCQK EEKIKNNPQA VSILKNKGYQ NTISNIMLLR LEKIIKRSEY EILR // ID O26042_HELPY Unreviewed; 877 AA. AC O26042; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 99. DE SubName: Full=Iron-regulated outer membrane protein (FrpB) {ECO:0000313|EMBL:AAD08553.1}; GN OrderedLocusNames=HP_1512 {ECO:0000313|EMBL:AAD08553.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD08553.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD08553.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD08553.1; -; Genomic_DNA. DR PIR; H64708; H64708. DR RefSeq; NP_208303.1; NC_000915.1. DR RefSeq; WP_000945747.1; NC_018939.1. DR ProteinModelPortal; O26042; -. DR STRING; 85962.HP1512; -. DR PaxDb; O26042; -. DR EnsemblBacteria; AAD08553; AAD08553; HP_1512. DR GeneID; 899779; -. DR KEGG; heo:C694_07830; -. DR KEGG; hpy:HP1512; -. DR PATRIC; 20594439; VBIHelPyl33062_1588. DR eggNOG; COG1629; LUCA. DR KO; K02014; -. DR OMA; HDANTVI; -. DR OrthoDB; EOG6384F1; -. DR BioCyc; HPY:HP1512-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0004872; F:receptor activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 2.170.130.10; -; 1. DR Gene3D; 2.40.170.20; -; 2. DR InterPro; IPR012910; Plug_dom. DR InterPro; IPR000531; TonB-dep_rcpt_b-brl. DR Pfam; PF07715; Plug; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 47 140 Plug. {ECO:0000259|Pfam:PF07715}. SQ SEQUENCE 877 AA; 97385 MW; 0B9DA6632BCA0329 CRC64; MLRNQFRIVF VSCIVASNLQ AQETTHTLGK VTTKGERTFE YNNKMYIDRK ELQQRQSNQI RDIFRTRADV NVASGGLMAQ KIYVRGIESR LLRVTIDGVA QNGNIFHHDA NTVIDPNMIK EVEVIKGAAN ASAGPGAVAG KLSFTTIDAN DFLRKNQTYG AKAEAAFYTN FGYRMNATAA YRGKNWDILA YYNHQNIFYY RDGNNAFRNV FHPNYDLQDP SNSDMSVGTP SEVNSVLAKI NGYINETDSI SVSYNLTRDN STRLLRPNTT SALSKANDPG SQPAPFVIDF GKELAHTINF NHNLSLKYKH EGGPNFNQPR VESTAFLGVR GGNYNPVVNP FAYNSNEPAN PDYIPEVKEW CNNPDNISQC TQGAIRPSNG GYQIGYGTPN SINWQGTSDS SGGAQAGYGQ LNAISTSANV YHGLVPKNPD YDMTPPNAQN PSANDWTLGN ADAEGTLARR IFLINSGVNF KVTHPISEDY GNVFEYGMIY QNLSVFSGLD KGKNGYYKNN IDPNDPNGPG LPYRHYYTDQ SSQYPQNLNT PNPLYRNMPQ NSHAIGNIIG GFMQANYNIL SNVIVGAGTR YDIYTLLDKN GRTHVTSGFS PSATVLYNPI ESIGLKVSYA YVTKGALPGD GVLMRDPTVI YQRNLRPAIG QNVEFNVDFN SKYFNVRGAA FYQVINNFIN SYGQDTSKNG GGNATAKNMS GNLPETINIY GYEVSGNVRY KNFLGTFSVA RSWPTARGHL LADTYALAAT TGNVFILKAD YDVRRWGLTL TWLSRFVTNM YYEGYSIYYP QYGLIKIHKP GYGVHNVFIN WTPPSKKWQG LRISAVFNNI LNKQYVDQTS VFQASADAPA SDMIPKGKRM ALPAPGFNAR FEVSYQF // ID O25575_HELPY Unreviewed; 23 AA. AC O25575; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07968.1}; GN OrderedLocusNames=HP_0917 {ECO:0000313|EMBL:AAD07968.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07968.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07968.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07968.1; -; Genomic_DNA. DR PIR; E64634; E64634. DR STRING; 85962.HP0917; -. DR PaxDb; O25575; -. DR EnsemblBacteria; AAD07968; AAD07968; HP_0917. DR KEGG; heo:C694_04720; -. DR BioCyc; HPY:HP0917-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. SQ SEQUENCE 23 AA; 2717 MW; FC3042379DA2FD44 CRC64; MSPLTPLRNP LTQEDRFFQE IIA // ID O24944_HELPY Unreviewed; 286 AA. AC O24944; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 72. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07199.1}; GN OrderedLocusNames=HP_0130 {ECO:0000313|EMBL:AAD07199.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07199.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07199.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07199.1; -; Genomic_DNA. DR PIR; B64536; B64536. DR RefSeq; NP_206930.1; NC_000915.1. DR RefSeq; WP_000821582.1; NC_018939.1. DR ProteinModelPortal; O24944; -. DR IntAct; O24944; 1. DR PaxDb; O24944; -. DR EnsemblBacteria; AAD07199; AAD07199; HP_0130. DR GeneID; 900155; -. DR KEGG; heo:C694_00640; -. DR KEGG; hpy:HP0130; -. DR PATRIC; 20591479; VBIHelPyl33062_0139. DR OMA; FGALHEQ; -. DR OrthoDB; EOG6DC6HF; -. DR BioCyc; HPY:HP0130-MONOMER; -. DR Proteomes; UP000000429; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 253 280 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 286 AA; 32768 MW; A0F16F538CDD12A2 CRC64; MKRILFFLVA TTFLLRAETD SATINTTVDP NVMFSESSTG NVKKDRKRVL KSMVNLEKER VKNFNRYSET KMSKGDLSAF GAFFKGSLES CVDQKICYYE HKDGKVSFVV NDREKFYKHV LKDLGTELSL PLFNWLYKGS DFGALHEQFG DMYDGYIKYL ISMVRISQKE KARKVDAIVL KKMEEQAEKD TKAAFQKRSS GELESHTDSP EFISSSKRTQ NASNSDLNSM TNANALKETA SKEPEASSKK EKKSKKKRRL SKKEKQQQAL QQEFEKQISD SSKSEK // ID O24938_HELPY Unreviewed; 461 AA. AC O24938; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 79. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07190.1}; GN OrderedLocusNames=HP_0119 {ECO:0000313|EMBL:AAD07190.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07190.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07190.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07190.1; -; Genomic_DNA. DR PIR; G64534; G64534. DR RefSeq; NP_206919.1; NC_000915.1. DR RefSeq; WP_001144146.1; NC_018939.1. DR ProteinModelPortal; O24938; -. DR IntAct; O24938; 1. DR MINT; MINT-4065517; -. DR STRING; 85962.HP0119; -. DR PaxDb; O24938; -. DR EnsemblBacteria; AAD07190; AAD07190; HP_0119. DR GeneID; 900160; -. DR KEGG; heo:C694_00590; -. DR KEGG; hpy:HP0119; -. DR PATRIC; 20591453; VBIHelPyl33062_0126. DR OMA; PRDFNAT; -. DR OrthoDB; EOG6QVRF9; -. DR BioCyc; HPY:HP0119-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR008592; DUF874. DR Pfam; PF05917; DUF874; 4. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT COILED 96 155 {ECO:0000256|SAM:Coils}. FT COILED 160 201 {ECO:0000256|SAM:Coils}. FT COILED 206 247 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 461 AA; 53650 MW; 96A3450590B7F47E CRC64; MPVIRVLVML ATMMMKLVKT AKEKKVFKNV GMSIMGIAFW EAIKDSIKKQ IKKSNWICGN VKTADDYLKT HPNSWFNSAI GVTTITAMLM NVCFADDQSK KEVAETQKEA ENARDRANKS GIELEQEQQK TEQEKQKTEQ EKQKTEQEKQ KTSNIETNNQ IKVEQKQQKT EQEKQKTEQE KQKTEQEKQK TEQEKQKTSN IETNNQIKVE QKQQKTEQEK QKTEQEKQKT EQEKQKTEQE KQKTSNIETN NQIKVEQEQQ KTEQEKQKTN NTQKDLVKYA EQNCQENHNQ FFIKKLGIKG GIAIEVEAEC KTPKPAKTNQ TPIQPKHLPN SKQPHSQRGS KAQEFIAYLQ KELEFLPYSQ KAIAKQVNFY KPSSIAYLEL DPRDFKVTEE WQKENLKIRS KAQAKMLEMR DLKPDPQAHL PTSQSLLFVQ KIFADVNKEI EAVANTEKKA EKAGYGYSKR M // ID O25346_HELPY Unreviewed; 681 AA. AC O25346; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 74. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07700.1}; GN OrderedLocusNames=HP_0629 {ECO:0000313|EMBL:AAD07700.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07700.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07700.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07700.1; -; Genomic_DNA. DR PIR; E64598; E64598. DR RefSeq; NP_207423.1; NC_000915.1. DR RefSeq; WP_000387635.1; NC_018939.1. DR ProteinModelPortal; O25346; -. DR IntAct; O25346; 2. DR STRING; 85962.HP0629; -. DR PaxDb; O25346; -. DR EnsemblBacteria; AAD07700; AAD07700; HP_0629. DR GeneID; 900025; -. DR KEGG; heo:C694_03255; -. DR KEGG; hpy:HP0629; -. DR PATRIC; 20592541; VBIHelPyl33062_0659. DR eggNOG; COG1479; LUCA. DR OMA; QRITTIM; -. DR OrthoDB; EOG6SV575; -. DR BioCyc; HPY:HP0629-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR InterPro; IPR011089; DUF1524. DR InterPro; IPR004919; DUF262. DR Pfam; PF07510; DUF1524; 1. DR Pfam; PF03235; DUF262; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}. FT DOMAIN 17 216 DUF262. {ECO:0000259|Pfam:PF03235}. FT DOMAIN 413 545 DUF1524. {ECO:0000259|Pfam:PF07510}. SQ SEQUENCE 681 AA; 79954 MW; 724A92BF3D8D7AE2 CRC64; MEAKQSTVND FFALTGTIFS IPVYQRNYTW EEKNCEKLLQ DIISISQNKK THFMGSITYI LHWIDDEKSL RKLQEFVIID GQQRITTLML LLKAIETKIP NEEVKKEIDN LLNLSGQKLR LKPIKSDKEA FDLVMQNRSH EIQGVSHIRN NYKFFTKELD NHISKGYRIE EIYGAFLRLK IVAIGLELGE DDPQVVFESI NAGVQLKGLD LIRNYLMMGE NSDNQNRLYN TYWVPLEDWL GKKDLNGFIK TYLRIYFEDR LKEGEREVYY ALKAHHRENF PNDIQGLMSD MREYGRIYQI FLDRDHYFLH HGDPQQLANL RLRVKDLVKI KFGVAKPFVL RCARDFEEGK LDYENFYEIL QILISYFVRR SVCGESTPTL TRVLYSLYRQ LEEDVSADAL KRYLGKSVGQ MAFPNDDKIK AAFLVRNAYA ANQVCKFILL EIEKLSNAEP PREENLEVEH FYPKTPTQEW RDRVGDYFTF EQDYLNNFGN LTLSGQNQKL GNKPYEAKIE LMEEYSSLHL NDYFINNTHS WGIEEVKNRS EYLADQFCQV GLFKDLPKEY RTREISKTLD DDLTSHNLQS VKLPNHQRKI ARNAKELASA VIDYLLENAR EAFESYTDEE PRYICWDKAK AQLRDRDGTL VVPFEKYGFY FVSNASYQTV GSNLRDLILG CDLNPRDFIV E // ID O25332_HELPY Unreviewed; 166 AA. AC O25332; DT 01-JAN-1998, integrated into UniProtKB/TrEMBL. DT 01-JAN-1998, sequence version 1. DT 16-MAR-2016, entry version 61. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAD07678.1}; GN OrderedLocusNames=HP_0611 {ECO:0000313|EMBL:AAD07678.1}; OS Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter OS pylori). OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. OX NCBI_TaxID=85962 {ECO:0000313|EMBL:AAD07678.1, ECO:0000313|Proteomes:UP000000429}; RN [1] {ECO:0000313|EMBL:AAD07678.1, ECO:0000313|Proteomes:UP000000429} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 700392 / 26695 {ECO:0000313|Proteomes:UP000000429}; RX PubMed=9252185; DOI=10.1038/41483; RA Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., RA Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., RA Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., RA Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., RA McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., RA Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., RA Karp P.D., Smith H.O., Fraser C.M., Venter J.C.; RT "The complete genome sequence of the gastric pathogen Helicobacter RT pylori."; RL Nature 388:539-547(1997). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AE000511; AAD07678.1; -; Genomic_DNA. DR PIR; C64596; C64596. DR RefSeq; WP_010875506.1; NC_018939.1. DR ProteinModelPortal; O25332; -. DR STRING; 85962.HP0611; -. DR PaxDb; O25332; -. DR PRIDE; O25332; -. DR EnsemblBacteria; AAD07678; AAD07678; HP_0611. DR PATRIC; 20592501; VBIHelPyl33062_0639. DR eggNOG; COG0842; LUCA. DR OMA; KNTTEVF; -. DR OrthoDB; EOG61P6R3; -. DR BioCyc; HPY:HP0611-MONOMER; -. DR Proteomes; UP000000429; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000429}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000429}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 35 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 79 97 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 133 154 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 166 AA; 18795 MW; 017997EB885BA629 CRC64; MLSPATFKQI TLALIASRLI VVILYAFIFI VLSFYMLNII TILNFKALIL GFVSVFSSAL FCFCLAIFVA RIFQNEQSIL GFCNIINLYA LMSCNVFVPL EYLPSIGQLF IKTSIFYYLN QLLIKAFQGI DTILVLATST FFIIGGIILF LLSANRMLLT PKERMR //